52d8c140b8
gnu: r-lamw: Update to 2.1.2.
...
* gnu/packages/cran.scm (r-lamw): Update to 2.1.2.
2023-03-19 16:11:54 +01:00
028166eec9
gnu: r-rcppnumerical: Update to 0.5-0.
...
* gnu/packages/cran.scm (r-rcppnumerical): Update to 0.5-0.
[native-inputs]: Add r-knitr and r-rmarkdown.
2023-03-19 16:11:54 +01:00
6264b80731
gnu: r-partykit: Update to 1.2-18.
...
* gnu/packages/cran.scm (r-partykit): Update to 1.2-18.
2023-03-19 16:11:54 +01:00
55c0a27187
gnu: r-ape: Update to 5.7-1.
...
* gnu/packages/cran.scm (r-ape): Update to 5.7-1.
[propagated-inputs]: Add r-digest.
2023-03-19 16:11:54 +01:00
42c4356f9c
gnu: r-ggmap: Update to 3.0.2.
...
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.2.
2023-03-19 16:11:54 +01:00
441c60d2b2
gnu: r-gensa: Update to 1.1.8.
...
* gnu/packages/cran.scm (r-gensa): Update to 1.1.8.
2023-03-19 16:11:54 +01:00
4235e02dd9
gnu: r-rstpm2: Update to 1.6.2.
...
* gnu/packages/cran.scm (r-rstpm2): Update to 1.6.2.
2023-03-19 16:11:54 +01:00
17b68a4ac5
gnu: r-fastmap: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-fastmap): Update to 1.1.1.
2023-03-19 16:11:53 +01:00
29f95b47ec
gnu: r-modelenv: Update to 0.1.1.
...
* gnu/packages/cran.scm (r-modelenv): Update to 0.1.1.
2023-03-19 16:11:53 +01:00
b71f95b08e
gnu: r-readxl: Update to 1.4.2.
...
* gnu/packages/cran.scm (r-readxl): Update to 1.4.2.
2023-03-19 16:11:53 +01:00
2416e5dcd4
gnu: r-ggalluvial: Update to 0.12.5.
...
* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.5.
2023-03-19 16:11:53 +01:00
02cdebebff
gnu: r-climaemet: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-climaemet): Update to 1.1.0.
2023-03-19 16:11:53 +01:00
d1dbfcc4cb
gnu: r-gson: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-gson): Update to 0.1.0.
2023-03-19 16:11:53 +01:00
58e114a702
gnu: r-googlevis: Update to 0.7.1.
...
* gnu/packages/cran.scm (r-googlevis): Update to 0.7.1.
[native-inputs]: Add r-rmarkdown.
2023-03-19 16:11:53 +01:00
332d829c6e
gnu: r-castor: Update to 1.7.8.
...
* gnu/packages/cran.scm (r-castor): Update to 1.7.8.
2023-03-19 16:11:53 +01:00
3556f4319c
gnu: r-cachem: Update to 1.0.7.
...
* gnu/packages/cran.scm (r-cachem): Update to 1.0.7.
2023-03-19 16:11:53 +01:00
ff80f791e9
gnu: r-afpt: Update to 1.1.0.3.
...
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.3.
2023-03-19 16:11:53 +01:00
a28a357675
gnu: r-mutoss: Update to 0.1-13.
...
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-13.
2023-03-19 16:11:53 +01:00
55710837d9
gnu: r-valr: Update to 0.6.7.
...
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.7.
2023-03-19 16:11:53 +01:00
ab428404de
gnu: r-numbat: Update to 1.2.2.
...
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.2.2.
2023-03-19 16:11:53 +01:00
9d4e62ccce
gnu: r-memuse: Adjust indentation.
...
* gnu/packages/cran.scm (r-memuse): Adjust indentation.
2023-03-19 16:11:53 +01:00
af861fdead
gnu: r-shadowtext: Update indentation.
...
* gnu/packages/cran.scm (r-shadowtext): Adjust indentation.
2023-03-19 16:11:53 +01:00
257ef3f659
gnu: Add r-mclogit.
...
* gnu/packages/cran.scm (r-mclogit): New variable.
2023-03-19 16:11:53 +01:00
8eccc02ec9
gnu: Add r-memisc.
...
* gnu/packages/cran.scm (r-memisc): New variable.
2023-03-19 16:11:53 +01:00
ac5011546d
gnu: r-qs: Update to 0.25.5.
...
* gnu/packages/cran.scm (r-qs): Update to 0.25.5.
[inputs]: Remove zlib.
2023-03-19 16:11:53 +01:00
a1fcc6c595
gnu: r-leaflet: Update to 2.1.2.
...
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.2.
2023-03-19 16:11:53 +01:00
2c58e06a17
gnu: r-sf: Update to 1.0-11.
...
* gnu/packages/cran.scm (r-sf): Update to 1.0-11.
[inputs]: Remove zlib.
2023-03-19 16:11:53 +01:00
47bce97778
gnu: r-ggvis: Update to 0.4.8.
...
* gnu/packages/cran.scm (r-ggvis): Update to 0.4.8.
[source]: Remove five minified JavaScript files.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-lodash.
2023-03-19 16:11:53 +01:00
1b50213ad7
gnu: r-opencpu: Update to 2.2.9.
...
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.9.
[source]: Remove two minified JavaScript files.
[arguments]: Add build phases 'process-javascript.
[native-inputs]: Add esbuild, r-r-rsp, and js-query.
2023-03-19 16:11:53 +01:00
6b41dccf35
gnu: r-bookdown: Update to 0.33.
...
* gnu/packages/cran.scm (r-bookdown): Update to 0.33.
[source]: Delete three minified JavaScript files.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild, js-clipboard, js-lunarjs, and js-mathquill.
2023-03-19 16:11:53 +01:00
fce72b3522
gnu: r-haven: Update to 2.5.2.
...
* gnu/packages/cran.scm (r-haven): Update to 2.5.2.
[arguments]: Update to link with readstat.
[inputs]: Add zlib.
2023-03-19 16:11:53 +01:00
40cb3c30fc
gnu: readstat: Update to 1.1.9.
...
* gnu/packages/statistics.scm (readstat): Update to 1.1.9.
2023-03-19 16:11:53 +01:00
5050034b4e
gnu: r-httpuv: Update to 1.6.9.
...
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.9.
[inputs]: Replace libuv with libuv-for-r-httpuv.
[arguments]: Patch Makevars to link with that variant of libuv.
2023-03-19 16:11:53 +01:00
ef86b0b12e
gnu: Add libuv-for-r-httpuv.
...
* gnu/packages/libevent.scm (libuv-for-r-httpuv): New variable.
2023-03-19 16:11:53 +01:00
e72d0d9208
gnu: r-dt: Update to 0.27.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.27.
2023-03-19 16:11:49 +01:00
f9702aa9fd
gnu: Add python-brian2.
...
* gnu/packages/machine-learning.scm (python-brian2): New variable.
2023-03-19 11:33:52 +01:00
c16add7fd9
gnu: python-pillow: Fix CVE-2022-45199.
...
Fixes: <https://issues.guix.gnu.org/issue/61172 >
* gnu/packages/python-xyz.scm (python-pillow/security-fixes): New variable.
(python-pillow): Add replacement.
* gnu/packages/patches/python-pillow-CVE-2022-45199.patch: New file.
* gnu/local.mk: Register it.
2023-03-19 10:57:00 +01:00
d7b4ecdb4c
gnu: Add a4pdf.
...
* gnu/packages/pdf.scm (a4pdf): New variable.
2023-03-19 09:25:36 +01:00
fa50974134
gnu: komikku: Update to 1.14.0.
...
* gnu/packages/gnome.scm (komikku): Update to 1.14.0.
2023-03-19 09:25:36 +01:00
d59eb81b5c
gnu: zig: Build against a baseline CPU.
...
* gnu/packages/zig.scm (zig-0.10)[#:configure-flags]: Add
“-DZIG_TARGET_MCPU=baseline”.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-03-19 09:25:36 +01:00
c483cc2b9f
gnu: python-dropbox: Update to 11.36.0.
...
* gnu/packages/file-systems.scm (python-dropbox): Update to 11.36.0.
[source]: Add snippet to accept newer versions of python-pytest-runner.
2023-03-19 00:20:36 +02:00
99af743311
gnu: python-ipython: Update to 8.5.0.
...
This is a conservative update to the first version that passes all tests.
The version 8.8.0 works also, the latest 8.10.0 requires changes to the
recipe.
* gnu/packages/python-xyz.scm (python-ipython): Update to 8.5.0.
2023-03-18 20:27:05 +01:00
edd0ec7c2f
gnu: packagekit: Fix installation directory for bash completions.
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Without this patch, packagekit would attempt to install bash completions
to another store directory, invoking pkexec in the process and raising
a cryptic error.
* gnu/packages/freedesktop.scm (packagekit)[#:phases]: Add
‘fix-bash-completion-dir’.
Co-authored-by: Andreas Enge <andreas@enge.fr>
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-03-18 18:55:36 +01:00
2a34300240
gnu: glib-networking: Fix 32-bit builds.
...
* gnu/packages/gnome.scm (glib-networking): Remove obsolete patch.
* gnu/packages/patches/glib-networking-32-bit-time.patch: Remove file.
* gnu/local (dist_patch_DATA): Remove it.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-03-18 18:27:09 +01:00
de3588965c
Revert "* gnu/packages/gnome.scm (glib-networking): Remove obsolete patch."
...
This reverts commit cc56be2f38
2023-03-18 18:25:30 +01:00
34fed18169
gnu: Add tissue.
...
* gnu/packages/web.scm (tissue): New variable.
2023-03-18 17:23:32 +00:00
97c20aa1d1
gnu: python-pyqt5-sip: Update to 12.11.1.
...
* gnu/packages/qt.scm (python-pyqt5-sip): Update to 12.11.1.
2023-03-18 15:34:50 +01:00
d9a31cd34e
gnu: python-coveralls: Disable failing test and relax version requirements.
...
* gnu/packages/python-check.scm (python-coveralls)[source]: Relax version
requirement for python-coverage.
[arguments]: Disable test_reporter_with_branches, which fails for
unknown reasons.
2023-03-18 10:41:35 +01:00
a7c96167ae
gnu: python-typeguard: Python 3.10 compatibility.
...
* gnu/packages/patches/python-typeguard-python3.10.patch: New file.
* gnu/local.mk: Register it.
* gnu/packages/python-xyz.scm (python-typeguard): Use it.
2023-03-18 10:41:35 +01:00
483124bc48
gnu: libaio: Fix tests on 32 bit systems.
...
* gnu/packages/patches/libaio-32bit-test.patch: New file.
* gnu/packages/linux.scm (libaio): Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
2023-03-18 10:36:22 +01:00
Ricardo Wurmus
Lars-Dominik Braun
Liliana Marie Prikler
Ekaitz Zarraga
Efraim Flashner
Andreas Enge
Kaelyn Takata
Arun Isaac