f2e90d6f43
gnu: hisat: Build with GCC 10.
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* gnu/packages/bioinformatics.scm (hisat)[native-inputs]: Add gcc-10.
2023-04-25 19:30:43 +02:00
0a4fa99b39
gnu: kallisto: Update to 0.48.0.
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* gnu/packages/bioinformatics.scm (kallisto): Update to 0.48.0.
[arguments]: Remove trailing #T from build phase.
2023-04-25 19:28:42 +02:00
7ae5325bf1
gnu: bpp-core: Build with GCC 10.
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* gnu/packages/bioinformatics.scm (bpp-core)[native-inputs]: Add gcc-10.
2023-04-25 19:12:57 +02:00
2c09cc19e6
gnu: vcflib: Update to 1.0.9.
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* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.9.
[source]: Update snippet.
[inputs]: Add curl, pybind11, and wfa2-lib.
[arguments]: Adjust and reformat.
2023-04-25 19:10:19 +02:00
4ad51f5914
gnu: tabixpp: Update to 1.1.2.
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* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.2.
[source]: Simplify snippet.
[inputs]: Add curl.
[arguments]: Simplify and reformat.
2023-04-25 19:10:19 +02:00
8664c6230e
gnu: Add wfa2-lib.
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* gnu/packages/bioinformatics.scm (wfa2-lib): New variable.
2023-04-25 19:10:18 +02:00
8c5ba69d6e
gnu: biber: Fix build with new Perl.
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* gnu/packages/patches/biber-adapt-perl-5.36.patch: Backport patch from
upstream's 760e6e4ec08a3097f7e6136331541a7b8c1c9df7.
* gnu/packages/tex.scm (biber): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-25 18:42:22 +02:00
74038cf66e
gnu: gcc: Do not build gcov on MinGW.
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* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Disable gcov when
targetting mingw.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:20:19 +02:00
7f0fbd0463
gnu: nerd-dictation: Add package variants.
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* gnu/packages/machine-learning.scm (nerd-dictation)[inputs]: Remove.
(nerd-dictation-gexp): New procedure.
(nerd-dictation/xdotool, nerd-dictation/sox-xdotool)
(nerd-dictation/sox-ydotool, nerd-dictation/sox-wtype): New variables
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:19:21 +02:00
9be1ee6a49
services: tor: Deprecate 'tor-hidden-service' procedure.
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Due to (now renamed) 'hidden-service' record type not being exported, the only
way Onion services (formely hidden services) could have worked is through the
now deprecated 'tor-hidden-service' procedure.
This commit updates the Tor service documentation, corrects some inconsistently
named accessors in <tor-configuration> record-type, renames and refactors
tor-hidden-service-configuration to tor-onion-service-configuration using
define-configuration and also exports it, allowing Onion services to be
configured directly within a <tor-configuration> record.
Lastly, it also deprecates the 'tor-hidden-service' procedure.
* doc/guix.texi (Networking Services): Substitute mentions of “Hidden services”
with “Onion Services”. Add a Tor Onion service configuration example.
Document <tor-onion-service-configuration>. Remove mention of
'tor-hidden-service' procedure.
* gnu/services/networking.scm: Export tor-configuration-tor,
tor-configuration-config-file, tor-configuration-hidden-services,
tor-configuration-socks-socket-type, tor-configuration-control-socket-path,
tor-onion-service-configuration, tor-onion-service-configuration?,
tor-onion-service-configuration-name, tor-onion-service-configuration-mapping.
(<tor-configuration>)[control-socket?]: Rename accessor.
(<hidden-service>): Replace with …
(<tor-onion-service-configuration>): … this.
(tor-configuration->torrc): Update record-type name.
(tor-activation): Ditto.
(tor-hidden-service-type): Remove variable.
(tor-hidden-service): Deprecate procedure.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25 17:19:21 +02:00
c354a345b9
gnu: ghc-8.10: Avoid testsuite timeouts on i686.
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* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Add new phase
'skip-failing-tests-i686-cuirass.
2023-04-25 16:54:57 +02:00
3a37e3ecd8
gnu: lofreq: Set file timestamps to 1980s.
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This keeps Python from complaining: "ZIP does not support timestamps before
1980".
* gnu/packages/bioinformatics.scm (lofreq)[arguments]: Add build phase
'set-source-file-times-to-1980.
2023-04-25 16:17:49 +02:00
0ad4a4d155
gnu: lofreq: Drop input labels.
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* gnu/packages/bioinformatics.scm (lofreq)[inputs]: Drop package labels.
2023-04-25 16:17:49 +02:00
1fca85cd88
gnu: ivar: Update to 1.4.2.
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* gnu/packages/bioinformatics.scm (ivar): Update to 1.4.2.
[arguments]: Remove -Werror flag.
2023-04-25 16:17:49 +02:00
f69f346289
gnu: propeller-gcc-4: Use MODIFY-INPUTS.
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* gnu/packages/embedded.scm (propeller-gcc-4)[native-inputs]: Use
MODIFY-INPUTS and drop package label.
2023-04-25 16:17:49 +02:00
b9162199b3
gnu: propeller-gcc-4: Use G-expression.
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* gnu/packages/embedded.scm (propeller-gcc-4)[arguments]: Use G-expression
because the parent GCC package uses them too.
2023-04-25 16:17:49 +02:00
b380fbca88
gnu: trurl: Correct inputs.
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* gnu/packages/curl.scm (trurl): Replace non-existant input curl-7.84.0 by
curl, which is version 7.85.0.
2023-04-25 15:21:05 +02:00
c919bfefd9
Merge remote-tracking branch 'origin/master' into core-updates
2023-04-25 15:19:29 +02:00
472706ae2f
gnu: python-asyncssh: Update to 2.13.1.
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Includes fix for python-cryptography>=39 disallowing SHA-1 signatures,
which caused the testsuite to fail.
* gnu/packages/ssh.scm (python-asyncssh): Update to 2.13.1.
2023-04-25 14:27:14 +02:00
0daa747de2
gnu: alacritty: Patch reference to xdg-open.
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* gnu/packages/terminals.scm (alacritty)[arguments]: Add a phase to add
an absolute reference to xdg-open.
[inputs]: Add xdg-utils.
2023-04-25 14:06:14 +03:00
95787ffaa2
gnu: emacs-eshell-syntax-highlighting: Update to 0.5.
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* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): Update to 0.5.
2023-04-25 11:47:52 +02:00
c9c4fea7c5
gnu: nethack: Update to 3.6.7.
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* gnu/packages/games.scm (nethack): Update to 3.6.7.
2023-04-25 11:47:51 +02:00
11f078a1fb
gnu: Add trurl.
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* gnu/packages/curl.scm (trurl): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 11:47:51 +02:00
26cdc7be84
gnu: emacs-auctex: Update to 13.2.0.
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* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.0.
2023-04-25 11:47:51 +02:00
af3daff5ea
gnu: Add emacs-xonsh-mode.
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* gnu/packages/emacs-xyz.scm (emacs-xonsh-mode): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 11:47:51 +02:00
ce0bdceb49
gnu: python-importlib-resources: Update to 5.12.0.
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* gnu/packages/python-xyz.scm (python-importlib-resources): Update to 5.12.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase to avoid "pip install".
[native-inputs]: Remove python-toml; add python-flake8, python-pytest,
python-pytest-black, python-pytest-checkdocs, python-pytest-cov,
python-pytest-enabler, python-pytest-flake8, python-pytest-mypy, and
python-setuptools-57.
[propagated-inputs]: Add python-zipp.
2023-04-25 11:32:10 +02:00
8a5b6d5382
gnu: guix-build-coordinator: Update to 0-79.6a4e827.
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* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-79.6a4e827.
2023-04-25 10:25:55 +01:00
a50f0dc5ca
gnu: schismtracker: Update to 20221201.
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* gnu/packages/music.scm (schismtracker): Update to 20221201.
[source]: Convert snippet to gexp.
[arguments]: Convert to gexp, add configure flags for FLAC and Wayland
support.
[inputs]: Remove libx11, libxext, and sdl; add flac and sdl2.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-04-25 10:25:55 +01:00
54771a5b6a
gnu: python-anyio: Upgrade to 3.6.2.
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* gnu/packages/python-xyz.scm (python-anyio): Upgrade to 3.6.2.
2023-04-25 11:08:32 +02:00
e619750d00
Revert "gnu: python-pytest-trio: Update to 0.8.0."
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Not compatible with python-trio 0.8.
This reverts commit 27a4bfbd07
2023-04-25 11:08:30 +02:00
27e1451891
gnu: python-trio: Downgrade to 0.21.
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Version 0.22 deprecates MultiError, which trips up testsuites of
dependents. python-anyio for instance is explicitly not compatible with >=
0.22, so stick to an older release.
* gnu/packages/python-xyz.scm (python-trio): Downgrade to 0.21.
[arguments]: Disable failing test.
2023-04-25 11:08:29 +02:00
ffb7ea6b63
gnu: sbcl-serapeum: Update to 20230423.
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* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230423.
2023-04-25 10:44:16 +02:00
2ebe270927
gnu: sbcl-njson: Update to 1.0.0.
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* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.0.0.
2023-04-25 10:37:13 +02:00
08c63aac53
gnu: slimevolley: Build with gcc-7.
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* gnu/packages/games.scm (slimevolley)[native-inputs]: Add gcc-7.
2023-04-25 10:32:46 +03:00
8495069bed
gnu: scribus: Fix build with latest poppler.
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* gnu/packages/patches/scribus-1.5.8-poppler-22.03.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.04.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.09.0.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-1.patch,
gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/scribus.scm (scribus)[source]: Add patches.
[arguments]: Enable WANT_CPP17 option.
2023-04-25 06:17:16 +02:00
7fc2c442c8
gnu: gnucash: Update help installation prefix.
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The help installation prefix was changed upstream to match the XDG 'help-spec'
specification (see:
https://www.freedesktop.org/wiki/Specifications/help-spec/ ).
* gnu/packages/gnucash.scm (gnucash) [arguments]: Adjust install-docs phase.
2023-04-24 23:35:47 -04:00
971f00f237
gnu: python-tlsh: Fix build.
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* gnu/packages/python-xyz.scm (python-tlsh) [build-system]: Switch to
python-build-system.
[arguments]: Remove #:out-of-source. Remove install phase override. Add a
configure, chdir and adjust the check phase override.
[inputs]: Delete field.
[native-inputs]: New field.
2023-04-24 21:31:56 -04:00
c9f82d57eb
gnu: sicp: Fix build.
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* gnu/packages/scheme.scm (sicp) [build-system]: Use copy-build-system.
[native-inputs]: Remove source input.
[arguments]: Remove #:modules and #:builder arguments. Add #:install-plan and
#:phases arguments. Patch out obsolete call.
2023-04-24 20:58:37 -04:00
941adac603
gnu: python-pdbpp: Update to 0.10.3-0.e1c2e34.
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* gnu/packages/python-xyz.scm (python-pdbpp): Update to 0.10.3-0.e1c2e34.
[arguments]: Add pretend-version phase.
2023-04-24 20:19:23 -04:00
381da6260f
gnu: docker-compose: Use python-jsonschema-3 to fix build.
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* gnu/packages/docker.scm (docker-compose) [inputs]: Replace python-jsonschema
with python-jsonschema-3.
2023-04-24 20:02:26 -04:00
6378c9bb68
gnu: Add python-jsonschema-3.
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* gnu/packages/python-xyz.scm (python-jsonschema-3): New variable.
2023-04-24 20:01:02 -04:00
960647f016
gnu: emacs-password-store: Update to 2.3.0.
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* gnu/packages/emacs-xyz.scm (emacs-password-store): Update to 2.3.0.
[propagated-inputs]: Remove emacs-auth-source-pass.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 01:17:24 +02:00
7decb4c394
gnu: Add deal.
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* gnu/packages/games.scm (deal): New variable.
2023-04-25 01:13:37 +02:00
2ad1a3731f
gnu: lagrange: Update to 1.15.8.
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* gnu/packages/web-browsers.scm (lagrange): Update to 1.15.8.
2023-04-25 01:13:37 +02:00
1d3bba01ea
gnu: fet: Update to 6.9.0.
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* gnu/packages/education.scm (fet): Update to 6.9.0.
2023-04-25 01:13:37 +02:00
83167bc131
gnu: giac: Update to 1.9.0-45.
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* gnu/packages/algebra.scm (giac): Update to 1.9.0-45.
2023-04-25 01:13:36 +02:00
e1c1090a0a
gnu: purescript: Update to 0.15.8.
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* gnu/packages/purescript.scm (purescript): Update to 0.15.8.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 01:13:36 +02:00
621dad1a37
gnu: audacious: Update to 4.3.
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* gnu/packages/music.scm (audacious): Update to 4.3.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 01:13:36 +02:00
14970395cc
gnu: Add python-gtts.
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* gnu/packages/python-xyz.scm (python-gtts): New variable.
Co-authored-by: jgart <jgart@dismail.de>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 01:13:35 +02:00
69e9349adc
gnu: recoll: Update to 1.34.0.
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* gnu/packages/search.scm (recoll): Update to 1.34.0.
[arguments]: Add --enable-recollq configure flag.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25 01:13:35 +02:00
Ricardo Wurmus
Josselin Poiret
Vivien Kraus
Nicolas Graves
Bruno Victal
Lars-Dominik Braun
Andreas Enge
Lars-Dominik Braun
Efraim Flashner
Nicolas Goaziou
Sharlatan Hellseher
Joseph LaFreniere
Christopher Baines
Antero Mejr
Pierre Neidhardt
Maxim Cournoyer
Mekeor Melire
jgart
Yovan Naumovski
Dominik Delgado Steuter
kiasoc5