586d2bb696
gnu: r-limma: Update to 3.54.2.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.2.
2023-03-15 17:40:42 +01:00
810a8e5060
gnu: r-lfa: Update to 1.28.2.
...
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.2.
2023-03-15 17:40:42 +01:00
20b1ef8047
gnu: r-genomicalignments: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.1.
2023-03-15 17:40:42 +01:00
7f9346c031
gnu: r-annotationdbi: Update to 1.60.2.
...
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2.
2023-03-15 17:40:42 +01:00
b9af764895
gnu: r-infercnv: Update to 1.14.2.
...
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2.
2023-03-15 17:40:42 +01:00
b28eff5aec
gnu: r-bandits: Update to 1.14.2.
...
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2.
2023-03-15 17:40:41 +01:00
eeece329e8
gnu: r-bambu: Update to 3.0.8.
...
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.8.
2023-03-15 17:40:41 +01:00
fee92975a2
gnu: r-atena: Update to 1.4.1.
...
* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.1.
[propagated-inputs]: Add r-matrixstats.
2023-03-15 17:40:41 +01:00
9df1de70e1
gnu: r-alpsnmr: Update to 4.0.4.
...
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.0.4.
[propagated-inputs]: Add r-cli.
2023-03-15 17:40:41 +01:00
accebcfce5
gnu: r-biocpkgtools: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.1.
[source]: Add snippet to remove bundled minified JavaScript files.
[native-inputs]: Add esbuild, js-bootstrap, js-d3, js-jquery, and
js-underscore.
[arguments]: Add build phase 'process-javascript.
2023-03-15 17:40:41 +01:00
db17611dc9
gnu: r-mast: Update to 1.24.1.
...
* gnu/packages/bioconductor.scm (r-mast): Update to 1.24.1.
[source]: Delete minified JavaScript.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-jquery-sticky-kit.
2023-03-15 17:40:38 +01:00
cacd7b6768
gnu: sbcl-nclasses: Update to 0.3.0.
...
* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.3.0.
2023-03-15 17:33:16 +01:00
8a47949463
gnu: Add sbcl-stumpwm-hostname.
...
* gnu/packages/wm.scm (sbcl-stumpwm-hostname): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-03-15 15:49:20 +01:00
2c58713241
gnu: sbcl-mcclim: Update project urls.
...
* gnu/packages/lisp-xyz.scm (sbcl-mcclim)[source]: Update source url.
[home-page]: Update project home page.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-03-15 15:46:13 +01:00
a4f6a8a2cf
gnu: reprotest: Update to 0.7.23.
...
* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.23.
[phases] Update adjust-locales.
2023-03-15 15:39:14 +01:00
84ce4459f1
gnu: diffoscope: Update to 238.
...
* gnu/packages/diffoscope.scm (diffoscope): Update to 238.
[native-inputs]: Switch from poppler to poppler-next.
2023-03-15 15:39:10 +01:00
201251b1ff
gnu: emacs-org-modern: Update to 0.9.
...
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.9.
2023-03-15 12:22:03 +04:00
d37b467631
gnu: r-rhandsontable: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-rhandsontable): Move this variable from
here...
* gnu/packages/cran.scm (r-rhandsontable): ...to here.
2023-03-14 17:58:28 +01:00
204c51cac4
gnu: Add r-premessa.
...
* gnu/packages/bioinformatics.scm (r-premessa): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2023-03-14 17:58:28 +01:00
4ebc36206b
gnu: icecat: Update to 102.9.0-guix0-preview1 [security fixes].
...
Includes fixes for CVE-2023-25751, CVE-2023-25752, CVE-2023-28162,
CVE-2023-28163, CVE-2023-28164, and CVE-2023-28176.
* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
2023-03-14 12:51:20 -04:00
27c8ab4bf3
gnu: Add r-rhandsontable.
...
* gnu/packages/bioinformatics.scm (r-rhandsontable): New variable.
Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2023-03-14 17:48:14 +01:00
633c935e0a
gnu: r-tidyverse: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-tidyverse): Update to 2.0.0.
[propagated-inputs]: Remove r-crayon; add r-conflicted and r-ragg.
2023-03-14 14:15:33 +01:00
8fb1edcceb
gnu: pcb-rnd: Update to 3.1.0.
...
* gnu/packages/engineering.scm (pcb-rnd): Update to 3.1.0.
[inputs]: Add librnd.
[arguments]: Use gexp; set LIBRND_PREFIX.
2023-03-14 14:15:33 +01:00
eacd68aa44
gnu: Add librnd.
...
* gnu/packages/engineering.scm (librnd): New variable.
2023-03-14 14:15:33 +01:00
42bb34e21a
gnu: pcb: Remove eudev.
...
* gnu/packages/engineering.scm (pcb)[inputs]: Remove eudev as it is no longer
necessary to add it for mesa.
2023-03-14 14:15:33 +01:00
e7dc5681a6
gnu: pcb: Drop input labels.
...
* gnu/packages/engineering.scm (pcb)[inputs, native-inputs]: Remove package
labels.
2023-03-14 14:15:33 +01:00
c2ff0e2d13
gnu: pcb: Update to 4.3.0.
...
* gnu/packages/engineering.scm (pcb): Update to 4.3.0.
[arguments]: Remove obsolete build phases.
2023-03-14 14:15:33 +01:00
6822730c8d
gnu: pcb: Use gexp.
...
* gnu/packages/engineering.scm (pcb)[arguments]: Use gexp and drop trailing #T
from build phases.
2023-03-14 14:15:33 +01:00
c20e80b102
gnu: lepton-eda: Adjust format.
...
* gnu/packages/engineering.scm (lepton-eda): Move arguments above inputs, and
reformat source field.
2023-03-14 14:15:33 +01:00
753fb6a54d
gnu: lepton-eda: Use gexp for arguments.
...
* gnu/packages/engineering.scm (lepton-eda)[arguments]: Use gexp.
2023-03-14 14:15:33 +01:00
1c5ef6bd3c
gnu: lepton-eda: Drop input labels.
...
* gnu/packages/engineering.scm (lepton-eda)[native-inputs, inputs]: Do not use
redundant package labels.
2023-03-14 14:15:33 +01:00
a6009e0bf8
gnu: guix-build-coordinator: Update to 0-73.7c1eedf.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-73.7c1eedf.
2023-03-14 10:36:32 +00:00
476e1b270e
gnu: mruby: Update to 3.2.0.
...
* gnu/packages/ruby.scm (mruby): Update to 3.2.0.
[arguments]: Remove unnecessary substitutions in the 'disable-broken-tests
phase.
[description]: Update.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:32 +00:00
056f743718
gnu: autokey: Update to 0.96.0.
...
* gnu/packages/python-xyz.scm (autokey): Update to 0.96.0.
[source]: Patch tests.
[arguments]: Enable tests. Prefer PATH over substitute* in phase 'fix-paths.
Add phase 'setup-env-vars. Rename 'wrap-autokey-gi to 'wrap-autokey and set PATH.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest, python-pytest-cov and python-pyhamcrest.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:32 +00:00
3a3231322a
gnu: tesseract-ocr: Update to 5.3.0.
...
* gnu/packages/ocr.scm (tesseract-ocr): Update to 5.3.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:32 +00:00
17a5d2019a
gnu: gimagereader: Update to 3.4.1.
...
* gnu/packages/ocr.scm (gimagereader): Update to 3.4.1.
[inputs]: Remove quazip-0; add quazip.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:31 +00:00
8065e7fff3
gnu: phantomsocks: Update to 0.0.0-20230223180716-34d21f24a9eb.
...
* gnu/packages/networking.scm (phantomsocks): Update to
0.0.0-20230223180716-34d21f24a9eb.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:31 +00:00
cf59f6bb3b
gnu: rng-tools: Update to 6.16.
...
* gnu/packages/linux.scm (rng-tools): Update to 6.16.
[arguments]: Disable qrypt.
[inputs]: Add libcap.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:31 +00:00
cf111a37f3
gnu: rng-tools: Do not build randstat binary.
...
This trivial binary is rarely useful.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/patches/rng-tools-revert-build-randstat.patch: New file.
* gnu/packages/linux.scm (rng-tools)[origin]: Add patch.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:31 +00:00
9baadac2b7
gnu: rng-tools: Rewrite using gexps.
...
* gnu/packages/linux.scm (rng-tools)[arguments]: Rewrite using gexps.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:31 +00:00
79ba6380cf
gnu: splash: Update to 3.7.2.
...
* gnu/packages/astronomy.scm (splash): Update to 3.7.2.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14 10:36:31 +00:00
15bab8f1f7
gnu: clipmenu: Improve package style.
...
* gnu/packages/xdisorg.scm (clipmenu)[arguments]: Use g-expressions; remove
trailing #t from phases.
2023-03-14 10:36:31 +00:00
3efd1ce0b5
gnu: clipmenu: Update to 6.2.0.
...
* gnu/packages/xdisorg.scm (clipmenu): Update to 6.2.0.
[arguments]: Install two additional commands.
2023-03-14 10:36:30 +00:00
302680dbce
teams: Add 宋文武 to xfce and lxqt teams.
...
* etc/teams.scm.in ("宋文武"): Add xfce and lxqt.
2023-03-14 17:54:48 +08:00
aef9b68ea4
teams: Add Xfce and LXQt teams.
...
* etc/teams.scm.in (xfce, lxqt): New teams.
2023-03-14 17:54:44 +08:00
5312d798ac
gnu: go-golang-zx2c4-com-wireguard: Update to 0.0.20211016.
...
Newer releases of this package are available but require newer versions of
Golang, especially around networking.
* gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard): Update to
0.0.20211016.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-13 20:34:36 +00:00
f04a523137
gnu: python-graph-tool: Update to 2.46.
...
* gnu/packages/graph.scm (python-graph-tool): Update to 2.46.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-13 20:33:48 +00:00
e5cc1fffba
gnu: python-bibtexparser: Update to 1.4.0.
...
* gnu/packages/python-xyz.scm (python-bibtexparser): Update to 1.4.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-13 20:32:43 +00:00
c2dbcbefe2
gnu: nar-herder: Update to 0-18.659543c.
...
* gnu/packages/package-management.scm (nar-herder): Update to 0-18.659543c.
[source]: Switch to Savannah.
2023-03-13 20:22:42 +00:00
53c54020f0
gnu: guix-build-coordinator: Update to 0-72.4d8ee69.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-72.4d8ee69.
[source]: Switch to Savannah.
2023-03-13 20:20:38 +00:00
Ricardo Wurmus
Pierre Neidhardt
jgart
Vagrant Cascadian
Andrew Tropin
Navid Afkhami
Mark H Weaver
Christopher Baines
Yovan Naumovski
Bruno Victal
kiasoc5
Hilton Chain
Sharlatan Hellseher
EuAndreh via Guix-patches via
宋文武
Felix Lechner
Ale Abdo
Amade Nemes