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Author SHA1 Message Date
Ricardo Wurmus f82d20caae
gnu: r-ggcyto: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus 1c3750c9ea
gnu: r-ncdfflow: Update to 2.42.1.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
2022-10-03 19:08:08 +02:00
Ricardo Wurmus 23e42e77d4
gnu: r-rsubread: Update to 2.10.5.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus 597106f234
gnu: r-rgadem: Update to 2.44.1.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus 83f0c1a39d
gnu: r-enrichplot: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus 842431a036
gnu: r-dose: Update to 3.22.1.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus 2b4a7fa22e
gnu: r-residualmatrix: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus 1cb30ba714
gnu: r-ggtree: Update to 3.4.4.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus a047448aad
gnu: r-treeio: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus 41f029c12a
gnu: r-scaledmatrix: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.1.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus e581479be8
gnu: r-diffbind: Update to 3.6.4.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus 309cfcedca
gnu: r-zellkonverter: Update to 1.6.5.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus 039d894b9d
gnu: r-limma: Update to 3.52.4.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4.
2022-10-03 19:08:07 +02:00
Ricardo Wurmus a16c87fae1
gnu: r-genomicfeatures: Update to 1.48.4.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus a15ad5ebe3
gnu: r-genomeinfodb: Update to 1.32.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus ba6a3e7d39
gnu: r-gage: Update to 2.46.1.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus c82320aa21
gnu: r-complexheatmap: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus 038eeeaf2a
gnu: r-chipseeker: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1.
[propagated-inputs]: Add r-ggvenndiagram.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus 15243c2f84
gnu: r-biostrings: Update to 2.64.1.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus 29a947216c
gnu: r-annotationforge: Update to 1.38.1.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1.
2022-10-03 19:08:06 +02:00
Ricardo Wurmus 96b560ac8b
gnu: r-dearseq: Update to 1.8.4.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4.
2022-10-03 19:08:03 +02:00
Maxim Cournoyer 06201b76e5
gnu: Remove ocaml-craml.
The package doesn't build from source and is unmaintained according to its
maintainer:
https://github.com/realworldocaml/craml/pull/8#issuecomment-529235628.

* gnu/packages/ocaml.scm (ocaml-craml): Delete variable.
2022-10-03 11:16:15 -04:00
Maxim Cournoyer 67e9513e40
gnu: r-spams: Update to 2.6.1.
* gnu/packages/statistics.scm (r-spams): Update to 2.6.1.
[source]: Migrate from gforge.inria.fr to gitlab.inria.fr, fetching from git.
[phases]: Use gexps.
{patch-paths, mkdist}: New phases.
{no-mtune}: Delete trailing #t.
[native-inputs]: New field.
[home-page]: Update URL.
2022-10-03 11:16:15 -04:00
Maxim Cournoyer 1390e38264
gnu: ocaml-dose3: Migrate from gforce.inria.fr.
* gnu/packages/ocaml.scm (ocaml-dose3) [source]: Fetch from git from inill's gitlab
instance.
2022-10-03 11:16:15 -04:00
Maxim Cournoyer a93781b83c
gnu: Remove unused scotch patches.
* gnu/packages/patches/scotch-build-parallelism.patch: Delete file.
* gnu/packages/patches/scotch-integer-declarations.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
2022-10-03 11:16:15 -04:00
Maxim Cournoyer 8ad1978695
gnu: mpfi: Update to 1.5.4-1.b982534.
* gnu/packages/multiprecision.scm (mpfi): Update to 1.5.4-1.b982534.
[source]: Fetch from git and use latest commit available.
[tests?]: Delete argument, enabling test suite.
[phases]: New argument.
[native-inputs]: New field.
2022-10-03 11:16:15 -04:00
Maxim Cournoyer a001be9664
gnu: mpfi: Use gexps and remove input labels.
* gnu/packages/multiprecision.scm (mpfi) [source]: Re-indentation.
[configure-flags]: Use gexps.
[native-inputs]: Remove labels.
2022-10-03 11:16:15 -04:00
Maxim Cournoyer efb974a6fa
gnu: isl: Remove outdated comment.
* gnu/packages/gcc.scm (isl) [source]: Remove outdated comment.
2022-10-03 11:16:14 -04:00
Maxim Cournoyer 384b98028c
gnu: gappa: Honor TESTS?.
* gnu/packages/algebra.scm (gappa) [phases] {check}: Honor TESTS?.
2022-10-03 11:16:14 -04:00
Maxim Cournoyer 0f46559331
gnu: gappa: Update to 1.4.1.
* gnu/packages/algebra.scm (gappa): Update to 1.4.1.
[source]: Fetch from git.
[arguments]: Use gexps.
[phases]: Delete trailing #t.
[native-inputs]: New field.
2022-10-03 11:16:14 -04:00
Maxim Cournoyer bcc61c08be
gnu: gmp-ecm: Update to 7.0.5.
* gnu/packages/algebra.scm (gmp-ecm): Update to 7.0.5.
[source]: Fetch from git from gitlab.inria.fr.
[arguments]: Use gexps.
[phases] {patch-paths}: New phase
[native-inputs]: New field.
[home-page]: Update URL.
2022-10-03 11:16:14 -04:00
Maxim Cournoyer 795f90ea4e
gnu: gf2x: Update to 1.3.0.
* gnu/packages/algebra.scm (gf2x): Update to 1.3.0.
2022-10-03 11:16:13 -04:00
Maxim Cournoyer 2b08945cbb
gnu: gf2x: Migrate from gforge.inria.fr to gitlab.inria.fr.
* gnu/packages/algebra.scm (gf2x) [source]: Fetch from git, adjust URL.
[native-inputs]: Add autoconf, automake and libtool.
[home-site]: Update URL.
2022-10-03 11:16:13 -04:00
Michael Rohleder f64c80a538
gnu: emacs-ag: Do not propagate the-silver-searcher.
* gnu/packages/emacs-xyz.scm (emacs-ag)[phases]: Add phase substitute-ag-path
to avoid propagating ag.
[inputs]: Add the-silver-searcher.
[propagated-inputs]: Remove the-silver-searcher.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-03 10:26:42 +03:00
Michael Rohleder 3fbe68d9fc
gnu: emacs-ag: Use gexps.
* gnu/packages/emacs-xyz.scm (emacs-ag)[phases]: Use gexps.
{install-info}: Adjust for gexps.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-03 10:26:41 +03:00
Greg Hogan 582b1f626f
gnu: python-louvain: Fix test.
* gnu/packages/graph.scm (python-louvain)[source]: Add patch.
* gnu/packages/patches/python-louvain-fix-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:22:07 +02:00
Greg Hogan d1c3de6583
gnu: python-setools: Update to 4.4.0.
* gnu/packages/selinux.scm (python-setools): Update to 4.4.0.
[source, home-page]: Update url.
[inputs]: Add python-pyqt.
[native-inputs]: Add python-cython.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:58 +02:00
Greg Hogan 35c92a6324
gnu: python-cfn-lint: Update to 0.65.0.
* gnu/packages/python-web.scm (python-cfn-lint): Update to 0.65.0.
[arguments]<#:phases>: Add 'skip-network-test.
[propagated-inputs]: Add python-importlib-resources,
python-jschema-to-python, python-sarif-om.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:51 +02:00
Greg Hogan 56d8907c5f
gnu: Add python-sarif-om.
* gnu/packages/python-web.scm (python-sarif-om): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:47 +02:00
Greg Hogan dec74d4563
gnu: Add python-jschema-to-python.
* gnu/packages/python-web.scm (python-jschema-to-python): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:38 +02:00
Greg Hogan 2070ce84ec
gnu: python-aws-sam-translator: Update to 1.51.0.
* gnu/packages/python-web.scm (python-aws-sam-translator): Update to 1.51.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:34 +02:00
Greg Hogan 5440d6be78
gnu: python-networkx: Update to 2.8.6.
* gnu/packages/python-xyz.scm (python-networkx): Update to 2.8.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:21:29 +02:00
Wiktor Żelazny b479089fdc
gnu: Add texlive-generic-xstring.
* gnu/packages/tex.scm (texlive-generic-xstring): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:20:05 +02:00
Giovanni Biscuolo 69aa41e405
gnu: emacs-telega: Use tdlib-1.8.0
emacs-telega is compatible with the latest TDLib major release 1.8.0

* gnu/packages/emacs-xyz.scm: (emacs-telega) Use tdlib-1.8.0 instead of latest tdlib

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:18:43 +02:00
Giovanni Biscuolo abc232c42d
gnu: Add tdlib-1.8.0.
This is needed for emacs-telega 0.8.3

* gnu/packages/messaging.scm (tdlib-1.8.0): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:18:43 +02:00
Ludovic Courtès 782c7455e1
gnu: ffmpeg@4: Build against SDL2 2.0 so 'ffplay' gets built.
Fixes <https://issues.guix.gnu.org/58090>.
Reported by Zhu Zihao <all_but_last@163.com>.

* gnu/packages/sdl.scm (sdl2-2.0): New variable.
* gnu/packages/video.scm (ffmpeg-4)[inputs]: New field.
2022-10-02 23:18:42 +02:00
Michael Rohleder bb3b810167
gnu: emacs-scratch-el: Update source and homepage.
* gnu/packages/emacs-xyz.scm (emacs-scratch-el)[source, homepage]: Update URL.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:40:17 +03:00
Michael Rohleder 6fc185bc79
gnu: pantalaimon: Update to 0.10.5.
* gnu/packages/matrix.scm (pantalaimon): Update to 0.10.5.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:34:40 +03:00
Michael Rohleder d37f4f4ac7
gnu: python-matrix-nio: Update to 0.20.0.
* gnu/packages/matrix.scm (python-matrix-nio): Update to 0.20.0.
[native-inputs]: Add python-pytest-asyncio.
[propagated-inputs]: Changed python-jsonschema to python-jsonschema-next.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:34:38 +03:00
Michael Rohleder 357bd133d8
gnu: python-aiohttp-socks: Update to 0.7.1.
* gnu/packages/python-web.scm (python-aiohttp-socks): Update to 0.7.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:34:36 +03:00
Michael Rohleder 6448abe39a
gnu: python-socks: Update to 2.0.3.
* gnu/packages/python-web.scm (python-socks): Update to 2.0.3.
[arguments]<#:phases>: Remove trailing #t.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:34:30 +03:00
Hilton Chain 5bd048debf
gnu: Add go-1.19.
* gnu/packages/golang (go-1.19,go-std-1.19): New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:23:07 +03:00
Hilton Chain f44ba4a1ad
gnu: Add go-1.18.
* gnu/packages/golang (go-1.18,go-std-1.18): New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:22:53 +03:00
itd 2ac5da4b5a
gnu: Add ghc-9.0.
* gnu/packages/haskell.scm (ghc-9.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 15:16:18 +03:00
Fulbert ae22181374
gnu: csound: Update to 6.16.2.
* gnu/packages/audio.scm (csound): Update to 6.16.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 14:54:21 +03:00
Mike Swanson 77bcdb7439
gnu: units: Update to 2.22.
* gnu/packages/maths.scm (units): Update to 2.22.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 14:36:23 +03:00
ギャラ 1df3af9bdf
gnu: neovim: Update to 0.8.0.
* gnu/packages/vim.scm (neovim): Update to 0.8.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 14:31:45 +03:00
ギャラ 09e5f9e38e
gnu: libvterm: Update to 0.3.0.
* gnu/packages/terminals.scm (libvterm): Update to 0.3.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-10-02 14:31:41 +03:00
Marius Bakke 78176e3a81
gnu: ungoogled-chromium: Update to 106.0.5249.91-1.
* gnu/packages/chromium.scm (%chromium-version): Set to 106.0.5249.91.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2022-10-01 23:13:13 +02:00
Efraim Flashner 821cd5651a
gnu: exercism: Remove input labels.
* gnu/packages/education.scm (exercism)[inputs]: Remove input labels.
2022-10-01 23:48:02 +03:00
Efraim Flashner 04516a7adf
gnu: exercism: Update home-page.
* gnu/packages/education.scm (exercism)[home-page]: Follow redirect.
2022-10-01 23:47:06 +03:00
Efraim Flashner 4b5ac6b226
gnu: exercism: Install shell completions.
* gnu/packages/education.scm (exercism)[arguments]: Add a phase to build
and install shell completions.
2022-10-01 23:46:12 +03:00
Guillaume Le Vaillant 461b1e4909
gnu: nanovna-saver: Update to 0.5.3.
* gnu/packages/radio.scm (nanovna-saver): Update to 0.5.3.
2022-10-01 18:22:53 +02:00
Liliana Marie Prikler 4b3493ed01
gnu: komikku: Update to 1.0.0.
* gnu/packages/gnome.scm (komikku): Update to 1.0.0.
[arguments]<#:meson>: Use meson-0.63.
<#:phases>: Adjust ‘skip-gtk-update-icon-cache’
[inputs]: Replace gtk+ with gtk.
Replace libhandy with libadwaita.
Replace webkitgtk-with-libsoup2 with webkitgtk-next.
2022-10-01 18:10:01 +02:00
Liliana Marie Prikler 46e1eb48c9
gnu: komikku: Use G-Expressions.
* gnu/packages/gnome.scm (komikku)[arguments]: Convert to list of G-Expressions.
2022-10-01 18:10:01 +02:00
Liliana Marie Prikler 7f0ff90538
gnu: gfeeds: Update to 1.0.3.
* gnu/packages/syndication.scm (gfeeds): Update to 1.0.3.
[arguments]<#:phases>: Add ‘skip-icon-cache’.
[native-inputs]: Remove gtk+:bin.  Add blueprint-compiler.
[inputs]: Replace gtk+ with gtk.
Replace libhandy with libadwaita.
Replace python-readability with python-readability-lxml.
Replace webkitgtk with webkitgtk-next.
Add python-humanize, python-magic, python-pygobject, and
syndication-domination.
2022-10-01 18:10:01 +02:00
Liliana Marie Prikler 9619a31dc3
gnu: gfeeds: Modernize package description.
* gnu/packages/syndication.scm (gfeeds)[arguments]: Convert to list of
G-Expressions.  Drop trailing #t.
[native-inputs]: Drop labels.
[inputs]: Add bash-minimal.
2022-10-01 17:56:01 +02:00
Liliana Marie Prikler e90509b627
gnu: gfeeds: Use git origin.
* gnu/packages/syndication.scm (gfeeds)[origin]: Use git-fetch and
git-reference.
2022-10-01 17:56:00 +02:00
Liliana Marie Prikler 99af12e826
gnu: Add syndication-domination.
* gnu/packages/syndication.scm (syndication-domination): New variable.
2022-10-01 17:56:00 +02:00
Liliana Marie Prikler 7b7562d930
gnu: Add python-readability-lxml.
* gnu/packages/python-xyz.scm (python-readability-lxml): New variable.
2022-10-01 17:56:00 +02:00
Liliana Marie Prikler b6b09a93fd
gnu: Add python-timeout-decorator.
* gnu/packages/python-xyz.scm (python-timeout-decorator): New variable.
2022-10-01 17:56:00 +02:00
Liliana Marie Prikler 16be8d4e7b
gnu: pugixml: Update to 1.12.1.
* gnu/packages/xml.scm (pugixml): Update to 1.12.1.
2022-10-01 17:56:00 +02:00
Liliana Marie Prikler a70372b4aa
gnu: blueprint-compiler: Wrap GUIX_PYTHONPATH and GI_TYPELIB_PATH.
* gnu/packages/gnome.scm (blueprint-compiler)[arguments]: Add
python-build-system's wrap phase, as well as a phase for GI_TYPELIB_PATH.
2022-10-01 17:56:00 +02:00
Liliana Marie Prikler 95a216c4f0
gnu: libadwaita: Update to 1.2.0.
* gnu/packages/gnome.scm (libadwaita): Update to 1.2.0.
2022-10-01 17:56:00 +02:00
Liliana Marie Prikler b3d3012f11
gnu: webkitgtk: Update to 2.38.0.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.38.0.
2022-10-01 17:56:00 +02:00
Liliana Marie Prikler 85e7d3e83a
gnu: gtk: Update to 4.8.1.
* gnu/packages/gtk.scm (gtk): Update to 4.8.1.
2022-10-01 17:56:00 +02:00
Guillaume Le Vaillant 225e00bd19
gnu: monero-gui: Update to 0.18.1.2.
* gnu/packages/finance.scm (monero-gui): Update to 0.18.1.2.
2022-10-01 10:03:30 +02:00
Guillaume Le Vaillant 68d3ec6ad7
gnu: monero: Update to 0.18.1.2.
* gnu/packages/finance.scm (monero): Update to 0.18.1.2.
2022-10-01 09:32:10 +02:00
Ricardo Wurmus 1266b9ed11
gnu: salmon: Update to 1.9.0.
* gnu/packages/bioinformatics.scm (salmon): Update to 1.9.0.
[arguments]: Remove -DTBB_LIBRARIES from configure flags; copy pufferfish
itlib headers.
[inputs]: Use new label-less list; move pufferfish origin from here...
[native-inputs]: ...to here.
2022-09-30 22:43:21 +02:00
Ricardo Wurmus 729ce5fcf8
gnu: Add centrifuge.
* gnu/packages/bioinformatics.scm (centrifuge): New variable.
2022-09-30 16:59:18 +02:00
Efraim Flashner 71247a8e65
gnu: newsboat: Update to 2.29.
* gnu/packages/syndication.scm (newsboat): Update to 2.29.
[cargo-development-inputs]: Move rust-cxx-build-1 ...
[cargo-inputs]: ... to here.
2022-09-30 17:11:36 +03:00
Efraim Flashner a3b6b7e91f
gnu: rust-unicode-width-0.1: Update to 0.1.10.
* gnu/packages/crates-io.scm (rust-unicode-width-0.1): Update to 0.1.10.
2022-09-30 17:11:36 +03:00
Efraim Flashner 6a1b3e30c2
gnu: rust-regex-syntax-0.6: Update to 0.6.27.
* gnu/packages/crates-io.scm (rust-regex-syntax-0.6): Update to 0.6.27.
2022-09-30 17:11:35 +03:00
Efraim Flashner 3a00bcc252
gnu: rust-regex-1: Update to 1.6.0.
* gnu/packages/crates-io.scm (rust-regex-1): Update to 1.6.0.
2022-09-30 17:11:35 +03:00
Efraim Flashner f4715b2f0a
gnu: rust-quote-1: Update to 1.0.21.
* gnu/packages/crates-io.scm (rust-quote-1): Update to 1.0.21.
2022-09-30 17:11:35 +03:00
Efraim Flashner 91e1dc05da
gnu: rust-percent-encoding-2: Update to 2.2.0.
* gnu/packages/crates-io.scm (rust-percent-encoding-2): Update to 2.2.0.
2022-09-30 17:11:35 +03:00
Efraim Flashner 2e6fd5bd58
gnu: rust-lexopt-0.2: Update to 0.2.1.
* gnu/packages/crates-io.scm (rust-lexopt-0.2): Update to 0.2.1.
2022-09-30 17:11:34 +03:00
Efraim Flashner b3c55e94ab
gnu: rust-fastrand-1: Update to 1.8.0.
* gnu/packages/crates-io.scm (rust-fastrand-1): Update to 1.8.0.
2022-09-30 17:11:34 +03:00
Efraim Flashner 97666b13d5
gnu: rust-url-2: Update to 2.3.1.
* gnu/packages/crates-io.scm (rust-url-2): Update to 2.3.1.
[arguments]: Don't skip build.
[cargo-inputs]: Replace rust-idna-0.2 with 0.3. Remove rust-matches-0.1.
[cargo-development-inputs]: Remove rust-rustc-test-0.3. Add
rust-debugger-test-0.1, rust-debugger-test-parser-0.1.
2022-09-30 17:11:34 +03:00
Efraim Flashner 7298371ca2
gnu: Add rust-tester-0.9.
* gnu/packages/crates-io.scm (rust-tester-0.9): New variable.
(rust-tester-0.5): Inherit from rust-tester-0.9.
2022-09-30 17:11:33 +03:00
Efraim Flashner 9ebdd45123
gnu: Add rust-idna-0.3.
* gnu/packages/crates-io.scm (rust-idna-0.3): New variable.
(rust-idna-0.2): Inherit from rust-idna-0.3.
2022-09-30 17:11:33 +03:00
Efraim Flashner f9b8b5ac0e
gnu: rust-xdg-2: Update to 2.4.1.
* gnu/packages/crates-io.scm (rust-xdg-2): Update to 2.4.1.
[cargo-inputs]: Replace rust-dirs-3 with 4.
2022-09-30 17:11:33 +03:00
Efraim Flashner a9ac10ba2c
gnu: rust-rustversion-1: Update to 1.0.9.
* gnu/packages/crates-io.scm (rust-rustversion-1): Update to 1.0.9.
[cargo-inputs]: Remove rust-proc-macro2-1, rust-quote-1, rust-syn-1.
[cargo-development-inputs]: Add rust-trybuild-1.
2022-09-30 17:11:33 +03:00
Efraim Flashner a830bbf433
gnu: rust-form-urlencoded-1: Update to 1.1.0.
* gnu/packages/crates-io.scm (rust-form-urlencoded-1): Update to 1.1.0.
[cargo-inputs]: Remove rust-matches-0.1.
2022-09-30 17:11:32 +03:00
Efraim Flashner ddc7c84efd
gnu: rust-anyhow-1: Update to 1.0.65.
* gnu/packages/crates-io.scm (rust-anyhow-1): Update to 1.0.65.
[cargo-inputs]: Add rust-backtrace-0.3.
[cargo-development-inputs]: Add rust-syn-1.
2022-09-30 17:11:32 +03:00
Efraim Flashner 8b6d4d3eba
gnu: Add rust-debugger-test-0.1.
* gnu/packages/crates-io.scm (rust-debugger-test-0.1): New variable.
2022-09-30 17:11:32 +03:00
Efraim Flashner 83dd03f12f
gnu: Add rust-debugger-test-parser-0.1.
* gnu/packages/crates-io.scm (rust-debugger-test-parser-0.1): New
variable.
2022-09-30 17:11:32 +03:00
Efraim Flashner 784f45db06
gnu: rust-dirs-3: Update to 3.0.2.
* gnu/packages/crates-io.scm (rust-dirs-3): Update to 3.0.2.
2022-09-30 17:11:31 +03:00
Efraim Flashner af45ac7526
gnu: Add rust-dirs-4.
* gnu/packages/crates-io.scm (rust-dirs-4): New variable.
(rust-dirs-3): Inherit from rust-dirs-4.
2022-09-30 17:11:31 +03:00
Efraim Flashner ac4be035f2
gnu: rust-once-cell-1: Update to 1.15.0.
* gnu/packages/crates-io.scm (rust-once-cell-1): Update to 1.15.0.
[cargo-inputs]: Replace rust-atomic-polyfill-0.1 with 1.
2022-09-30 17:11:31 +03:00
Efraim Flashner 730f7c096d
gnu: rav1e: Force building with rust edition 2018.
* gnu/packages/video.scm (rav1e)[arguments]: Add phase to force all
input crates to be built with rust edition 2018.
2022-09-30 17:11:25 +03:00
Leo Famulari 9d9b53ed5f
gnu: linux-libre 4.9: Update to 4.9.330.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.330.
(linux-libre-4.9-pristine-source): Update hash.
2022-09-30 10:10:44 -04:00
Leo Famulari 2fbd7862d0
gnu: linux-libre 4.14: Update to 4.14.295.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.295.
(linux-libre-4.14-pristine-source): Update hash.
2022-09-30 10:10:43 -04:00
Leo Famulari e0d699bb17
gnu: linux-libre 4.19: Update to 4.19.260.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.260.
(linux-libre-4.19-pristine-source): Update hash.
2022-09-30 10:10:43 -04:00
Leo Famulari 7ff6569afe
gnu: linux-libre 5.4: Update to 5.4.215.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.215.
(linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes.
2022-09-30 10:10:43 -04:00
Leo Famulari de6276db4e
gnu: linux-libre 5.10: Update to 5.10.146.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.146.
(linux-libre-5.10-pristine-source): Update hash.
2022-09-30 10:10:43 -04:00
Leo Famulari 918bd1020a
gnu: linux-libre 5.15: Update to 5.15.71.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.71.
(linux-libre-5.15-pristine-source): Update hash.
2022-09-30 10:10:42 -04:00
Leo Famulari aab06a959b
gnu: linux-libre: Update to 5.19.12.
* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.12.
(linux-libre-5.19-pristine-source): Update hash.
2022-09-30 10:10:42 -04:00
Remco van 't Veer 51ab8b8553
gnu: quodlibet: Fix build.
Some tests fail because adwaita-icon-theme doesn't ship legacy icons
anymore since version 42.  Application runs fine without visual defects.

* gnu/packages/music.scm (quodlibet): Skip trayicon tests.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-09-30 15:48:39 +02:00
kiasoc5 a47a051e3d
gnu: picard: Update to 2.8.3, modernize package.
* gnu/packages/music.scm (picard): Update to 2.8.3.
[source]: Remove patch.
[arguments]: Use G-expressions. Remove trailing #t.
[native-inputs]: Remove input labels.
[inputs]: Add python-fasteners, python-pyyaml, python-markdown, python-pyjwt. Remove a transitive
dependency on QtWebKit. See <https://issues.guix.gnu.org/53289> for more information about this change.
* gnu/packages/patches/picard-fix-id3-rename-test.patch: Remove it.
* gnu/local.mk (dist_path_DATA): Update accordingly.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-09-30 15:43:35 +02:00
Ryan Tolboom df485be2f7
gnu: Add qdmr.
* gnu/packages/radio.scm (qdmr): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-09-30 12:54:00 +02:00
jgart via Guix-patches via bcf7dc6c56
gnu: Add emacs-new-purescript-mode.
* gnu/packages/emacs-xyz.scm (emacs-new-purescript-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-09-30 09:00:45 +02:00
Nicolas Goaziou 16df0649bd
gnu: emacs-tuareg: Update to 3.0.1.
* gnu/packages/ocaml.scm (emacs-tuareg): Update to 3.0.1.
2022-09-30 09:00:45 +02:00
Nicolas Goaziou 77a075e9ae
gnu: emacs-ement: Update to 0.3.
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.3.
2022-09-30 09:00:44 +02:00
Nicolas Goaziou b5b5f5fff3
gnu: emacs-tramp: Update to 2.5.3.3.
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.3.3.
2022-09-30 09:00:44 +02:00
Nicolas Goaziou c3020f3d37
gnu: emacs-taxy-magit-section: Update to 0.11.
* gnu/packages/emacs-xyz.scm (emacs-taxy-magit-section): Update to 0.11.
2022-09-30 09:00:44 +02:00
Nicolas Goaziou a233b9e89f
gnu: emacs-helm: Update to 3.8.8.
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.8.8.
2022-09-30 09:00:44 +02:00
Nicolas Goaziou 575da30495
gnu: emacs-pg: Update to 0.16.
* gnu/packages/emacs-xyz.scm (emacs-pg): Update to 0.16.
[source]<origin>: Change upstream repository, the older one being
unmaintained.
[home-page]: Update accordingly.
[description]: Expound it.
[license]: Set to GPL2+.
2022-09-30 09:00:43 +02:00
Hilton Chain a70c67cfe7
gnu: Add qtwayland, version 6.3.1.
* gnu/packages/qt.scm (qtwayland): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-09-29 23:19:55 -04:00
Hilton Chain 034f68bac3
gnu: qtwayland: Rename to qtwayland-5.
Automated via:

  git grep -l qtwayland | xargs sed 's/\qtwayland\b/\0-5/g' -i
  git checkout NEWS

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-09-29 23:19:55 -04:00
Ricardo Wurmus 1ee2d117d8
gnu: blast+: Build reproducibly.
Fixes <https://issues.guix.gnu.org/42141>.

* gnu/packages/bioinformatics.scm (blast+)[source]: Do not record kernel
version and use fix set of random numbers.
2022-09-29 23:21:16 +02:00
zamfofex 6943f22ee6
gnu: Add lite-xl.
* gnu/packages/text-editors.scm (lite-xl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-09-29 22:59:48 +02:00
jgart e6777cfa5e
gnu: Add emacs-cov.
* gnu/packages/emacs-xyz.scm (emacs-cov): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-09-29 11:39:12 +02:00
jgart c9f02fb44f
gnu: Add emacs-elquery.
* gnu/packages/emacs-xyz.scm (emacs-elquery): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-09-29 11:39:12 +02:00
Nicolas Goaziou 97a2f8e48e
gnu: emacs-popup: Update to 0.5.9.
* gnu/packages/emacs-xyz.scm (emacs-popup): Update to 0.5.9.
2022-09-29 11:39:11 +02:00
Nicolas Goaziou 38f2cbda71
gnu: emacs-async: Update to 1.9.7.
* gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.7.
2022-09-29 11:39:11 +02:00
Jonathan Brielmaier bb762ac517
gnu: icecat: Remove leftovers from version 91.
* gnu/packages/gnuzilla.scm (all-mozilla-91-locales, %icecat-91-version,
icecat-91-source): Remove variables.
2022-09-28 23:50:36 +02:00
Jonathan Brielmaier 16447da515
gnu: icedove: Update to 102.3.0.
* gnu/packages/gnuzilla.scm (icedove): Update to 102.3.0.
[source]: Use icecat-source again.
[arguments]: Remove `--frozen` flag from cargo invokation.
Remove `--with-user-appdir` flag (no longer honoured since TB91). Disable
WASM sandbox for now (needs more dependencies).
[inputs]: Add alsa-lib. Use icu4c-71.
[native-inputs]: Update hg-reference link. Use rust@1.59 and
rust-cbindgen@0.23.
2022-09-28 23:50:36 +02:00
Trevor Richards 0e36779986
gnu: Add gnome-shell-extension-unite-shell.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-unite-shell): New
variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-09-28 23:20:45 +02:00
Wiktor Żelazny 48c938fbc7
gnu: Add texlive-babel-czech.
* gnu/packages/tex.scm (texlive-babel-czech): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-09-28 23:15:29 +02:00
Andreas Rammhold f33733785a
gnu: wpa-supplicant: Enable OWE support.
With OWE support users are enable to connect to "Opportunistic Wireless
Encryption" networks. This means users are able to have an encrypted
data channel in an otherwise open wireless network.

* gnu/packages/admin.scm (wpa-supplicant)[arguments]: Rename
'configure-for-dbus' phase to 'set-config-options'.  Set CONFIG_OWE=y.
Remove trailing #t.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-09-28 22:41:49 +02:00
Ricardo Wurmus 352e02a768
gnu: Add r-ggghost.
* gnu/packages/cran.scm (r-ggghost): New variable.
2022-09-28 22:10:33 +02:00
Ricardo Wurmus 190c48c6ba
gnu: Add r-animation.
* gnu/packages/cran.scm (r-animation): New variable.
2022-09-28 22:10:33 +02:00
Ricardo Wurmus 2995865758
gnu: Add js-scianimator.
* gnu/packages/javascript.scm (js-scianimator): New variable.
2022-09-28 22:10:33 +02:00
Ricardo Wurmus 1e7696a95b
gnu: Add r-ggthemeassist.
* gnu/packages/cran.scm (r-ggthemeassist): New variable.
2022-09-28 22:10:33 +02:00
Ricardo Wurmus 211031ca0d
gnu: Add r-bundesligr.
* gnu/packages/cran.scm (r-bundesligr): New variable.
2022-09-28 22:10:33 +02:00
Ricardo Wurmus c592eb6980
gnu: Add r-pbdmpi.
* gnu/packages/cran.scm (r-pbdmpi): New variable.
2022-09-28 22:10:33 +02:00
Ricardo Wurmus d1f1947a46
gnu: Add r-rlecuyer.
* gnu/packages/cran.scm (r-rlecuyer): New variable.
2022-09-28 22:10:33 +02:00
Brice Waegeneire f4442721eb
gnu: Add acpilight.
* gnu/packages/linux.scm (acpilight): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-09-28 15:55:28 -04:00
Liliana Marie Prikler 86d91c4411
gnu: evolution: Add missing input.
In commit e4bf10ab0b, libnotify was removed
(and the removal documented).  This led to desktop notifications no longer
popping up for received emails.  Re-adding libnotify fixes this.

* gnu/packages/gnome.scm (evolution)[inputs]: Add libnotify.
2022-09-28 21:28:57 +02:00
Petr Hodina 3fb7add10f
gnu: Add btop.
* gnu/packages/admin.scm (btop): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-09-28 15:15:15 -04:00
jgart 7d27a5322c
gnu: Add elm-community-random-extra.
* gnu/packages/elm.scm (elm-community-random-extra): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-09-28 15:15:15 -04:00
Marius Bakke a065c6e0fd
gnu: ungoogled-chromium: Update to 106.0.5249.61-1.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M106.
(%chromium-version): Set to 106.0.5249.61.
(%arch-revision): New variable.
(%ungoogled-origin): Update hash.
(%chromium-gcc-patchset): Update to chromium-106-patchset-3.
(%gcc-patches): Adjust accordingly.
(arch-patch): New procedure.
(%ungoogled-chromium-unroll-ffmpeg.patch): Remove variable.
(%reverse-patches): New variable.
(ungoogled-chromium-snippet): Apply %REVERSE-PATCHES instead of just the one.
(ungoogled-chromium): Update hash.
[arguments]: Adjust compiler flags and header inclusions.
2022-09-28 21:04:23 +02:00
Liliana Marie Prikler eca27032d9
gnu: expat: Update replacement to 2.4.9 [fixes CVE-2022-40674].
* gnu/packages/xml.scm (expat/fixed): Update to 2.4.9.
2022-09-28 20:56:04 +02:00
Liliana Marie Prikler c67d462c53
gnu: gnome: Sort propagated inputs alphabetically within categories.
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Sort alphabetically
within categories.
2022-09-28 20:28:28 +02:00
Hilton Chain c59653b19e
gnu: telegram: Remove unused variables.
* gnu/packages/telegram.scm (lib-rlottie-for-telegram-desktop)
(lib-waylandshells-for-telegram-desktop,libtgvoip-for-telegram-desktop):
Remove variables.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-28 20:22:38 +02:00
Hilton Chain b906aa6a7c
gnu: telegram-desktop: Sort inputs alphabetically.
* gnu/packages/telegram.scm (telegram-desktop)[inputs]: Sort inputs
alphabetically.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-28 20:22:38 +02:00
Hilton Chain 08abd3e56b
gnu: telegram-desktop: Update to 4.2.2.
* gnu/packages/patches/telegram-desktop-allow-disable-libtgvoip.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/telegram.scm (tgcalls-for-telegram-desktop)
(codegen-for-telegram-desktop,lib-base-for-telegram-desktop)
(lib-crl-for-telegram-desktop,lib-lottie-for-telegram-desktop)
(lib-qr-for-telegram-desktop,lib-rpl-for-telegram-desktop)
(lib-spellcheck-for-telegram-desktop,lib-storage-for-telegram-desktop)
(lib-tl-for-telegram-desktop,lib-ui-for-telegram-desktop)
(lib-webrtc-for-telegram-desktop,lib-webview-for-telegram-desktop)
(cmake-helpers-for-telegram-desktop): Bump to submodule checkout.
(rlottie-for-telegram-desktop): Bump to submodule checkout.
[snippet]: Switch off werror.
[arguments]: Inherit from rlottie.
(telegram-desktop): Update to 4.2.2.
[patches]: Add telegram-desktop-allow-disable-libtgvoip.patch.
[arguments]<#:configure-flags>: Unbundle rlottie.
<#:phases>: Adjusted accordingly.
[native-inputs]: Add clang-toolchain.
Remove cmake-shared, extra-cmake-modules and qttools-5.
[inputs]: Add abseil-cpp-cxxstd17, kcoreaddons, libdispatch, libvpx, wayland,
webkitgtk.
Remove catch2, kwayland, libdbusmenu-qt, libtgvoip-for-telegram-desktop,
libx11, materialdecoration and qt5ct.
[propagated-inputs]: Remove dconf.
[license]: Adjust accordingly.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-28 20:22:38 +02:00
Hilton Chain c59d3d67fd
gnu: Add libdispatch.
* gnu/packages/c.scm (libdispatch): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-28 20:22:38 +02:00
Hilton Chain c9bd729dd1
gnu: Remove libvpx-for-telegram-desktop.
* gnu/packages/telegram.scm (libvpx-for-telegram-desktop): Remove variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-28 20:22:38 +02:00