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guix/gnu/packages
Ricardo Wurmus 302e7b7820
gnu: python-pybigwig: Update to 0.3.22.
* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.22.
[source]: Simplify snippet.
[arguments]: Explicitly disable tests; simplify 'link-with-libBigWig phase.
[build-system]: Use pyproject-build-system.
2023-05-14 13:26:21 +02:00
..
aux-files
patches gnu: mesa-opencl: Remove reference to patch. 2023-05-14 10:19:39 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: shepherd: Fetch code from 'mirror://gnu'. 2023-05-13 17:25:48 +02:00
adns.scm
agda.scm
aidc.scm
algebra.scm
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apparmor.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu: python-astropy: Update to 5.2.2. 2023-05-08 12:42:09 +03:00
attr.scm
audio.scm gnu: supercollider: Update to 3.13.0. 2023-05-11 18:46:04 +08:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm gnu: automake: Fix cross-build. 2023-05-11 09:03:44 +02:00
avahi.scm
avr-xyz.scm
avr.scm
axoloti.scm
backup.scm
barrier.scm gnu: barrier: Include NULL compatibility. 2023-05-11 16:38:28 +02:00
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: Add r-dropletutils. 2023-05-12 09:36:26 +02:00
bioinformatics.scm gnu: python-pybigwig: Update to 0.3.22. 2023-05-14 13:26:21 +02:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm
bootstrap.scm
bqn.scm
browser-extensions.scm
build-tools.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
busybox.scm
c.scm gnu: Add c-rrb. 2023-05-14 12:22:29 +02:00
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm
cedille.scm
certs.scm gnu: nss-certs: Update to 3.88.1. 2023-05-07 13:04:25 -04:00
check.scm
chemistry.scm
chez.scm
chicken.scm
chromium.scm
ci.scm gnu: cuirass: Update to 4a8a4bc. 2023-05-10 00:23:53 +02:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm gnu: global: Update to 6.6.10. 2023-05-11 21:33:02 +03:00
commencement.scm
compression.scm
compton.scm
configuration-management.scm
conky.scm
connman.scm
containers.scm
convmv.scm
cook.scm
coq.scm
cpio.scm
cpp.scm gnu: cpp: Mention that autoload prevents module cycles. 2023-05-14 12:29:04 +02:00
cppi.scm
cran.scm gnu: Add r-ggpattern. 2023-05-12 09:17:07 +02:00
crates-graphics.scm gnu: Add rust-glutin-glx-sys-0.4. 2023-05-07 19:29:38 +03:00
crates-gtk.scm gnu: Remove rust-pangocairo-sys-0.10. 2023-05-07 19:29:19 +03:00
crates-io.scm gnu: Add rust-webbrowser-0.8. 2023-05-07 19:29:43 +03:00
cross-base.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm
cvassistant.scm
cybersecurity.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
cyrus-sasl.scm
darwin.scm
databases.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
datamash.scm
datastructures.scm gnu: tllist: Update to 1.1.0. 2023-05-08 22:28:13 +02:00
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm
dejagnu.scm
dezyne.scm
dhall.scm
dico.scm
dictionaries.scm
diffoscope.scm gnu: diffoscope: Update to 242. 2023-05-13 18:38:28 +08:00
digest.scm
direct-connect.scm
disk.scm
display-managers.scm
distributed.scm
django.scm
djvu.scm
dlang.scm
dns.scm
docbook.scm
docker.scm
documentation.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm
efi.scm
electronics.scm
elf.scm
elixir.scm
elm.scm
emacs-xyz.scm gnu: Add emacs-framemove. 2023-05-11 23:55:43 +02:00
emacs.scm
embedded.scm
emulators.scm
enchant.scm
engineering.scm gnu: poke: Update to 3.2. 2023-05-14 10:21:12 +03:00
enlightenment.scm
entr.scm
erlang.scm
esolangs.scm
fabric-management.scm
fcitx.scm
fcitx5.scm
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: bitcoin-core: Update to 23.1. 2023-05-14 10:38:54 +02:00
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: Add Iosevka comfy font. 2023-05-14 11:31:48 +08:00
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm
freeipmi.scm
fribidi.scm
fsf.scm gnu: Add Free as in Freedom (2.0). 2023-05-12 20:22:02 +08:00
ftp.scm
fvwm.scm
game-development.scm gnu: Add bbcsdl. 2023-05-14 11:09:22 +08:00
games.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
gawk.scm
gcal.scm
gcc.scm gnu: gcc: Update cpu tuning architectures. 2023-05-09 09:52:24 +03:00
gd.scm
gdb.scm gnu: gdb/pinned: Move to gdb-12.1. 2023-05-07 19:29:42 +03:00
genealogy.scm
genimage.scm
geo.scm gnu: Add python-timezonefinder. 2023-05-08 12:42:09 +03:00
gettext.scm
ghostscript.scm
gimp.scm gnu: gimp: Build with librsvg-for-system. 2023-05-09 08:23:05 +03:00
gkrellm.scm
gl.scm gnu: mesa-opencl: Remove reference to patch. 2023-05-14 10:19:39 +02:00
glib.scm
gnome-xyz.scm
gnome.scm gnu: librsvg-for-system: Choose librsvg based on package support. 2023-05-07 19:29:43 +03:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: icecat: Update to 102.11.0-guix0-preview1 [security fixes]. 2023-05-09 14:45:39 -04:00
gobby.scm
golang.scm
gperf.scm
gpodder.scm
gps.scm
graph.scm
graphics.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: gdk-pixbuf: Adjust skipped failing tests. 2023-05-07 19:29:20 +03:00
guile-wm.scm
guile-xyz.scm gnu: guile-fibers-next: Update to 1.2.0-2.745bd40. 2023-05-10 11:08:07 +01:00
guile.scm
gv.scm
gxmessage.scm
hardware.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
haskell-apps.scm gnu: git-annex: Update to 10.20230407. 2023-05-11 21:33:05 +03:00
haskell-check.scm gnu: ghc-tasty: Add missing dependency on i686-linux. 2023-05-13 09:34:35 +02:00
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
haxe.scm
heads.scm
hexedit.scm
high-availability.scm
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
image-viewers.scm gnu: qiv: Update to 2.3.3. 2023-05-11 21:33:05 +03:00
image.scm
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm
instrumentation.scm
ipfs.scm
irc.scm
irods.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
iso-codes.scm
jami.scm
java-bootstrap.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java-xml.scm
java.scm
javascript.scm
jemalloc.scm
jose.scm
julia-jll.scm
julia-xyz.scm
julia.scm
jupyter.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
kawa.scm
kde-frameworks.scm
kde-games.scm
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm
kde.scm
kerberos.scm
kodi.scm gnu: kodi: Fix build against latest mesa. 2023-05-10 13:56:10 -05:00
language.scm
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm
linux.scm
lirc.scm
lisp-check.scm
lisp-xyz.scm gnu: sbcl-serapeum: Update to 20230511. 2023-05-12 11:56:20 +02:00
lisp.scm gnu: txr: Update to 286. 2023-05-09 14:15:23 +02:00
llvm.scm
logging.scm gnu: kodi: Fix build with latest glibc. 2023-05-10 13:56:04 -05:00
logo.scm
loko.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: python-lightning-cloud: Use older version of fastapi. 2023-05-12 10:50:01 +02:00
magic-wormhole.scm
mail.scm gnu: mutt: Update to 2.2.10. 2023-05-11 21:33:05 +03:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
microcom.scm
minetest.scm
mingw.scm
moe.scm
mold.scm
monitoring.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: Add xuidesigner. 2023-05-13 18:26:25 +02:00
musl.scm
myrddin.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm
nfs.scm
nickle.scm
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm
node.scm
notcurses.scm
noweb.scm
nss.scm gnu: nss-certs: Update to 3.88.1. 2023-05-07 13:04:25 -04:00
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orange.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix-build-coordinator: Update to 0-81.3f6473c. 2023-05-10 11:06:02 +01:00
pantheon.scm
parallel.scm
pascal.scm
password-utils.scm
patchutils.scm
patool.scm
pciutils.scm
pcre.scm
pdf.scm
pem.scm
pep.scm
perl-check.scm
perl-compression.scm
perl-maths.scm
perl-web.scm
perl.scm
perl6.scm
phabricator.scm
photo.scm
php.scm
piet.scm
pikchr.scm
pkg-config.scm
plan9.scm
plotutils.scm
poedit.scm
polkit.scm
popt.scm
potassco.scm gnu: Add python-clinguin. 2023-05-09 19:54:27 +02:00
presentation.scm
pretty-print.scm
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
pypy.scm
python-build.scm
python-check.scm Revert "gnu: Add python-pytest-enabler." 2023-05-11 20:41:16 +02:00
python-compression.scm
python-crypto.scm
python-science.scm gnu: python-distributed: Update to 2023.4.1. 2023-05-11 15:59:22 +02:00
python-web.scm gnu: python-rapidjson: Use pyproject-build-system. 2023-05-13 11:03:52 +02:00
python-xyz.scm gnu: python-sentry-sdk: Disable tests not working with pytest-7. 2023-05-13 14:52:17 +02:00
python.scm
qt.scm gnu: python-shiboken-2: Add fix for python-pyside-2. 2023-05-10 18:00:37 +02:00
racket.scm
radio.scm
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rocm.scm
rpc.scm
rpm.scm
rrdtool.scm
rsync.scm
ruby.scm
rush.scm
rust-apps.scm gnu: rust-cargo-edit: Fix build. 2023-05-07 19:29:33 +03:00
rust.scm Revert "gnu: rust-bootstrap: Remove aarch64 as a supported architecture." 2023-05-09 16:54:29 +03:00
sagemath.scm
samba.scm
sawfish.scm
scanner.scm
scheme.scm gnu: emacs-gerbil-mode: Move to scheme.scm. 2023-05-10 00:23:53 +02:00
screen.scm
scribus.scm
scsi.scm
sdl.scm
search.scm
security-token.scm
selinux.scm
sequoia.scm gnu: libsequoia: Use existing rust-tokio-1. 2023-05-07 19:29:25 +03:00
serialization.scm
serveez.scm
shells.scm
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
solidity.scm
speech.scm
sphinx.scm gnu: python-sphinx-panels: Use older docutils. 2023-05-13 11:03:52 +02:00
spice.scm
spreadsheet.scm
sqlite.scm
squirrel.scm
ssh.scm
sssd.scm
stalonetray.scm
statistics.scm gnu: r-deoptimr: Update to 1.0-13. 2023-05-09 15:24:14 +02:00
stb.scm
stenography.scm
storage.scm
suckless.scm
sugar.scm
swig.scm
sync.scm
syncthing.scm
syndication.scm gnu: newsboat: Update to 2.31. 2023-05-07 19:29:32 +03:00
synergy.scm
task-management.scm
task-runners.scm
tbb.scm
tcl.scm
telegram.scm
telephony.scm
terminals.scm Merge branch 'rust-team' 2023-05-09 09:56:33 +03:00
terraform.scm
tex.scm gnu: texlive-datetime2: Add needed propagated-inputs. 2023-05-11 23:56:24 +02:00
texinfo.scm
text-editors.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
textutils.scm
time.scm gnu: python-arrow: Update to 1.2.3. 2023-05-10 19:27:08 +02:00
tls.scm gnu: guile-gnutls: Fix cross-compilation. 2023-05-11 13:21:45 +02:00
tmux.scm
toolkits.scm
tor.scm
toys.scm
tree-sitter.scm gnu: tree-sitter-cli: Fix build with 0.20.8 version. 2023-05-07 19:37:56 +03:00
tryton.scm
tv.scm
uglifyjs.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: git: Update to 2.40.1 [security fixes]. 2023-05-11 16:38:28 +02:00
video.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
vim.scm
virtualization.scm
vlang.scm
vnc.scm
vpn.scm
vulkan.scm
w3m.scm
wdiff.scm
weather.scm
web-browsers.scm gnu: lagrange: Update to 1.15.9. 2023-05-11 21:33:05 +03:00
web.scm
webkit.scm
wget.scm
wine.scm
wireservice.scm gnu: python-leather: Update to 0.3.4. 2023-05-09 14:20:11 +02:00
wm.scm gnu: dwl: Update to 0.4. 2023-05-14 10:43:14 +08:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
xfce.scm gnu: mousepad: Update to 0.6.1. 2023-05-14 15:10:52 +08:00
xfig.scm
xiph.scm
xml.scm
xnee.scm
xorg.scm
zig-xyz.scm
zig.scm
zile.scm
zwave.scm