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71415 Commits (f9250b47d58540516ac3817568e9e475f976ec8f)

Author SHA1 Message Date
Nicolas Goaziou f446806107
gnu: emacs-no-littering: Update to 1.2.3.
* gnu/packages/emacs-xyz.scm (emacs-no-littering): Update to 1.2.3.
2021-10-03 21:44:18 +02:00
Nicolas Goaziou 61faa4914e
gnu: emacs-minions: Update to 0.3.6.
* gnu/packages/emacs-xyz.scm (emacs-minions): Update to 0.3.6.
2021-10-03 21:43:28 +02:00
Nicolas Goaziou 6948f57052
gnu: emacs-ghub: Update to 3.5.4.
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.5.4.
2021-10-03 21:42:35 +02:00
Nicolas Goaziou 47a82799c5
gnu: emacs-crdt: Update to 0.2.7.
* gnu/packages/emacs-xyz.scm (emacs-crdt): Update to 0.2.7.
2021-10-03 21:24:17 +02:00
Tobias Geerinckx-Rice 91389d438b
gnu: weechat: Update to 3.3.
* gnu/packages/irc.scm (weechat): Update to 3.3.
2021-10-03 19:23:51 +02:00
Tobias Geerinckx-Rice f856271517
gnu: unionfs-fuse: Update to 2.2.
* gnu/packages/linux.scm (unionfs-fuse): Update to 2.2.
2021-10-03 19:23:51 +02:00
Tobias Geerinckx-Rice 792a688103
gnu: gramps: Update to 5.1.4.
* gnu/packages/genealogy.scm (gramps): Update to 5.1.4.
2021-10-03 19:23:51 +02:00
Tobias Geerinckx-Rice 25b62e7bbb
gnu: freeorion: Update to 0.4.10.2.
* gnu/packages/games.scm (freeorion): Update to 0.4.10.2.
2021-10-03 19:23:51 +02:00
Tobias Geerinckx-Rice d536083f33
gnu: freeorion: Don't use unstable tarball.
* gnu/packages/games.scm (freeorion)[source]: Use GIT-FETCH and
GIT-FILE-NAME.  Remove explicit #t snippet return value.
2021-10-03 19:23:50 +02:00
Tobias Geerinckx-Rice d9ac466b7f
gnu: corsix-th: Update to 0.65.1.
* gnu/packages/games.scm (corsix-th): Update to 0.65.1.
2021-10-03 19:23:50 +02:00
Tobias Geerinckx-Rice 78662bf8e1
gnu: yadifa: Update to 2.5.1 [security fixes].
* gnu/packages/dns.scm (yadifa): Update to 2.5.1.
2021-10-03 19:23:50 +02:00
Tobias Geerinckx-Rice ddec076b96
gnu: sx: Don't propagate xauth.
* gnu/packages/xdisorg.scm (sx)[arguments]: Patch sx to refer to xauth.
[propagated-inputs]: Move xauth from here…
[inputs]: …to here.
2021-10-03 19:23:50 +02:00
Tobias Geerinckx-Rice 328fac4789
gnu: sx: Update to 2.1.7.
* gnu/packages/xdisorg.scm (sx): Update to 2.1.7.
2021-10-03 19:23:50 +02:00
Tobias Geerinckx-Rice 169ae280af
gnu: dnsmasq: Prepare for cross-compilation.
* gnu/packages/dns.scm (dnsmasq)[arguments]: Use CC-FOR-TARGET.
2021-10-03 19:23:50 +02:00
Tobias Geerinckx-Rice 55483f8c44
gnu: dnsmasq: Update to 2.86.
* gnu/packages/dns.scm (dnsmasq): Update to 2.86.
2021-10-03 19:23:50 +02:00
Tobias Geerinckx-Rice d68898d1db
gnu: squashfs-tools-ng: Update to 1.1.3.
* gnu/packages/compression.scm (squashfs-tools-ng): Update to 1.1.3.
2021-10-03 19:23:49 +02:00
Tobias Geerinckx-Rice 9b9c74eaa7
gnu: ccache: Update to 4.4.2.
* gnu/packages/ccache.scm (ccache): Update to 4.4.2.
[source]: Remove patch.
[arguments]: Substitute nonexistent compgen.
* gnu/packages/patches/ccache-fix-basedir-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-10-03 19:23:49 +02:00
Tobias Geerinckx-Rice dfa6e6cad5
gnu: snapraid: Update to 11.6.
* gnu/packages/backup.scm (snapraid): Update to 11.6.
2021-10-03 19:23:49 +02:00
Tobias Geerinckx-Rice 29b9c2e6ea
gnu: libhx: Update to 4.0.1.
* gnu/packages/c.scm (libhx): Update to 4.0.1.
[source, home-page]: Update URL.
2021-10-03 19:23:49 +02:00
Tobias Geerinckx-Rice 5d26e2ee2b
gnu: os-prober: Update to 1.79.
* gnu/packages/bootloaders.scm (os-prober): Update to 1.79.
2021-10-03 19:23:49 +02:00
Tobias Geerinckx-Rice 83128c97d4
gnu: bcachefs-tools: Update to 0.1-11.3785043.
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-11.3785043.
2021-10-03 19:23:48 +02:00
Arun Isaac c98c9c5142
gnu: guile-dbd-sqlite3: Use normal variable instead of @ reference.
* gnu/packages/guile-xyz.scm (guile-dbd-sqlite3)[inputs]: Replace (@ (gnu
packages compression) zlib) with zlib.
2021-10-03 19:32:51 +05:30
Arun Isaac 2b9e6f1521
gnu: Add guile-dbd-mysql.
* gnu/packages/guile-xyz.scm (guile-dbd-mysql): New variable.
2021-10-03 19:32:50 +05:30
Arun Isaac 9a8ce7e859
gnu: guile-dbi-bootstrap: Remove package.
guile-dbi-bootstrap was formerly used by guile-dbd-sqlite3 and
guile-dbd-postgresql. It is no longer required now that guile-dbi uses
native-search-paths to find guile-dbd-* libraries.

* gnu/packages/guile-xyz.scm (guile-dbi-bootstrap): Delete variable.
2021-10-03 19:32:50 +05:30
Arun Isaac 8f1d146033
gnu: guile-dbd-postgresql: Inherit from guile-dbi.
* gnu/packages/guile-xyz.scm (guile-dbd-postgresql): Inherit from
guile-dbi. Remove version, source, build-system, home-page and license fields.
[arguments]: Remove patch-src/Makefile.am phase. Do not return #t from phases.
[native-inputs]: Replace guile-dbi-bootstrap with guile-dbi.
2021-10-03 19:32:50 +05:30
Arun Isaac c4698e50f2
gnu: guile-dbd-sqlite3: Inherit from guile-dbi.
* gnu/packages/guile-xyz.scm (guile-dbd-sqlite3): Inherit from
guile-dbi. Remove version, source, build-system, home-page and license fields.
[arguments]: Replace chdir phase. Delete patch-extension-path phase.
[native-inputs]: Replace guile-dbi-bootstrap with guile-dbi.
2021-10-03 19:32:50 +05:30
Arun Isaac 658cc8b25f
gnu: guile-dbi: Update to 2.1.8.
* gnu/packages/guile-xyz.scm (guile-dbi): Update to 2.1.8.
[arguments]: Add chdir phase.
2021-10-03 19:32:50 +05:30
Arun Isaac 362e33700d
gnu: guile-dbi: Do not return #t from custom phases.
* gnu/packages/guile-xyz.scm (guile-dbi)[arguments]: Do not return #t from
custom phases.
2021-10-03 19:32:50 +05:30
Arun Isaac 9a63dc335f
gnu: guile-dbi: Search for dbd libraries using native-search-paths.
* gnu/packages/guile-xyz.scm (guile-dbi)[arguments]: Do not set LDFLAGS and
RPATH in #:make-flags.
[inputs]: Remove guile-dbd-sqlite3 and guile-dbd-postgresql.
[native-search-paths]: Add GUILE_DBD_PATH.
2021-10-03 19:32:50 +05:30
Arun Isaac caa4f7cd78
gnu: guile-dbi: Remove hard-coded guile effective version.
* gnu/packages/guile-xyz.scm (guile-dbi)[arguments]: Import
target-guile-effective-version from (guix build guile-build-system). Use
target-guile-effective-version to determine the guile effective version.
2021-10-03 19:32:49 +05:30
Arun Isaac 6849b60f1b
gnu: guile-dbi: Update upstream source.
* gnu/packages/guile-xyz.scm (guile-dbi)[source]: Use git-fetch. Update URI.
[home-page]: Update URI.
[native-inputs]: Add autoconf, automake, libtool, perl and texinfo.
2021-10-03 19:32:44 +05:30
Matthew James Kraai 7d59858886
gnu: xpra: Update to 4.2.2.
* gnu/packages/xorg.scm (xpra): Update to 4.2.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-03 15:46:10 +03:00
Efraim Flashner e9d0ebe446
gnu: python-gnupg: Honor #:tests? flag.
* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Adjust custom 'check
phase to honor the #:tests? flag.
2021-10-03 15:21:00 +03:00
Efraim Flashner 69c7dd8090
gnu: python-gnupg: Build with gnupg.
* gnu/packages/gnupg.scm (python-gnupg)[native-inputs]: Replace gnupg-1
with gnupg.
2021-10-03 15:19:06 +03:00
Zac Berkowitz 2c07d5ee12
gnu: python-gnupg: Update to 0.4.7.
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.7.

[homepage]: change to https://pythonhosted.org/python-gnupg/index.html due
to redirect.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-03 15:11:16 +03:00
Efraim Flashner b3fd8dafb0
gnu: fzf: Fix fish functions location.
Reported by wp1148917-web <drwilly@drwilly.de>.

* gnu/packages/terminals.scm (fzf)[arguments]: Adjust
'install-completions phase to install the fish vendor functions into the
correct location.
2021-10-03 14:57:29 +03:00
Efraim Flashner 080ba97652
gnu: wget2: Update to 2.0.0.
* gnu/packages/wget.scm (wget2): Update to 2.0.0.
2021-10-03 14:37:33 +03:00
Vinicius Monego 62a24dd9a1
gnu: gthumb: Add optional dependencies.
* gnu/packages/gnome.scm (gthumb)[native-inputs]: Order alphabetically.
[inputs]: Order alphabetically. Add colord, libheif, librsvg, libwebp.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-02 17:23:11 +02:00
Vinicius Monego ae1c206b26
gnu: gthumb: Update to 3.12.0.
* gnu/packages/gnome.scm (gthumb): Update to 3.12.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-02 17:23:08 +02:00
Thomas Albers 5a1cf7d315
gnu: amssynth: Update to 1.12.2.
* gnu/packages/music.scm (amsynth): Update to 1.12.2.
[arguments]: Adjust 'patch-file-names' phase.
[inputs]: Remove GTKMM-2 and LASH.
[propagated-inputs]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-02 17:20:33 +02:00
Leo Famulari 21aeb62437
gnu: linux-libre 5.4: Update to 5.4.150.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.150.
(linux-libre-5.4-pristine-source): Update hash.
2021-10-02 10:15:07 -04:00
Leo Famulari 3d9bc40f1c
gnu: linux-libre 5.10: Update to 5.10.70.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.70.
(linux-libre-5.10-pristine-source): Update hash.
2021-10-02 10:15:07 -04:00
Leo Famulari 5feff0b863
gnu: linux-libre: Update to 5.14.9.
* gnu/packages/linux.scm (linux-libre-5.14-version): Update to 5.14.9.
(linux-libre-5.14-pristine-source): Update hash.
2021-10-02 10:14:55 -04:00
宋文武 09482dcb06
gnu: sdl-ttf: Update to 2.0.11.1.
* gnu/packages/sdl.scm (sdl-ttf): Update to 2.0.11.1.
2021-10-02 21:35:09 +08:00
Marius Bakke 159b94cfb5
gnu: ungoogled-chromium: Update to 94.0.4606.71-1.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 94.
(arch-patch, %arch-revision, %arch-patches): New variables.
(%chromium-version): Set to 94.0.4606.71.
(%ungoogled-revision, %ungoogled-origin): Update to 94.0.4606.71-1.
(ungoogled-chromium-snippet): Apply %ARCH-PATCHES.
(ungoogled-chromium)[version]: Use %UNGOOGLED-REVISION if it matches
%CHROMIUM-VERSION, otherwise use a "-0" suffix.
[arguments]: Adjust renamed configure flag.
[inputs]: Change from HARFBUZZ to HARFBUZZ-3.0.
2021-10-02 13:13:12 +02:00
Marius Bakke df9361bc05
gnu: uBlock Origin: Update to 1.38.2.
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.38.2.
2021-10-02 13:13:11 +02:00
Marius Bakke 74f2bb1b77
gnu: harfbuzz: Add 3.0.
* gnu/packages/gtk.scm (harfbuzz-3.0): New public variable.
2021-10-02 13:13:11 +02:00
Kaelyn Takata 017bf198f4
gnu: zfs: Update to 2.1.1.
* gnu/packages/file-systems.scm (zfs): Update to 2.1.1.
[arguments]: Do not return #t from custom phases.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-10-02 16:28:59 +05:30
Liliana Marie Prikler fed255a3d9
gnu: komikku: Update to 0.34.1.
* gnu/packages/gnome.scm (komikku): Update to 0.34.1.
2021-10-02 12:11:19 +02:00
Guillaume Le Vaillant 25da2e49cf
gnu: gnuradio: Add missing input for gr_filter_design tool.
* gnu/packages/radio.scm (gnuradio)[inputs]: Add python-pyqtgraph.
2021-10-02 11:35:04 +02:00
Leo Prikler 50ca41ad70
gnu: Move libgme to audio.scm.
* gnu/packages/music.scm (libgme): Move from here...
* gnu/packages/audio.scm (libgme): ... to here.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-10-02 00:59:53 -04:00
Raghav Gururajan 7ba5ce9447
gnu: Add hwinfo.
* gnu/packages/hardware.scm (hwinfo): New variable.

Co-authored-by: Petr Hodina <phodina@protonmail.com>
2021-10-01 18:10:39 -04:00
Raghav Gururajan 66df86a273
gnu: Add libx86emu.
* gnu/packages/virtualization.scm (libx86emu): New variable.

Co-authored-by: Petr Hodina <phodina@protonmail.com>
Co-authored-by: Vincent Legoll <vincent.legoll@gmail.com>
2021-10-01 18:10:34 -04:00
Tobias Geerinckx-Rice e7f4feba94
gnu: emacs-filladapt: Fix typo in description.
* gnu/packages/emacs-xyz.scm (emacs-filladapt)[description]:
Fix ‘funtions’ typo.
2021-10-01 21:27:36 +02:00
Tobias Geerinckx-Rice d1a24c5bf9
gnu: rtl8812au-aircrack-ng-linux-module: Inherit from rtl8821ce-linux-module.
* gnu/packages/linux.scm (rtl8812au-aircrack-ng-linux-module): Inherit
from the rtl8821ce-linux-module package and remove duplicate fields.
2021-10-01 21:27:36 +02:00
Tobias Geerinckx-Rice aa4d18f33c
gnu: rtl8821ce-linux-module: Honour PARALLEL-BUILD?.
* gnu/packages/linux.scm (rtl8821ce-linux-module)[arguments]:
Spawn multiple build make jobs if requested.
2021-10-01 21:27:35 +02:00
Tobias Geerinckx-Rice 0d38f82120
gnu: rtl8821ce-linux-module: Prepare for cross-compilation.
* gnu/packages/linux.scm (rtl8821ce-linux-module)[arguments]:
Use CC-FOR-TARGET.
2021-10-01 21:27:35 +02:00
Maxim Cournoyer 7dbd06a13b
gnu: proot: Update to 5.2.0-alpha-0.a70023a and fix version string.
* gnu/packages/linux.scm (proot): Update to 5.2.0-alpha-0.a70023a.
[tests?]: Reinstate tests for the aarch64-linux architecture.
[phases]{patch-sources}: Reinstate the test-ssssssss.c test, fixed upstream.
Set the VERSION Make variable, which is normally derived from invoking git.
Delete the new test-docker.sh test file.  Delete the known-to-be-failing
test-cdd39012.sh and test-d92b57ca.sh test files.
{check}: No longer set the PROOT_NO_SECCOMP environment variable as the
upstream issue appears to have been resolved.
[native-inputs]: Use the current coreutils package.
2021-10-01 14:56:35 -04:00
jgart 8827ef8a50
gnu: Add guile-pipe.
* gnu/packages/guile-xyz.scm (guile-pipe): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-10-01 20:27:04 +02:00
Maxim Cournoyer 1aa7f017e8
gnu: Add python-pytest-exploratory.
* gnu/packages/python-check.scm (python-pytest-exploratory): New variable.
2021-10-01 10:24:36 -04:00
Nicolas Goaziou f80ce9b6b3
gnu: emacs-treemacs: Update to 2.9.1.
* gnu/packages/emacs-xyz.scm (emacs-treemacs): Update to 2.9.1.
2021-10-01 10:30:50 +02:00
Nicolas Goaziou 8be41a07ad
gnu: emacs-parseedn: Update to 1.0.4.
* gnu/packages/emacs-xyz.scm (emacs-parseedn): Update to 1.0.4.
2021-10-01 10:29:17 +02:00
Nicolas Goaziou b8d3c8925a
gnu: emacs-parseclj: Update to 1.0.4.
* gnu/packages/emacs-xyz.scm (emacs-parseclj): Update to 1.0.4.
2021-10-01 10:28:09 +02:00
Nicolas Goaziou eefbf1cf16
gnu: emacs-crdt: Update to 0.2.6.
* gnu/packages/emacs-xyz.scm (emacs-crdt): Update to 0.2.6.
2021-10-01 10:26:02 +02:00
Nicolas Goaziou e001855638
gnu: emacs-counsel-etags: Update to 1.10.0.
* gnu/packages/emacs-xyz.scm (emacs-counsel-etags): Update to 1.10.0.
2021-10-01 10:23:14 +02:00
Nicolas Goaziou a66ee01fb7
gnu: emacs-a: Update to 1.0.0.
* gnu/packages/emacs-xyz.scm (emacs-a): Update to 1.0.0.
2021-10-01 10:21:51 +02:00
Nicolas Goaziou 15361025f7
gnu: emacs-org-contrib: Update description.
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update description according
to new repository.
2021-10-01 10:19:47 +02:00
Nicolas Goaziou 0bb3a7289a
gnu: emacs-org: Update to 9.5.
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.5.
2021-10-01 10:15:09 +02:00
Nicolas Goaziou df9d72ddb0
gnu: emacs-org-contrib: Update to 0.2.
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 0.2.
2021-10-01 10:14:52 +02:00
Nicolas Goaziou 88c37b6ac7
gnu: emacs-tramp: Update to 2.5.1.3.
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.1.3.
2021-10-01 09:52:30 +02:00
Xinglu Chen 88d26e13fe
gnu: av-98: Set 'upstream-name' property.
* gnu/packages/web-browsers.scm (av-98)[properties]: Set ‘upstream-name’.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:49 +02:00
Vinicius Monego e29c3e1856
gnu: Remove python-py-bcrypt.
* gnu/packages/python-crypto.scm (python-py-bcrypt, python2-py-bcrypt): Remove
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:49 +02:00
Vinicius Monego 6d6b3a0c3c
gnu: python-passlib: Use python-bcrypt.
py-bcrypt is unmaintained and support will be dropped in passlib 1.8. The
recommended option is bcrypt.

* gnu/packages/python-crypto.scm (python-passlib)[propagated-inputs]: Remove
python-py-bcrypt. Add python-bcrypt.
[arguments]<#:phases>: Don't return #t.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:49 +02:00
Vinicius Monego fee1a41f95
gnu: Remove python2-passlib.
* gnu/packages/python-crypto.scm (python2-passlib): Remove variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:49 +02:00
Xinglu Chen 885c46a7e5
gnu: grokmirror: Update to 2.0.11.
* gnu/packages/version-control.scm (grokmirror): Update to 2.0.11.
[arguments]<#:phases>: Don’t return #t.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:49 +02:00
zimoun 270b30705d
packages: Factorize and document 'computed-origin-method'.
The 'computed-origin-method' had been introduced to work around
limitations of the 'snippet' mechanism.  The procedure was duplicated,
which made it hard to automatically detect packages using it.

* guix/packages.scm (computed-origin-method): Move procedure from...
* gnu/packages/gnuzilla.scm: ...here and...
* gnu/packages/gnuzilla.scm: ...there.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-30 23:44:48 +02:00
Liliana Marie Prikler 56b10709ef
gnu: komikku: Update to 0.34.0.
* gnu/packages/gnome.scm (komikku): Update to 0.34.0.
2021-09-30 21:46:10 +02:00
Maxim Cournoyer e2c58b9150
gnu: Add python-pytest-repeat.
* gnu/packages/python-check.scm (python-pytest-repeat): New variable.
2021-09-30 10:27:55 -04:00
Efraim Flashner 7b59508ca7
gnu: Add julia-documenter.
These four variables are added in the same commit to avoid a cyclic
dependency.

* gnu/packages/julia-xyz.scm (julia-documenter,
julia-documentermarkdown, julia-documentertools): New variables.
(julia-documenter-bootstrap): New hidden variable.
2021-09-30 14:25:48 +03:00
Efraim Flashner 647edfd0d3
gnu: Add julia-sass.
* gnu/packages/julia-xyz.scm (julia-sass): New variable.
2021-09-30 14:20:15 +03:00
Efraim Flashner ac1166fbdb
gnu: Add julia-libsass-jll.
* gnu/packages/julia-jll.scm (julia-libsass-jll): New variable.
2021-09-30 14:20:15 +03:00
Efraim Flashner 60d3484f7c
gnu: Add julia-ansicoloredprinters.
* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
2021-09-30 14:20:14 +03:00
Efraim Flashner 3893f13669
gnu: Add julia-pycall.
* gnu/packages/julia-xyz.scm (julia-pycall): New variable.
2021-09-30 14:20:14 +03:00
Efraim Flashner 25bb6f0822
gnu: Add julia-mlstyle.
* gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
2021-09-30 14:20:14 +03:00
Efraim Flashner 55e1fa89f1
gnu: Add julia-measurements.
* gnu/packages/julia-xyz.scm (julia-measurements): New variable.
2021-09-30 14:20:14 +03:00
Efraim Flashner 8733d2c235
gnu: Add julia-quadgk.
* gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
2021-09-30 14:20:14 +03:00
Ricardo Wurmus b28cd884b8
gnu: r-gdsfmt: Adjust bad substitution.
* gnu/packages/bioconductor.scm (r-gdsfmt)[source]: Include beginning-of-line
anchor in substitution regular expression.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus 0398a89fa1
gnu: r-delayedmatrixstats: Update to 1.14.3.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.3.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus 425c53b568
gnu: r-s4vectors: Update to 0.30.1.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.1.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus c935b25a9e
gnu: r-biocpkgtools: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2.
[propagated-inputs]: Remove r-rex.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus 3683f7f0a8
gnu: r-timeseriesexperiment: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus 74e2186731
gnu: r-gdsfmt: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus 494b7c4eca
gnu: r-cicero: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus 3278daa726
gnu: r-zinbwave: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.2.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus a88e7abf2f
gnu: r-clusterprofiler: Update to 4.0.5.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.5.
[propagated-inputs]: Remove r-rvcheck; add r-yulab-utils.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus 1359fc7fbd
gnu: r-ggtree: Update to 3.0.4.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.4.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun and r-yulab-utils.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus 538618552b
gnu: r-matrixgenerics: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.3.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus ce23a074f0
gnu: r-chippeakanno: Update to 3.26.4.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.4.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus 4fb187b79e
gnu: r-diffbind: Update to 3.2.7.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.7.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus 43ac163bdf
gnu: r-genomicfeatures: Update to 1.44.2.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.2.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus 7c6046a6db
gnu: r-genomeinfodb: Update to 1.28.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.4.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus 0ac7b8b6ad
gnu: r-edger: Update to 3.34.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.1.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus 77a5fdd51c
gnu: r-biocparallel: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.2.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus e8aab58d0c
gnu: r-affxparser: Update to 1.64.1.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.1.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus 74717852d4
gnu: r-r-filesets: Fix build by setting HOME.
* gnu/packages/cran.scm (r-r-filesets)[arguments]: Add build phase to set HOME
variable.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus 655a23fa8b
gnu: r-glinternet: Update to 1.0.12.
* gnu/packages/statistics.scm (r-glinternet): Update to 1.0.12.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus 1322fe25a6
gnu: r-pbapply: Update to 1.5-0.
* gnu/packages/statistics.scm (r-pbapply): Update to 1.5-0.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus 8170baded5
gnu: r-rrcov: Update to 1.6-0.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.6-0.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus 849d0f0f63
gnu: r-fastica: Update to 1.2-3.
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-3.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus f5cfcd0110
gnu: r-sfsmisc: Update to 1.1-12.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-12.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus 745e373982
gnu: r-matrixstats: Update to 0.61.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.61.0.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus a94068188c
gnu: r-r-utils: Update to 2.11.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.11.0.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus 295b984fbc
gnu: r-e1071: Update to 1.7-9.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-9.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus 031c6f65a2
gnu: r-rngtools: Update to 1.5.2.
* gnu/packages/statistics.scm (r-rngtools): Update to 1.5.2.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus 0ac0dfdf7b
gnu: r-xml: Update to 3.99-0.8.
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.8.
2021-09-30 12:39:46 +02:00
Ricardo Wurmus d866a9c829
gnu: r-rmarkdown: Update to 2.11.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.11.
[propagated-inputs]: Add r-jquerylib.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 087ccfcab2
gnu: r-plotrix: Update to 3.8-2.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.8-2.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 3a803eacce
gnu: r-hms: Update to 1.1.1.
* gnu/packages/statistics.scm (r-hms): Update to 1.1.1.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 5317e53ae6
gnu: r-openssl: Update to 1.4.5.
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.5.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 7eef4503e9
gnu: r-roxygen2: Update to 7.1.2.
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.2.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus b64c0e98f6
gnu: r-ade4: Update to 1.7-18.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-18.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 60d7bdf53d
gnu: r-tibble: Update to 3.1.4.
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.4.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 3f631e9a6f
gnu: r-knitr: Update to 1.34.
* gnu/packages/statistics.scm (r-knitr): Update to 1.34.
[propagated-inputs]: Remove r-markdown.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 7465095951
gnu: r-stringi: Update to 1.7.4.
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.4.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 81781becae
gnu: r-digest: Update to 0.6.28.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.28.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus b70124ee3f
gnu: r-survival: Update to 3.2-13.
* gnu/packages/statistics.scm (r-survival): Update to 3.2-13.
2021-09-30 12:39:45 +02:00
Ricardo Wurmus 924dc71e57
gnu: r-mgcv: Update to 1.8-37.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-37.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus 669d047e82
gnu: r-nlme: Update to 3.1-153.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-153.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus 2fa8bf608e
gnu: r-lattice: Update to 0.20-45.
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-45.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus d66de6a370
gnu: r-zoolog: Update to 0.4.1.
* gnu/packages/cran.scm (r-zoolog): Update to 0.4.1.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus 751d7ade8e
gnu: r-paws: Update to 0.1.12.
* gnu/packages/cran.scm (r-paws): Update to 0.1.12.
[propagated-inputs]: Add r-paws-developer-tools and r-paws-end-user-computing.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus dcb4174094
gnu: r-tfautograph: Update to 0.3.2.
* gnu/packages/cran.scm (r-tfautograph): Update to 0.3.2.
[propagated-inputs]: Add r-backports.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus 5c7cca7522
gnu: r-rgeos: Update to 0.5-8.
* gnu/packages/cran.scm (r-rgeos): Update to 0.5-8.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus bac308a73b
gnu: r-exactextractr: Update to 0.7.0.
* gnu/packages/cran.scm (r-exactextractr): Update to 0.7.0.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus 27d0656943
gnu: r-vroom: Update to 1.5.5.
* gnu/packages/cran.scm (r-vroom): Update to 1.5.5.
2021-09-30 12:39:44 +02:00
Ricardo Wurmus 140556595d
gnu: r-rjsonio: Update to 1.3-1.6.
* gnu/packages/cran.scm (r-rjsonio): Update to 1.3-1.6.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus 555a8d0dd7
gnu: r-striprtf: Update to 0.5.3.
* gnu/packages/cran.scm (r-striprtf): Update to 0.5.3.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus c88e63e709
gnu: r-mlr3tuning: Update to 0.9.0.
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.9.0.
[propagated-inputs]: Add r-digest.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus c9798d0525
gnu: r-bbotk: Update to 0.4.0.
* gnu/packages/cran.scm (r-bbotk): Update to 0.4.0.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus 7a576a4b4e
gnu: r-mlr3misc: Update to 0.9.4.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.4.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus e647344b59
gnu: r-mlr3measures: Update to 0.4.0.
* gnu/packages/cran.scm (r-mlr3measures): Update to 0.4.0.
2021-09-30 12:39:43 +02:00
Ricardo Wurmus 6369034dad
gnu: r-lgr: Update to 0.4.3.
* gnu/packages/cran.scm (r-lgr): Update to 0.4.3.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus f05c2f1232
gnu: r-dials: Update to 0.0.10.
* gnu/packages/cran.scm (r-dials): Update to 0.0.10.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus 9fe7038517
gnu: r-flexsurv: Update to 2.1.
* gnu/packages/cran.scm (r-flexsurv): Update to 2.1.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus 4e57e2c71d
gnu: r-cpp11: Update to 0.4.0.
* gnu/packages/cran.scm (r-cpp11): Update to 0.4.0.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus 9b497264e8
gnu: r-brms: Update to 2.16.1.
* gnu/packages/cran.scm (r-brms): Update to 2.16.1.
2021-09-30 12:39:42 +02:00
Ricardo Wurmus 8838350a12
gnu: r-posterior: Update to 1.1.0.
* gnu/packages/cran.scm (r-posterior): Update to 1.1.0.
[propagated-inputs]: Add r-matrixstats.
2021-09-30 12:39:41 +02:00
Ricardo Wurmus 2a2880848c
gnu: r-openmx: Update to 2.19.8.
* gnu/packages/cran.scm (r-openmx): Update to 2.19.8.
2021-09-30 12:39:41 +02:00
Ricardo Wurmus b3f565fe75
gnu: r-proxyc: Update to 0.2.1.
* gnu/packages/cran.scm (r-proxyc): Update to 0.2.1.
2021-09-30 12:39:41 +02:00
Ricardo Wurmus 21b1fd2b7f
gnu: r-influencer: Update to 0.1.0.1.
* gnu/packages/cran.scm (r-influencer): Update to 0.1.0.1.
2021-09-30 12:39:41 +02:00
Ricardo Wurmus 37b5ddc05c
gnu: r-lhs: Update to 1.1.3.
* gnu/packages/cran.scm (r-lhs): Update to 1.1.3.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus 57a4d34e17
gnu: r-desolve: Update to 1.29.
* gnu/packages/cran.scm (r-desolve): Update to 1.29.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus 4a04eef784
gnu: r-lifecycle: Update to 1.0.1.
* gnu/packages/cran.scm (r-lifecycle): Update to 1.0.1.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus 29f3758be7
gnu: r-rgdal: Update to 1.5-27.
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-27.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus 62738c5b76
gnu: r-rhpcblasctl: Update to 0.21-247.
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.21-247.
2021-09-30 12:39:40 +02:00
Ricardo Wurmus fcd7092675
gnu: r-dae: Update to 3.2-11.
* gnu/packages/cran.scm (r-dae): Update to 3.2-11.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus 36188dad35
gnu: r-styler: Update to 1.6.2.
* gnu/packages/cran.scm (r-styler): Update to 1.6.2.
[propagated-inputs]: Add r-glue.
[arguments]: Set HOME variable.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus 84816b5633
gnu: r-float: Update to 0.2-6.
* gnu/packages/cran.scm (r-float): Update to 0.2-6.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus c7a427d966
gnu: r-arrow: Update to 5.0.0.2.
* gnu/packages/cran.scm (r-arrow): Update to 5.0.0.2.
[propagated-inputs]: Remove r-cpp11.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus 122500fea8
gnu: r-aplot: Update to 0.1.1.
* gnu/packages/cran.scm (r-aplot): Update to 0.1.1.
[propagated-inputs]: Add r-ggfun, r-ggplotify, and r-yulab-utils.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus 9bc8b1d950
gnu: r-ggfun: Update to 0.0.4.
* gnu/packages/cran.scm (r-ggfun): Update to 0.0.4.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus eba0e1428f
gnu: r-europepmc: Update to 0.4.1.
* gnu/packages/cran.scm (r-europepmc): Update to 0.4.1.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus 9c620bdabf
gnu: r-ggplotify: Update to 0.1.0.
* gnu/packages/cran.scm (r-ggplotify): Update to 0.1.0.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus b9a4d9e4d1
gnu: r-rjava: Update to 1.0-5.
* gnu/packages/cran.scm (r-rjava): Update to 1.0-5.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus ac19d3fcc9
gnu: r-bookdown: Update to 0.24.
* gnu/packages/cran.scm (r-bookdown): Update to 0.24.
2021-09-30 12:39:39 +02:00
Ricardo Wurmus 9319c78dab
gnu: r-ibdreg: Update to 0.3.6.
* gnu/packages/cran.scm (r-ibdreg): Update to 0.3.6.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus db39f61b3e
gnu: r-bqtl: Update to 1.0-33.
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-33.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus 4e64840930
gnu: r-haplo-stats: Update to 1.8.7.
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.7.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus a7bfaaaaa0
gnu: r-spdep: Update to 1.1-11.
* gnu/packages/cran.scm (r-spdep): Update to 1.1-11.
[propagated-inputs]: Add r-e1071, r-s2, and r-units.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus deae517a7d
gnu: r-blockmodeling: Update to 1.0.5.
* gnu/packages/cran.scm (r-blockmodeling): Update to 1.0.5.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus 21f25071d9
gnu: r-future: Update to 1.22.1.
* gnu/packages/cran.scm (r-future): Update to 1.22.1.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus 84881e5631
gnu: r-parallelly: Update to 1.28.1.
* gnu/packages/cran.scm (r-parallelly): Update to 1.28.1.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus 5e289e865c
gnu: r-protviz: Update to 0.7.0.
* gnu/packages/cran.scm (r-protviz): Update to 0.7.0.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus 73a4dc7dff
gnu: r-corpcor: Update to 1.6.10.
* gnu/packages/cran.scm (r-corpcor): Update to 1.6.10.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus cc08de840e
gnu: r-rvcheck: Update to 0.2.0.
* gnu/packages/cran.scm (r-rvcheck): Update to 0.2.0.
[propagated-inputs]: Remove r-rlang; add r-yulab-utils.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus 2cf818ff20
gnu: r-tidytree: Update to 0.3.5.
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.5.
[propagated-inputs]: Add r-tidyr and r-tidyselect.
2021-09-30 12:39:38 +02:00
Ricardo Wurmus 33bc213ff5
gnu: r-gsl: Update to 2.1-7.
* gnu/packages/cran.scm (r-gsl): Update to 2.1-7.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 4de502de41
gnu: r-gert: Update to 1.4.1.
* gnu/packages/cran.scm (r-gert): Update to 1.4.1.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 761801d8b9
gnu: r-bayestestr: Update to 0.11.0.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.11.0.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 2e19022971
gnu: r-glmmtmb: Update to 1.1.2.3.
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.2.3.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 4425c18984
gnu: r-tmb: Update to 1.7.21.
* gnu/packages/cran.scm (r-tmb): Update to 1.7.21.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus c3edeb93e4
gnu: r-proc: Update to 1.18.0.
* gnu/packages/cran.scm (r-proc): Update to 1.18.0.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 155ab08dfd
gnu: r-argparse: Update to 2.1.1.
* gnu/packages/cran.scm (r-argparse): Update to 2.1.1.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 57448d5b40
gnu: r-flextable: Update to 0.6.8.
* gnu/packages/cran.scm (r-flextable): Update to 0.6.8.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 1a80f1e042
gnu: r-insight: Update to 0.14.4.
* gnu/packages/cran.scm (r-insight): Update to 0.14.4.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 3dc6b529ac
gnu: r-officer: Update to 0.4.0.
* gnu/packages/cran.scm (r-officer): Update to 0.4.0.
2021-09-30 12:39:37 +02:00
Ricardo Wurmus 0b8790d831
gnu: r-rjags: Update to 4-11.
* gnu/packages/cran.scm (r-rjags): Update to 4-11.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus eae263e943
gnu: r-hdf5r: Update to 1.3.4.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.4.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus af0f83edb0
gnu: r-ggsignif: Update to 0.6.3.
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.3.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus eb49529221
gnu: r-reticulate: Update to 1.22.
* gnu/packages/cran.scm (r-reticulate): Update to 1.22.
[propagated-inputs]: Add r-here.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus 49e109eedf
gnu: r-maptools: Update to 1.1-2.
* gnu/packages/cran.scm (r-maptools): Update to 1.1-2.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus efdeab065a
gnu: r-pillar: Update to 1.6.3.
* gnu/packages/cran.scm (r-pillar): Update to 1.6.3.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus 5ca08b73a1
gnu: r-xfun: Update to 0.26.
* gnu/packages/cran.scm (r-xfun): Update to 0.26.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus a6096ad2ef
gnu: r-sm: Update to 2.2-5.7.
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.7.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus 06e96008d1
gnu: r-mitml: Update to 0.4-2.
* gnu/packages/cran.scm (r-mitml): Update to 0.4-2.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus cdce168838
gnu: r-stringdist: Update to 0.9.8.
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.8.
2021-09-30 12:39:36 +02:00
Ricardo Wurmus 592bd1dd64
gnu: r-psych: Update to 2.1.9.
* gnu/packages/cran.scm (r-psych): Update to 2.1.9.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus c638dcda0f
gnu: r-ipred: Update to 0.9-12.
* gnu/packages/cran.scm (r-ipred): Update to 0.9-12.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus 62f381dde4
gnu: r-lava: Update to 1.6.10.
* gnu/packages/cran.scm (r-lava): Update to 1.6.10.
[propagated-inputs]: Add r-future-apply and r-progressr.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus 7c1d00892a
gnu: r-pkgload: Update to 1.2.2.
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.2.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus fd66fd540a
gnu: r-pls: Update to 2.8-0.
* gnu/packages/cran.scm (r-pls): Update to 2.8-0.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus 439ae104bd
gnu: r-partykit: Update to 1.2-15.
* gnu/packages/cran.scm (r-partykit): Update to 1.2-15.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus f3f4056f7b
gnu: r-maps: Update to 3.4.0.
* gnu/packages/cran.scm (r-maps): Update to 3.4.0.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus fbc9e7c760
gnu: r-htmlwidgets: Update to 1.5.4.
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.4.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus 63e604a449
gnu: r-htmltools: Update to 0.5.2.
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.2.
[propagated-inputs]: Add r-fastmap.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus 4219dc4b9f
gnu: r-httpuv: Update to 1.6.3.
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.3.
2021-09-30 12:39:35 +02:00
Ricardo Wurmus 240d757840
gnu: r-shadowtext: Update to 0.0.9.
* gnu/packages/cran.scm (r-shadowtext): Update to 0.0.9.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus 18c6cdcee5
gnu: r-gprofiler2: Update to 0.2.1.
* gnu/packages/cran.scm (r-gprofiler2): Update to 0.2.1.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus a783b5d3b8
gnu: r-ggpmisc: Update to 0.4.3.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.3.
[propagated-inputs]: Add r-lmodel2.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus 7109d71653
gnu: r-rticles: Update to 0.21.
* gnu/packages/cran.scm (r-rticles): Update to 0.21.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus a5f6980cde
gnu: r-waldo: Update to 0.3.1.
* gnu/packages/cran.scm (r-waldo): Update to 0.3.1.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus 06187b3b72
gnu: r-datawizard: Update to 0.2.0.1.
* gnu/packages/cran.scm (r-datawizard): Update to 0.2.0.1.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus 81642f99cf
gnu: Add r-paws-end-user-computing.
* gnu/packages/cran.scm (r-paws-end-user-computing): New variable.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus 506436fde8
gnu: Add r-paws-developer-tools.
* gnu/packages/cran.scm (r-paws-developer-tools): New variable.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus 7aed4f72b0
gnu: Add r-here.
* gnu/packages/cran.scm (r-here): New variable.
2021-09-30 12:39:34 +02:00
Ricardo Wurmus 15dc56b0dd
gnu: Add r-progressr.
* gnu/packages/cran.scm (r-progressr): New variable.
2021-09-30 12:39:33 +02:00
Ricardo Wurmus f9762c907a
gnu: Add r-lmodel2.
* gnu/packages/cran.scm (r-lmodel2): New variable.
2021-09-30 12:39:33 +02:00
Ricardo Wurmus 68fa5c6a6e
gnu: r-bslib: Update to 0.3.0.
* gnu/packages/cran.scm (r-bslib): Update to 0.3.0.
[source]: Delete new minified JavaScript file.
[arguments]: Update minification code.
[native-inputs]: Update source file for Bootstrap 4; add source file for
Bootstrap 5.
[propagated-inputs]: Remove r-magrittr.
2021-09-30 12:39:33 +02:00
Ricardo Wurmus e370108436
gnu: r-dt: Update to 0.19.
* gnu/packages/statistics.scm (r-dt): Update to 0.19.
[source]: Remove minified JavaScript in a snippet.
[arguments]: Minify JavaScript inputs.
[propagated-inputs]: Add r-jquerylib.
[inputs]: Add js-selectize.
[native-inputs]: Add uglifyjs, datatables-plugins, js-nouislider, and all
JavaScript source files.
[licenses]: Remove asl2.0 from the list because selectize is no longer
included.
2021-09-30 12:39:29 +02:00
Tobias Geerinckx-Rice 22e97e5ac8
gnu: sbcl-hunchenissr: Fix typo in description.
* gnu/packages/lisp-xyz.scm (sbcl-hunchenissr): Fix ‘develpment’ typo.
2021-09-30 07:09:56 +02:00
Tobias Geerinckx-Rice 4b07b91a87
gnu: sbcl-markup-reader: Fix typo in description.
* gnu/packages/lisp-xyz.scm (sbcl-markup-reader)[description]:
Fix ‘embeded’ typo.
2021-09-30 07:09:56 +02:00
Tobias Geerinckx-Rice 7a02f68bf3
gnu: python-w3lib: Fix typo in description.
* gnu/packages/python-web.scm (python-w3lib)[description]:
Fix ‘entites’ typo and wrap to 80 characters.
2021-09-30 07:09:55 +02:00
Tobias Geerinckx-Rice e4629a68bf
gnu: abjad-ext-rmakers: Fix typo in synopsis.
* gnu/packages/music.scm (abjad-ext-rmakers)[synopsis]:
Fix ‘exension’ typo.
2021-09-30 07:09:55 +02:00
Ricardo Wurmus 3ee0b3ca56
gnu: python2-pandas: Fix build by reverting inherited fields.
* gnu/packages/python-science.scm (python2-pandas)[arguments]: Do not inherit
field; revert to values at commit c0d43f6223.
[propagated-inputs]: Do not inherit.
[inputs]: Same.
[native-inputs]: Same.
2021-09-29 23:43:32 +02:00
Ricardo Wurmus aa4885b3fb
gnu: python2-pytest-mock: Downgrade to 1.10.1.
* gnu/packages/check.scm (python2-pytest-mock)[propagated-inputs]: Only use
python2-mock and python2-pytest.
[version]: Downgrade to 1.10.1.
2021-09-29 23:43:32 +02:00
Tobias Geerinckx-Rice bc5152a25d
gnu: dehydrated: Update description.
* gnu/packages/tls.scm (dehydrated)[synopsis, description]:
Let's Encrypt hasn't been the only game in ACME town in ages.
2021-09-29 16:56:40 +02:00
Tobias Geerinckx-Rice f213df3127
gnu: exim: Don't return #t from phases.
* gnu/packages/mail.scm (exim)[arguments]: Don't explicitly return #t from phases.
2021-09-29 16:56:40 +02:00
Tobias Geerinckx-Rice 6e488fb069
gnu: exim: Prepare for cross-compilation.
* gnu/packages/mail.scm (exim)[arguments]: Use CC-FOR-TARGET.
2021-09-29 16:56:40 +02:00
Tobias Geerinckx-Rice db686f0b34
gnu: exim: Update to 4.95.
* gnu/packages/mail.scm (exim): Update to 4.95.
2021-09-29 16:56:40 +02:00
Tobias Geerinckx-Rice baa6c39f8a
gnu: ocaml-dune-build-info: Fix typo in description.
* gnu/packages/ocaml.scm (ocaml-dune-build-info)[description]:
Fix ‘informations’ typo.
2021-09-29 16:56:40 +02:00
Tobias Geerinckx-Rice 7092ca77d0
gnu: parinfer-rust: Fix typos in description.
* gnu/packages/text-editors.scm (parinfer-rust)[synopsis, description]:
Fix two different ways to mistype ‘parentheses’.
2021-09-29 16:56:39 +02:00
Tobias Geerinckx-Rice 339b96bdc5
gnu: trytond-stock-forecast: Fix typo in description.
* gnu/packages/tryton.scm (trytond-stock-forecast)[description]:
Fix ‘mecanisms’ typo.
2021-09-29 16:56:39 +02:00
Tobias Geerinckx-Rice ae6e09ad47
gnu: rust-dbus: Fix typo in description.
* gnu/packages/crates-io.scm (rust-dbus-0.9)[description]: Fix ‘provies’
typo.
2021-09-29 16:56:39 +02:00
Tobias Geerinckx-Rice 2f249e4c57
gnu: texlive-latex-l3packages: Fix typo in description.
* gnu/packages/tex.scm (texlive-latex-l3packages)[description]:
Delete stray hyphen.
2021-09-29 16:56:39 +02:00
Efraim Flashner e0bbe763a3
gnu: vifm: Update to 0.12.
* gnu/packages/vim.scm (vifm): Update to 0.12.
2021-09-29 17:29:29 +03:00
Nicolas Goaziou 79771bd2bb
gnu: mame: Update to 0.236.
* gnu/packages/emulators.scm (mame): Update to 0.236.
2021-09-29 15:58:56 +02:00
Nicolas Goaziou 324de089cb
gnu: emacs-modus-themes: Update to 1.6.0.
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 1.6.0.
2021-09-29 15:22:27 +02:00
Nicolas Goaziou a081f18e14
gnu: emacs-map: Update to 3.2.1.
* gnu/packages/emacs-xyz.scm (emacs-map): Update to 3.2.1.
2021-09-29 15:21:10 +02:00
Ricardo Wurmus 53611ab5c5
gnu: pigx-chipseq: Update to 0.0.53.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.53.
[inputs]: Add r-hexbin.
2021-09-29 09:58:45 +02:00
Maxim Cournoyer 34cf1f451e
gnu: Add python-pytest-csv.
* gnu/packages/python-check.scm (python-pytest-csv): New variable.
2021-09-28 22:25:39 -04:00
Maxim Cournoyer cf2b021e60
gnu: python-pytest-6: Fix version string in metadata.
The PKG-INFO file generated previously would have '0.0.0' as the version
string, causing problems in other packages specifying requirements such as
'pytest>=6'.

* gnu/packages/check.scm (python-pytest-6)[phases]{fix-version}: New phase.
2021-09-28 22:11:19 -04:00
Tobias Geerinckx-Rice b44bf31aa9
gnu: crm114: Fix typo in description.
* gnu/packages/mail.scm (crm114): Fix ‘correllation’ typo.
2021-09-28 22:00:48 +02:00
Tobias Geerinckx-Rice 708fe49523
gnu: r-simplifyenrichment: Fix typo in description.
* gnu/packages/bioconductor.scm (r-simplifyenrichment)[description]:
Fix ‘implemeted’ typo.
2021-09-28 22:00:48 +02:00
phodina via Guix-patches via 87178ed29e
gnu: Add falltergeist.
* gnu/packages/games.scm (falltergeist): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-09-28 21:39:48 +02:00
phodina via Guix-patches via f9ed753c7b
gnu: Add sdlpop.
* gnu/packages/games.scm (sdlpop): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-09-28 21:33:43 +02:00
Xinglu Chen 3444291e5c
gnu: Add emacs-bing-dict.
* gnu/packages/emacs-xyz.scm (emacs-bing-dict): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-09-28 21:29:55 +02:00
Xinglu Chen b900284965
gnu: Add emacs-eterm-256color.
* gnu/packages/emacs-xyz.scm (emacs-eterm-256color): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-09-28 21:28:56 +02:00
Nicolas Goaziou 982bceb860
gnu: emacs-julia-snail: Update to 1.1.4.
* gnu/packages/emacs-xyz.scm (emacs-julia-snail): Update to 1.1.4.
2021-09-28 21:23:34 +02:00
Nicolas Goaziou 9be6c28dcb
gnu: emacs-parseclj: Update to 1.0.2.
* gnu/packages/emacs-xyz.scm (emacs-parseclj): Update to 1.0.2.
2021-09-28 21:21:16 +02:00
Nicolas Goaziou e563dd6929
gnu: emacs-evil-matchit: Update to 2.4.1.
* gnu/packages/emacs-xyz.scm (emacs-evil-matchit): Update to 2.4.1.
2021-09-28 21:19:39 +02:00