e0c6ecf2fc
gnu: r-rdpack: Update to 2.1.
...
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.
2020-12-09 22:03:31 +01:00
bc08f4f41e
gnu: r-rbibutils: Update to 2.0.
...
* gnu/packages/cran.scm (r-rbibutils): Update to 2.0.
[propagated-inputs]: Remove r-xml2.
2020-12-09 22:03:31 +01:00
df6c02d688
gnu: r-renv: Update to 0.12.3.
...
* gnu/packages/cran.scm (r-renv): Update to 0.12.3.
2020-12-09 22:03:31 +01:00
964d8a8494
gnu: r-radiant-data: Update to 1.3.12.
...
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.12.
2020-12-09 22:03:31 +01:00
e836f28835
gnu: r-tseries: Update to 0.10-48.
...
* gnu/packages/cran.scm (r-tseries): Update to 0.10-48.
2020-12-09 22:03:31 +01:00
114a0fb5a5
gnu: r-quantmod: Update to 0.4.18.
...
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.18.
2020-12-09 22:03:31 +01:00
514848aebc
gnu: r-ifultools: Update to 2.0-22.
...
* gnu/packages/cran.scm (r-ifultools): Update to 2.0-22.
2020-12-09 22:03:31 +01:00
d2be197fa5
gnu: r-tinytex: Update to 0.27.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.27.
2020-12-09 22:03:31 +01:00
e0c8fc4623
gnu: r-pillar: Update to 1.4.7.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.4.7.
2020-12-09 22:03:30 +01:00
bb70fae499
gnu: r-vctrs: Update to 0.3.5.
...
* gnu/packages/cran.scm (r-vctrs): Update to 0.3.5.
2020-12-09 22:03:30 +01:00
d4e67f37de
gnu: r-processx: Update to 3.4.5.
...
* gnu/packages/cran.scm (r-processx): Update to 3.4.5.
2020-12-09 22:03:30 +01:00
86572c35c4
gnu: r-cli: Update to 2.2.0.
...
* gnu/packages/cran.scm (r-cli): Update to 2.2.0.
2020-12-09 22:03:30 +01:00
841c3edf3c
gnu: r-hardyweinberg: Update to 1.6.9.
...
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.9.
2020-12-09 22:03:30 +01:00
55a090deb4
gnu: r-mice: Update to 3.12.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.12.0.
[propagated-inputs]: Add r-cpp11 and r-rlang.
2020-12-09 22:03:30 +01:00
cfd8779b22
gnu: r-recipes: Update to 0.1.15.
...
* gnu/packages/cran.scm (r-recipes): Update to 0.1.15.
2020-12-09 22:03:30 +01:00
9597dc08b3
gnu: r-generics: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-generics): Update to 0.1.0.
2020-12-09 22:03:30 +01:00
1d8b53164e
gnu: r-lava: Update to 1.6.8.1.
...
* gnu/packages/cran.scm (r-lava): Update to 1.6.8.1.
2020-12-09 22:03:30 +01:00
54dd6ce673
gnu: r-fitdistrplus: Update to 1.1-3.
...
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-3.
2020-12-09 22:03:29 +01:00
89088dc1bb
gnu: r-inline: Update to 0.3.17.
...
* gnu/packages/cran.scm (r-inline): Update to 0.3.17.
2020-12-09 22:03:29 +01:00
882d699ff2
gnu: r-extremes: Update to 2.1.
...
* gnu/packages/cran.scm (r-extremes): Update to 2.1.
2020-12-09 22:03:29 +01:00
07cb317173
gnu: r-distillery: Update to 1.2.
...
* gnu/packages/cran.scm (r-distillery): Update to 1.2.
2020-12-09 22:03:29 +01:00
bd69b54a55
gnu: r-circlize: Update to 0.4.11.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.11.
2020-12-09 22:03:29 +01:00
b1ad80e284
gnu: r-ps: Update to 1.5.0.
...
* gnu/packages/cran.scm (r-ps): Update to 1.5.0.
2020-12-09 22:03:29 +01:00
327167bd50
gnu: r-colorspace: Update to 2.0-0.
...
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-0.
[native-inputs]: Add r-knitr.
2020-12-09 22:03:29 +01:00
0415a46fd9
gnu: r-shinyfiles: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.0.
2020-12-09 22:03:29 +01:00
2b1abb4f43
gnu: r-vegan: Update to 2.5-7.
...
* gnu/packages/cran.scm (r-vegan): Update to 2.5-7.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
2020-12-09 22:03:29 +01:00
9bf316fcaf
gnu: r-ggpmisc: Update to 0.3.7.
...
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.7.
2020-12-09 22:03:28 +01:00
17fa0953a8
gnu: r-ggalluvial: Update to 0.12.3.
...
* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.3.
2020-12-09 22:03:28 +01:00
d856813829
gnu: r-v8: Update to 3.4.0.
...
* gnu/packages/cran.scm (r-v8): Update to 3.4.0.
2020-12-09 22:03:28 +01:00
3e337d9bb7
gnu: r-rticles: Update to 0.17.
...
* gnu/packages/cran.scm (r-rticles): Update to 0.17.
2020-12-09 22:03:28 +01:00
00a275fbf4
gnu: r-magrittr: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-magrittr): Update to 2.0.1.
2020-12-09 22:03:28 +01:00
18ddbd474b
gnu: r-d3r: Update to 0.9.1.
...
* gnu/packages/cran.scm (r-d3r): Update to 0.9.1.
[arguments]: Use esbuild for minification.
[native-inputs]: Add source for D3 version 6; replace uglify-js with esbuild.
2020-12-09 22:03:28 +01:00
d106e3e7f6
gnu: Add r-projpred.
...
* gnu/packages/cran.scm (r-projpred): New variable.
2020-12-09 22:03:28 +01:00
fab49665bb
gnu: Add r-optimx.
...
* gnu/packages/cran.scm (r-optimx): New variable.
2020-12-09 22:03:28 +01:00
8d15940f3c
gnu: Add r-gamm4.
...
* gnu/packages/cran.scm (r-gamm4): New variable.
2020-12-09 22:03:28 +01:00
f0862a3578
gnu: Add r-fds.
...
* gnu/packages/cran.scm (r-fds): New variable.
2020-12-09 22:03:27 +01:00
6279d2b6dd
gnu: Add r-rainbow.
...
* gnu/packages/cran.scm (r-rainbow): New variable.
2020-12-09 22:03:27 +01:00
14caba7eeb
gnu: Add r-hdrcde.
...
* gnu/packages/cran.scm (r-hdrcde): New variable.
2020-12-09 22:03:27 +01:00
feb7c4f6ca
gnu: Add r-ash.
...
* gnu/packages/cran.scm (r-ash): New variable.
2020-12-09 22:03:27 +01:00
73545fde42
gnu: Add r-parallelly.
...
* gnu/packages/cran.scm (r-parallelly): New variable.
2020-12-09 22:03:27 +01:00
9c3f5b2fa0
gnu: Add r-gitcreds.
...
* gnu/packages/cran.scm (r-gitcreds): New variable.
2020-12-09 22:03:27 +01:00
71a732c35d
gnu: Add r-waldo.
...
* gnu/packages/cran.scm (r-waldo): New variable.
2020-12-09 22:03:27 +01:00
24cf213edb
gnu: Add r-diffobj.
...
* gnu/packages/cran.scm (r-diffobj): New variable.
2020-12-09 22:03:27 +01:00
bd5f751259
gnu: Add r-brio.
...
* gnu/packages/cran.scm (r-brio): New variable.
2020-12-09 22:03:26 +01:00
eaca440b65
gnu: python-llfuse: Update to 1.3.8.
...
* gnu/packages/python-xyz.scm (python-llfuse): Update to 1.3.8.
2020-12-09 15:41:25 -05:00
2a23e3f582
gnu: dealii: Update to 9.2.0.
...
* gnu/packages/maths.scm (dealii): Update to 9.2.0.
2020-12-09 13:42:05 -06:00
e36291ef52
gnu: Add r-restrserve.
...
* gnu/packages/cran.scm (r-restrserve): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09 19:33:35 +00:00
5f6a001933
gnu: Add kiwix-desktop.
...
* gnu/packages/web.scm (kiwix-desktop): New variable.
2020-12-09 18:25:32 +01:00
acbf47a067
gnu: Add kiwix-lib.
...
* gnu/packages/web.scm (kiwix-lib): New variable.
2020-12-09 18:25:32 +01:00
44308c8c5f
gnu: Add libzim.
...
* gnu/packages/web.scm (libzim): New variable.
2020-12-09 18:24:46 +01:00
a294eecd98
gnu: Add emacs-helm-switch-to-repl.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable.
2020-12-09 17:27:51 +01:00
5103459664
gnu: emacs-debbugs: Update to 0.27.
...
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27.
2020-12-09 14:54:27 +01:00
3d85c3ec65
gnu: pciutils: Fix compilation error on GNU/Hurd.
...
* gnu/packages/patches/pciutils-hurd-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pciutils.scm (pciutils)[arguments]: Add
'apply-hurd-patch' phase when (hurd-target?) is true.
[inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
2020-12-09 14:13:33 +01:00
f066e65713
services: guix-publish: Depend on 'avahi-daemon' when needed.
...
* gnu/services/base.scm (guix-publish-shepherd-service): Add
'user-processes' to 'requirement'. When ADVERTISE? is true, also add
'avahi-daemon'.
2020-12-09 14:13:32 +01:00
59a6780f70
services: avahi: Depend on 'user-processes'.
...
* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes'
to 'requirement'.
2020-12-09 14:13:32 +01:00
ebf11de4e3
gnu: r-diffbind: Update to 3.0.8.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
2020-12-09 12:12:48 +01:00
4617cc7fd5
gnu: r-rhtslib: Propagate zlib.
...
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
2020-12-09 12:12:48 +01:00
7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:48 +01:00
cde035e67f
gnu: r-gqtlstats: Update to 1.21.3.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3.
2020-12-09 12:12:48 +01:00
6a4818716d
gnu: r-gqtlbase: Update to 1.21.1.
...
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
2020-12-09 12:12:48 +01:00
64f9fb308f
gnu: r-bigmelon: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
2020-12-09 12:12:48 +01:00
9f6e2bfe1f
gnu: r-watermelon: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
2020-12-09 12:12:47 +01:00
8db36c1f68
gnu: r-yarn: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
2020-12-09 12:12:47 +01:00
adf6edc750
gnu: r-quantro: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
2020-12-09 12:12:47 +01:00
4eeaa159d2
gnu: r-lumi: Update to 2.42.0.
...
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
2020-12-09 12:12:47 +01:00
0b7dd44706
gnu: r-methylumi: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
2020-12-09 12:12:47 +01:00
e5a4198bc3
gnu: r-minfi: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
2020-12-09 12:12:47 +01:00
45dfb75166
gnu: Add r-catalyst.
...
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
2020-12-09 12:12:47 +01:00
43bf50ecae
gnu: r-ggcyto: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
2020-12-09 12:12:47 +01:00
b856a48768
gnu: r-scdd: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
2020-12-09 12:12:47 +01:00
3f04b8167b
gnu: r-chipcomp: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
2020-12-09 12:12:47 +01:00
1174317e03
gnu: r-pcatools: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
2020-12-09 12:12:47 +01:00
970984237a
gnu: r-biocviews: Update to 1.58.1.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.1.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
b03c955c6f
gnu: r-scran: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
d4b5d18684
gnu: r-scater: Update to 1.18.3.
...
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:46 +01:00
0e60dda0ae
gnu: Add r-scuttle.
...
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
2020-12-09 12:12:46 +01:00
10c87ecf77
gnu: r-delayedmatrixstats: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2020-12-09 12:12:46 +01:00
53affb349a
gnu: r-rhdf5: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.34.0.
[propagated-inputs]: Add r-rhdf5filters.
[arguments]: Avoid to have a plain directory on the list of libraries to
link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:46 +01:00
86fcceeae1
gnu: Add r-rhdf5filters.
...
* gnu/packages/bioinformatics.scm (r-rhdf5filters): New variable.
2020-12-09 12:12:46 +01:00
4ef898d449
gnu: r-singlecellexperiment: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
2020-12-09 12:12:46 +01:00
d0db04fcaf
gnu: r-yapsa: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
2020-12-09 12:12:46 +01:00
798ec28916
gnu: r-biocsingular: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
2020-12-09 12:12:46 +01:00
dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
2020-12-09 12:12:46 +01:00
35dae95110
gnu: r-interactionset: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
2020-12-09 12:12:46 +01:00
60ad3c7b3b
gnu: r-genomationdata: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.22.0.
2020-12-09 12:12:46 +01:00
5e719988f2
gnu: Add r-sparsematrixstats.
...
* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
2020-12-09 12:12:46 +01:00
a23310ffc2
gnu: Add r-bluster.
...
* gnu/packages/bioconductor.scm (r-bluster): New variable.
2020-12-09 12:12:45 +01:00
aca4ebe40a
gnu: r-annaffy: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
2020-12-09 12:12:45 +01:00
e707820442
gnu: r-sushi: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.28.0.
2020-12-09 12:12:45 +01:00
83129edfb7
gnu: r-gwascat: Update to 2.22.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.22.0.
[propagated-inputs]: Add r-biocfilecache, r-readr, r-snpstats, and
r-variantannotation; remove r-biocgenerics, r-ggplot2, r-rsamtools, and
r-rtracklayer.
2020-12-09 12:12:45 +01:00
717e53fdc0
gnu: r-gviz: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.34.0.
2020-12-09 12:12:45 +01:00
0a8d08e887
gnu: r-ldblock: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.20.0.
2020-12-09 12:12:45 +01:00
494010ad3e
gnu: r-erma: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.6.0.
2020-12-09 12:12:45 +01:00
6e338901bf
gnu: r-snpstats: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.40.0.
2020-12-09 12:12:45 +01:00
74a11b21be
gnu: r-ggbio: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.38.0.
2020-12-09 12:12:45 +01:00
3c6eecdeed
gnu: r-biovizbase: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.38.0.
2020-12-09 12:12:45 +01:00
6e182c237a
gnu: r-organismdbi: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.32.0.
2020-12-09 12:12:44 +01:00
06fe3b7a53
gnu: r-ensembldb: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.0.
2020-12-09 12:12:44 +01:00
8962a13afe
gnu: r-dirichletmultinomial: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.32.0.
2020-12-09 12:12:44 +01:00
4ef1e375b4
gnu: r-complexheatmap: Update to 2.6.2.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.6.2;
[propagated-inputs]: Add r-cairo, r-digest, r-iranges, r-matrixstats, and
r-s4vectors.
2020-12-09 12:12:44 +01:00
0fde2f9ad2
gnu: r-genomicfiles: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.26.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:44 +01:00
78cadd0fef
gnu: r-gage: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.0.
2020-12-09 12:12:44 +01:00
143437c623
gnu: r-keggrest: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.30.0.
2020-12-09 12:12:44 +01:00
b6dd0722c8
gnu: r-fastseg: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.36.0.
2020-12-09 12:12:44 +01:00
a9dc755e67
gnu: r-annotationhub: Update to 2.22.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.0.
2020-12-09 12:12:43 +01:00
3becce3ff3
gnu: r-interactivedisplaybase: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.28.0.
2020-12-09 12:12:43 +01:00
8e55b9f502
gnu: r-edaseq: Update to 2.24.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.24.0.
2020-12-09 12:12:43 +01:00
8db8a683b9
gnu: r-aroma-light: Update to 3.20.0.
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* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.20.0.
2020-12-09 12:12:43 +01:00
971f3a377c
gnu: r-msnid: Update to 1.24.0.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.24.0.
[propagated-inputs]: Add r-annotationdbi, r-annotationhub, r-biocgenerics,
r-biocstyle, r-biostrings, r-ggplot2, r-msmstests, r-purrr, r-rlang, r-runit,
r-stringr, r-tibble, and r-xtable.
2020-12-09 12:12:43 +01:00
16f16b5e21
gnu: Add r-msmstests.
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* gnu/packages/bioconductor.scm (r-msmstests): New variable.
2020-12-09 12:12:43 +01:00
e520c68fa9
gnu: Add r-msmseda.
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* gnu/packages/bioconductor.scm (r-msmseq): New variable.
2020-12-09 12:12:43 +01:00
2ed937e0aa
gnu: r-pcamethods: Update to 1.82.0.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.82.0.
2020-12-09 12:12:43 +01:00
b47560c1cf
gnu: r-mzid: Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.28.0.
[propagated-inputs]: Remove r-rcpp.
2020-12-09 12:12:43 +01:00
75bdab83cc
gnu: r-vsn: Update to 3.58.0.
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* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.58.0.
2020-12-09 12:12:42 +01:00
6a6f38b89e
gnu: r-affy: Update to 1.68.0.
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* gnu/packages/bioinformatics.scm (r-affy): Update to 1.68.0.
2020-12-09 12:12:42 +01:00
d6750c6587
gnu: r-affyio: Update to 1.60.0.
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* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.60.0.
2020-12-09 12:12:42 +01:00
471ceb5e5e
gnu: r-mzr: Fix linking.
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* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.
2020-12-09 12:12:42 +01:00
badb4678bd
gnu: r-mzr: Update to 2.24.1.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.24.1.
2020-12-09 12:12:42 +01:00
4d9e168db8
gnu: r-protgenerics: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.22.0.
2020-12-09 12:12:42 +01:00
858eb988a0
gnu: r-sva: Update to 3.38.0.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.38.0.
2020-12-09 12:12:42 +01:00
99bd4f2d7c
gnu: r-methylkit: Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.0.
2020-12-09 12:12:42 +01:00
2ed79a0a42
gnu: r-copywriter: Update to 2.22.0.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.22.0.
2020-12-09 12:12:41 +01:00
36fd725b6f
gnu: r-chipseq: Update to 1.40.0.
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* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.40.0.
2020-12-09 12:12:41 +01:00
cad3eb4eb4
gnu: r-annotationfilter: Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.14.0.
2020-12-09 12:12:41 +01:00
ec0050c0a9
gnu: r-tximport: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.18.0.
2020-12-09 12:12:41 +01:00
6d5a4dd0a7
gnu: r-mutationalpatterns: Update to 3.0.1.
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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
2020-12-09 12:12:41 +01:00
a823a74525
gnu: r-rcas: Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.16.0.
2020-12-09 12:12:41 +01:00
2c15a1c502
gnu: r-bamsignals: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.22.0.
2020-12-09 12:12:41 +01:00
728369634f
gnu: r-rhtslib: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.22.0.
2020-12-09 12:12:41 +01:00
b0d85e36f1
gnu: r-zlibbioc: Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.36.0.
2020-12-09 12:12:40 +01:00
329879b70c
gnu: r-seqlogo: Update to 1.56.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.56.0.
2020-12-09 12:12:40 +01:00
2a70c96e3d
gnu: r-genomation: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.22.0.
2020-12-09 12:12:40 +01:00
44bf116f03
gnu: r-seqpattern: Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.22.0.
2020-12-09 12:12:40 +01:00
a180744b37
gnu: r-impute: Update to 1.64.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.64.0.
2020-12-09 12:12:40 +01:00
e2e11f095f
gnu: r-bsgenome: Update to 1.58.0.
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* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.58.0.
2020-12-09 12:12:40 +01:00
6a7de43a58
gnu: r-topgo: Update to 2.42.0.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.42.0.
2020-12-09 12:12:40 +01:00
26e2184fc1
gnu: r-genomicfeatures: Update to 1.42.1.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.1.
2020-12-09 12:12:40 +01:00
92377e7fea
gnu: r-rtracklayer: Update to 1.50.0.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.50.0.
2020-12-09 12:12:39 +01:00
077e813657
gnu: r-genomicalignments: Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.26.0.
2020-12-09 12:12:39 +01:00
3ca5b05474
gnu: r-variantannotation: Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.36.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:39 +01:00
8607a5394b
gnu: r-summarizedexperiment: Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.20.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:39 +01:00
9168ab0911
gnu: r-rsamtools: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.6.0.
2020-12-09 12:12:39 +01:00
5d60273b77
gnu: r-biostrings: Update to 2.58.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.58.0.
2020-12-09 12:12:39 +01:00
444b101dc2
gnu: r-biocparallel: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.24.1.
2020-12-09 12:12:39 +01:00
4fac3fe67d
gnu: r-biomart: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.0.
2020-12-09 12:12:39 +01:00
f517365cef
gnu: r-annotationdbi: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.52.0.
2020-12-09 12:12:39 +01:00
9103041d13
gnu: r-biobase: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.50.0.
2020-12-09 12:12:38 +01:00
7641dba3e6
gnu: r-genomicranges: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.42.0.
2020-12-09 12:12:38 +01:00
d972ab690e
gnu: r-limma: Update to 3.46.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.46.0.
2020-12-09 12:12:38 +01:00
5996929b36
gnu: r-edger: Update to 3.32.0.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.0.
2020-12-09 12:12:38 +01:00
Ricardo Wurmus
Leo Famulari
Eric Bavier
Eric Brown
Pierre Neidhardt
Nicolas Goaziou
Ludovic Courtès
zimoun
Roel Janssen