04e2461e26
gnu: r-universalmotif: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.2.
2022-01-06 07:49:41 +01:00
7ab194b88c
gnu: r-cytolib: Update to 2.6.1.
...
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.1.
2022-01-06 07:49:41 +01:00
489edb479d
gnu: r-clusterprofiler: Update to 4.2.1.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.1.
2022-01-06 07:49:41 +01:00
365f04e026
gnu: r-icobra: Update to 1.22.2.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.2.
2022-01-06 07:49:41 +01:00
0be8a3e525
gnu: r-destiny: Update to 3.8.0.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.0.
2022-01-06 07:49:41 +01:00
7227f93703
gnu: r-diffbind: Update to 3.4.3.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.3.
2022-01-06 07:49:41 +01:00
b8dddafa7c
gnu: r-systempiper: Update to 2.0.5.
...
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.5.
2022-01-06 07:49:41 +01:00
013cda4abb
gnu: r-structuralvariantannotation: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.1.
2022-01-06 07:49:41 +01:00
f9288cdf7c
gnu: r-genomicfeatures: Update to 1.46.3.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.3.
2022-01-06 07:49:41 +01:00
4fc0a88a91
gnu: r-chipseeker: Update to 1.30.3.
...
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.3.
2022-01-06 07:49:41 +01:00
9bf3a18fb6
gnu: r-biocparallel: Update to 1.28.3.
...
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.3.
2022-01-06 07:49:40 +01:00
ae00bf2d5e
gnu: r-yapsa: Update to 1.20.1.
...
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.20.1.
[propagated-inputs]: Remove r-pmcmr; add r-pmcmrplus.
2022-01-06 07:49:37 +01:00
85f006c8e8
services: Document the full list of available NTP URLs.
...
* gnu/services/networking.scm (%ntp-servers): List the URLs granted to us.
2022-01-06 01:30:27 -05:00
457416bb1b
gnu: godot: Remove input labels.
...
* gnu/packages/game-development.scm (godot)[inputs]: Remove input labels.
[arguments]: Tweak accordingly.
2022-01-06 06:21:31 +01:00
8f90ff4cb8
gnu: godot: Update to 3.4.2.
...
* gnu/packages/game-development.scm (godot): Update to 3.4.2.
[arguments]: Don't explicitly return #t from phases.
2022-01-06 06:21:31 +01:00
aebfc1425d
gnu: linux-libre 4.4: Update to 4.4.298.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.298.
(linux-libre-4.4-pristine-source): Update hash.
2022-01-05 23:39:15 -05:00
5f12ef9276
gnu: linux-libre 4.9: Update to 4.9.296.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.296.
(linux-libre-4.9-pristine-source): Update hash.
2022-01-05 23:39:15 -05:00
d603ef332e
gnu: linux-libre 4.14: Update to 4.14.261.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.261.
(linux-libre-4.14-pristine-source): Update hash.
2022-01-05 23:39:15 -05:00
66ea2b6a64
gnu: linux-libre 4.19: Update to 4.19.224.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.224.
(linux-libre-4.19-pristine-source): Update hash.
2022-01-05 23:39:15 -05:00
38b9a0388d
gnu: linux-libre 5.4: Update to 5.4.170.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.170.
(linux-libre-5.4-pristine-source): Update hash.
2022-01-05 23:39:14 -05:00
973403e613
gnu: linux-libre 5.10: Update to 5.10.90.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.90.
(linux-libre-5.10-pristine-source): Update hash.
2022-01-05 23:39:14 -05:00
55fd53b0db
gnu: linux-libre: Update to 5.15.13.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.13.
(linux-libre-5.15-pristine-source): Update hash.
2022-01-05 23:39:08 -05:00
b18fb4bf77
gnu: snapraid: Update to 12.0.
...
* gnu/packages/backup.scm (snapraid): Update to 12.0.
2022-01-06 05:24:18 +01:00
70a229aafe
gnu: snapraid: ‘Fix’ build.
...
* gnu/packages/backup.scm (snapraid)[arguments]:
Remove "--enable-valgrind" from #:configure-flags.
[native-inputs]: Remove valgrind.
2022-01-06 05:24:18 +01:00
e3c9860ab9
gnu: snapraid: Use G-expressions.
...
* gnu/packages/backup.scm (snapraid)[arguments]:
Rewrite as G-expressions.
2022-01-06 05:24:18 +01:00
4f488fb545
gnu: wimlib: Update to 1.13.5.
...
* gnu/packages/backup.scm (wimlib): Update to 1.13.5.
2022-01-06 05:24:17 +01:00
38ee3d616d
gnu: borgmatic: Use G-expressions.
...
* gnu/packages/backup.scm (borgmatic)[arguments]:
Rewrite as G-expressions.
2022-01-06 05:24:17 +01:00
2c9bc8408e
gnu: borgmatic: Update to 1.5.22.
...
* gnu/packages/backup.scm (borgmatic): Update to 1.5.22.
2022-01-06 05:24:17 +01:00
1326b36073
gnu: pan: Use G-expressions.
...
* gnu/packages/mail.scm (pan)[arguments]:
Rewrite as G-expressions.
2022-01-06 05:24:17 +01:00
0d78ac083a
gnu: pan: Update to 0.149.
...
* gnu/packages/mail.scm (pan): Update to 0.149.
[arguments]: Don't explicitly return #t from phases.
[inputs]: Upgrade gmime-2.6 to gmime.
2022-01-06 05:24:17 +01:00
f9fe99b4cd
gnu: xxhash: Use G-expressions.
...
* gnu/packages/digest.scm (xxhash)[arguments]:
Rewrite as G-expressions.
2022-01-06 05:24:17 +01:00
7608d2d05d
gnu: xxhash: Update to 0.8.1.
...
* gnu/packages/digest.scm (xxhash): Update to 0.8.1.
[arguments]: Add a new 'fix-man-page-links phase.
2022-01-06 05:24:17 +01:00
24b04f5d4e
gnu: toybox: Use G-expressions.
...
* gnu/packages/busybox.scm (toybox)[arguments]:
Rewrite as G-expressions.
2022-01-06 05:24:17 +01:00
7a96516f60
gnu: toybox: Update to 0.8.6.
...
* gnu/packages/busybox.scm (toybox): Update to 0.8.6.
2022-01-06 05:24:16 +01:00
e2a1419799
gnu: vice: Update to 3.6.
...
* gnu/packages/emulators.scm (vice): Update to 3.6.
[arguments]: Add "--disable-html-docs" to #:configure-flags.
2022-01-06 05:24:16 +01:00
a2ea9ea300
gnu: xchm: Update to 1.33.
...
* gnu/packages/ebook.scm (xchm): Update to 1.33.
2022-01-06 05:24:16 +01:00
0791b10909
gnu: knot-resolver: Update to 5.4.4.
...
* gnu/packages/dns.scm (knot-resolver): Update to 5.4.4.
2022-01-06 05:24:16 +01:00
c233b7b422
gnu: cqfd: Update to 5.3.0.
...
* gnu/packages/docker.scm (cqfd): Update to 5.3.0.
2022-01-05 23:02:25 -05:00
c468db2e56
gnu: python-urwidtrees: Build with python-mock.
...
This fixes a build failure in the 'sanity-check' phase.
* gnu/packages/python-xyz.scm (python-urwidtrees)[native-inputs]: Add
python-mock.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-05 18:10:47 -05:00
9765768950
gnu: go-github-com-hashicorp-hcl: Update to 1.0.0.
...
* gnu/packages/golang:
Use the latest tag for HCL V1 instead of commit
[native-inputs]: add go-github-com-davecgh-go-spew
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:20 +01:00
bd43300c65
gnu: minetest-unified-inventory: Update to 2021-12-26.
...
* gnu/packages/minetest.scm (minetest-unified-inventory): Update to 2021-12-26.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:20 +01:00
e2ba986b98
gnu: minetest-technic: Update to 2021-09-11.
...
* gnu/packages/minetest.scm (minetest-technic): Update to 2021-09-11.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:19 +01:00
96ba33a869
gnu: minetest-mobs-animal: Update to 2021-11-14.
...
* gnu/packages/minetest.scm (minetest-mobs-animal): Update to 2021-11-14.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:19 +01:00
0c468d5b7f
gnu: minetest-mobs: Update to 2021-12-12.
...
* gnu/packages/minetest.scm (minetest-mobs): Update to 2021-12-12.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:19 +01:00
9d88c4a2a6
gnu: minetest-homedecor-modpack: Update to 2021-12-26.
...
* gnu/packages/minetest.scm (minetest-homedecor-modpack): Update to 2021-12-26.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:19 +01:00
34bc83486d
gnu: minetest-basic-materials: Update to 2021-12-26.
...
* gnu/packages/minetest.scm (minetest-basic-materials): Update to 2021-12-26.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:19 +01:00
3c86268004
gnu: guile-udev: Update to 0.2.3
...
* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:19 +01:00
282197b521
gnu: tootle: Remove trailing #t in phases.
...
* gnu/packages/mastodon.scm (tootle)[arguments]: Remove trailing #t.
2022-01-05 23:44:18 +01:00
f2d304ac98
gnu: tootle: Simplify inputs.
...
* gnu/packages/mastodon.scm (tootle)[native-inputs]: Simplify.
2022-01-05 23:44:18 +01:00
b0d25a7118
gnu: tootle: Fix build.
...
* gnu/packages/patches/tootle-glib-object-naming.patch,
gnu/packages/patches/tootle-reason-phrase.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/mastodon.scm (tootle)[source]: Use them.
[inputs]: Use LIBSOUP-MINIMAL-2 instead of LIBSOUP.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:18 +01:00
bfdeba11f8
linux-container: Handle CLONE_NEWCGROUP and use it by default.
...
Adds low-level support for launching Linux containers with cgroup namespaces.
* gnu/build/linux-container.scm (%namespaces): Add 'cgroup.
(namespaces->bit-mask): Handle it.
* guix/build/syscalls.scm (CLONE_NEWCGROUP): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:18 +01:00
2c1807c516
gnu: haveged: Update to 1.9.16.
...
* gnu/packages/linux.scm (haveged): Update to 1.9.16.
2022-01-05 23:33:56 +01:00
f16b6fd970
gnu: mdadm: Use G-expressions.
...
* gnu/packages/linux.scm (mdadm)[arguments]:
Rewrite as G-expressions.
[inputs]: Move under arguments. Remove input labels.
2022-01-05 23:33:56 +01:00
3d7a1b84c5
gnu: mdadm: Update to 4.2.
...
* gnu/packages/linux.scm (mdadm): Update to 4.2.
[arguments]: Don't explicitly return #t from phases.
2022-01-05 23:33:56 +01:00
3aa3aea2b0
gnu: Add r-pmcmrplus.
...
* gnu/packages/cran.scm (r-pmcmrplus): New variable.
2022-01-05 23:09:42 +01:00
19e0b39361
gnu: Add r-multcompview.
...
* gnu/packages/cran.scm (r-multcompview): New variable.
2022-01-05 23:09:41 +01:00
8908b234a8
gnu: Add r-bwstest.
...
* gnu/packages/cran.scm (r-bwstest): New variable.
2022-01-05 23:09:41 +01:00
e1c1299054
gnu: zfs: Update to 2.1.2.
...
* gnu/packages/file-systems.scm (zfs): Update to 2.1.2.
2022-01-05 22:24:50 +01:00
f8633a7395
gnu: Add guile-kolam.
...
* gnu/packages/guile-xyz.scm (guile-kolam): New variable.
2022-01-05 22:12:58 +01:00
c37559e819
gnu: syncthing-gtk: Make the autostart mechanism invoke the correct executable.
...
Fixes <https://issues.guix.gnu.org/50789 >.
* gnu/packages/syncthing.scm (syncthing-gtk)[arguments]: Add a
'fix-autostart-path' phase.
2022-01-05 16:10:47 -05:00
f5da992b16
gnu: emacs-org-roam-bibtex: Update to 0.6.2.
...
* gnu/packages/emacs-xyz.scm (emacs-org-roam-bibtex): Update to 0.6.2.
2022-01-05 22:07:24 +01:00
707acc4cfb
gnu: supertux: Update to 0.6.3.
...
* gnu/packages/games.scm (supertux): Update to 0.6.3.
[inputs] Sort list and add glm.
* gnu/packages/patches/supertux-unbundle-squirrel.patch: Adjust patch to
apply with upstream changes.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-05 15:50:59 -05:00
0fea9aec59
doc: Only use GDM and GNOME on x86_64.
...
* gnu/system/examples/desktop.tmpl: Only use gnome-desktop-service-type and
the default login manager in set-xorg-configuration when the target system is
x86_64.
2022-01-05 21:46:41 +01:00
f831bb75f1
gnu: r-credentials: Use new input style.
...
* gnu/packages/cran.scm (r-credentials)[inputs]: Use new input style.
2022-01-05 21:41:12 +01:00
8138142799
gnu: r-credentials: Remove trailing #T.
...
* gnu/packages/cran.scm (r-credentials)[arguments]: Remove trailing #T from
build phase.
2022-01-05 21:40:51 +01:00
16ed462ab1
gnu: r-curl: Use new input style.
...
* gnu/packages/cran.scm (r-curl)[inputs]: Use new input style.
2022-01-05 21:40:19 +01:00
62dc81a958
gnu: r-v8: Use new input style.
...
* gnu/packages/cran.scm (r-v8)[arguments]: Use standard name as label.
[inputs]: Use new style.
2022-01-05 21:36:29 +01:00
36d2a03edc
gnu: r-desctools: Update to 0.99.44.
...
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.44.
2022-01-05 21:18:13 +01:00
55429348f1
gnu: r-exact: Update to 3.1.
...
* gnu/packages/statistics.scm (r-exact): Update to 3.1.
2022-01-05 21:18:13 +01:00
33710d4e39
gnu: r-gld: Update to 2.6.4.
...
* gnu/packages/statistics.scm (r-gld): Update to 2.6.4.
2022-01-05 21:18:13 +01:00
c6e46ce44b
gnu: r-bayesfactor: Update to 0.9.12-4.3.
...
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.3.
2022-01-05 21:18:13 +01:00
afe3f9f51d
gnu: r-cairo: Update to 1.5-14.
...
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-14.
2022-01-05 21:18:13 +01:00
fe816ea9f5
gnu: r-sn: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-sn): Update to 2.0.1.
2022-01-05 21:18:13 +01:00
e77c46f654
gnu: r-deoptimr: Update to 1.0-10.
...
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-10.
2022-01-05 21:18:13 +01:00
266562da22
gnu: r-mclust: Update to 5.4.9.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.9.
2022-01-05 21:18:13 +01:00
0858d957ba
gnu: r-irlba: Update to 2.3.5.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.5.
2022-01-05 21:18:13 +01:00
db2d774fd3
gnu: r-rsqlite: Update to 2.2.9.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.9.
2022-01-05 21:18:12 +01:00
8f1288c2f7
gnu: r-rcpparmadillo: Update to 0.10.7.5.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.7.5.0.
2022-01-05 21:18:12 +01:00
ff2e3350fa
gnu: r-readr: Update to 2.1.1.
...
* gnu/packages/statistics.scm (r-readr): Update to 2.1.1.
2022-01-05 21:18:12 +01:00
57392d40bf
gnu: r-withr: Update to 2.4.3.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.4.3.
2022-01-05 21:18:12 +01:00
861ae819e3
gnu: r-devtools: Update to 2.4.3.
...
* gnu/packages/statistics.scm (r-devtools): Update to 2.4.3.
2022-01-05 21:18:12 +01:00
a68ac65910
gnu: r-backports: Update to 1.4.1.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.4.1.
2022-01-05 21:18:12 +01:00
d35ac14572
gnu: r-xml2: Update to 1.3.3.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.3.
2022-01-05 21:18:12 +01:00
ffbd40eee6
gnu: r-testthat: Update to 3.1.1.
...
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.1.
2022-01-05 21:18:12 +01:00
8593846517
gnu: r-memoise: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-memoise): Update to 2.0.1.
2022-01-05 21:18:12 +01:00
b4a2db20ba
gnu: r-knitr: Update to 1.37.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.37.
2022-01-05 21:18:12 +01:00
26d47e68fa
gnu: r-bh: Update to 1.78.0-0.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.78.0-0.
2022-01-05 21:18:11 +01:00
ccd7d9f8c2
gnu: r-dbi: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.2.
2022-01-05 21:18:11 +01:00
a6a02a955e
gnu: r-stringi: Update to 1.7.6.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.6.
2022-01-05 21:18:11 +01:00
4a7afefa85
gnu: r-digest: Update to 0.6.29.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.29.
2022-01-05 21:18:11 +01:00
b77de3ca6f
gnu: r-matrix: Update to 1.4-0.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.4-0.
2022-01-05 21:18:11 +01:00
593667a8c0
gnu: r-ggh4x: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.1.
2022-01-05 21:18:11 +01:00
8f9b7ee002
gnu: r-paws-common: Update to 0.3.15.
...
* gnu/packages/cran.scm (r-paws-common): Update to 0.3.15.
2022-01-05 21:18:11 +01:00
1b48f85034
gnu: r-rgeos: Update to 0.5-9.
...
* gnu/packages/cran.scm (r-rgeos): Update to 0.5-9.
2022-01-05 21:18:11 +01:00
62c7050cef
gnu: r-qs: Update to 0.25.2.
...
* gnu/packages/cran.scm (r-qs): Update to 0.25.2.
2022-01-05 21:18:10 +01:00
7534d44e6d
gnu: r-stringfish: Update to 0.15.5.
...
* gnu/packages/cran.scm (r-stringfish): Update to 0.15.5.
2022-01-05 21:18:10 +01:00
eca189bf5b
gnu: r-exactextractr: Update to 0.7.2.
...
* gnu/packages/cran.scm (r-exactextractr): Update to 0.7.2.
2022-01-05 21:18:10 +01:00
11282df15e
gnu: r-opencpu: Update to 2.2.6.
...
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.6.
2022-01-05 21:18:10 +01:00
540a0763fc
gnu: r-vroom: Update to 1.5.7.
...
* gnu/packages/cran.scm (r-vroom): Update to 1.5.7.
2022-01-05 21:18:10 +01:00
086fb6d56d
gnu: r-stars: Update to 0.5-5.
...
* gnu/packages/cran.scm (r-stars): Update to 0.5-5.
2022-01-05 21:18:10 +01:00
e4c498ff6d
gnu: r-pkgdown: Update to 2.0.1.
...
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.1.
[propagated-inputs]: Add bslib and r-jsonlite; remove r-openssl and
r-rematch2.
2022-01-05 21:18:10 +01:00
fa7161fcf9
gnu: r-ragg: Update to 1.2.1.
...
* gnu/packages/cran.scm (r-ragg): Update to 1.2.1.
2022-01-05 21:18:10 +01:00
e99491d81d
gnu: r-mlr3pipelines: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-mlr3pipelines): Update to 0.4.0.
2022-01-05 21:18:10 +01:00
ee29912569
gnu: r-calculus: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-calculus): Update to 0.3.2.
2022-01-05 21:18:09 +01:00
d16effe7f9
gnu: r-phangorn: Update to 2.8.1.
...
* gnu/packages/cran.scm (r-phangorn): Update to 2.8.1.
2022-01-05 21:18:09 +01:00
8814b5ae8d
gnu: r-seurat: Update to 4.0.6.
...
* gnu/packages/cran.scm (r-seurat): Update to 4.0.6.
2022-01-05 21:18:09 +01:00
2815f89717
gnu: r-seuratobject: Update to 4.0.4.
...
* gnu/packages/cran.scm (r-seuratobject): Update to 4.0.4.
2022-01-05 21:18:09 +01:00
82dbfd699e
gnu: r-maldiquant: Update to 1.21.
...
* gnu/packages/cran.scm (r-maldiquant): Update to 1.21.
2022-01-05 21:18:09 +01:00
2d2b6d7ea5
gnu: r-conflicted: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-conflicted): Update to 1.1.0.
2022-01-05 21:18:09 +01:00
9b13f04206
gnu: r-yardstick: Update to 0.0.9.
...
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.9.
2022-01-05 21:18:09 +01:00
e25fba029b
gnu: r-igraph: Update to 1.2.10.
...
* gnu/packages/cran.scm (r-igraph): Update to 1.2.10.
2022-01-05 21:18:08 +01:00
8bd5d056f4
gnu: r-rfast: Update to 2.0.4.
...
* gnu/packages/cran.scm (r-rfast): Update to 2.0.4.
2022-01-05 21:18:08 +01:00
9c52d5661a
gnu: r-cpp11: Update to 0.4.2.
...
* gnu/packages/cran.scm (r-cpp11): Update to 0.4.2.
2022-01-05 21:18:08 +01:00
ee8645a09e
gnu: r-spatstat: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spatstat): Update to 2.3-0.
2022-01-05 21:18:08 +01:00
81c7c3548c
gnu: r-spatstat-linnet: Update to 2.3-1.
...
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.3-1.
2022-01-05 21:18:08 +01:00
fa564e5799
gnu: r-spatstat-core: Update to 2.3-2.
...
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.3-2.
2022-01-05 21:18:08 +01:00
d7b9424710
gnu: r-spatstat-geom: Update to 2.3-1.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.3-1.
2022-01-05 21:18:07 +01:00
200e51adfd
gnu: r-spatstat-data: Update to 2.1-2.
...
* gnu/packages/cran.scm (r-spatstat-data): Update to 2.1-2.
2022-01-05 21:18:07 +01:00
deb80f1548
gnu: r-spatstat-sparse: Update to 2.1-0.
...
* gnu/packages/cran.scm (r-spatstat-sparse): Update to 2.1-0.
2022-01-05 21:18:07 +01:00
421318e1de
gnu: r-spatstat-utils: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spatstat-utils): Update to 2.3-0.
2022-01-05 21:18:07 +01:00
46c5659a36
gnu: r-fastshap: Update to 0.0.7.
...
* gnu/packages/cran.scm (r-fastshap): Update to 0.0.7.
2022-01-05 21:18:07 +01:00
64d9529e7c
gnu: r-brms: Update to 2.16.3.
...
* gnu/packages/cran.scm (r-brms): Update to 2.16.3.
[propagated-inputs]: Remove r-projpred.
2022-01-05 21:18:07 +01:00
bcf7f926eb
gnu: r-keyring: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-keyring): Update to 1.3.0.
2022-01-05 21:18:07 +01:00
62a43dad1b
gnu: r-rstan: Update to 2.21.3.
...
* gnu/packages/cran.scm (r-rstan): Update to 2.21.3.
[propagated-inputs]: Remove r-v8 and r-withr.
2022-01-05 21:18:07 +01:00
4b955f9454
gnu: r-polycor: Update to 0.8-0.
...
* gnu/packages/cran.scm (r-polycor): Update to 0.8-0.
2022-01-05 21:18:06 +01:00
9aebde6d38
gnu: r-quanteda: Update to 3.2.0.
...
* gnu/packages/cran.scm (r-quanteda): Update to 3.2.0.
2022-01-05 21:18:06 +01:00
1c12d1f239
gnu: r-proxyc: Update to 0.2.4.
...
* gnu/packages/cran.scm (r-proxyc): Update to 0.2.4.
2022-01-05 21:18:06 +01:00
75d3010c22
gnu: r-anthropometry: Update to 1.17.
...
* gnu/packages/cran.scm (r-anthropometry): Update to 1.17.
2022-01-05 21:18:06 +01:00
64680d3146
gnu: r-reldist: Update to 1.7-0.
...
* gnu/packages/cran.scm (r-reldist): Update to 1.7-0.
[propagated-inputs]: Add r-densestbayes.
2022-01-05 21:18:06 +01:00
267a284a7a
gnu: r-abtest: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-abtest): Update to 1.0.1.
2022-01-05 21:18:06 +01:00
d094209286
gnu: r-qgam: Update to 1.3.4.
...
* gnu/packages/cran.scm (r-qgam): Update to 1.3.4.
2022-01-05 21:18:06 +01:00
ba180e885c
gnu: r-pracma: Update to 2.3.6.
...
* gnu/packages/cran.scm (r-pracma): Update to 2.3.6.
2022-01-05 21:18:06 +01:00
d523463654
gnu: r-rgdal: Update to 1.5-28.
...
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-28.
2022-01-05 21:18:05 +01:00
ef74872125
gnu: r-terra: Update to 1.4-22.
...
* gnu/packages/cran.scm (r-terra): Update to 1.4-22.
2022-01-05 21:18:05 +01:00
b16f0e55a8
gnu: r-graphlayouts: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-graphlayouts): Update to 0.8.0.
2022-01-05 21:18:05 +01:00
8641947eaa
gnu: r-uwot: Update to 0.1.11.
...
* gnu/packages/cran.scm (r-uwot): Update to 0.1.11.
2022-01-05 21:18:05 +01:00
19257cd24e
gnu: r-ggfortify: Update to 0.4.14.
...
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.14.
2022-01-05 21:18:05 +01:00
d7cfb89536
gnu: r-rsparse: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-rsparse): Update to 0.5.0.
[propagated-inputs]: Add r-matrixextra.
2022-01-05 21:18:05 +01:00
84b8ded6a9
gnu: r-rex: Update to 1.2.1.
...
* gnu/packages/cran.scm (r-rex): Update to 1.2.1.
2022-01-05 21:18:05 +01:00
e70c6fcfdf
gnu: r-rjava: Update to 1.0-6.
...
* gnu/packages/cran.scm (r-rjava): Update to 1.0-6.
2022-01-05 21:18:05 +01:00
3ec07eab56
gnu: r-pegas: Update to 1.1.
...
* gnu/packages/cran.scm (r-pegas): Update to 1.1.
[propagated-inputs]: Remove r-adegenet.
2022-01-05 21:18:05 +01:00
1f914b1476
gnu: r-spdep: Update to 1.1-13.
...
* gnu/packages/cran.scm (r-spdep): Update to 1.1-13.
2022-01-05 21:18:04 +01:00
7a6af65660
gnu: r-sf: Update to 1.0-5.
...
* gnu/packages/cran.scm (r-sf): Update to 1.0-5.
2022-01-05 21:18:04 +01:00
fc9f3a1fe3
gnu: r-wk: Update to 0.6.0.
...
* gnu/packages/cran.scm (r-wk): Update to 0.6.0.
[propagated-inputs]: Remove r-cpp11.
2022-01-05 21:18:04 +01:00
7fd640260c
gnu: r-sets: Update to 1.0-20.
...
* gnu/packages/cran.scm (r-sets): Update to 1.0-20.
2022-01-05 21:18:04 +01:00
ba7c9cebaa
gnu: r-irkernel: Update to 1.3.
...
* gnu/packages/cran.scm (r-irkernel): Update to 1.3.
2022-01-05 21:18:04 +01:00
ef3d590b6f
gnu: r-irdisplay: Update to 1.1.
...
* gnu/packages/cran.scm (r-irdisplay): Update to 1.1.
2022-01-05 21:18:04 +01:00
2774af54b7
gnu: r-repr: Update to 1.1.4.
...
* gnu/packages/cran.scm (r-repr): Update to 1.1.4.
2022-01-05 21:18:04 +01:00
df700d0a7c
gnu: r-shinyjs: Update to 2.1.0.
...
* gnu/packages/cran.scm (r-shinyjs): Update to 2.1.0.
[propagated-inputs]: Remove r-htmltools.
2022-01-05 21:18:04 +01:00
583965a89a
gnu: r-parallelly: Update to 1.30.0.
...
* gnu/packages/cran.scm (r-parallelly): Update to 1.30.0.
2022-01-05 21:18:04 +01:00
ea42d7fd71
gnu: r-fmsb: Update to 0.7.2.
...
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.2.
2022-01-05 21:18:03 +01:00
ffced01644
gnu: r-ks: Update to 1.13.3.
...
* gnu/packages/cran.scm (r-ks): Update to 1.13.3.
2022-01-05 21:18:03 +01:00
3693c56b89
gnu: r-ncdf4: Update to 1.19.
...
* gnu/packages/cran.scm (r-ncdf4): Update to 1.19.
2022-01-05 21:18:03 +01:00
1b77ed8968
gnu: r-remotes: Update to 2.4.2.
...
* gnu/packages/cran.scm (r-remotes): Update to 2.4.2.
2022-01-05 21:18:03 +01:00
dceb298991
gnu: r-sessioninfo: Update to 1.2.2.
...
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.2.2.
2022-01-05 21:18:03 +01:00
dc66d59fd4
gnu: r-usethis: Update to 2.1.5.
...
* gnu/packages/cran.scm (r-usethis): Update to 2.1.5.
2022-01-05 21:18:03 +01:00
b83f1507d8
gnu: r-gert: Update to 1.5.0.
...
* gnu/packages/cran.scm (r-gert): Update to 1.5.0.
2022-01-05 21:18:03 +01:00
98dae5afe8
gnu: r-credentials: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-credentials): Update to 1.3.2.
2022-01-05 21:18:03 +01:00
c7f7565a26
gnu: r-fs: Update to 1.5.2.
...
* gnu/packages/cran.scm (r-fs): Update to 1.5.2.
2022-01-05 21:18:03 +01:00
299c6bee4b
gnu: r-sjplot: Update to 2.8.10.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.10.
2022-01-05 21:18:02 +01:00
4947de6cc1
gnu: r-emmeans: Update to 1.7.2.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.2.
2022-01-05 21:18:02 +01:00
e125f8cd95
gnu: r-multcomp: Update to 1.4-18.
...
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-18.
2022-01-05 21:18:02 +01:00
5319f8a582
gnu: r-abundant: Update to 1.2.
...
* gnu/packages/cran.scm (r-abundant): Update to 1.2.
[propagated-inputs]: Remove r-quic; add r-glasso.
2022-01-05 21:18:02 +01:00
de3a354107
gnu: r-raster: Update to 3.5-11.
...
* gnu/packages/cran.scm (r-raster): Update to 3.5-11.
2022-01-05 21:18:02 +01:00
85b2f49cc0
gnu: r-argparse: Update to 2.1.3.
...
* gnu/packages/cran.scm (r-argparse): Update to 2.1.3.
2022-01-05 21:18:02 +01:00
5bdb2f59b8
gnu: r-sjmisc: Update to 2.8.9.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.9.
2022-01-05 21:18:02 +01:00
10dd00af24
gnu: r-rdpack: Update to 2.1.3.
...
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.3.
2022-01-05 21:18:02 +01:00
2fdf20c0f0
gnu: r-rbibutils: Update to 2.2.7.
...
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.7.
2022-01-05 21:18:02 +01:00
7a5fdca2a0
gnu: r-renv: Update to 0.15.0.
...
* gnu/packages/cran.scm (r-renv): Update to 0.15.0.
2022-01-05 21:18:01 +01:00
22e6c2a017
gnu: r-dtplyr: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-dtplyr): Update to 1.2.0.
2022-01-05 21:18:01 +01:00
8f9ab3cfdc
gnu: r-openxlsx: Update to 4.2.5.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.2.5.
2022-01-05 21:18:01 +01:00
61949e5d3a
gnu: r-arules: Update to 1.7-2.
...
* gnu/packages/cran.scm (r-arules): Update to 1.7-2.
2022-01-05 21:18:01 +01:00
42f26beb24
gnu: r-ttr: Update to 0.24.3.
...
* gnu/packages/cran.scm (r-ttr): Update to 0.24.3.
2022-01-05 21:18:01 +01:00
2caa553d19
gnu: r-tinytex: Update to 0.36.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.36.
2022-01-05 21:18:01 +01:00
566ad34e97
gnu: r-xfun: Update to 0.29.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.29.
2022-01-05 21:18:01 +01:00
53004bd0ee
gnu: r-venndiagram: Update to 1.7.1.
...
* gnu/packages/cran.scm (r-venndiagram): Update to 1.7.1.
2022-01-05 21:18:01 +01:00
64953f106d
gnu: r-hardyweinberg: Update to 1.7.4.
...
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.4.
[propagated-inputs]: Add r-nnet.
2022-01-05 21:18:01 +01:00
eafc0d0ecc
gnu: r-mice: Update to 3.14.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.14.0.
[propagated-inputs]: Add r-withr.
2022-01-05 21:18:01 +01:00
2a1582d231
gnu: r-broom: Update to 0.7.11.
...
* gnu/packages/cran.scm (r-broom): Update to 0.7.11.
2022-01-05 21:18:00 +01:00
5248478c10
gnu: r-rmysql: Update to 0.10.23.
...
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.23.
2022-01-05 21:18:00 +01:00
60f0c3b46e
gnu: r-dimred: Update to 0.2.4.
...
* gnu/packages/cran.scm (r-dimred): Update to 0.2.4.
[native-inputs]: Add r-knitr.
2022-01-05 21:18:00 +01:00
5ff9cbf368
gnu: r-progressr: Update to 0.10.0.
...
* gnu/packages/cran.scm (r-progressr): Update to 0.10.0.
2022-01-05 21:18:00 +01:00
23d84dd96c
gnu: r-suppdists: Update to 1.1-9.7.
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* gnu/packages/cran.scm (r-suppdists): Update to 1.1-9.7.
2022-01-05 21:18:00 +01:00
a01709b10e
gnu: r-pkgload: Update to 1.2.4.
...
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.4.
2022-01-05 21:18:00 +01:00
d6a544a0e6
gnu: r-pkgbuild: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.3.1.
2022-01-05 21:18:00 +01:00
64b9ce4b92
gnu: r-glue: Update to 1.6.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.6.0.
2022-01-05 21:18:00 +01:00
8bfc37f725
gnu: r-ape: Update to 5.6.
...
* gnu/packages/cran.scm (r-ape): Update to 5.6.
2022-01-05 21:18:00 +01:00
2f3eac29af
gnu: r-shadowtext: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.0.
2022-01-05 21:18:00 +01:00
138ce13e44
gnu: r-ggpmisc: Update to 0.4.5.
...
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.5.
2022-01-05 21:17:59 +01:00
52a839ac52
gnu: r-ggpp: Update to 0.4.3.
...
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.3.
2022-01-05 21:17:59 +01:00
8e538e080c
gnu: r-v8: Update to 4.0.0.
...
* gnu/packages/cran.scm (r-v8): Update to 4.0.0.
2022-01-05 21:17:59 +01:00
0d1e96cec3
gnu: r-rticles: Update to 0.22.
...
* gnu/packages/cran.scm (r-rticles): Update to 0.22.
2022-01-05 21:17:59 +01:00
0e6fee9bc0
gnu: r-datawizard: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-datawizard): Update to 0.2.2.
2022-01-05 21:17:59 +01:00
9af1a9dd4a
gnu: r-brio: Update to 1.1.3.
...
* gnu/packages/cran.scm (r-brio): Update to 1.1.3.
2022-01-05 21:17:59 +01:00
38e4477a8b
gnu: r-httpuv: Update to 1.6.4.
...
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.4.
* gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: Adjust to version
1.6.4.
2022-01-05 21:17:59 +01:00
3cb1548f91
gnu: Add r-densestbayes.
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* gnu/packages/cran.scm (r-densestbayes): New variable.
2022-01-05 21:17:59 +01:00
9a89cee1b1
gnu: Add r-matrixextra.
...
* gnu/packages/cran.scm (r-matrixextra): New variable.
2022-01-05 21:17:58 +01:00
231e33d636
gnu: r-activedriverwgs: Update to 1.0.3.
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* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3.
2022-01-05 21:17:58 +01:00
b615af830b
gnu: r-activedriverwgs: Update to 1.1.2.
...
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2.
[propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38,
r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10.
2022-01-05 21:17:58 +01:00
734e1b185f
gnu: r-valr: Update to 0.6.4.
...
* gnu/packages/cran.scm (r-valr): Move from here...
* gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4.
[propagated-inputs]: Add r-rtracklayer.
2022-01-05 21:17:58 +01:00
d4e0534c4f
gnu: r-openssl: Use openssl instead of libressl.
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* gnu/packages/statistics.scm (r-openssl)[arguments]: Add phase to disable
versioned linking.
[inputs]: Replace libressl with openssl.
2022-01-05 21:17:58 +01:00
2d666bd6c0
gnu: r-openssl: Update to 1.4.6.
...
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.6.
2022-01-05 21:17:58 +01:00
6a54715988
gnu: musescore: Use new package style.
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* gnu/packages/music.scm (musescore)[source]<snippet>: Remove trailing #T.
[inputs]: Remove labels.
2022-01-05 14:32:12 +01:00
7e651ab3e6
gnu: emacs-helm-cider: Update to 0.5.0.
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* gnu/packages/emacs-xyz.scm (emacs-helm-cider): Update to 0.5.0.
2022-01-05 12:11:30 +01:00
16a645b7a9
gnu: emacs-emms: Update to 8.
...
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 8.
2022-01-05 12:08:07 +01:00
9577a9bad9
gnu: python-django@2.2: Update hash.
...
PyPI is serving a different tarball from the official home page, where this
packager had downloaded it: <https://code.djangoproject.com/ticket/33411 >.
This is a follow-up to commit ad35d8c017
2022-01-05 11:43:20 +01:00
ad35d8c017
gnu: python-django@2.2: Update to 2.2.26 [security fixes].
...
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.26.
2022-01-05 11:20:00 +01:00
e19b9ad5a2
gnu: python-django@3.2: Update to 3.2.11 [security fixes].
...
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.
* gnu/packages/django.scm (python-django-3.2): Update to 3.2.11.
2022-01-05 11:20:00 +01:00
07b505aa3b
gnu: python-django: Update to 4.0.1 [security fixes].
...
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.
* gnu/packages/django.scm (python-django-4.0): Update to 4.0.1.
2022-01-05 11:20:00 +01:00
1b6973cc58
gnu: uBlock Origin: Update to 1.40.4.
...
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.40.4.
2022-01-05 11:20:00 +01:00
56b29a61e8
gnu: nmrpflash: Update to 0.9.16.
...
* gnu/packages/admin.scm (nmrpflash): Update to 0.9.16.
2022-01-05 11:20:00 +01:00
8860e9db56
gnu: lucene++: Use G-expressions.
...
* gnu/packages/rdf.scm (lucene++)[arguments]:
Rewrite as G-expressions.
2022-01-05 03:54:05 +01:00
8e25b0f64a
gnu: lucene++: Update to 3.0.8.
...
* gnu/packages/rdf.scm (lucene++): Update to 3.0.8.
[source]: Add a nice snippet.
[arguments]: Don't install the entire gtest suite.
Add a custom 'check phase.
[inputs]: Add zlib.
2022-01-05 03:54:05 +01:00
0e3fd2b64b
gnu: hangups: Update to 0.4.16.
...
* gnu/packages/messaging.scm (hangups): Update to 0.4.16.
[propagated-inputs]: Upgrade python-protobuf-3.6 to python-protobuf.
2022-01-05 03:54:05 +01:00
0e96a71816
gnu: amsynth: Use G-expressions.
...
* gnu/packages/music.scm (amsynth)[arguments]:
Rewrite as G-expressions.
2022-01-05 03:54:04 +01:00
1cba8def9f
gnu: amsynth: Update to 1.12.3.
...
* gnu/packages/music.scm (amsynth): Update to 1.12.3.
2022-01-05 03:54:04 +01:00
de099ca5b9
gnu: moreutils: Use G-expressions.
...
* gnu/packages/moreutils.scm (moreutils)[arguments]:
Rewrite as G-expressions.
2022-01-05 03:54:04 +01:00
479a1f0db5
gnu: moreutils: Update to 0.67.
...
* gnu/packages/moreutils.scm (moreutils): Update to 0.67.
2022-01-05 03:54:04 +01:00
4b784c6846
gnu: nbd: Update to 3.23.
...
* gnu/packages/networking.scm (nbd): Update to 3.23.
2022-01-05 03:54:04 +01:00
e662bdc489
gnu: itcl: Use G-expressions.
...
* gnu/packages/tcl.scm (itcl)[arguments]:
Rewrite as G-expressions.
2022-01-05 03:54:04 +01:00
0ae5e25419
gnu: itcl: Update to 4.2.2.
...
* gnu/packages/tcl.scm (itcl): Update to 4.2.2.
2022-01-05 03:54:04 +01:00
14564f5847
gnu: linuxdcpp: Reanimate.
...
* gnu/packages/direct-connect.scm (linuxdcpp)[source]: Add patch and
snippet to fix build.
* gnu/packages/patches/linuxdcpp-openssl-1.1.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-01-05 03:54:03 +01:00
f7e6e93662
gnu: rinutils: Respect #:tests?
...
* gnu/packages/games.scm (rinutils)[arguments]: Respect #:tests? in 'check.
2022-01-05 03:54:03 +01:00
e675030fba
gnu: Add fcrackzip.
...
* gnu/packages/compression.scm (fcrackzip): New variable.
2022-01-05 00:21:26 +01:00
4c812db049
gnu: emacs-goto-chg: Update to 1.7.4.
...
* gnu/packages/emacs-xyz.scm (emacs-goto-chg): Update to 1.7.4.
2022-01-04 19:47:15 +01:00
b9c5dff57f
gnu: Add r-varhandle.
...
* gnu/packages/cran.scm (r-varhandle): New variable.
2022-01-04 17:11:49 +01:00
48c2983d95
gnu: snap: Update to 7.0.3.
...
* gnu/packages/education.scm (snap): Update to 7.0.3.
2022-01-04 16:53:56 +01:00
603dd56be1
gnu: r-archr: Update to 1.0.1-1.92ab814.
...
* gnu/packages/bioinformatics.scm (r-archr): Update to 1.0.1-1.92ab814.
2022-01-04 16:08:03 +01:00
b80b55e76d
gnu: asymptote: Update to 2.74.
...
* gnu/packages/plotutils.scm (asymptote): Update to 2.74.
[native-inputs]: Add autoconf, automake, boost, rapidjson, texlive-hyperref,
texlive-latex-media9, texlive-latex-ocgx2.
[inputs]: Add libtirpc.
[arguments]<#:configure-flags>: Use gexps.
<#:phases>: Fix more include statements. Add phase to prevent
hard-coding tirpc include directory. Also force boostrapping. Remove
trailing #T.
2022-01-04 16:05:40 +01:00
9235dd136e
gnu: Add mbed-tools.
...
* gnu/packages/embedded.scm (mbed-tools): New variable.
2022-01-04 13:03:05 +01:00
84207eea2c
gnu: Add python-pdoc3.
...
* gnu/packages/patches/python-pdoc3-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/local.mk (python-pdoc3): New variable.
2022-01-04 12:45:29 +01:00
e62c35f506
gnu: stlink: Update the uri.
...
* gnu/packages/embedded.scm (stlink)[origin]: Update it.
2022-01-04 12:08:58 +01:00
431546b024
gnu: stlink: Update to 1.7.0.
...
* gnu/packages/embedded.scm (stlink): Update to 1.7.0.
[home-page]: Update it.
2022-01-04 12:08:01 +01:00
44fdd27bf2
gnu: diffoscope: Update to 198.
...
* gnu/packages/diffoscope.scm (diffoscope): Update to 198.
2022-01-04 05:39:01 +01:00
18af90f089
gnu: mpv: Update to 0.34.1.
...
* gnu/packages/video.scm (mpv): Update to 0.34.1.
2022-01-04 05:39:01 +01:00
9bffe30be8
gnu: pgloader: Use G-expressions.
...
* gnu/packages/databases.scm (pgloader)[arguments]:
Rewrite as G-expressions.
[inputs]: Remove input labels.
2022-01-04 05:39:01 +01:00
1ae855a549
gnu: pgloader: Update to 3.6.3.
...
* gnu/packages/databases.scm (pgloader): Update to 3.6.3.
2022-01-04 05:39:01 +01:00
a0c6b55881
gnu: direvent: Update to 5.3.
...
* gnu/packages/admin.scm (direvent): Update to 5.3.
[source]: Drop hard-to-maintain snippet…
[arguments]: …in favour of a wider regexp in the 'substitute-file-names
phase, renamed from 'patch-/bin/sh, as we also patch "/bin/kill" to keep
the tests passing.
2022-01-04 05:39:01 +01:00
65fdb84d7c
gnu: direvent: Use G-expressions.
...
* gnu/packages/admin.scm (direvent)[source, arguments]:
Rewrite using G-expressions. Don't explicitly return #t from phases.
2022-01-04 05:39:01 +01:00
99e4e23411
gnu: fortune-mod: Update to 3.12.0.
...
* gnu/packages/games.scm (fortune-mod): Update to 3.12.0.
[arguments]: Adjust 'delete-failing-test phase accordingly.
[native-inputs]: Add docbook-xml-5, docbook-xsl, and
perl-app-xml-docbook-builder.
2022-01-04 05:39:00 +01:00
106aac634d
gnu: fortune-mod: Use G-expressions.
...
* gnu/packages/games.scm (fortune-mod)[arguments]:
Rewrite as G-expressions. Split up misnamed 'fix-build-env phase into
'enter-build-directory, 'copy-cmake-modules, and 'delete-failing-test.
Don't explicitly return #t from phases.
[native-inputs]: Remove input labels. Remove shlomif-cmake-modules.
2022-01-04 05:39:00 +01:00
b7c03093eb
gnu: rinutils: Update to 0.10.0.
...
* gnu/packages/games.scm (rinutils): Update to 0.10.0.
2022-01-04 05:39:00 +01:00
0f97e0af40
gnu: rinutils: Use G-expressions.
...
* gnu/packages/games.scm (rinutils)[arguments]:
Rewrite as G-expressions. Rename misnamed 'fix-build-env.
[native-inputs]: Remove input labels. Remove shlomif-cmake-modules.
2022-01-04 05:39:00 +01:00
897ce1c81f
gnu: shlomif-cmake-modules: Update to 89f05caf86078f783873975525230cf4fecede8a.
...
* gnu/packages/games.scm (shlomif-cmake-modules): Update to commit
89f05caf86078f783873975525230cf4fecede8a.
2022-01-04 05:39:00 +01:00
91f1ce1dda
gnu: Add perl-app-xml-docbook-builder.
...
* gnu/packages/perl.scm (perl-app-xml-docbook-builder): New public variable.
2022-01-04 05:39:00 +01:00
e9a5b1eeb3
gnu: fasm: Update to 1.73.29.
...
* gnu/packages/assembly.scm (fasm): Update to 1.73.29.
2022-01-04 05:39:00 +01:00
0c5a58e34d
gnu: emacs-epkg: Update to 3.3.2.
...
* gnu/packages/emacs-xyz.scm (emacs-epkg): Update to 3.3.2.
[arguments]<#:phases>: Add phases to build documentation and follow upstream
directory structure.
[native-inputs]: Add TEXINFO.
2022-01-04 00:54:53 +01:00
00a7268afe
gnu: emacs-tide: Update to 4.5.4.
...
* gnu/packages/emacs-xyz.scm (emacs-tide): Update to 4.5.4.
[propagated-inputs]: Re-order alphabetically.
2022-01-04 00:35:13 +01:00
cdb0e8cdaa
gnu: emacs-bluetooth: Update to 0.3.
...
* gnu/packages/emacs-xyz.scm (emacs-bluetooth): Update to 0.3.
2022-01-04 00:32:25 +01:00
13a7336594
gnu: naev: Update to 0.9.1.
...
* gnu/packages/games.scm (naev): Update to 0.9.1.
[source]: Use URL-FETCH.
[arguments]<#:phases>: Remove keyword.
[native-inputs]: Remove NAEV-ARTWORK.
(naev-artwork): Remove variable.
2022-01-04 00:22:09 +01:00
92faad0adb
gnu: openmw: Update to 0.47.0.
...
* gnu/packages/game-development.scm (openmw): Update to 0.47.0.
[arguments]: Add "-DOPENMW_USE_SYSTEM_RECASTNAVIGATION=ON" to
configure-flags.
[inputs]: Use new simplified format. Add new dependencies lz4 and
recastnavigation.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-03 15:10:03 -05:00
dececca2fe
gnu: bullet: Build with double precision arithmetics.
...
* gnu/packages/game-development.scm (bullet)[arguments]: Add configure flag for
double precision arithmetics.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-03 15:10:03 -05:00
0aac289d61
gnu: Add recastnavigation.
...
* gnu/packages/game-development.scm (recastnavigation): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-03 15:10:03 -05:00
0d15873d7e
gnu: Flatpak: Propagate GnuPG 2.2.32.
...
This fixes a profile collision between gnupg package variants:
https://issues.guix.gnu.org/52981
* gnu/packages/package-management.scm (flatpak)[propagated-inputs]:
Replace GNUPG with GNUPG-2.2.32.
2022-01-03 14:05:08 -05:00
a41ad2c1f1
gnu: Add python-pythonanywhere.
...
* gnu/packages/python-xyz.scm (python-pythonanywhere): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-03 19:32:08 +01:00
cde3376b35
home: services: Make strings in Gexps translateble.
...
* gnu/home/services.scm (%initialize-gettext): New variable.
(compute-on-first-login-script): Use it.
(compute-on-change-gexp): Likewise.
* gnu/home/services/symlink-manager.scm (update-symlinks-script): Likewise.
* po/guix/POTFILES.in: Add gnu/home-services.scm and
gnu/home/services/symlink-manager.scm.
Suggested-by: Ludovic Courtès <ludo@gnu.org>
Link: <https://yhetil.org/guix-bugs/87sfvy8k1u.fsf@gnu.org >
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-03 19:32:07 +01:00
2719dfa631
gnu: rust-system-deps-3: Fix and build package.
...
* gnu/packages/crates-io.scm (rust-system-deps-3)[tests?]: Set to #f.
[skip-build?]: Remove argument.
[cargo-development-inputs]: Add rust-assert-matches-1, rust-itertools-0.10
and rust-lazy-static-1.
[description]: Re-indent.
[license]: Add missing field.
2022-01-03 12:39:27 -05:00
6af08a53f5
gnu: rust-assert-matches-1: Update to 1.5.0.
...
* gnu/packages/crates-io.scm (rust-assert-matches-1): Update to 1.5.0.
2022-01-03 12:39:27 -05:00
d87c292d7d
gnu: go-github-com-stretchr-objx: Remove vendored code.
...
* gnu/packages/golang.scm (go-github-com-stretchr-objx)[source]: Add
snippet to remove vendor directory.
[propagated-inputs]: Add go-github-com-davecgh-go-spew,
go-github-com-pmezard-go-difflib
[inputs]: Add go-github-com-stretchr-testify-bootstrap.
[native-inputs]" Add go-gopkg-in-yaml-v2.
(go-github-com-stretchr-testify-bootstrap): New variable.
2022-01-03 16:04:33 +02:00
d2c8f1da53
gnu: go-github-com-fatih-color: Remove vendored code.
...
* gnu/packages/golang.scm (go-github-com-fatih-color)[source]: Add
snippet.
[propagated-inputs]: Add go-github-com-mattn-go-colorable,
go-github-com-mattn-go-isatty.
2022-01-03 16:04:31 +02:00
98d93f9769
gnu: Add r-anndata.
...
* gnu/packages/cran.scm (r-anndata): New variable.
2022-01-03 14:59:16 +01:00
ab6d56d01d
Revert "gnu: xpra: Update to 4.3."
...
This reverts commit 3debb27e7c
2022-01-03 09:15:58 +01:00
8189ce1705
gnu: pies: Update to 1.7.
...
* gnu/packages/admin.scm (pies): Update to 1.7.
[arguments]: Remove trailing #t from phases.
2022-01-03 09:30:41 +02:00
2e09516ea5
gnu: alive: Update to 2.0.5.
...
* gnu/packages/admin.scm (alive): Update to 2.0.5.
[inputs]: Replace guile-2.0 with guile-3.0.
[native-inputs]: Add lzip.
2022-01-03 09:19:47 +02:00
4fa9251b81
gnu: rush: Update to 2.2.
...
* gnu/packages/rush.scm (rush): Update to 2.2.
2022-01-03 09:15:30 +02:00
03fd530875
gnu: cflow: Update to 1.7.
...
* gnu/packages/code.scm (cflow): Update to 1.7.
[native-inputs]: Remove labels.
2022-01-03 09:11:03 +02:00
83e6304868
gnu: go-github-com-chris-ramon-douceur: Adjust inputs.
...
* gnu/packages/golang.scm (go-github-com-chris-ramon-douceur)
[native-inputs]: Move go-github-com-aymerick-douceur,
go-github-com-gorilla-css from here ...
[propagated-inputs]: ... to here.
2022-01-03 08:40:09 +02:00
cdf050be91
gnu: xsnow: Simplify inputs.
...
* gnu/packages/toys.scm (xsnow)[inputs]: Remove labels.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 22:33:28 -05:00
19109f549e
gnu: xsnow: Update to 3.4.2.
...
* gnu/packages/toys.scm (xsnow): Update to 3.4.2.
[source, home-page]: Update URLs.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 22:33:28 -05:00
883be45584
gnu: beets-bandcamp: Fix build.
...
This fixes a build failure in the 'sanity-check' phase.
* gnu/packages/music.scm (beets-bandcamp)[propagated-inputs]: Add
python-confuse, python-jellyfish, python-mediafile, python-munkres,
python-musicbrainzngs and python-unidecode.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 22:24:32 -05:00
01ec5efff7
gnu: gcompris: Fix build with GCC 10.
...
* gnu/packages/education.scm (gcompris)[arguments]: Add -fcommon to CFLAGS.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 13:16:51 -05:00
dfc5d5247f
services: guix-build-coordinator: Fix variable name in agent config.
...
* gnu/services/guix.scm (<guix-build-coordinator-agent-configuration>): Fix
variable name.
* doc/guix.texi (Guix Services): Update accordingly.
2022-01-02 17:47:36 +00:00
b2ed92ec58
gnu: uim: Fix build with GCC 10.
...
* gnu/packages/xorg.scm (uim)[arguments]: Pass "-O2 -g -fcommon"
to #:configure-flags.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 12:42:56 -05:00
1dca8a19ef
gnu: Add guix-build-coordinator/agent-only.
...
This avoids issues where the coordinator component dependencies (like sqitch
and guile-fibers) make it harder to use the agent.
* gnu/packages/package-management.scm (guix-build-coordinator/agent-only): New
variable.
* gnu/services/guix.scm (<guix-build-coordinator-agent-configuration>): Use
the guix-build-coordinator/agent-only package by default.
* doc/guix.texi (Guix Services): Update accordingly.
2022-01-02 17:00:09 +00:00
d6a13efe24
gnu: guix-build-coordinator: Update to 0-45.ea78649.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-45.ea78649.
2022-01-02 16:53:54 +00:00
e59b7f25ae
gnu: go-github-com-androiddnsfix: Rename to go-github-com-mtibben-androiddnsfix.
...
* gnu/packages/golang.scm (go-github-com-androiddnsfix): Rename to
go-github-com-mtibben-androiddnsfix.
(aws-vault)[native-inputs]: Adjust accordingly.
2022-01-02 15:43:31 +02:00
4b5ab4aaff
gnu: go-github-com-kingpin: Rename to go-github-com-alecthomas-kingpin.
...
* gnu/packages/golang.scm (go-github-com-kingpin): Rename to
go-github-com-alecthomas-kingpin.
(aws-vault)[native-inputs]: Adjust accordingly.
2022-01-02 15:43:30 +02:00
5868ac4754
gnu: go-github-com-go-libsecret: Rename to go-github-com-gsterjov-go-libsecret.
...
* gnu/packages/golang.scm (go-github-com-go-libsecret): Rename to
go-github-com-gsterjov-go-libsecret.
(go-github-com-99designs-go-keyring, aws-vault)[native-inputs]: Adjust
accordingly.
2022-01-02 15:43:30 +02:00
81f6639f81
gnu: go-github-com-percent: Rename to go-github-com-mtibben-percent.
...
* gnu/packages/golang.scm (go-github-com-percent): Rename to
go-github-com-mtibben-percent.
(aws-vault, go-github-com-99designs-go-keyring)[native-inputs]: Adjust
accordingly.
2022-01-02 15:43:30 +02:00
bcbed8a676
gnu: go-github-com-olekukonko-tablewriter: Adjust inputs.
...
* gnu/packages/golang.scm (go-github-com-olekukonko-tablewriter)
[native-inputs]: Move go-github.com-mattn-go-runewidth to ...
[propagated-inputs]: ... here.
2022-01-02 15:43:30 +02:00
4dbd793d2b
gnu: go-github-com-aws-aws-sdk-go: Adjust inputs.
...
* gnu/packages/golang.scm (go-github-com-aws-aws-sdk-go)
[native-inputs]: Move go-github-com-jmespath-go-jmespath to ...
[propagated-inputs]: ... here.
2022-01-02 15:43:27 +02:00
06bd982923
gnu: icedove: Update to 91.4.1 [security fixes].
...
Fixes CVE-2021-4126 and CVE-2021-44538.
* gnu/packages/gnuzilla.scm (icedove): Update to 91.4.1.
2022-01-02 14:27:49 +01:00
fea60a2fff
gnu: 0ad: Fix building with mozjs version other than 78.6.
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Fixes <https://issues.guix.gnu.org/52913 >.
* gnu/packages/games.scm (0ad)[native-inputs]: Remove labels.
[arguments]: Add 'fix-mozjs-compatibility' phase.
2022-01-02 13:51:49 +01:00
66f86ebb74
gnu: emacs-with-editor: Update to 3.1.0.
...
* gnu/packages/emacs-xyz.scm (emacs-with-editor): Update to 3.1.0.
[arguments]<#:phases>: Add phases to mirror upstream directory layout
modification.
2022-01-02 11:46:33 +01:00
a655d731e2
gnu: emacs-chronometrist: Remove trailing #T.
...
* gnu/packages/emacs-xyz.scm (emacs-chronometrist)[arguments]<#:phases>:
Remove trailing #T.
2022-01-02 11:20:57 +01:00
adf8651a5b
gnu: emacs-corfu: Update to 0.17.
...
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.17.
2022-01-02 11:18:06 +01:00
6d0ef84f55
gnu: emacs-consult: Update to 0.14.
...
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.14.
2022-01-02 11:15:46 +01:00
26a19cd3b1
gnu: emacs-marginalia: Update to 0.11.
...
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.11.
2022-01-02 11:04:49 +01:00
797f2a15d8
gnu: emacs-moody: Update to 0.7.0.
...
* gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.7.0.
2022-01-02 11:02:38 +01:00
738a71c286
gnu: emacs-no-littering: Update to 1.2.4.
...
* gnu/packages/emacs-xyz.scm (emacs-no-littering): Update to 1.2.4.
2022-01-02 11:00:34 +01:00
a98102bb34
gnu: emacs-orglink: Update to 1.2.0.
...
* gnu/packages/emacs-xyz.scm (emacs-orglink): Update to 1.2.0.
2022-01-02 10:38:11 +01:00
15fd8dacb5
gnu: emacs-pdf-tools: Update to 0.91.
...
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.91.
2022-01-02 10:36:41 +01:00
d3819cd23a
gnu: emacs-vertico: Update to 0.18.
...
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.18.
2022-01-02 10:33:31 +01:00
7e130d4600
gnu: swayidle: Update to 1.7.
...
* gnu/packages/wm.scm (swayidle): Update to 1.7.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 00:44:41 -05:00
b844e88e60
gnu: mako: Update to 1.6.
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* gnu/packages/wm.scm (mako): Update to 1.6.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 00:44:41 -05:00
3381e2d3ed
gnu: wlr-randr: Update to 0.2.0.
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* gnu/packages/wm.scm (wrl-randr): Update to 0.2.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 00:44:41 -05:00
0e4a23098a
gnu: Add odio-sacd.
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* gnu/packages/audio.scm (odio-sacd): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 00:36:18 -05:00
830344a96e
gnu: Add libodiosacd.
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* gnu/packages/audio.scm (libodiosacd): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-02 00:36:17 -05:00
a83dc5022b
gnu: widelands: Fix build against boost 1.77.
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Widelands fails to build with boost 1.77 due to a missing include in one
of Wideland's header files that was previously indirectly included by
boost 1.76.
* gnu/packages/patches/widelands-add-missing-map-include.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/games.scm (widelands)[source]: Add patch.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-01 23:22:59 -05:00
6f83a503af
gnu: freegish: Update to 0-2.21977ee5f.
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This fixes the build when using GCC 10.
* gnu/packages/games.scm (freegish): Update to 0-2.21977ee5f.
Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-01 22:53:42 -05:00
Ricardo Wurmus
Leo Famulari
Tobias Geerinckx-Rice
Maxim Cournoyer
Tanguy Le Carrour
Sharlatan Hellseher
Maxime Devos
Artyom V. Poptsov
Ludovic Courtès
Taiju HIGASHI
Ryan Sundberg
raid5atemyhomework
Arun Isaac
John Kehayias
Nicolas Goaziou
Felix Gruber
Marius Bakke
Mathieu Othacehe
Filip Lajszczak
Xinglu Chen
Efraim Flashner
Lars-Dominik Braun
kiasoc5
Christopher Baines
Lu Hui
Jonathan Brielmaier
Guillaume Le Vaillant
Arjan Adriaanse