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62689 Commits (fd247542215fbd10f28980f3d5255014b150e95a)

Author SHA1 Message Date
Ludovic Courtès d8051557ae
Revert "services: openssh: Warn about 'password-authentication?' default."
This reverts commit aecd2a13cb for two
reasons:

  1. The warning would fire every time (gnu services ssh) is loaded;

  2. There's still no clear consensus on the approach to follow as
     discussed in <https://issues.guix.gnu.org/44808>.
2020-12-11 19:06:53 +01:00
Mathieu Othacehe edc2acb779
gnu: guile-simple-zmq: Update to 0.0.0-5.f8b7d81.
* gnu/packages/guile-xyz.scm (guile-simple-zmq): Update to 0.0.0-5.f8b7d81.
2020-12-11 17:53:21 +01:00
Zhu Zihao 91e35e32a4
gnu: fcitx5-chinese-addons: Remove stale build steps.
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons)[arguments]
<configure-flags>: Remove it.
<phases>: Remove phase 'patch-install-prefix'.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-11 21:21:51 +08:00
Zhu Zihao 2639a99cf3
gnu: fcitx5-lua: Remove stale build steps.
* gnu/packages/fcitx5.scm (fcitx-lua)[arguments]: Remove it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-12-11 21:19:25 +08:00
Efraim Flashner f769ad12f1
gnu: toybox: Cross compile.
* gnu/packages/busybox.scm (toybox)[arguments]: Use cc-for-target.
2020-12-11 12:17:51 +02:00
Efraim Flashner 8f330aebee
gnu: busybox: Update to 1.32.0.
* gnu/packages/busybox.scm (busybox): Update to 1.32.0.
[source]: Remove patch.
* gnu/packates/patches/busybox-1.31.1-fix-build-with-glibc-2.31.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-12-11 12:04:37 +02:00
Brett Gilio f765577dec
gnu: Add emacs-webpaste.
* gnu/packages/emacs-xyz.com (emacs-webpaste): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-12-11 13:00:54 +05:30
Kyle Meyer 72e3614666
gnu: emacs-elpher: Mention gemini in synopsis and description.
* gnu/packages/emacs-xyz.scm (emacs-elpher)[synopsis, description]: Mention
gemini support to help those searching for gemini clients.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-12-11 12:01:30 +05:30
Nicolò Balzarotti f3bfeef540
gnu: Add emacs-smart-hungry-delete.
* gnu/packages/emacs-xyz.scm (emacs-smart-hungry-delete): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-12-11 11:52:04 +05:30
Mark Meyer e530fb4128
gnu: Add virtaal.
* gnu/packages/text-editors.scm (virtaal): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-12-11 11:28:40 +05:30
Marius Bakke 73817f711b
gnu: qoauth: Fix wrong URL in comment.
* gnu/packages/web.scm (qoauth)[arguments]: Adjust comment.
2020-12-10 23:48:42 +01:00
Christopher Baines 77667e2e63
gnu: guile-prometheus: Update to 0-5.35dc26c.
* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-5.35dc26c.
2020-12-10 19:58:14 +00:00
Tobias Geerinckx-Rice 6409843708
gnu: nfs-utils: Fix location of external util-linux binaries.
Fixes:

  ~ λ sudo mount -t nfs 1.2.3.4:/ /mnt
  /gnu/store/aaa-nfs-utils-2.4.3/sbin/start-statd: line 10:
  /gnu/store/bbb-util-linux-2.35.1-lib/bin/flock: No such file or directory
  mount.nfs: rpc.statd is not running but is required for remote locking.

* gnu/packages/nfs.scm (nfs-utils)[inputs]: Point the util-linux label at
util-linux:out and add util-linux:lib as a separate input.
2020-12-10 17:01:31 +01:00
Ryan Prior d4e3527f78
gnu: visidata: Update to 2.1.
* gnu/packages/visidata.scm (visidata): Update to 2.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-10 16:40:24 +02:00
Niklas Eklund 3138e4a75b
gnu: stumpwm-with-slynk: Fix build error.
* gnu/packages/wm.scm (stumpwm-with-slynk)[arguments]: Provide a
writable directory to use as $HOME during building.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-10 16:38:30 +02:00
divoplade 793713dc3f
gnu: exim: Enable authenticators.
* gnu/packages/mail.scm (exim)[arguments]: Enable cram_md5, dovecot, external,
plaintext, spa and tls authenticators in configure phase.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-12-10 20:05:27 +05:30
Efraim Flashner 8e344e3677
gnu: singularity: Update command substitutions.
Reported by Hao Chen <hchen@uthsc.edu>.

* gnu/packages/linux.scm (singularity)[arguments]: Update
'patch-references phase to actually patch mksquashfs calls and to patch
sed calls.
2020-12-10 14:22:57 +02:00
Christopher Baines 3fdb01f1f5
gnu: guile-prometheus: Update to 0-4.f661edf.
* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-4.f661edf.
2020-12-10 09:28:25 +00:00
Michael Rohleder 71dd1be597
gnu: emacs-lsp-ivy: Update to 0.4.
* gnu/packages/emacs-xyz.scm (emacs-lsp-ivy): Update to 0.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-10 08:31:00 +01:00
Michael Rohleder 38b05e7d30
gnu: emacs-company-emoji: Update to 2.6.0.
* gnu/packages/emacs-xyz.scm (emacs-company-emoji): Update to 2.6.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-10 08:29:37 +01:00
Morgan Smith ef24052f88
gnu: Add emacs-org-pretty-table.
* gnu/packages/emacs-xyz.scm (emacs-org-pretty-table): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-10 08:28:16 +01:00
Michael Rohleder 1781d35364
gnu: emacs-dash-docs: Update to 1.4.0-2.dafc8fc.
* gnu/packages/emacs-xyz.scm (emacs-dash-docs): Update to 1.4.0-2.dafc8fc.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-10 08:25:27 +01:00
Nicolas Goaziou 11456ba8d7
gnu: emacs-chess: Update to 2.0.5.
* gnu/packages/emacs-xyz.scm (emacs-chess): Update to 2.0.5.
2020-12-10 08:23:33 +01:00
Leo Famulari ec2eccbf3d
gnu: Remove python-llfuse-0.41.
* gnu/packages/python-xyz.scm (python-llfuse-0.41): Remove variable.
2020-12-09 18:18:26 -05:00
Leo Famulari 15c4e135a7
gnu: Remove Attic.
This package was superseded by Borg in 2016, and hasn't built
successfully for a while.

* gnu/packages/backup.scm (attic): Remove variable.
2020-12-09 18:18:22 -05:00
Ricardo Wurmus 48f77ecbb1
gnu: r-keggrest: Update to 1.30.1.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.30.1.
2020-12-09 23:30:12 +01:00
Ricardo Wurmus 4745f0dfca
gnu: r-genomeinfodb: Update to 1.26.2.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.2.
2020-12-09 23:30:12 +01:00
Ricardo Wurmus baeaa02e75
gnu: r-biocstyle: Update to 2.18.1.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.1.
2020-12-09 23:30:12 +01:00
Ricardo Wurmus 3872153a2f
gnu: r-scuttle: Update to 1.0.3.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.3.
[propagated-inputs]: Add r-genomicranges.
2020-12-09 23:30:12 +01:00
Ricardo Wurmus eed728951c
gnu: r-beachmat: Update to 2.6.2.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.2.
2020-12-09 23:30:12 +01:00
Ricardo Wurmus 589ac42212
gnu: r-cicero: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.1.
2020-12-09 23:30:12 +01:00
Ricardo Wurmus 7cda2d415f
gnu: r-biosigner: Update to 1.18.2.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
2020-12-09 23:30:12 +01:00
Ricardo Wurmus 4714787793
gnu: r-biocneighbors: Update to 1.8.2.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2.
[propagated-inputs]: Remove r-rcppannoy.
2020-12-09 23:30:12 +01:00
Ricardo Wurmus 52e14cb798
gnu: r-lubridate: Update to 1.7.9.2.
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.9.2.
2020-12-09 22:03:39 +01:00
Ricardo Wurmus d0c7b9f718
gnu: r-lme4: Update to 1.1-26.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-26.
2020-12-09 22:03:39 +01:00
Ricardo Wurmus d6d2984869
gnu: r-fpc: Update to 2.2-9.
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-9.
2020-12-09 22:03:39 +01:00
Ricardo Wurmus 61d24175b6
gnu: r-mclust: Update to 5.4.7.
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.7.
2020-12-09 22:03:39 +01:00
Ricardo Wurmus 31a6a60576
gnu: r-gplots: Update to 3.1.1.
* gnu/packages/statistics.scm (r-gplots): Update to 3.1.1.
2020-12-09 22:03:39 +01:00
Ricardo Wurmus 3ffc5515db
gnu: r-hmisc: Update to 4.4-2.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-2.
2020-12-09 22:03:39 +01:00
Ricardo Wurmus 5d0ccf888f
gnu: r-rprojroot: Update to 2.0.2.
* gnu/packages/statistics.scm (r-rprojroot): Update to 2.0.2.
[propagated-inputs]: Remove r-backports.
[native-inputs]: Add r-knitr.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus da290237fb
gnu: r-rcpparmadillo: Update to 0.10.1.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.1.2.0.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus 48af6aa1cb
gnu: r-rstudioapi: Update to 0.13.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.13.
[native-inputs]: Add r-knitr.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus e4ce58424e
gnu: r-backports: Update to 1.2.0.
* gnu/packages/statistics.scm (r-backports): Update to 1.2.0.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus aed99e0c7d
gnu: r-data-table: Update to 1.13.4.
* gnu/packages/statistics.scm (r-data-table): Update to 1.13.4.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus 348c21eafc
gnu: r-dbplyr: Update to 2.0.0.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.0.0.
[propagated-inputs]: Add r-withr.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus 0bc87a5282
gnu: r-rlang: Update to 0.4.9.
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.9.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus ff34dbb542
gnu: r-testthat: Update to 3.0.0.
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.0.
[propagated-inputs]: Add r-brio, r-callr, r-desc, r-jsonlite, r-lifecycle,
r-processx, r-ps, and r-waldo.
[native-inputs]: Add r-knitr.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus 59771643de
gnu: r-codetools: Update to 0.2-18.
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-18.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus 1f2ceaccf1
gnu: r-diversitree: Update to 0.9-15.
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-15.
2020-12-09 22:03:38 +01:00
Ricardo Wurmus 48504a231a
gnu: r-tidymodels: Update to 0.1.2.
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.2.
[propagated-inputs]: Remove r-crayon.
2020-12-09 22:03:38 +01:00