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52199 Commits (ef4a5a858c7321053b79e733e4efbe232d79f83d)

Author SHA1 Message Date
Jan Wielkiewicz 8c98eb2808
gnu: jami: Add epoll support.
* gnu/packages/jami.scm (jami)[arguments]: Add epoll support on Linux systems.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:58 +02:00
Jan Wielkiewicz f06eefa31d
gnu: jami: Use gettext-minimal.
* gnu/packages/jami.scm (jami)[native-inputs]: Use "gettext-minimal" instead
of "gnu-gettext".

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:58 +02:00
Jan Wielkiewicz 2ff4e549bb
gnu: pjproject-jami: Update to 2.10.
* gnu/packages/telephony.scm (pjproject): Update to 2.10,
[source]: reorder "file-name" and "sha256" fields.
* gnu/packages/jami.scm (%jami-version): Update to 20200401.1.6f090d,
(pjproject-jami)[arguments]: apply patches related to 2.10.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:58 +02:00
Jan Wielkiewicz 7f8f39d344
gnu: jami: Make gettext a native input.
* gnu/packages/jami.scm (jami)[inputs]: Move "gettext" to ...
[native-inputs]: ... here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:58 +02:00
Jan Wielkiewicz 63e6f1cdee
gnu: libring: Add libnatpmp dependency.
This library isn't mandatory, but it works better with new
routers than libupnp.

* gnu/packages/jami.scm (libring)[inputs]: Add libnatpmp.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:57 +02:00
Jan Wielkiewicz f60699af61
gnu: jami: Create a jami-apply-dependency-patches procedure.
* gnu/packages/jami.scm (pjproject-jami)
[native-inputs]: Rename "savoir-faire-linux-patches" to "sfl-patches".
[arguments]: Move Jami patching procedure to ...
(jami-apply-dependency-patches): ... this new procedure.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:57 +02:00
Jan Wielkiewicz aaa199ca52
gnu: jami: Fix download.
The package name changed from Ring to Jami.  Package tarballs start now with
"jami_" prefix.  The "ring-release" folder is also deprecated, let's use the
"release" folder instead.

* gnu/packages/jami.scm (jami-source)[origin]:
Change the uri from "https://dl.jami.net/ring-release/tarballs/ring_"
to "https://dl.jami.net/release/tarballs/jami_".

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:57 +02:00
Jan Wielkiewicz 15c6e4260b
gnu: telephony: Move Jami and its dependencies to jami.scm.
Jami is a massive package and its developers modify many libraries. Keeping
them in a single file makes maintenance easier.

* gnu/packages/telephony.scm (%jami-version, jami-source,
pjproject-jami, libring, libringclient,
jami, jami-client-gnome): Move to ...
* gnu/packages/jami.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:57 +02:00
Jan Wielkiewicz 218ec70aee
gnu: opendht: Update to 2.0.0.
* gnu/packages/networking.scm (opendht): Update to 2.0.0.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:57 +02:00
Jan Wielkiewicz 798335cfbc
gnu: restinio: Update to 0.6.1.1.
* gnu/packages/networking.scm (restinio): Update to 0.6.1.1.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:57 +02:00
Jan Wielkiewicz 1d2366202a
gnu: libupnp: Update to 1.8.6.
* gnu/packages/upnp.scm (libupnp): Update to 1.8.6.
[source]: Use git-fetch on the new official repository.
[native-inputs]: Add autoconf, automake, libtool and pkg-config.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:57 +02:00
Jan Wielkiewicz a363978cb9
gnu: Add libnatpmp.
* gnu/packages/networking.scm (libnatpmp): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-05-02 12:04:56 +02:00
raingloom 807986a55f
gnu: Add f2fs-tools-static.
* gnu/packages/file-systems.scm (f2fs-tools/static): New public variable.

Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-05-02 11:49:04 +02:00
Pierre Neidhardt cc8f31bafb
gnu: emacs-exwm-edit: Update to 20200126.
* gnu/packages/emacs-xyz.scm (emacs-exwm-edit): Update to 20200126.
2020-05-02 11:03:26 +02:00
raingloom 27efeef306
linux-initrd: Add initial support for F2FS.
* gnu/system/linux-initrd.scm (file-system-type-modules): Add f2fs module.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-05-02 10:54:39 +02:00
raingloom 23b37c3d40
file-systems: Add support for F2FS.
* gnu/build/file-systems.scm (%f2fs-endianness): New syntax.
(f2fs-superblock?, read-f2fs-superblock, f2fs-superblock-uuid)
(f2fs-superblock-volume-name, check-f2fs-file-system): New procedures.
(%partition-label-readers, %partition-uuid-readers, check-file-system): Register them.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-05-02 10:49:24 +02:00
Pierre Langlois 5a0b78e62b
services: dnsmasq: Support the --address flag.
Introduce a new `addresses' field that translates to passing `--address='
multiple times to dnsmasq.

* gnu/services/dns.scm (<dnsmasq-configuration>): Add an addresses field.
(dnsmasq-shepherd-service): Match the addresses field and translate it to
multiple '--address=' flags.
* doc/guix.texi (DNS Services): Document it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-05-02 13:00:24 +08:00
Kyle Meyer f2531a254f
gnu: git-annex: Update to 8.20200501.
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200501.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-05-02 12:40:38 +08:00
Nicolas Goaziou 7e2e37edc2
gnu: emacs-parsebib: Add Texinfo markup.
* gnu/packages/emacs-xyz.scm (emacs-parsebib)
[synopsis]:
[description]: Add Texinfo markup.
2020-05-02 02:27:44 +02:00
Nicolas Goaziou b8642c5500
gnu: emacs-ebib: Add Texinfo markup in description.
* gnu/packages/emacs-xyz.scm (emacs-ebib)[description]: Add Texinfo markup.
2020-05-02 02:26:21 +02:00
Nicolas Goaziou 2e775ecc23
gnu: emacs-ebib: Update to 2.22.1.
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.22.1.
2020-05-02 02:19:59 +02:00
Nicolas Goaziou 9dbcc8d0d5
gnu: emacs-parsebib: Update to 2.3.3.
* gnu/packages/emacs-xyz.scm (emacs-parsebib): Update to 2.3.3.
2020-05-02 02:19:16 +02:00
Jonathan Frederickson ecd56cd1b2
gnu: Add ladspa-bs2b
* gnu/packages/audio.scm (ladspa-bs2b): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-05-01 17:30:16 -04:00
Marius Bakke 934f0b32cf
gnu: icu4c: Update source URI.
The previous URL started serving a HTML page, which ultimately refers to
<https://github.com/unicode-org/icu/releases>.
Reported by butterypancake on #guix.

* gnu/packages/icu4c.scm (icu4c)[source](uri): Change to GitHub.
2020-05-01 22:36:47 +02:00
Nicolas Goaziou 26e11cffb9
gnu: xfe: Use a mirror:// URL.
* gnu/packages/disk.scm (xfe)[source]: Use a mirror://sourceforge URL.
2020-05-01 22:21:19 +02:00
Nicolas Goaziou ee2649e135
gnu: emacs-emms: Update to 5.4.
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 5.4.
2020-05-01 22:12:22 +02:00
Raghav Gururajan 7dfc7c5398
gnu: xfe: Fix configuration and icons.
* gnu/packages/disk.scm (xfe)[arguments]<#:make-flags>: Remove
BASH_COMPLETION_DIR.
[arguments]<#:phases>[patch-xferc-path]: Remove phase.
[arguments]<#:phases>[patch-xfe-paths]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-05-01 19:19:00 +02:00
Tobias Geerinckx-Rice 7e5c767705
gnu: serd: Update to 0.30.4.
* gnu/packages/rdf.scm (serd): Update to 0.30.4.
2020-05-01 17:32:08 +02:00
Tobias Geerinckx-Rice eeec9973bc
gnu: quazip: Update to 0.9.
* gnu/packages/compression.scm (quazip): Update to 0.9.
2020-05-01 17:25:44 +02:00
Tobias Geerinckx-Rice ebf6431b9b
gnu: scummvm: Update to 2.1.2.
* gnu/packages/emulators.scm (scummvm): Update to 2.1.2.
2020-05-01 17:25:44 +02:00
Tobias Geerinckx-Rice 53b9cdd58e
gnu: teeworlds: Update to 0.7.5.
* gnu/packages/games.scm (teeworlds): Update to 0.7.5.
2020-05-01 17:25:44 +02:00
Tobias Geerinckx-Rice 4b50aaade4
gnu: crispy-doom: Update to 5.8.0.
* gnu/packages/games.scm (crispy-doom): Update to 5.8.0.
2020-05-01 17:25:44 +02:00
Tobias Geerinckx-Rice ee75b46fb4
gnu: five-or-more: Update to 3.32.2.
* gnu/packages/gnome.scm (five-or-more): Update to 3.32.2.
2020-05-01 17:25:43 +02:00
Nicolas Goaziou 5bd2d42e8e
gnu: scintilla: Update to 4.3.3.
* gnu/packages/text-editors.scm (scintilla): Update to 4.3.3.
2020-05-01 16:42:53 +02:00
Raghav Gururajan 8546f4da5b
gnu: udevil: Fix loading of setuid-programs.
* gnu/packages/disk.scm (udevil)[arguments]<#:configure-flags>: Add
"--with-mount-prog", "--with-umount-prog", "--with-losetup-prog",
"--with-setfacl-prog".
[arguments]<#:phases>[patch-udevil-reference]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-05-01 16:38:22 +02:00
Nicolas Goaziou 3e2d65aecb
gnu: frescobaldi: Use HTTPS home page URI.
* gnu/packages/music.scm (frescobaldi)[home-page]: Use HTTPS URI.
2020-05-01 16:37:32 +02:00
Nicolas Goaziou 88c586f324
gnu: frescobaldi: Update to 3.1.2.
* gnu/packages/music.scm (frescobaldi): Update to 3.1.2.
2020-05-01 16:37:07 +02:00
Nicolas Goaziou a5e4713015
gnu: fet: Update to 5.44.4.
* gnu/packages/education.scm (fet): Update to 5.44.4.
[description]: Remove uninformative part.
2020-05-01 16:23:52 +02:00
Nicolas Goaziou a978840cb2
gnu: emacs-web-mode: Update to 17.
* gnu/packages/emacs-xyz.scm (emacs-web-mode): Update to 17.
[description]: "web-mode" -> "web mode".
2020-05-01 16:14:58 +02:00
Nicolas Goaziou 0f9331e486
gnu: Update emacs-modus-themes.
* gnu/packages/emacs-xyz.scm (emacs-modus-operandi-theme):
(emacs-modus-vivendi-theme): Update to 0.8.0.
2020-05-01 16:10:15 +02:00
Florian Pelz fd31731b9d
system: Blacklist usbkbd kernel module in default kernel-arguments.
This is said to avoid a race with the usbhid kernel module.
See <https://issues.guix.gnu.org/35574#18>.

* gnu/system.scm (%default-modprobe-blacklist): Blacklist it.
2020-05-01 12:27:52 +00:00
Raghav Gururajan 53e8b852e9
gnu: spacefm: Fix privilege and disk management.
* gnu/packages/lxde.scm (spacefm)[inputs]: Remove dbus.
Add ktsuss.
[arguments]<#:phases>[patch-source-files]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-05-01 14:10:33 +02:00
Florian Pelz e06664da02
system: Blacklist usbmouse kernel module in default kernel-arguments.
This avoids a race with the bcm5974 kernel module.
Fixes <https://bugs.gnu.org/35574>.

* gnu/system.scm (%default-modprobe-blacklist): New variable.
(<operating-system>)[kernel-arguments]: Default to ...
(%default-kernel-arguments): ... this new variable.
* doc/guix.texi (operating-system Reference): Document the change.
2020-05-01 08:46:59 +00:00
Florian Pelz 73ddcab607
Revert "install: Pass "modprobe.blacklist=radeon"."
This reverts commit 7859191210, which is no longer
needed since uvesafb was added in 557e6820a7.
2020-05-01 08:26:07 +00:00
Leo Famulari 5af110868c
gnu: VLC: Update to 3.0.10.
* gnu/packages/patches/vlc-fix-test_libvlc_slaves.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (vlc): Update to 3.0.10.
[source]: Remove obsolete patch.
[arguments]: Remove obsolete workarounds for libssh and fribidi
compatibility issues in 'patch-source' phase.
2020-04-30 21:31:15 -04:00
Leo Famulari 65fd3f0ac3
gnu: libmicrodns: Update to 0.1.2 [security fixes].
This fixes CVE-2020-6071, CVE-2020-6072, CVE-2020-6073, CVE-2020-6077,
CVE-2020-6078, and CVE-2020-6079.

* gnu/packages/dns.scm (libmicrodns): Update to 0.1.2.
[source]: Build from a tarball.
[build-system]: Use the meson-build-system.
[native-inputs]: Remove field.
2020-04-30 21:31:11 -04:00
Brice Waegeneire 02ee43e486
gnu: Add usbguard.
* gnu/packages/hardware.scm (usbguard): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:04 +02:00
Brice Waegeneire 22df0a1f59
gnu: Add libqb.
* gnu/packages/hardware.scm (libqb): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:04 +02:00
Brice Waegeneire 135c1e0e43
gnu: umockdev: Fix test.
* gnu/packages/check.scm (umockdev)[inputs]: Remove
'gobject-introspection'.
[arguments]: Replace phase 'skip-broken-test' by 'fix-test'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:04 +02:00
Jean-Baptiste Note 524e5fe56b
gnu: Add apt-mirror.
* gnu/packages/debian.scm (apt-mirror): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:03 +02:00
Rene Saavedra 7ff2159b10
gnu: balsa: Update to 2.6.0.
* gnu/packages/mail.scm (balsa): Update to 2.6.0.
[inputs]: Replace gmime-2.6 with gmime; add libical and libsecret.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:03 +02:00
Marius Bakke 229f4fa952
gnu: emacs-toml-mode: Fix syntax error in description.
* gnu/packages/emacs-xyz.scm (emacs-toml-mode)[description]: Replace usage of
@acronym with @dfn to work around a Guile Texinfo limitation.
2020-04-30 23:31:53 +02:00
Vagrant Cascadian ac4fefb298
gnu: diffoscope: Update to 143.
* gnu/packages/diffoscope (diffoscope): Update to 143.
  [native-inputs]: Add openssl and python-h5py.
  [arguments] Add openssl to add-known-tools phase.
  [arguments] Remove hdf5 from add-known-tools phase, added upstream.
2020-04-30 13:13:07 -07:00
Leo Famulari 2a94f72ade
gnu: MPD: Update to 0.21.23.
* gnu/packages/mpd.scm (mpd): Update to 0.21.23.
2020-04-30 14:17:49 -04:00
Simon Josefsson 194cb75d85
gnu: libntlm: Update to 1.6 [fixes CVE-2019-17455].
* gnu/packages/gsasl.scm (libntlm): Update to 1.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-30 12:50:06 -04:00
Pierre Neidhardt 192177b049
gnu: sbcl-osicat: Fix library path.
* gnu/packages/lisp-xyz.scm (sbcl-osicat)[arguments]: Replace 'cleanup phase
  to preserve the location of libosicat.so so that it can be found when
  loading the system.
2020-04-30 16:57:40 +02:00
Ricardo Wurmus 24599740e7
gnu: r-vgam: Update to 1.1-3.
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-3.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2020-04-30 15:37:22 +02:00
Ricardo Wurmus 0ffd9701f5
gnu: r-rcpparmadillo: Update to 0.9.870.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.870.2.0.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 599f2b50de
gnu: r-spatial: Update to 7.3-12.
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-12.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus aad9233c1d
gnu: r-nnet: Update to 7.3-14.
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-14.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 9c313889f1
gnu: r-kernsmooth: Update to 2.23-17.
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-17.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 1cf9a5cd75
gnu: r-foreign: Update to 0.8-79.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-79.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 175ec5eff4
gnu: r-class: Update to 7.3-17.
* gnu/packages/statistics.scm (r-class): Update to 7.3-17.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus b2c95239e0
gnu: r-mass: Update to 7.3-51.6.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.6.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 1b6434a324
gnu: r-boot: Update to 1.3-25.
* gnu/packages/statistics.scm (r-boot): Update to 1.3-25.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus c54b41093d
gnu: r-kutils: Update to 1.70.
* gnu/packages/cran.scm (r-kutils): Update to 1.70.
[propagated-inputs]: Remove r-lavaan.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 2a749c8596
gnu: r-univoutl: Update to 0.2.
* gnu/packages/cran.scm (r-univoutl): Update to 0.2.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus d7a29bd586
gnu: r-graphlayouts: Update to 0.7.0.
* gnu/packages/cran.scm (r-graphlayouts): Update to 0.7.0.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus aa180e9e03
gnu: r-systemfonts: Update to 0.2.1.
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.1.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 8dfa9ab05a
gnu: r-ggfortify: Update to 0.4.10.
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.10.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 7d1e02c872
gnu: r-dalex: Update to 1.2.1.
* gnu/packages/cran.scm (r-dalex): Update to 1.2.1.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus 1514fa85e4
gnu: r-arm: Update to 1.11-1.
* gnu/packages/cran.scm (r-arm): Update to 1.11-1.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus b5ea7affcf
gnu: r-usethis: Update to 1.6.1.
* gnu/packages/cran.scm (r-usethis): Update to 1.6.1.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus 78b686824d
gnu: r-rootsolve: Update to 1.8.2.1.
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.2.1.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus 0ec790f82d
gnu: r-proxy: Update to 0.4-24.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-24.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus 0590673090
gnu: r-pkgbuild: Update to 1.0.7.
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.7.
2020-04-30 15:37:20 +02:00
Roel Janssen eca648b65b
gnu: Add miniasm.
* gnu/packages/bioinformatics.scm (miniasm): New variable.
2020-04-30 15:30:16 +02:00
Ricardo Wurmus e174231863
gnu: Add one more missing module import.
This is a follow-up to commit 61fc72d3ac.

* gnu/packages/backup.scm: Add missing import of (gnu packages protobuf).
2020-04-30 14:44:45 +02:00
Ricardo Wurmus 4ac3996036
gnu: Add missing module import.
This is a follow-up to commit 61fc72d3ac.

* gnu/packages/backup.scm: Add missing import of (guix build-system cmake).
2020-04-30 14:41:53 +02:00
Nicolas Goaziou 61fc72d3ac
gnu: Add zbackup.
* gnu/packages/backup.scm (zbackup): New variable.
2020-04-30 14:04:05 +02:00
Ricardo Wurmus cf1ae79375
gnu: python2-pysnptools: Update to 0.4.11.
* gnu/packages/python-xyz.scm (python2-pysnptools): Update to 0.4.11;
implement in terms of...
(python-pysnptools): ...this new variable.
[propagated-inputs]: Add python-dill, python-h5py, and python-psutil.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus 46d07f8472
gnu: kaldi-gstreamer-server: Fix bug.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]: Patch
master_server.py before build.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus cb44af24c8
gnu: kaldi-gstreamer-server: Use Tornado 6.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Replace
python-tornado with python-tornado-6.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus 7395047017
gnu: Add python-tornado-6.
* gnu/packages/python-web.scm (python-tornado-6): New variable.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus 4a148c6da3
gnu: python2-warpedlmm: Fix build.
* gnu/packages/bioinformatics.scm (python2-warpedlmm)[propagated-inputs]: Add
python2-weave.
[arguments]: Disable tests and add "use-weave" phase.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus ed33317893
gnu: Add python2-weave.
* gnu/packages/python-science.scm (python2-weave): New variable.
2020-04-30 13:08:33 +02:00
Eric Brown 1b73fbdf5e
gnu: Add r-rserve.
* gnu/packages/cran.scm (r-rserve): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-30 13:08:33 +02:00
Guillaume Le Vaillant f03e5ca59f
gnu: gnuradio: Fix runtime python environment for plugins.
* gnu/packages/radio.scm (gnuradio)[native-search-paths]: Add PYTHONPATH.
  [native-inputs]: Move python ...
  [inputs]: ... here.
2020-04-30 10:09:15 +02:00
Mark H Weaver 89ea0415b3
gnu: linux-libre: Update to 5.4.36.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.36.
(linux-libre-5.4-pristine-source): Update hash.
2020-04-29 22:13:56 -04:00
Mark H Weaver 09b87e503d
gnu: linux-libre@5.6: Update to 5.6.8.
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.8.
(linux-libre-5.6-pristine-source): Update hash.
2020-04-29 22:13:15 -04:00
Mark H Weaver 5bc78570b2
gnu: linux-libre@4.19: Update to 4.19.119.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.119.
(linux-libre-4.19-pristine-source): Update hash.
2020-04-29 22:12:10 -04:00
Ricardo Wurmus 851a3a779a
gnu: python-hacking: Update to 1.1.0.
* gnu/packages/openstack.scm (python-hacking): Update to 1.1.0.
[arguments]: Add "delete-broken-test" phase.
[propagated-inputs]: Replace python-flake8-2.5 with python-flake8-2.6.
2020-04-30 00:05:15 +02:00
Ricardo Wurmus 7b0e0fd5a2
gnu: python-flake8-2.5: Update to 2.6.2.
* gnu/packages/python-xyz.scm (python-flake8-2.5): Update to 2.6.2; rename
it...
(python-flake8-2.6): ...to this.
[arguments]: Add phase "use-later-pycodestyles", and move "check" phase after
"install".
[propagated-inputs]: Explicitly list python-pycodestyle, python-entrypoints,
python-pyflakes-1.2, and python-mccabe.
2020-04-30 00:05:15 +02:00
Ricardo Wurmus 7fea8e076f
gnu: Remove python2-flake8-2.5.
* gnu/packages/python-xyz.scm (python2-flake8-2.5): Remove variable.
(python-flake8-2.5)[properties]: Remove.
2020-04-30 00:05:15 +02:00
Ricardo Wurmus a655924009
gnu: Replace python-pyflakes-0.8.1 with python-pyflakes-1.2.
* gnu/packages/python-xyz.scm (python-pyflakes-0.8.1): Remove variable.
(python-pyflakes-1.2): New variable.
* gnu/packages/openstack.scm (python-hacking)[propagated-inputs]: Replace
python-pyflakes-0.8.1 with python-pyflakes-1.2.
2020-04-30 00:05:14 +02:00
Ricardo Wurmus 37130eccd2
gnu: Remove python2-pyflakes-0.8.1.
* gnu/packages/python-xyz.scm (python2-pyflakes-0.8.1): Remove variable.
2020-04-30 00:05:14 +02:00
Ricardo Wurmus 7e3ddb6904
gnu: Add python-cmd2.
* gnu/packages/python-xyz.scm (python-cmd2): New variable.
2020-04-30 00:05:14 +02:00
Ricardo Wurmus 88f8a7c610
gnu: Add python-voluptuous.
* gnu/packages/python-xyz.scm (python-voluptuous): New variable.
2020-04-30 00:05:14 +02:00
Ricardo Wurmus ad2736717a
gnu: python-psutil: Update to 5.7.0.
* gnu/packages/python-xyz.scm (python-psutil): Update to 5.7.0.
2020-04-30 00:05:10 +02:00
Marcin Karpezo fd65311cf4
gnu: Add sbcl-stumpwm-pass.
* gnu/packages/wm.scm (sbcl-stumpwm-pass): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-04-30 00:25:15 +03:00
Leo Famulari fb5bb6bd9e
gnu: Magic Wormhole: Update to 0.12.0.
* gnu/packages/magic-wormhole.scm (magic-wormhole): Update to 0.12.0.
2020-04-29 16:52:29 -04:00
Leo Famulari 718c8837f9
gnu: magic-wormhole-transit-relay: Update to 0.2.1.
* gnu/packages/magic-wormhole.scm (magic-wormhole-transit-relay): Update to
0.2.1.
2020-04-29 16:52:29 -04:00
Leo Famulari c5c25b39eb
gnu: magic-wormhole-mailbox-server: Update to 0.4.1.
* gnu/packages/magic-wormhole.scm (magic-wormhole-mailbox-server): Update to
0.4.1.
2020-04-29 16:52:25 -04:00
Marcin Karpezo e118837ede
gnu: Add aspell-dict-pl.
* gnu/packages/aspell.scm (aspell-dict-pl): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-29 22:50:20 +03:00
Lars-Dominik Braun b9d96ed773
gnu: python-tortoise-orm: Update to 0.16.7 [security fixes].
* gnu/packages/databases.scm (python-tortoise-orm)[source]: Update to 0.16.7.
[propagated-inputs]: Propagate python-ciso8601, which is required in setup.py.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-29 15:12:15 -04:00
Lars-Dominik Braun 510472f865
gnu: python-pypika: Update to 0.37.2.
* gnu/packages/databases.scm (python-pypika): Update to 0.37.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-29 15:12:15 -04:00
Lars-Dominik Braun 4b800bff80
gnu: python-aiosqlite: Update to 0.12.0.
* gnu/packages/databases.scm (python-aiosqlite): Update to 0.12.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-29 15:12:15 -04:00
Leo Famulari f224a8bb79
gnu: OpenLDAP: Update to 2.4.50 [fixes CVE-2019-{13057,13565}].
* gnu/packages/openldap.scm (openldap)[replacement]: Use openldap-2.4.50.
(openldap/fixed): Replace with ...
(openldap-2.4.50): ... new variable.
* gnu/packages/patches/openldap-CVE-2020-12243.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-04-29 13:44:10 -04:00
Tobias Geerinckx-Rice 19987f5efe
gnu: foo2zjs: Update to 20200426.
* gnu/packages/cups.scm (foo2zjs): Update to 20200426.
2020-04-29 19:31:23 +02:00
Oleg Pykhalov 587ccf4c79
gnu: emacs-vterm: Update to 0-1.e63bd65.
* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0-1.e63bd65.
2020-04-29 20:10:33 +03:00
pinoaffe 1cc9947a53
gnu: Add emacs-kakoune.
* gnu/packages/emacs-xyz.scm (emacs-kakoune): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-29 16:33:35 +02:00
pinoaffe 6d25f29143
gnu: Add emacs-ryo-modal.
* gnu/packages/emacs-xyz.scm (emacs-ryo-modal): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-29 16:29:53 +02:00
Masaya Tojo 373c0dc95c
gnu: Add emacs-twittering-mode.
* gnu/packages/emacs-xyz.scm (emacs-twittering-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-29 16:26:21 +02:00
Mathieu Othacehe c537d2bcb7
tests: install: Fix device usage.
This is a follow-up of a860eddbbd. Guided
installation tests are now run from an ISO image. Hence the main block device
is vda and not vdb anymore.

* gnu/tests/install.scm (installation-target-os-for-gui-tests): Use
%minimal-os-on-vda instead of %minimal-os.
(%minimal-os-on-vda): Make sure that it replicates the config of %minimal-os.
2020-04-29 15:30:14 +02:00
Ricardo Wurmus e9f93cd5f7
gnu: Add python-sphinx-autobuild.
* gnu/packages/sphinx.scm (python-sphinx-autobuild): New variable.
2020-04-29 13:46:07 +02:00
Ricardo Wurmus ff5ca61d15
gnu: Add python-doc8.
* gnu/packages/python-xyz.scm (python-doc8): New variable.
2020-04-29 13:46:07 +02:00
Ricardo Wurmus d0e0b865e1
gnu: Add python-livereload.
* gnu/packages/python-web.scm (python-livereload): New variable.
2020-04-29 13:46:07 +02:00
Ricardo Wurmus d08782d16c
gnu: Add python-port-for.
* gnu/packages/python-web.scm (python-port-for): New variable.
2020-04-29 13:46:07 +02:00
Ricardo Wurmus 39a96b99fe
gnu: Add python-restructuredtext-lint.
* gnu/packages/python-xyz.scm (python-restructuredtext-lint): New variable.
2020-04-29 13:46:07 +02:00
Raghav Gururajan 27cb52a20b
gnu: gnome-calendar: Propagate evolution-data-server.
* gnu/packages/gnome.scm (gnome-calendar)[inputs]: Move evolution-data-server
from here...
[propagated-inputs]: ...to here.

Fixes <https://bugs.gnu.org/40686>.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-29 13:29:16 +02:00
Ricardo Wurmus e979cea905
gnu: Remove python2-ws4py-for-kaldi-gstreamer-server.
* gnu/packages/python-web.scm (python2-ws4py-for-kaldi-gstreamer-server):
Remove variable.
2020-04-29 13:29:16 +02:00
Ricardo Wurmus 1228c2abcf
gnu: kaldi-gstreamer-server: Update to 0-2.f68cab4.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to
0-2.f68cab4.
[inputs]: Replace python-2 with python-wrapper, python2-pygobject with
python-pygobject, python2-pyyaml with python-pyyaml, and python2-tornado with
python-tornado; remove python2-ws4py-for-kaldi-gstreamer-server and
python2-futures.
2020-04-29 13:29:16 +02:00
Brice Waegeneire 8fe681b9ff
gnu: Add edid-decode.
* gnu/packages/hardware.scm (edid-decode): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-29 11:38:42 +02:00
Alexandros Theodotou 4f0f46e4af
gnu: zrythm: Update to 0.8.333.
* gnu/packages/music.scm (zrythm): Update to 0.8.333.
[inputs]: Add new dependencies graphviz and gtksourceview.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-29 10:58:05 +02:00
Paul Garlick da6539d17b
gnu: ikiwiki: Update to 3.20200202.3.
* gnu/packages/web.scm (ikiwiki): Update to 3.20200202.3.
2020-04-29 09:37:15 +01:00
Paul Garlick 2933cdf88e
gnu: ikiwiki: Translate documentation.
* gnu/packages/web.scm (ikiwiki)[inputs]: Add po4a.
[arguments]<#:phases>[patch-Makefile]: Rename to...
[arguments]<#:phases>[patch-Makefiles]: ...this.  Add build environment
paths to the PERL5LIB environment variable that is used by the 'po2wiki'
script.
2020-04-29 09:37:14 +01:00
Paul Garlick cf47084a88
gnu: ikiwiki: Add missing inputs.
* gnu/packages/web.scm (ikiwiki)[inputs]: Add perl-authen-passphrase,
perl-file-mimeinfo, perl-mail-sendmail and perl-xml-twig.
2020-04-29 09:37:13 +01:00
Paul Garlick b7392ecbba
gnu: ikiwiki: Propagate some inputs.
* gnu/packages/web.scm (ikiwiki)[inputs]: Move perl-html-parser,
perl-html-scrubber, perl-html-template, perl-json,
perl-text-markdown-discount, perl-uri and perl-yaml-libyaml to...
[propagated-inputs]: ...here.  New field.
2020-04-29 09:37:12 +01:00
Paul Garlick 732ffac3bc
gnu: ikiwiki: Build perl inputs for target architecture.
* gnu/packages/web.scm (ikiwiki)[native-inputs]: Move perl dependencies ...
[inputs]: ...to here.
2020-04-29 09:37:11 +01:00
Paul Garlick add3e168bb
gnu: ikiwiki: Fetch sources from git repository.
* gnu/packages/web.scm (ikiwiki)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[source](snippet): New field.
[arguments]<#:phases>[set-modification-times]: New phase.
2020-04-29 09:36:29 +01:00
Guillaume Le Vaillant cf480830e2
gnu: gnuradio: Fix search paths for third-party blocks.
* gnu/packages/radio.scm (gnuradio)[native-search-paths]: Add definition of
  the GRC_BLOCKS_PATH variable.
2020-04-29 10:23:23 +02:00
Mathieu Othacehe be3abf28af
tests: install: Fix gui-installed-os test.
This is a follow-up of a860eddbbd. If using an
ISO, the main disk is vda and not vdb anymore.

* gnu/tests/install.scm (installation-target-os-for-gui-tests): Use vda2 as
swap partition.
2020-04-29 10:12:55 +02:00
Mathieu Othacehe ae1a0f7583
tests: install: Increase virtual machine RAM.
It seems that 'guix system init' is consuming more than the 800M of RAM
currently allocated. Until this is understood, bump the limit to 1.2G.

Reported here:
https://lists.gnu.org/archive/html/bug-guix/2020-04/msg00519.html

* gnu/tests/install.scm (run-install): Bump RAM to 1.2G.
2020-04-29 10:08:54 +02:00
Guillaume Le Vaillant f93eebbf9c
gnu: Add xnec2c.
* gnu/packages/radio.scm (xnec2c): New variable.
2020-04-29 01:17:37 +02:00
Ludovic Courtès 1797fe1321
gnu: guile-json: Update to 3.5.0.
* gnu/packages/guile.scm (guile-json-3): Update to 3.5.0.
2020-04-28 23:28:17 +02:00
Ludovic Courtès ce0f1b1eef
gnu: guix: Update to 619f918.
* gnu/packages/package-management.scm (guix): Update to 619f918.
2020-04-28 23:28:17 +02:00
Efraim Flashner 0b25812872
gnu: openldap: Fix CVE-2020-12243.
* gnu/packages/openldap.scm (openldap)[replacement]: New field.
(openldap/fixed): New variable.
* gnu/packages/patches/openldap-CVE-2020-12243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2020-04-28 22:52:20 +03:00
Efraim Flashner cd8c419722
gnu: valgrind: Update source uri.
* gnu/packages/valgrind.scm (valgrind)[source]: Remove valgrind host,
add sourceware host.
[home-page]: Use https.
2020-04-28 22:33:40 +03:00
Pierre Neidhardt 27112236ce
gnu: sbcl: Update to 2.0.4.
* gnu/packages/lisp.scm (sbcl): Update to 2.0.4.
2020-04-28 21:10:46 +02:00
Pierre Neidhardt a84b7a4af5
gnu: sbcl-parenscript: Update to 2.7.1.
* gnu/packages/lisp-xyz.scm (sbcl-parenscript): Update to 2.7.1.
2020-04-28 21:10:46 +02:00
Diego Nicola Barbato 19e1f12ce4
gnu: emacs-telega: Test Emacs environment on startup.
Print a more helpful error message when someone attempts to run Telega on an
incompatible Emacs (e.g a 32-bit Emacs without wide ints).

* gnu/packages/patches/emacs-telega-test-env.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs-xyz.scm (emacs-telega)[source]: Use it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-28 20:44:30 +03:00
Diego Nicola Barbato a663b7040c
gnu: emacs-telega: Build with emacs-wide-int on 32-bit systems.
Fixes <https://bugs.gnu.org/39406>.
Reported by <lmedeiros@riseup.net>.

* gnu/packages/emacs-xyz.scm (emacs-telega)[native-inputs]: Replace emacs with
emacs-wide-int on 32-bit systems.  This is needed because Telega requires
64-bit wide ints.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-28 20:44:30 +03:00
Diego Nicola Barbato abbca232ca
gnu: Add emacs-wide-int.
* gnu/packages/emacs.scm (emacs-wide-int): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-28 20:44:27 +03:00
Christopher Lemmer Webber b2c1d4a273
gnu: Add emacs-magit-annex.
* gnu/packages/emacs-xyz.scm (emacs-magit-annex): New variable.
2020-04-28 12:30:41 -04:00
Alexandros Theodotou ae0f26b8f4
gnu: lv2: Update to 1.18.0.
* gnu/packages/audio.scm (lv2): Update to 1.18.0.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-28 18:20:28 +02:00
Nicolas Goaziou 3b33e0e4ba
gnu: kakoune: Update to 2020.01.16.
* gnu/packages/text-editors.scm (kakoune): Update to 2020.01.16.
2020-04-28 18:18:44 +02:00
John Soo 9615c8511f
gnu: emacs-evil-org: Update to 1.0.2.
* gnu/packages/emacs-xyz.scm (emacs-evil-org): Update to 1.0.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-28 17:30:50 +02:00
Joseph LaFreniere f15d324afa
gnu: emacs-sx: Update to 20191229.
* gnu/packages/emacs-xyz.scm (emacs-sx): Update to 20191229.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-28 17:29:51 +02:00
Joseph LaFreniere b3d04190f4
gnu: Add emacs-toml-mode.
* gnu/packages/emacs-xyz.scm (emacs-toml-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-28 17:27:47 +02:00
Marius Bakke 085948fbfc
gnu: ungoogled-chromium: Update to 81.0.4044.129-0.c2a89fb [security fixes].
This fixes CVE-2020-6462 and CVE-2020-6461.

* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.129.
(%ungoogled-revision): Set to c2a89fb6b5b559c826796c811741fa8ed3e11de8.
(%chromium-origin, %ungoogled-origin): Update hashes.
2020-04-28 14:38:38 +02:00
Ricardo Wurmus 545e12f40d
gnu: Add variant-tools.
* gnu/packages/bioinformatics.scm (variant-tools): New variable.
2020-04-28 12:23:28 +02:00
Ricardo Wurmus 0b2c883828
gnu: Add hdf5-blosc.
* gnu/packages/maths.scm (hdf5-blosc): New variable.
2020-04-28 12:23:28 +02:00
Ricardo Wurmus 9a2fcb6325
gnu: Add c-blosc.
* gnu/packages/compression.scm (c-blosc): New variable.
2020-04-28 12:23:28 +02:00
Boris A. Dekshteyn 83812f34d7
gnu: Add kbdd-0.7.1
* gnu/packages/xdisorg.scm (kbdd): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-28 11:51:06 +02:00
Pierre Neidhardt 8ac4be51de
gnu: ecl: Update to 20.4.24.
* gnu/packages/lisp.scm (ecl): Update to 20.4.24.
[native-inputs]: Add texinfo to make the manual.
[license]: Set to lgpl2.1+.
2020-04-28 11:47:46 +02:00
Pierre Neidhardt 143eaa82d6
gnu: sbcl-cl-cffi-gtk: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:46 +02:00
Pierre Neidhardt 80d8c00c84
gnu: sbcl-cl-cffi-gtk-gdk: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt 2666a3361e
gnu: sbcl-cl-cffi-gtk-gdk-pixbuf: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk-pixbuf)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt d27f033f97
gnu: sbcl-cl-cffi-gtk-pango: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-pango)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt 8f46a9d67f
gnu: sbcl-cl-cffi-gtk-cairo: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-cairo)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt 6a7f366864
gnu: sbcl-cl-cffi-gtk-gio: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gio)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt eac71f54fe
gnu: sbcl-cl-cffi-gtk-gobject: Link source to parent to reduce closure size.
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gobject)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28 11:47:45 +02:00
Pierre Neidhardt ef3cc2d883
gnu: Add emacs-trashed.
* gnu/packages/emacs-xyz.scm (emacs-trashed): New variable.
2020-04-28 11:47:45 +02:00
Guillaume Le Vaillant 62d45e463c
gnu: gnuradio-osmosdr: Add hackrf support.
* gnu/packages/radio.scm (gnuradio-osmosdr)[inputs]: Add hackrf.
2020-04-28 10:17:08 +02:00
Christopher Howard 79c4fb4f36
gnu: Add hackrf.
* gnu/packages/radio.scm (hackrf): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2020-04-28 10:17:08 +02:00
Roel Janssen 0ae8505288
gnu: hpcguix-web: Use guile3.0-guix.
* gnu/packages/web.scm (hpcguix-web): Update to latest revision and use
  guile3.0 inputs.
2020-04-28 10:13:30 +02:00
Konrad Hinsen d9e9a26176
gnu: python-scikit-learn: Make python-joblib a propagated input.
* gnu/packages/machine-learning.scm (python-scikit-learn)
[native-inputs]: Move 'python-joblib' to ...
[propagated-inputs]: ... here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-28 09:34:29 +02:00
Ricardo Wurmus b3cf5f8601
gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef.
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-2.cb227ef.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 0877b74f6e
gnu: kaldi: Update to 0-2.d4791c0.
* gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 9c726c485a
gnu: r-hdf5array: Update to 1.14.4.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.4.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus cda0683295
gnu: r-seurat: Update to 3.1.5.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5.
[propagated-inputs]: Remove r-metap.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus ed720abc26
gnu: r-topicmodels: Update to 0.2-11.
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 1d9e71ed29
gnu: r-stopwords: Update to 2.0.
* gnu/packages/cran.scm (r-stopwords): Update to 2.0.
[propagated-inputs]: Add r-desc and r-usethis.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 2c439cae92
gnu: r-fda: Update to 5.1.4.
* gnu/packages/cran.scm (r-fda): Update to 5.1.4.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus e1fe5e9bed
gnu: r-abtest: Update to 0.2.1.
* gnu/packages/cran.scm (r-abtest): Update to 0.2.1.
[propagated-inputs]: Add r-qgam; remove r-vgam.
2020-04-28 08:44:04 +02:00
Ricardo Wurmus 169f9fe13a
gnu: Add r-qgam.
* gnu/packages/cran.scm (r-qgam): New variable.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 5ffe706b84
gnu: r-systemfonts: Update to 0.2.0.
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0.
[inputs]: Remove freetype.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 8165bf6d90
gnu: r-dalex: Update to 1.2.0.
* gnu/packages/cran.scm (r-dalex): Update to 1.2.0.
[propagated-inputs]: Add r-ibreakdown and r-ingredients.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 1816cb262c
gnu: r-rex: Update to 1.2.0.
* gnu/packages/cran.scm (r-rex): Update to 1.2.0.
[propagated-inputs]: Remove r-magrittr.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 838ec254a0
gnu: r-optparse: Update to 1.6.6.
* gnu/packages/cran.scm (r-optparse): Update to 1.6.6.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus bf4e440c19
gnu: r-sf: Update to 0.9-2.
* gnu/packages/cran.scm (r-sf): Update to 0.9-2.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 5123ec7858
gnu: r-future-apply: Update to 1.5.0.
* gnu/packages/cran.scm (r-future-apply): Update to 1.5.0.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus c6eb1fe616
gnu: r-etm: Update to 1.1.
* gnu/packages/cran.scm (r-etm): Update to 1.1.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus fbcbf8d586
gnu: r-future: Update to 1.17.0.
* gnu/packages/cran.scm (r-future): Update to 1.17.0.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus d62d838bf9
gnu: r-protviz: Update to 0.6.4.
* gnu/packages/cran.scm (r-protviz): Update to 0.6.4.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 71c0a61cac
gnu: r-rgl: Update to 0.100.54.
* gnu/packages/cran.scm (r-rgl): Update to 0.100.54.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus e2a50e5ec4
gnu: r-ggeffects: Update to 0.14.3.
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.3.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 09410f17d2
gnu: r-bayestestr: Update to 0.6.0.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.6.0.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 27588b365f
gnu: r-emmeans: Update to 1.4.6.
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.6.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:03 +02:00
Ricardo Wurmus 09bb872aff
gnu: r-raster: Update to 3.1-5.
* gnu/packages/cran.scm (r-raster): Update to 3.1-5.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 35f84a7f27
gnu: r-insight: Update to 0.8.3.
* gnu/packages/cran.scm (r-insight): Update to 0.8.3.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus f1f77bb64e
gnu: r-tinytex: Update to 0.22.
* gnu/packages/cran.scm (r-tinytex): Update to 0.22.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus e965442b38
gnu: r-tsp: Update to 1.1-10.
* gnu/packages/cran.scm (r-tsp): Update to 1.1-10.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 839c39b178
gnu: r-broom: Update to 0.5.6.
* gnu/packages/cran.scm (r-broom): Update to 0.5.6.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 92d81a5e5b
gnu: r-distillery: Update to 1.0-7.
* gnu/packages/cran.scm (r-distillery): Update to 1.0-7.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 4c0cf66cfc
gnu: r-ff: Update to 2.2-14.2.
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.2.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus d911e22af3
gnu: r-powerlaw: Update to 0.70.6.
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6.
[propagated-inputs]: Remove r-vgam; add r-pracma.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 92f5ed2fd7
gnu: r-shinyfiles: Update to 0.8.0.
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 50f298a54f
gnu: Add r-ibreakdown.
* gnu/packages/cran.scm (r-ibreakdown): New variable.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus befa394f45
gnu: Add r-ingredients.
* gnu/packages/cran.scm (r-ingredients): New variable.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus d29cd83bd8
gnu: r-purrr: Update to 0.3.4.
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.4.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 0e3003930e
gnu: r-plotrix: Update to 3.7-8.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 67aced6323
gnu: r-withr: Update to 2.2.0.
* gnu/packages/statistics.scm (r-withr): Update to 2.2.0.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
Ricardo Wurmus 7ef5f77b91
gnu: r-xml2: Update to 1.3.2.
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
2020-04-28 08:44:01 +02:00
Ricardo Wurmus 568d1d7bfc
gnu: r-dbplyr: Update to 1.4.3.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3.
[propagated-inputs]: Add r-lifecycle.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:01 +02:00
Ricardo Wurmus 666d97964a
gnu: r-tibble: Update to 3.0.1.
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
2020-04-28 08:44:01 +02:00
Ricardo Wurmus 288ab9039b
gnu: r-foreign: Update to 0.8-78.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
2020-04-28 08:44:01 +02:00
Ricardo Wurmus c1dc7858d7
gnu: r-with-tests, r-minimal: Update to 4.0.0.
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0.
(r-with-tests)[arguments]: Add phase "set-locales".
[native-inputs]: Add texlive-ae, texlive-inconsolata, and
texlive-latex-xkeyval to texlive-union.
[inputs]: Replace pcre with pcre2.
2020-04-28 08:44:01 +02:00
Björn Höfling 89909327d0
gnu: stellarium: Update to 0.20.1.
* gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
2020-04-28 00:23:35 +02:00
Roel Janssen 78799a6fdc
gnu: Update minimap2 to 2.17.
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
2020-04-27 21:34:10 +02:00
Oleg Pykhalov 693d0fffc8
gnu: Add sbcl-stumpwm-swm-gaps.
* gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
2020-04-27 22:21:35 +03:00
Vincent Legoll bb6d9e2633
gnu: tarsplitter: Fix typo in description (spilt/split).
* gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
2020-04-27 20:43:32 +02:00
Alex McGrath 58a361fef4
gnu: Add wf-recorder.
* gnu/packages/video.scm (wf-recorder): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-27 18:22:56 +02:00
Raghav Gururajan c53886a55a
gnu: ktsuss: Use setuid "su" and "sudo" commands.
This has ktsudo actually gain root access.

* gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo}
file names, use the setuid' verrsions.
2020-04-27 18:17:24 +02:00
Boris A. Dekshteyn 138896e1ea
gnu: herbstluftwm: Update to 0.8.1
* gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-27 18:05:11 +02:00
Guillaume Le Vaillant f38ba7b65d
gnu: fldigi: Update to 4.1.12.
* gnu/packages/radio.scm (fldigi): Update to 4.1.12.
2020-04-27 16:54:34 +02:00
Jakub Kądziołka 2ef4d273d1
file-systems: mount the PID cgroup filesystem.
* gnu/system/file-systems.scm (%control-groups): Add "pids".
* gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO.

This has allowed me to make a specific configuration of nsjail work.
2020-04-27 14:14:47 +02:00
Roel Janssen 639ae3f20b
gnu: Add python-scikit-rebate.
* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
2020-04-27 13:54:43 +02:00
Roel Janssen ccf70a80a1
gnu: Add python-deeptools.
* gnu/packages/bioinformatics.scm (python-deeptools): New variable.
2020-04-27 13:43:05 +02:00
Roel Janssen c43edf6f30
gnu: Add python-deeptoolsintervals.
* gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable.
2020-04-27 13:39:25 +02:00
Roel Janssen 4c24186ae0
gnu: Add python-bitarray.
* gnu/packages/python-xyz.scm (python-bitarray): New variable.
2020-04-27 13:09:02 +02:00
Roel Janssen 06fc1a5142
gnu: Add r-cummerbund.
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
2020-04-27 11:46:08 +02:00
Roel Janssen 91370829f4
gnu: Add r-inum.
* gnu/packages/cran.scm (r-inum): New variable.
2020-04-27 11:15:38 +02:00
Roel Janssen 415176e89d
gnu: Add r-ggpmisc.
* gnu/packages/cran.scm (r-ggpmisc): New variable.
2020-04-27 11:05:49 +02:00
Roel Janssen 0c0ef9c5a6
gnu: Add r-coverageview.
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
2020-04-27 10:57:22 +02:00
Ricardo Wurmus d4f86c8b66
gnu: Add peek.
* gnu/packages/video.scm (peek): New variable.
2020-04-27 10:46:12 +02:00
Ricardo Wurmus c170a15996
gnu: emacs-org-reveal: Fix syntax error in description.
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo
syntax error.
2020-04-27 10:45:51 +02:00
Ricardo Wurmus 320dd1195e
gnu: Add texlive-inconsolata.
* gnu/packages/tex.scm (texlive-inconsolata): New variable.
2020-04-27 10:45:51 +02:00
Roel Janssen 8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
2020-04-27 10:43:51 +02:00
Roel Janssen cb1ab0352b
gnu: Add r-karyoploter.
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
2020-04-27 10:37:42 +02:00
Roel Janssen e658838c62
gnu: Add r-bezier.
* gnu/packages/cran.scm (r-bezier): New variable.
2020-04-27 10:28:50 +02:00
Roel Janssen e8d435f7a2
gnu: Add r-ideoviz.
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
2020-04-27 10:24:20 +02:00
Roel Janssen df6c7f0487
gnu: Add r-ecp.
* gnu/packages/cran.scm (r-ecp): New variable.
2020-04-27 10:18:48 +02:00
Roel Janssen 8521d93854
gnu: Add r-reordercluster.
* gnu/packages/cran.scm (r-reordercluster): New variable.
2020-04-27 10:11:21 +02:00
Maxim Cournoyer 9c63165d9e
gnu: liblinphone: Move documentation and tester to separate outputs.
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester"
outputs.
[phases]: Add a separate-outputs phase.  Move the
glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
2020-04-27 00:54:44 -04:00
Maxim Cournoyer 1ae4325734
gnu: liblinphone: Fix the input type of some dependencies.
Libraries being linked to such as libxml2, libiconv and zlib should appear as
'inputs' rather than 'native-inputs'.

* gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv,
libxml2 and zlib to...
[inputs]: ...here.  Move eudev, python-pystache and python-six to
native-inputs.
2020-04-27 00:54:30 -04:00
Maxim Cournoyer 8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs.
Icon themes and theme engines are best left for the users to select and
install themselves.

* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
2020-04-27 00:54:30 -04:00
Brice Waegeneire 3b177a6c33
gnu: Add loadable module to wireguard-linux-compat.
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-26 18:24:28 -04:00
Ludovic Courtès 0e5c2d5e14
services: system: Initial entries are non-monadic.
* gnu/system.scm (operating-system-directory-base-entries): Return a
regular, non-monadic value.
* gnu/services.scm (system-derivation): Adjust accordingly.
* gnu/system/linux-container.scm (container-essential-services): Likewise.
2020-04-26 22:49:49 +02:00
Ludovic Courtès 45bd91334f
services: profile: Use a declarative profile.
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of
'profile-derivation'.
2020-04-26 22:49:48 +02:00
Ludovic Courtès cda751105e
system: 'operating-system-directory-base-entries' uses 'profile'.
* gnu/system.scm (operating-system-directory-base-entries): Use a
declarative profile instead of 'profile-derivation'.
2020-04-26 22:49:48 +02:00
Roel Janssen 1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description.
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
2020-04-26 21:47:19 +02:00
Roel Janssen 63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
2020-04-26 21:34:49 +02:00
Maxim Cournoyer b58a22e5b7
gnu: Add hackneyed-x11-cursors.
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
2020-04-26 15:32:10 -04:00
Roel Janssen 886125d791
gnu: Add r-motifbreakr.
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
2020-04-26 21:24:03 +02:00
Roel Janssen 3699bcf54a
gnu: Add r-motifdb.
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
2020-04-26 21:07:45 +02:00
Roel Janssen ec20858a6a
gnu: Add r-pasilla.
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
2020-04-26 21:02:00 +02:00
Christopher Baines f476238431
gnu: guile3.0-chickadee: Rename to guile3.0-chickadee.
This avoids having to packages, both called guile-chickadee.

* gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from
guile-chickadee to guile3.0-chickadee.
2020-04-26 19:44:33 +01:00
Christopher Baines 53aa66c3df
reconfigure: Don't call build-derivations for upgrade-services test
This commit adjusts the upgrade-services system test to not build anything
when computing the derivation for the system test.  I came across this when
looking at issues computing the system test derivations to store in the Guix
Data Service.

* gnu/tests/reconfigure.scm (run-upgrade-services-test): Remove the use of,
and definition for ensure-service-file.
2020-04-26 19:41:56 +01:00
Lars-Dominik Braun 910bf1f7a1
gnu: Add tarsplitter.
* gnu/packages/compression.scm (tarsplitter): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-26 21:07:43 +03:00