2016-08-30 17:28:48 +00:00
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;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2016 John Darrington <jmd@gnu.org>
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2023-06-25 21:28:20 +00:00
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;;; Copyright © 2018–2023 Tobias Geerinckx-Rice <me@tobias.gr>
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2023-10-22 16:40:49 +00:00
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;;; Copyright © 2018-2023 Efraim Flashner <efraim@flashner.co.il>
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2019-05-19 07:09:48 +00:00
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;;; Copyright © 2019 by Amar Singh <nly@disroot.org>
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2020-04-02 10:53:17 +00:00
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;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in>
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2021-05-03 17:34:34 +00:00
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;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net>
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2023-04-21 20:04:45 +00:00
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;;; Copyright © 2021-2023 Sharlatan Hellseher <sharlatanus@gmail.com>
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2022-01-09 04:37:22 +00:00
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;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net>
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2021-06-24 13:23:21 +00:00
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;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
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2021-12-10 06:07:06 +00:00
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;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
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2023-07-06 22:13:05 +00:00
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;;; Copyright © 2023 Iliya Tikhonenko <tikhonenko@mpe.mpg.de>
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;;; Copyright © 2023 Andreas Enge <andreas@enge.fr>
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2023-09-17 19:12:39 +00:00
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;;; Copyright © 2023 Simon Tournier <zimon.toutoune@gmail.com>
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2024-01-09 11:04:23 +00:00
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;;; Copyright © 2024 Ricardo Wurmus <rekado@elephly.net>
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2024-02-05 15:40:35 +00:00
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;;; Copyright © 2024 Andy Tai <lichengtai@gmail.com>
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2016-08-30 17:28:48 +00:00
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages astronomy)
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2016-08-30 19:09:56 +00:00
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#:use-module ((guix licenses) #:prefix license:)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages algebra)
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2019-04-18 14:00:46 +00:00
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#:use-module (gnu packages autotools)
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2022-08-13 23:25:31 +00:00
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#:use-module (gnu packages base)
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2022-06-12 21:25:07 +00:00
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#:use-module (gnu packages bison)
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2021-11-12 21:21:12 +00:00
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#:use-module (gnu packages boost)
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2021-01-31 02:49:34 +00:00
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#:use-module (gnu packages check)
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2022-10-30 21:56:52 +00:00
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#:use-module (gnu packages cmake)
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2017-03-02 05:58:34 +00:00
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#:use-module (gnu packages compression)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages curl)
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2022-11-24 11:24:41 +00:00
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#:use-module (gnu packages databases)
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gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
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#:use-module (gnu packages documentation)
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2022-06-12 21:25:07 +00:00
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#:use-module (gnu packages flex)
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2020-04-02 10:53:17 +00:00
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#:use-module (gnu packages fontutils)
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2022-05-18 20:31:18 +00:00
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#:use-module (gnu packages gcc)
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2023-04-27 23:43:13 +00:00
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#:use-module (gnu packages geo)
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2017-03-02 05:58:34 +00:00
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#:use-module (gnu packages gettext)
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#:use-module (gnu packages gl)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages glib)
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2019-06-13 17:23:22 +00:00
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#:use-module (gnu packages gnome)
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gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
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#:use-module (gnu packages gps)
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2023-03-08 23:26:37 +00:00
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#:use-module (gnu packages graph)
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gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
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#:use-module (gnu packages graphviz)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages image)
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2022-10-30 21:56:52 +00:00
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#:use-module (gnu packages image-processing)
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2024-07-02 20:55:15 +00:00
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#:use-module (gnu packages jupyter)
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2022-12-11 22:25:45 +00:00
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#:use-module (gnu packages libevent)
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2021-01-31 02:49:34 +00:00
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#:use-module (gnu packages libusb)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages lua)
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2023-07-03 15:43:17 +00:00
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#:use-module (gnu packages machine-learning)
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2016-08-30 19:09:56 +00:00
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#:use-module (gnu packages maths)
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2022-05-23 22:44:58 +00:00
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#:use-module (gnu packages multiprecision)
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2022-06-12 21:25:07 +00:00
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#:use-module (gnu packages ncurses)
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2020-04-02 10:53:17 +00:00
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#:use-module (gnu packages netpbm)
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2023-07-10 23:39:20 +00:00
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#:use-module (gnu packages onc-rpc)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages perl)
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2022-10-30 21:56:52 +00:00
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#:use-module (gnu packages photo)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages pkg-config)
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2024-04-20 21:50:40 +00:00
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#:use-module (gnu packages plotutils)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages pretty-print)
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2022-06-12 21:25:07 +00:00
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#:use-module (gnu packages python)
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2022-06-25 01:30:59 +00:00
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#:use-module (gnu packages python-build)
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2021-02-19 09:07:28 +00:00
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#:use-module (gnu packages python-check)
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gnu: python-asdf: Update to 2.13.0.
* gnu/packages/astronomy.scm (python-asdf): Update to 2.13.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-astropy, python-psutil, python-pytest,
python-pytest-doctestplus, python-pytest-openfiles, python-pytest-remotedata,
python-semantic-version.
[propagated-inputs]: Add python-asdf-standard, python-asdf-transform-schemas,
python-asdf-unit-schemas python-importlib-metadata, python-jsonschema-next,
python-lz4. Remove python-jsonschema.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-07 23:06:53 +00:00
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#:use-module (gnu packages python-compression)
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2021-02-07 23:38:58 +00:00
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#:use-module (gnu packages python-crypto)
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#:use-module (gnu packages python-science)
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2022-01-09 04:37:22 +00:00
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#:use-module (gnu packages python-web)
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2021-02-01 14:56:41 +00:00
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#:use-module (gnu packages python-xyz)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages qt)
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2022-06-12 21:25:07 +00:00
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#:use-module (gnu packages readline)
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2023-07-06 22:13:05 +00:00
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#:use-module (gnu packages sqlite)
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2022-12-08 00:02:59 +00:00
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#:use-module (gnu packages sphinx)
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2024-06-11 22:00:59 +00:00
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#:use-module (gnu packages statistics)
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2022-10-30 21:56:52 +00:00
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#:use-module (gnu packages textutils)
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2022-01-04 15:42:24 +00:00
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#:use-module (gnu packages time)
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gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
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#:use-module (gnu packages tls)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages version-control)
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2021-02-16 22:44:03 +00:00
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#:use-module (gnu packages video)
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2024-07-02 20:55:27 +00:00
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#:use-module (gnu packages web)
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2021-11-12 21:21:12 +00:00
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#:use-module (gnu packages wxwidgets)
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2020-04-05 13:22:17 +00:00
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#:use-module (gnu packages xiph)
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2021-10-30 02:51:33 +00:00
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#:use-module (gnu packages xml)
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2020-04-02 10:53:17 +00:00
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#:use-module (gnu packages xorg)
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2022-06-12 21:25:07 +00:00
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#:use-module (gnu packages)
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2017-03-02 05:58:34 +00:00
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#:use-module (guix build-system cmake)
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2022-06-26 17:25:12 +00:00
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#:use-module (guix build-system copy)
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2019-06-13 17:23:22 +00:00
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#:use-module (guix build-system gnu)
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2022-10-30 21:56:52 +00:00
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#:use-module (guix build-system meson)
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2024-05-20 22:12:31 +00:00
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#:use-module ((guix build-system python) #:select (pypi-uri))
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2022-11-07 23:06:48 +00:00
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#:use-module (guix build-system pyproject)
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2022-06-12 21:25:07 +00:00
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#:use-module (guix download)
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#:use-module (guix gexp)
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#:use-module (guix git-download)
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#:use-module (guix packages)
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#:use-module (guix utils)
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2021-01-22 22:46:11 +00:00
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#:use-module (ice-9 match)
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2019-06-13 17:23:22 +00:00
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#:use-module (srfi srfi-1))
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2016-08-30 17:28:48 +00:00
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2022-11-16 22:50:35 +00:00
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(define-public alfa
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(package
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(name "alfa")
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(version "2.2")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/rwesson/ALFA")
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(commit (string-append "v" version))))
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(sha256
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(base32
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"0aqxqar36822mh373awsl79j7zn8vik4yddyydsxv0c76gn4i2k3"))
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(file-name (git-file-name name version))))
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(build-system gnu-build-system)
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(arguments
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(list #:parallel-build? #f
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#:make-flags #~(list (string-append "PREFIX="
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#$output)
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(string-append "VERSION="
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#$version))
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2024-05-13 07:50:12 +00:00
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#:tests? (not (or (%current-target-system)
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;; The test suite consumes all disk space
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(target-riscv64?)))
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2024-05-13 07:52:54 +00:00
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#:test-target "fittest"
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2022-11-16 22:50:35 +00:00
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#:phases #~(modify-phases %standard-phases
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(delete 'configure)
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(delete 'check)
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(add-after 'install 'post-install-check
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2024-05-13 07:52:54 +00:00
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(assoc-ref %standard-phases 'check)))))
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2022-11-16 22:50:35 +00:00
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(inputs (list cfitsio gfortran))
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(home-page "https://nebulousresearch.org/codes/alfa/")
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(synopsis "Automated line fitting algorithm")
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(description
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"This package provides @acronym{ALFA, Automatic line fitting algorithm},
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which can identify and fit hundreds of lines in emission line spectra in just a
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few seconds with following features:
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@itemize
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@item A population of synthetic spectra is generated using a reference line
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catalogue.
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@item The goodness of fit for each synthetic spectrum is calculated. The best
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sets of parameters are retained and the rest discarded.
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@item A new population of synthetic spectra is obtained by averaging pairs of
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the best performers.
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@item A small fraction of the parameters of the lines in the new generation are
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randomly altered.
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@item The process repeats until a good fit is obtained.
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@end itemize")
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(license license:gpl3)))
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2022-06-26 17:25:12 +00:00
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(define-public aocommon
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2023-12-15 00:06:41 +00:00
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(let ((commit "9272ea36693a7ce7aa3524a9e212a60a509c3b8a")
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(revision "2"))
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2022-06-26 17:25:12 +00:00
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(package
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(name "aocommon")
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(version (git-version "0.0.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://gitlab.com/aroffringa/aocommon")
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(commit commit)))
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(sha256
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2023-12-15 00:06:41 +00:00
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(base32 "0klcrrlkc4sjpr83m2gnwb65lg798rydyvrlpangf7np1qg4zbk5"))
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2022-06-26 17:25:12 +00:00
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(file-name (git-file-name name version))))
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(build-system copy-build-system)
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(arguments
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(list #:install-plan
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#~'(("include/aocommon" "include/aocommon"))))
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(home-page "https://gitlab.com/aroffringa/aocommon")
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(synopsis "Collection of functionality that is reused in astronomical applications")
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(description
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"This package provides source-only AOCommon collection of functionality that is
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reused in several astronomical applications, such as @code{wsclean},
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@code{aoflagger}, @code{DP3} and @code{everybeam}.")
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(license license:gpl3+))))
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2024-06-06 15:19:22 +00:00
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(define-public aoflagger
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(package
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(name "aoflagger")
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(version "3.4.0")
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(source
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(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://gitlab.com/aroffringa/aoflagger")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0dxmcy04cayhs4s2z41wls1dnmg9hkffvlqcmc660idqziffvv1g"))
|
|
|
|
|
(patches
|
|
|
|
|
(search-patches "aoflagger-use-system-provided-pybind11.patch"))
|
|
|
|
|
(file-name (git-file-name name version))))
|
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; Tests require external files download from
|
|
|
|
|
;; https://www.astron.nl/citt/ci_data/aoflagger/
|
|
|
|
|
#:tests? #f
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list (string-append "-DCASACORE_ROOT_DIR="
|
|
|
|
|
#$(this-package-input "casacore")))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
;; aocommon and pybind11 are expected to be found as git submodules,
|
|
|
|
|
;; link them before build.
|
|
|
|
|
(add-after 'unpack 'link-submodule-package
|
|
|
|
|
(lambda _
|
|
|
|
|
(rmdir "external/aocommon")
|
|
|
|
|
(symlink #$(this-package-native-input "aocommon")
|
|
|
|
|
(string-append (getcwd) "/external/aocommon")))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list aocommon
|
|
|
|
|
boost
|
|
|
|
|
pkg-config
|
|
|
|
|
python
|
|
|
|
|
pybind11))
|
|
|
|
|
(inputs
|
|
|
|
|
(list casacore
|
|
|
|
|
cfitsio
|
|
|
|
|
fftw
|
|
|
|
|
gsl
|
|
|
|
|
gtkmm-3
|
|
|
|
|
hdf5
|
|
|
|
|
libpng
|
|
|
|
|
libsigc++
|
|
|
|
|
libxml2
|
|
|
|
|
lua
|
|
|
|
|
openblas
|
|
|
|
|
zlib))
|
|
|
|
|
(home-page "https://gitlab.com/aroffringa/aoflagger")
|
|
|
|
|
(synopsis "Astronomical tool that can find and remove radio-frequency interference")
|
|
|
|
|
(description
|
|
|
|
|
"AOFlagger is a tool that can find and remove radio-frequency
|
|
|
|
|
interference (RFI) in radio astronomical observations. It can make use of Lua
|
|
|
|
|
scripts to make flagging strategies flexible, and the tools are applicable to a
|
|
|
|
|
wide set of telescopes.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2022-05-18 20:31:18 +00:00
|
|
|
|
(define-public calceph
|
|
|
|
|
(package
|
|
|
|
|
(name "calceph")
|
2024-05-20 22:12:32 +00:00
|
|
|
|
(version "4.0.0")
|
2022-05-18 20:31:18 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
2024-05-20 22:12:32 +00:00
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://gitlab.obspm.fr/imcce_calceph/calceph")
|
|
|
|
|
(commit (string-append name "_"
|
|
|
|
|
(string-replace-substring version "." "_")))))
|
2022-05-18 20:31:18 +00:00
|
|
|
|
(sha256
|
2024-05-20 22:12:32 +00:00
|
|
|
|
(base32 "1yabdq51plg3dijp68xajhsz395gi2fyp5qkvrj3dgv8d4qw52nw"))
|
|
|
|
|
(file-name (git-file-name name version))))
|
|
|
|
|
(build-system cmake-build-system)
|
2022-05-18 20:31:18 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list gfortran))
|
|
|
|
|
(home-page "https://www.imcce.fr/inpop/calceph")
|
|
|
|
|
(synopsis "Astronomical library to access the binary planetary ephemeris files")
|
|
|
|
|
(description
|
|
|
|
|
"The CALCEPH Library is designed to access the binary planetary ephemeris files,
|
|
|
|
|
such INPOPxx and JPL DExxx ephemeris files, (called @code{original JPL binary} or
|
|
|
|
|
@code{INPOP 2.0 or 3.0 binary} ephemeris files in the next sections) and the SPICE
|
|
|
|
|
kernel files (called @code{SPICE} ephemeris files in the next sections). At the
|
|
|
|
|
moment, supported SPICE files are:
|
|
|
|
|
|
|
|
|
|
@itemize
|
|
|
|
|
@item text Planetary Constants Kernel (KPL/PCK) files;
|
|
|
|
|
@item binary PCK (DAF/PCK) files;
|
|
|
|
|
@item binary SPK (DAF/SPK) files containing segments of type 1, 2, 3, 5, 8, 9,
|
|
|
|
|
12, 13, 17, 18, 19, 20, 21, 102, 103 and 120;
|
|
|
|
|
@item meta kernel (KPL/MK) files;
|
|
|
|
|
@item frame kernel (KPL/FK) files (only basic support).
|
|
|
|
|
@end itemize\n")
|
|
|
|
|
(license license:cecill)))
|
|
|
|
|
|
2023-02-28 00:12:27 +00:00
|
|
|
|
(define-public calcmysky
|
|
|
|
|
(package
|
|
|
|
|
(name "calcmysky")
|
2024-03-11 14:16:54 +00:00
|
|
|
|
(version "0.3.2")
|
2023-02-28 00:12:27 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/10110111/CalcMySky")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2024-03-11 14:16:54 +00:00
|
|
|
|
(base32 "1kybjlddrm8x4x5y82qczi6z1d2riv6zcfjzrh7pzg2vwj89izh0"))))
|
2023-02-28 00:12:27 +00:00
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list #:configure-flags
|
|
|
|
|
#~(list "-DQT_VERSION=6"
|
|
|
|
|
"-DCMAKE_CXX_FLAGS=-fPIC")))
|
|
|
|
|
(inputs
|
|
|
|
|
(list eigen glm qtbase))
|
|
|
|
|
(home-page "https://10110111.github.io/CalcMySky/")
|
|
|
|
|
(synopsis "Simulator of light scattering by planetary atmospheres")
|
|
|
|
|
(description
|
|
|
|
|
"CalcMySky is a software package that simulates scattering of light by the
|
|
|
|
|
atmosphere to render daytime and twilight skies (without stars). Its primary
|
|
|
|
|
purpose is to enable realistic view of the sky in applications such as
|
|
|
|
|
planetaria. Secondary objective is to make it possible to explore atmospheric
|
|
|
|
|
effects such as glories, fogbows etc., as well as simulate unusual environments
|
|
|
|
|
such as on Mars or an exoplanet orbiting a star with a non-solar spectrum of
|
|
|
|
|
radiation.
|
|
|
|
|
|
|
|
|
|
This package consists of three parts:
|
|
|
|
|
|
|
|
|
|
@itemize
|
|
|
|
|
@item @code{calcmysky} utility that does the precomputation of the atmosphere
|
|
|
|
|
model to enable rendering.
|
|
|
|
|
|
|
|
|
|
@item @code{libShowMySky} library that lets the applications render the
|
|
|
|
|
atmosphere model.
|
|
|
|
|
|
|
|
|
|
@item @code{ShowMySky} preview GUI that makes it possible to preview the
|
|
|
|
|
rendering of the atmosphere model and examine its properties.
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
|
|
|
|
(define-public calcmysky-qt5
|
|
|
|
|
(package/inherit calcmysky
|
|
|
|
|
(name "calcmysky-qt5")
|
|
|
|
|
(arguments
|
|
|
|
|
(list #:configure-flags
|
|
|
|
|
#~(list "-DQT_VERSION=5"
|
|
|
|
|
"-DCMAKE_CXX_FLAGS=-fPIC")))
|
|
|
|
|
(inputs
|
|
|
|
|
(modify-inputs (package-inputs calcmysky)
|
|
|
|
|
(replace "qtbase" qtbase-5)))
|
|
|
|
|
(synopsis "Qt5 build for the CalcMySky library.")))
|
|
|
|
|
|
2022-06-12 21:25:07 +00:00
|
|
|
|
(define-public casacore
|
|
|
|
|
(package
|
|
|
|
|
(name "casacore")
|
|
|
|
|
(version "3.4.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/casacore/casacore")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
|
|
|
|
"05ar5gykgh4dm826xplj5ri5rw7znhxrvin2l67a3mjwfys7r2a0"))
|
|
|
|
|
(file-name (git-file-name name version))))
|
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; Note: There are multiple failures in
|
|
|
|
|
;; tests which require additional measures data. They are
|
|
|
|
|
;; distributed via FTP without any license:
|
|
|
|
|
;; ftp://ftp.astron.nl/outgoing/Measures/
|
|
|
|
|
;; TODO: Check how to fix tests.
|
|
|
|
|
#:tests? #f
|
|
|
|
|
#:parallel-build? #t
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list "-DBUILD_PYTHON3=ON"
|
|
|
|
|
"-DBUILD_PYTHON=OFF"
|
|
|
|
|
"-DBUILD_TESTING=TRUE"
|
|
|
|
|
"-DUSE_HDF5=ON"
|
|
|
|
|
"-DUSE_OPENMP=OFF"
|
|
|
|
|
"-DUSE_THREADS=ON"
|
|
|
|
|
(string-append "-DDATA_DIR=" #$output "/data")
|
|
|
|
|
(string-append "-DPYTHON3_EXECUTABLE="
|
|
|
|
|
#$(this-package-input "python") "/bin")
|
|
|
|
|
(string-append "-DPYTHON3_INCLUDE_DIR="
|
|
|
|
|
#$(this-package-input "python") "/include")
|
|
|
|
|
(string-append "-DPYTHON3_LIBRARY="
|
|
|
|
|
#$(this-package-input "python") "/lib"))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'set-env
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" "/tmp")))
|
|
|
|
|
(add-after 'unpack 'use-absolute-rm
|
|
|
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
|
|
|
(substitute* "casa/OS/test/tFile.run"
|
|
|
|
|
(("/bin/rm")
|
|
|
|
|
(search-input-file inputs "/bin/rm")))))
|
|
|
|
|
(add-after 'unpack 'use-absolute-python3
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "build-tools/casacore_floatcheck"
|
|
|
|
|
(("#!/usr/bin/env python")
|
|
|
|
|
(string-append "#!" (which "python3"))))))
|
|
|
|
|
;; NOTE: (Sharlatan-20220611T200837+0100): Workaround for casacore
|
|
|
|
|
;; tests stuck with missing "qsub" issue.
|
|
|
|
|
;; https://github.com/casacore/casacore/issues/1122
|
|
|
|
|
(add-after 'unpack 'patch-pre-test-checks
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "build-tools/casacore_assay"
|
|
|
|
|
(("QSUBP=.*$") "QSUBP=\n")
|
|
|
|
|
(("YODP=.*$") "YODP=\n")))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list bison
|
|
|
|
|
boost
|
|
|
|
|
flex
|
|
|
|
|
readline))
|
|
|
|
|
(inputs
|
|
|
|
|
(list cfitsio
|
|
|
|
|
fftw
|
|
|
|
|
fftwf
|
|
|
|
|
gfortran
|
|
|
|
|
hdf5
|
|
|
|
|
ncurses
|
|
|
|
|
openblas
|
|
|
|
|
python
|
|
|
|
|
python-numpy
|
|
|
|
|
wcslib))
|
gnu: Use HTTPS package home pages wherever possible.
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise.
* gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]:
Likewise.
* gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise.
* gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise.
* gnu/packages/astronomy.scm (casacore, sextractor, libnova)
(xplanet)[home-page]: Likewise.
* gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao)
(freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms)
(libmodplug, libxmp, xmp, sox, drc, gsm, gnaural)
(streamripper)[home-page]: Likewise.
* gnu/packages/authentication.scm (pamtester)[home-page]: Likewise.
* gnu/packages/backup.scm (grsync)[home-page]: Likewise.
* gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma)
(r-plgem)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1)
(bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard)
(java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools)
(snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip)
(libsbml)[home-page]: Likewise.
* gnu/packages/build-tools.scm (tup)[home-page]: Likewise.
* gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools)
(cd-discid)[home-page]: Likewise.
* gnu/packages/check.scm (cunit, python-nose)
(python-pyhamcrest)[home-page]: Likewise.
* gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise.
* gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise.
* gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise.
* gnu/packages/compression.scm (p7zip)[home-page]: Likewise.
* gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial)
(r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook)
(r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags)
(r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm)
(r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet)
(r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde)
(r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels)
(r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom)
(r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat)
(r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]:
Likewise.
* gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13)
(rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20)
(rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20)
(rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20)
(rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise.
* gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise.
* gnu/packages/curl.scm (curlpp)[home-page]: Likewise.
* gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger)
(libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers)
(soci)[home-page]: Likewise.
* gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise.
* gnu/packages/debug.scm (remake)[home-page]: Likewise.
* gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise.
* gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise.
* gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise.
* gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise.
* gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise.
* gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise.
* gnu/packages/electronics.scm (xoscope)[home-page]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu)
(emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel)
(emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc)
(emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap)
(emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+)
(emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise.
* gnu/packages/embedded.scm (sdcc)[home-page]: Likewise.
* gnu/packages/engineering.scm (asco, libngspice, libspnav)
(openctm)[home-page]: Likewise.
* gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise.
* gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]:
Likewise.
* gnu/packages/finance.scm (gbonds)[home-page]: Likewise.
* gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]:
Likewise.
* gnu/packages/fltk.scm (ntk)[home-page]: Likewise.
* gnu/packages/fonts.scm (font-terminus, font-tex-gyre)
(font-comic-neue)[home-page]: Likewise.
* gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]:
Likewise.
* gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave)
(python-myhdl)[home-page]: Likewise.
* gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise.
* gnu/packages/ftp.scm (weex)[home-page]: Likewise.
* gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc)
(eureka, plib)[home-page]: Likewise.
* gnu/packages/games.scm (abe, alex4, armagetronad, barony)
(foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally)
(cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki)
(quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks)
(flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise.
* gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise.
* gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise.
* gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish)
(workrave)[home-page]: Likewise.
* gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise.
* gnu/packages/graph.scm (mscgen)[home-page]: Likewise.
* gnu/packages/graphics.scm (assimp, alembic, ctl, agg)
(opencsg)[home-page]: Likewise.
* gnu/packages/graphviz.scm (gts)[home-page]: Likewise.
* gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise.
* gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise.
* gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-http-client-restricted)
(ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]:
Likewise.
* gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg)
(ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats)
(ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints)
(ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon)
(ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards)
(ghc-template-haskell, ghc-boot-th, ghc-binary-orphans)
(ghc-postgresql-simple)[home-page]: Likewise.
* gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise.
* gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise.
* gnu/packages/image-processing.scm (mia)[home-page]: Likewise.
* gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr)
(qiv)[home-page]: Likewise.
* gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib)
(sng, mtpaint)[home-page]: Likewise.
* gnu/packages/java-xml.scm (java-simple-xml, java-jaxp)
(java-apache-xml-commons-resolver)[home-page]: Likewise.
* gnu/packages/java.scm (java-cisd-base, java-cisd-args4j)
(java-hamcrest-core, java-jsr305, java-eclipse-osgi)
(java-eclipse-equinox-common, java-eclipse-core-jobs)
(java-eclipse-equinox-registry, java-eclipse-equinox-app)
(java-eclipse-equinox-preferences, java-eclipse-core-contenttype)
(java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq)
(java-cdi-api)[home-page]: Likewise.
* gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise.
* gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]:
Likewise.
* gnu/packages/kde-internet.scm (kget)[home-page]: Likewise.
* gnu/packages/kde-systemtools.scm (dolphin-plugins)
(konsole)[home-page]: Likewise.
* gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise.
* gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise.
* gnu/packages/lego.scm (nqc)[home-page]: Likewise.
* gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise.
* gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise.
* gnu/packages/libffi.scm (libffi)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]:
Likewise.
* gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise.
* gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools)
(kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise.
* gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]:
Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser)
(sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore)
(sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell)
(sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise.
* gnu/packages/lisp.scm (lush2)[home-page]: Likewise.
* gnu/packages/logging.scm (log4cpp)[home-page]: Likewise.
* gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]:
Likewise.
* gnu/packages/mail.scm (muchsync, procmail, sendmail)
(opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise.
* gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise.
* gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh)
(metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3)
(frama-c)[home-page]: Likewise.
* gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]:
Likewise.
* gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise.
* gnu/packages/monitoring.scm (python-whisper, python-carbon)
(hostscope)[home-page]: Likewise.
* gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321)
(lame)[home-page]: Likewise.
* gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise.
* gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol)
(portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot)
(schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2)
(shiru-lv2)[home-page]: Likewise.
* gnu/packages/ncurses.scm (stfl)[home-page]: Likewise.
* gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird)
(tunctl, traceroute)[home-page]: Likewise.
* gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise.
* gnu/packages/ntp.scm (openntpd)[home-page]: Likewise.
* gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib)
(ocaml-graph, cubicle)[home-page]: Likewise.
* gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise.
* gnu/packages/package-management.scm (xstow, modules)[home-page]:
Likewise.
* gnu/packages/parallel.scm (xjobs)[home-page]: Likewise.
* gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]:
Likewise.
* gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]:
Likewise.
* gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]:
Likewise.
* gnu/packages/plan9.scm (drawterm)[home-page]: Likewise.
* gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]:
Likewise.
* gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise.
* gnu/packages/profiling.scm (otf2)[home-page]: Likewise.
* gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise.
* gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-cssutils)
(python-translationstring)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml)
(python-docutils, python-pexpect, python-importlib-resources)
(python-simplegeneric, python-urwid, python-xlrd, python-xlwt)
(python-pyasn1, python-pythondialog, python-tftpy, python-random2)
(python-arcp, python-pyopengl, python-sortedcollections)
(python-sortedcontainers, python-yapsy, python-pydispatcher)
(python-posix-ipc)[home-page]: Likewise.
* gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise.
* gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise.
* gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise.
* gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise.
* gnu/packages/regex.scm (tre)[home-page]: Likewise.
* gnu/packages/rsync.scm (librsync)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox)
(ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise.
* gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise.
* gnu/packages/screen.scm (dtach)[home-page]: Likewise.
* gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise.
* gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise.
* gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise.
* gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]:
Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise.
* gnu/packages/speech.scm (espeak)[home-page]: Likewise.
* gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise.
* gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice)
(r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable)
(python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm)
(r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]:
Likewise.
* gnu/packages/swig.scm (swig)[home-page]: Likewise.
* gnu/packages/task-management.scm (wtime)[home-page]: Likewise.
* gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise.
* gnu/packages/terminals.scm (libtermkey, mlterm, libvterm)
(libvterm)[home-page]: Likewise.
* gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs)
(texlive-csplain, biber, texmaker)[home-page]: Likewise.
* gnu/packages/text-editors.scm (joe)[home-page]: Likewise.
* gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise.
* gnu/packages/tv.scm (tvtime)[home-page]: Likewise.
* gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise.
* gnu/packages/upnp.scm (libupnp)[home-page]: Likewise.
* gnu/packages/version-control.scm (cvs)[home-page]: Likewise.
* gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib)
(liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl)
(dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise.
* gnu/packages/virtualization.scm (bochs)[home-page]: Likewise.
* gnu/packages/w3m.scm (w3m)[home-page]: Likewise.
* gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi)
(tidy-html, htmlcxx)[home-page]: Likewise.
* gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise.
* gnu/packages/wv.scm (wv)[home-page]: Likewise.
* gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise.
* gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c)
(opensp)[home-page]: Likewise.
* gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
2023-02-12 00:00:00 +00:00
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(home-page "https://casacore.github.io/casacore/")
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2022-06-12 21:25:07 +00:00
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(synopsis "Suite of C++ libraries for radio astronomy data processing")
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(description
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"The casacore package contains the core libraries of the old
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AIPS++/CASA (Common Astronomy Software Application) package. This split was
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made to get a better separation of core libraries and applications.
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@url{https://casa.nrao.edu/, CASA} is now built on top of Casacore.")
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(license license:gpl2+)))
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2023-07-10 23:39:19 +00:00
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(define-public ccfits
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(package
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(name "ccfits")
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(version "2.6")
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(source
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(origin
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(method url-fetch)
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(uri (string-append
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"https://heasarc.gsfc.nasa.gov/docs/software/fitsio/ccfits/"
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"CCfits-" version ".tar.gz"))
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(sha256
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(base32 "04l6na8vr5xadz3rbx62as79x1ch4994vbb625kx0dz5czdkkd1b"))))
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(build-system cmake-build-system)
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(inputs (list cfitsio))
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(home-page "https://heasarc.gsfc.nasa.gov/docs/software/fitsio/ccfits/")
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(synopsis "C++ interface to the CFITSIO")
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(description
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"CCfits is an object oriented interface to the cfitsio library. It is
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designed to make the capabilities of cfitsio available to programmers working in
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C++. It is written in ANSI C++ and implemented using the C++ Standard Library
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with namespaces, exception handling, and member template functions.")
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(license (license:non-copyleft "file://License.txt"
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"See License.txt in the distribution."))))
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2024-06-06 22:01:25 +00:00
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(define-public celestia
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(package
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(name "celestia")
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(version "1.6.4")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/celestiaproject/celestia")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0nz9k5nd2zmrbwj1qhsfwmvqymqk8c4yjxpybck44isrild2ah9j"))))
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(build-system gnu-build-system)
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(arguments
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(list
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#:modules
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`((guix build gnu-build-system)
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(guix build utils)
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(srfi srfi-1)
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(srfi srfi-71))
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#:configure-flags
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#~(list "--with-glut"
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(string-append "--with-lua=" #$(this-package-input "lua")))
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'patch-lua-version
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(lambda _
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(let* ((_ version (package-name->name+version
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#$(this-package-input "lua")))
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(components (string-split version #\.))
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(major+minor (string-join (take components 2) ".")))
|
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(substitute* "configure.ac"
|
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(("lua5.3")
|
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(string-append "lua-" major+minor)))))))))
|
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(native-inputs
|
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(list autoconf
|
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automake
|
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gettext-minimal
|
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libgit2
|
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libtool
|
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perl
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pkg-config))
|
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(inputs
|
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(list freeglut
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glu
|
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libjpeg-turbo
|
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libpng
|
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libtheora
|
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mesa))
|
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(propagated-inputs
|
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(list lua))
|
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(home-page "https://celestia.space/")
|
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(synopsis "Real-time 3D visualization of space")
|
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(description
|
|
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|
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"This simulation program lets you explore our universe in three
|
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dimensions. Celestia simulates many different types of celestial objects.
|
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From planets and moons to star clusters and galaxies, you can visit every
|
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object in the expandable database and view it from any point in space and
|
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time. The position and movement of solar system objects is calculated
|
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accurately in real time at any rate desired.")
|
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(license license:gpl2+)))
|
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(define-public celestia-gtk
|
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(package/inherit celestia
|
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(name "celestia-gtk")
|
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(inputs
|
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(modify-inputs (package-inputs celestia)
|
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(replace "freeglut" gtk+-2)
|
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(prepend cairo gtkglext libxmu libtheora pango-1.42)))
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(arguments
|
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(substitute-keyword-arguments (package-arguments celestia)
|
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((#:configure-flags flags '())
|
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#~(append #$flags
|
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(list "--enable-cairo"
|
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"--enable-theora"
|
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"--without-glut"
|
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"--with-gtk")))))
|
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(synopsis "Real-time 3D visualization of space (using GTK+)")))
|
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2016-08-30 17:28:48 +00:00
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(define-public cfitsio
|
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(package
|
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(name "cfitsio")
|
2024-07-01 21:18:18 +00:00
|
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(version "4.4.1")
|
2016-08-30 17:28:48 +00:00
|
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(source
|
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(origin
|
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(method url-fetch)
|
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(uri (string-append
|
2023-07-10 23:39:18 +00:00
|
|
|
|
"https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
|
2020-08-18 01:38:33 +00:00
|
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"cfitsio-" version ".tar.gz"))
|
2016-08-30 17:28:48 +00:00
|
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|
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(sha256
|
2024-07-01 21:18:18 +00:00
|
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(base32 "098x1l8ijwsjp2ivp3v7pamrmpgwj5xmgb4yppm9w3w044zxr8b6"))))
|
2016-08-30 17:28:48 +00:00
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
2022-12-11 22:25:40 +00:00
|
|
|
|
(list
|
2022-12-11 22:25:41 +00:00
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list (string-append "--with-bzip2=" #$(this-package-input "bzip2")))
|
2022-12-11 22:25:40 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'patch-paths
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "Makefile.in" (("/bin/") ""))))
|
|
|
|
|
(delete 'check)
|
|
|
|
|
;; TODO: Testing steps are sourced from docs/fitsio.pdf, implement
|
|
|
|
|
;; the logic in Guile in the future.
|
|
|
|
|
(add-after 'install 'post-install-check
|
|
|
|
|
(lambda* (#:key tests? #:allow-other-keys)
|
|
|
|
|
(when tests?
|
|
|
|
|
(invoke "make" "testprog")
|
|
|
|
|
(with-output-to-file "testprog.lis" (lambda _(invoke "./testprog")))
|
|
|
|
|
(invoke "diff" "-r" "testprog.lis" "testprog.out")
|
|
|
|
|
(invoke "cmp" "-l" "testprog.fit" "testprog.std")))))))
|
|
|
|
|
(native-inputs (list gfortran))
|
2022-12-11 22:25:41 +00:00
|
|
|
|
(inputs (list bzip2 curl zlib))
|
2018-01-31 03:09:29 +00:00
|
|
|
|
(home-page "https://heasarc.gsfc.nasa.gov/fitsio/fitsio.html")
|
2016-08-30 17:28:48 +00:00
|
|
|
|
(synopsis "Library for reading and writing FITS files")
|
|
|
|
|
(description "CFITSIO provides simple high-level routines for reading and
|
2018-01-31 03:08:59 +00:00
|
|
|
|
writing @dfn{FITS} (Flexible Image Transport System) files that insulate the
|
2016-08-30 17:28:48 +00:00
|
|
|
|
programmer from the internal complexities of the FITS format. CFITSIO also
|
|
|
|
|
provides many advanced features for manipulating and filtering the information
|
|
|
|
|
in FITS files.")
|
|
|
|
|
(license (license:non-copyleft "file://License.txt"
|
2022-12-11 22:25:40 +00:00
|
|
|
|
"See License.txt in the distribution."))))
|
2016-08-30 19:08:23 +00:00
|
|
|
|
|
2024-06-06 22:13:39 +00:00
|
|
|
|
(define-public erfa
|
|
|
|
|
(package
|
|
|
|
|
(name "erfa")
|
|
|
|
|
(version "2.0.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/liberfa/erfa")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1hxjbcvdlq4871r17fphbaf3bd8dsjagp1rdb3j8v6kr4f1dil9n"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list automake autoconf libtool pkg-config))
|
|
|
|
|
(home-page "https://github.com/liberfa/erfa")
|
|
|
|
|
(synopsis "Essential Routines for Fundamental Astronomy")
|
|
|
|
|
(description
|
|
|
|
|
"The @acronym{ERFA, Essential Routines for Fundamental Astronomy} C library
|
|
|
|
|
contains key algorithms for astronomy, and is based on the @acronym{SOFA,
|
|
|
|
|
Standards of Fundamental Astronomy} library published by the @acronym{IAU,
|
|
|
|
|
International Astronomical Union}.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-06-06 22:15:26 +00:00
|
|
|
|
(define-public eye
|
|
|
|
|
(package
|
|
|
|
|
(name "eye")
|
|
|
|
|
(version "1.4.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/astromatic/eye")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1j8rpgz3fjp6fw0qmxgfqycf3n01fzxds4w12vgyrhbnk658ia41"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list "CPPFLAGS=-fcommon"))) ; fix build with GCC 10
|
|
|
|
|
(home-page "https://www.astromatic.net/software/eye")
|
|
|
|
|
(synopsis "Small image feature detector using machine learning")
|
|
|
|
|
(description
|
|
|
|
|
"In @acronym{EyE, Enhance Your Extraction} an artificial neural network
|
|
|
|
|
connected to pixels of a moving window (@dfn{retina}) is trained to associate
|
|
|
|
|
these input stimuli to the corresponding response in one or several output
|
|
|
|
|
image(s). The resulting filter can be loaded in SExtractor to operate
|
|
|
|
|
complex, wildly non-linear filters on astronomical images. Typical
|
|
|
|
|
applications of EyE include adaptive filtering, feature detection and cosmetic
|
|
|
|
|
corrections.")
|
|
|
|
|
(license license:cecill)))
|
|
|
|
|
|
2024-06-06 22:29:16 +00:00
|
|
|
|
(define-public psfex
|
|
|
|
|
(package
|
|
|
|
|
(name "psfex")
|
|
|
|
|
(version "3.24.2")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/astromatic/psfex")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0ykgzyxnxjxqk6b8jng006wjilg4fqaxclpfn8plg6brk1qf39sn"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list "CPPFLAGS=-fcommon"
|
|
|
|
|
"--enable-openblas"
|
|
|
|
|
"--enable-plplot"
|
|
|
|
|
(string-append "--with-fftw-libdir="
|
|
|
|
|
#$(this-package-input "fftw") "/lib")
|
|
|
|
|
(string-append "--with-fftw-incdir="
|
|
|
|
|
#$(this-package-input "fftw") "/include")
|
|
|
|
|
(string-append "--with-openblas-libdir="
|
|
|
|
|
#$(this-package-input "openblas") "/lib")
|
|
|
|
|
(string-append "--with-openblas-incdir="
|
|
|
|
|
#$(this-package-input "openblas") "/include")
|
|
|
|
|
(string-append "--with-plplot-libdir="
|
|
|
|
|
#$(this-package-input "plplot") "/lib")
|
|
|
|
|
(string-append "--with-plplot-incdir="
|
|
|
|
|
#$(this-package-input "plplot") "/include"))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list autoconf automake libtool pkg-config))
|
|
|
|
|
(inputs
|
|
|
|
|
(list openblas fftw fftwf plplot))
|
|
|
|
|
(home-page "https://www.astromatic.net/software/psfex/")
|
|
|
|
|
(synopsis "Astronomical PSF modelling and quality assessment")
|
|
|
|
|
(description
|
|
|
|
|
"@acronym{PSFEx, PSF Extractor} extracts models of the @acronym{PSF,
|
|
|
|
|
Point Spread Function} from FITS images processed with SExtractor, and
|
|
|
|
|
measures the quality of images. The generated PSF models can be used for
|
|
|
|
|
model-fitting photometry or morphological analyses.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2024-07-02 20:55:27 +00:00
|
|
|
|
(define-public python-ads
|
|
|
|
|
(package
|
|
|
|
|
(name "python-ads")
|
|
|
|
|
(version "0.12.6")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "ads" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "18aizbsmhwz99flz8n101mi0n0lk3m3qqzfvmxrmjwqvydfypjml"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-httpretty))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-mock
|
|
|
|
|
python-requests
|
|
|
|
|
python-six
|
|
|
|
|
python-werkzeug))
|
|
|
|
|
(home-page "http://www.github.com/andycasey/ads/")
|
|
|
|
|
(synopsis "Python client to NASA's Astrophysics Data System")
|
|
|
|
|
(description
|
|
|
|
|
"This package provdies a Python Module to Interact with NASA's
|
|
|
|
|
@acronym{Astrophysics Data System,ADS} that Doesn't Suck™.")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2023-10-11 01:39:34 +00:00
|
|
|
|
(define-public python-aplpy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-aplpy")
|
|
|
|
|
(version "2.1.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "aplpy" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0ph9jhv4q4i4z6nkqr6hjw9148kdlnayxsn83qgv5dqn0h3nc9r8"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
2024-01-27 21:45:07 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; FIXME: https://github.com/aplpy/aplpy/issues/492
|
|
|
|
|
#:tests? #f
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(delete 'sanity-check))))
|
2023-10-11 01:39:34 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-pillow
|
|
|
|
|
python-pyavm
|
|
|
|
|
python-pyregion
|
|
|
|
|
python-reproject
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-shapely))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest-astropy
|
gnu: python-asdf: Adjust inputs.
python-asdf requires python-semantic-version during runtime which may be
reproduced by:
guix shell python-asdf python -- python3 -c 'import asdf'
<...>
ModuleNotFoundError: No module named 'semantic_version'
* gnu/packages/astronomy.scm (python-asdf): Adjust inputs.
[native-inputs]: Remove python-semantic-version.
[propagated-inputs]: Add python-semantic-version.
(python-asdf-astropy, python-asdf-compression, python-asdf-coordinates-schemas,
python-asdf-wcs-schemas, python-asdf-zarr, python-astroalignn, python-ccdproc,
python-crds, python-ginga, python-gwcs, python-photutils, python-rad,
python-reproject, python-roman-datamodels, python-spectral-cube,
python-specutils, python-stcal, python-stdatamodels, python-stpipe,
python-stsynphot, python-sunpy, python-synphot, python-tweakwcs): Remove
python-semantic-version from native or propagated inputs.
Change-Id: I96bf57f77c327f4ff208e0b173e84bcdd4c287da
Reported-by: Iliya Tikhonenko <tikhonenko@mpe.mpg.de>
2024-04-20 20:53:00 +00:00
|
|
|
|
python-pytest-mpl))
|
2023-10-11 01:39:34 +00:00
|
|
|
|
(home-page "http://aplpy.github.io")
|
|
|
|
|
(synopsis "Astronomical Plotting Library in Python")
|
|
|
|
|
(description
|
|
|
|
|
"@acronym{APLpy, the Astronomical Plotting Library in Python} is a Python
|
|
|
|
|
module aimed at producing publication-quality plots of astronomical imaging data
|
|
|
|
|
in FITS format. The module uses @code{matplotlib}, a powerful and interactive
|
|
|
|
|
plotting package. It is capable of creating output files in several graphical
|
|
|
|
|
formats, including EPS, PDF, PS, PNG, and SVG.
|
|
|
|
|
|
|
|
|
|
Main features:
|
|
|
|
|
@itemize
|
|
|
|
|
@item Make plots interactively or using scripts
|
|
|
|
|
@item Show grayscale, colorscale, and 3-color RGB images of FITS files
|
|
|
|
|
@item Generate co-aligned FITS cubes to make 3-color RGB images
|
|
|
|
|
@item Make plots from FITS files with arbitrary WCS (e.g. position-velocity)
|
|
|
|
|
@item Slice multi-dimensional FITS cubes
|
|
|
|
|
@item Overlay any number of contour sets
|
|
|
|
|
@item Overlay markers with fully customizable symbols
|
|
|
|
|
@item Plot customizable shapes like circles, ellipses, and rectangles
|
|
|
|
|
@item Overlay ds9 region files
|
|
|
|
|
@item Overlay coordinate grids
|
|
|
|
|
@item Show colorbars, scalebars, and beams
|
|
|
|
|
@item Customize the appearance of labels and ticks
|
|
|
|
|
@item Hide, show, and remove different contour and marker layers
|
|
|
|
|
@item Pan, zoom, and save any view as a full publication-quality plot
|
|
|
|
|
@item Save plots as EPS, PDF, PS, PNG, and SVG
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2024-06-06 15:37:50 +00:00
|
|
|
|
(define-public python-asdf
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf")
|
2024-07-17 22:00:32 +00:00
|
|
|
|
(version "3.3.0")
|
2024-06-06 15:37:50 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "asdf" version))
|
|
|
|
|
(sha256
|
2024-07-17 22:00:32 +00:00
|
|
|
|
(base32 "0pwy8p3idz40a1z07d0lvvd0mwwya8g52wrp72frgpagjkvj3ska"))))
|
2024-06-06 15:37:50 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
2024-07-17 22:00:32 +00:00
|
|
|
|
#~(list "-p" "no:legacypath")
|
2024-06-06 15:37:50 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'patch-pypojrect-toml
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "pyproject.toml"
|
|
|
|
|
;; ImportError: Error importing plugin " no:legacypath": No
|
|
|
|
|
;; module named ' no:legacypath'
|
|
|
|
|
((".*:legacypath.*") "")
|
|
|
|
|
;; TypeError: Configuration.__init__() got an unexpected
|
|
|
|
|
;; keyword argument 'version_file'
|
|
|
|
|
(("version_file = \"asdf/_version.py\"") "")))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-fsspec
|
|
|
|
|
python-packaging
|
|
|
|
|
python-psutil
|
2024-07-17 22:00:32 +00:00
|
|
|
|
;; 3.3.0+ requries newer version of pytest, see
|
|
|
|
|
;; <https://github.com/asdf-format/asdf/issues/1804>.
|
|
|
|
|
python-pytest-8
|
2024-06-06 15:37:50 +00:00
|
|
|
|
python-pytest-doctestplus
|
|
|
|
|
python-pytest-remotedata
|
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf-standard
|
|
|
|
|
python-asdf-transform-schemas
|
|
|
|
|
python-attrs ;; for vendorized jsonschema
|
|
|
|
|
python-importlib-metadata
|
|
|
|
|
python-jmespath
|
|
|
|
|
python-lz4
|
|
|
|
|
python-numpy
|
|
|
|
|
python-pyyaml
|
|
|
|
|
python-semantic-version))
|
|
|
|
|
(home-page "https://github.com/asdf-format/asdf")
|
|
|
|
|
(synopsis "Python tools to handle ASDF files")
|
|
|
|
|
(description
|
|
|
|
|
"The Advanced Scientific Data Format (ASDF) is a next-generation
|
|
|
|
|
interchange format for scientific data. This package contains the Python
|
|
|
|
|
implementation of the ASDF Standard.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-06-06 22:19:31 +00:00
|
|
|
|
(define-public python-asdf-astropy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-astropy")
|
|
|
|
|
(version "0.6.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "asdf-astropy" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1ipjpjiirycj2npicbp39ka7db61vx45j8dm2iis71g5l1rzkblp"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto")
|
|
|
|
|
#:phases #~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'set-home-env
|
|
|
|
|
(lambda _ (setenv "HOME" "/tmp"))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-coverage
|
|
|
|
|
python-h5py
|
|
|
|
|
python-pandas
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-scipy
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf
|
|
|
|
|
python-asdf-coordinates-schemas
|
|
|
|
|
python-asdf-transform-schemas
|
|
|
|
|
python-astropy
|
|
|
|
|
python-numpy
|
|
|
|
|
python-packaging))
|
|
|
|
|
(home-page "https://github.com/astropy/asdf-astropy")
|
|
|
|
|
(synopsis "ASDF serialization support for astropy")
|
|
|
|
|
(description
|
|
|
|
|
"This package includes plugins that provide ASDF serialization support for
|
|
|
|
|
Astropy objects.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-06-06 22:07:58 +00:00
|
|
|
|
(define-public python-astroalign
|
|
|
|
|
(package
|
|
|
|
|
(name "python-astroalign")
|
|
|
|
|
(version "2.5.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
;; There are no tests in the PyPI tarball.
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/quatrope/astroalign")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1kr5cszcxvrdbksy7mvv3ps1h1jzrn4yamfr6x7whkbi6bpqf7xp"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-ccdproc
|
|
|
|
|
python-pillow
|
|
|
|
|
python-pytest))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-bottleneck
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-scipy
|
|
|
|
|
python-sep))
|
|
|
|
|
(home-page "https://astroalign.readthedocs.io/")
|
|
|
|
|
(synopsis "Astrometric Alignment of Images")
|
|
|
|
|
(description
|
|
|
|
|
"ASTROALIGN is a python module that will try to align two stellar
|
|
|
|
|
astronomical images, especially when there is no WCS information available.")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2023-07-03 15:43:17 +00:00
|
|
|
|
(define-public python-astroml
|
|
|
|
|
(package
|
|
|
|
|
(name "python-astroml")
|
|
|
|
|
(version "1.0.2.post1")
|
|
|
|
|
(source (origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "astroML" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
|
|
|
|
"14g2mcd5qdr3nn7icvjs84bjvx17l9glx81sbbna6v53i1x8l625"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
2024-02-15 16:25:25 +00:00
|
|
|
|
'(list "--ignore-glob=examples/*"
|
|
|
|
|
;; Disable tests which are not compatible with Astropy 6.0.0, see
|
|
|
|
|
;; <https://github.com/astroML/astroML/issues/273>.
|
|
|
|
|
"--ignore=astroML/density_estimation/tests/test_bayesian_blocks.py"
|
|
|
|
|
"--ignore=astroML/density_estimation/tests/test_bayesian_blocks.py"
|
|
|
|
|
"--ignore=astroML/density_estimation/tests/test_hist_binwidth.py"
|
|
|
|
|
"--ignore=astroML/density_estimation/tests/test_hist_binwidth.py")
|
2023-07-03 15:43:17 +00:00
|
|
|
|
#:phases
|
|
|
|
|
'(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'patch-build-system
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "setup.cfg"
|
|
|
|
|
;; Do not error out on deprecations
|
|
|
|
|
((" error::DeprecationWarning.*") "")
|
|
|
|
|
;; Do not test examples
|
|
|
|
|
(("testspaths = astroML doc examples")
|
|
|
|
|
"testspaths = astroML"))))
|
2024-01-15 16:28:12 +00:00
|
|
|
|
(add-after 'unpack 'matplotlib-compatibility
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "astroML/plotting/tools.py"
|
|
|
|
|
(("^( *)ax.(lines|patches|tables|artists|images).clear.*" _ indent type)
|
|
|
|
|
(string-append indent "for art in ax." type ":\n"
|
|
|
|
|
indent " art.remove()\n")))))
|
|
|
|
|
;; See commit e1c779de1f0ce4cb499dbda6c23d14f76b98e430
|
|
|
|
|
(add-after 'unpack 'scipy-compatibility
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "astroML/dimensionality/iterative_pca.py"
|
|
|
|
|
(("sym_pos=True") "assume_a=\"pos\""))))
|
2023-07-03 15:43:17 +00:00
|
|
|
|
(add-before 'check 'pre-check
|
|
|
|
|
;; Some tests need this
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
|
|
|
|
(propagated-inputs (list python-astropy python-matplotlib python-numpy
|
|
|
|
|
python-scikit-learn python-scipy))
|
|
|
|
|
(native-inputs (list python-pytest-astropy-header python-pytest-cov
|
|
|
|
|
python-pytest-doctestplus python-pytest-remotedata))
|
|
|
|
|
(home-page "https://astroml.org")
|
|
|
|
|
(synopsis "Tools for machine learning and data mining in astronomy")
|
|
|
|
|
(description "This package provides tools for machine learning and data
|
|
|
|
|
mining in astronomy.")
|
|
|
|
|
(license license:bsd-2)))
|
|
|
|
|
|
2024-06-06 22:11:22 +00:00
|
|
|
|
(define-public python-extinction
|
|
|
|
|
(package
|
|
|
|
|
(name "python-extinction")
|
|
|
|
|
(version "0.4.6")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch) ; No tests in PyPI
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/kbarbary/extinction")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1adxq926jd469mxm6llvsljgf2jqb06905h61i9qzc7m2yrm4wga"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags #~(list "test.py")))
|
|
|
|
|
(native-inputs (list python-cython python-pytest))
|
|
|
|
|
(propagated-inputs (list python-numpy))
|
|
|
|
|
(home-page "http://github.com/kbarbary/extinction")
|
|
|
|
|
(synopsis "Fast interstellar dust extinction laws")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a cython-optimized implementations of empirical dust
|
|
|
|
|
exitinction laws found in the literature.")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2021-09-29 08:47:39 +00:00
|
|
|
|
(define-public python-fitsio
|
|
|
|
|
(package
|
|
|
|
|
(name "python-fitsio")
|
2024-06-15 08:40:08 +00:00
|
|
|
|
(version "1.2.4")
|
2021-09-29 08:47:39 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "fitsio" version))
|
|
|
|
|
(sha256
|
2024-06-15 08:40:08 +00:00
|
|
|
|
(base32 "0y7n7wh73ha6439djrhwmqbvgpagrdgaasbrikvw2zb5qx3y6zym"))
|
2021-09-29 08:47:39 +00:00
|
|
|
|
(modules '((guix build utils)))
|
|
|
|
|
(snippet
|
2023-09-07 22:32:18 +00:00
|
|
|
|
;; Remove the bundled cfitsio. When update the package check the
|
|
|
|
|
;; current bundled version.
|
2023-05-24 21:51:44 +00:00
|
|
|
|
#~(begin
|
2024-06-15 08:40:08 +00:00
|
|
|
|
(delete-file-recursively "cfitsio-4.4.1-20240617")
|
2023-05-24 21:51:44 +00:00
|
|
|
|
(substitute* "MANIFEST.in"
|
2024-06-15 08:40:08 +00:00
|
|
|
|
(("recursive-include cfitsio-4.4.0.*$\n") ""))))))
|
2023-07-26 23:15:39 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2021-09-29 08:47:39 +00:00
|
|
|
|
(arguments
|
2023-05-24 21:51:44 +00:00
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2023-09-07 22:32:18 +00:00
|
|
|
|
(add-before 'build 'set-env
|
2023-05-24 21:51:44 +00:00
|
|
|
|
(lambda _
|
2023-09-07 22:32:18 +00:00
|
|
|
|
(setenv "FITSIO_USE_SYSTEM_FITSIO" "True")
|
|
|
|
|
(setenv "FITSIO_SYSTEM_FITSIO_INCLUDEDIR"
|
|
|
|
|
(string-append
|
|
|
|
|
#$(this-package-input "cfitsio") "/include"))
|
|
|
|
|
(setenv "FITSIO_SYSTEM_FITSIO_LIBDIR"
|
|
|
|
|
(string-append
|
|
|
|
|
#$(this-package-input "cfitsio") "/lib"))))
|
2023-07-26 23:15:39 +00:00
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
2023-07-26 23:15:38 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest))
|
|
|
|
|
(inputs
|
2023-09-07 22:32:18 +00:00
|
|
|
|
(list curl cfitsio zlib))
|
2021-09-29 08:47:39 +00:00
|
|
|
|
(propagated-inputs
|
2023-07-26 23:15:38 +00:00
|
|
|
|
(list python-numpy))
|
2021-09-29 08:47:39 +00:00
|
|
|
|
(home-page "https://github.com/esheldon/fitsio")
|
|
|
|
|
(synopsis
|
|
|
|
|
"Python library to read from and write to FITS files")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a Python library for reading from and writing
|
|
|
|
|
to @acronym{FITS, Flexible Image Transport System} files using the
|
|
|
|
|
CFITSIO library. Among other things, it can
|
|
|
|
|
|
|
|
|
|
@itemize
|
|
|
|
|
@item read and write image, binary, and ascii table extensions;
|
|
|
|
|
|
|
|
|
|
@item read arbitrary subsets of tables in a lazy manner;
|
|
|
|
|
|
|
|
|
|
@item query the rows and columns of a table;
|
|
|
|
|
|
|
|
|
|
@item read and write header keywords;
|
|
|
|
|
|
|
|
|
|
@item read and write Gzip files.
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:gpl2+)))
|
|
|
|
|
|
2023-07-03 15:08:11 +00:00
|
|
|
|
(define-public python-gatspy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-gatspy")
|
|
|
|
|
(version "0.3")
|
2024-04-03 16:43:35 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "gatspy" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1gw2z6x8nikvnw2gkdl70gr81cwczd1pd7v8ry2kjn6k4kssrfav"))))
|
2023-07-03 15:08:11 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
2024-04-03 16:43:35 +00:00
|
|
|
|
;; These tests require internet access
|
|
|
|
|
#~(list "-k" "not test_download_data.py")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
;; Tests need this
|
|
|
|
|
(add-before 'check 'set-HOME
|
|
|
|
|
(lambda _ (setenv "HOME" "/tmp"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astroml
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy
|
|
|
|
|
python-supersmoother))
|
2023-07-03 15:08:11 +00:00
|
|
|
|
(native-inputs (list python-pytest python-nose python-setuptools-scm))
|
|
|
|
|
(home-page "https://github.com/astroml/gatspy")
|
|
|
|
|
(synopsis "General tools for astronomical time series in Python")
|
2024-04-03 16:43:35 +00:00
|
|
|
|
(description
|
|
|
|
|
"This package provides general tools for astronomical time series in
|
|
|
|
|
Python.")
|
2023-07-03 15:08:11 +00:00
|
|
|
|
(license license:bsd-2)))
|
|
|
|
|
|
2024-02-14 14:56:39 +00:00
|
|
|
|
(define-public python-ginga
|
|
|
|
|
(package
|
|
|
|
|
(name "python-ginga")
|
2024-06-11 20:48:55 +00:00
|
|
|
|
(version "5.1.0")
|
2024-02-14 14:56:39 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "ginga" version))
|
|
|
|
|
(sha256
|
2024-06-11 20:48:55 +00:00
|
|
|
|
(base32 "0c6vpcz59x889z8ggq6r5ci9cf10m7r9h262r6chx31mzdr010wf"))))
|
2024-02-14 14:56:39 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2024-04-03 15:59:08 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'relax-requirements
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "setup.cfg"
|
|
|
|
|
;; packaging>=23.1
|
2024-04-03 16:56:40 +00:00
|
|
|
|
((">=23.1") ">=21.3"))))
|
|
|
|
|
(add-before 'check 'set-home
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Relax matplotlib warning: ... because the default path
|
|
|
|
|
;; (/homeless-shelter/.config/matplotlib) is not a writable
|
|
|
|
|
;; directory ...
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
2024-02-14 14:56:39 +00:00
|
|
|
|
(propagated-inputs
|
2024-04-03 15:59:08 +00:00
|
|
|
|
(list opencv
|
2024-02-14 14:56:39 +00:00
|
|
|
|
python-astropy
|
|
|
|
|
python-astroquery
|
|
|
|
|
python-dateutil
|
2024-04-03 15:59:08 +00:00
|
|
|
|
python-exif-read
|
|
|
|
|
python-fitsio
|
2024-02-14 14:56:39 +00:00
|
|
|
|
python-magic
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
2024-04-03 15:59:08 +00:00
|
|
|
|
python-packaging
|
2024-02-14 14:56:39 +00:00
|
|
|
|
python-photutils
|
|
|
|
|
python-pillow
|
2024-04-03 15:59:08 +00:00
|
|
|
|
python-pyyaml
|
2024-02-14 14:56:39 +00:00
|
|
|
|
python-qtpy
|
2024-04-03 15:59:08 +00:00
|
|
|
|
python-scipy
|
|
|
|
|
python-tomli))
|
2024-02-14 14:56:39 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-attrs
|
|
|
|
|
python-docutils
|
|
|
|
|
python-pytest-astropy
|
2024-04-03 15:59:08 +00:00
|
|
|
|
python-pytest-astropy-header
|
2024-02-14 14:56:39 +00:00
|
|
|
|
python-tornado))
|
|
|
|
|
(home-page "https://ejeschke.github.io/ginga/")
|
|
|
|
|
(synopsis "Scientific image viewer and toolkit for FITS files")
|
|
|
|
|
(description "Ginga is a toolkit designed for building viewers for
|
|
|
|
|
scientific image data in Python, visualizing 2D pixel data in numpy arrays. It
|
|
|
|
|
can view astronomical data such as contained in files based on the
|
|
|
|
|
FITS (Flexible Image Transport System) file format. It is written and is
|
|
|
|
|
maintained by software engineers at the National Astronomical Observatory of
|
|
|
|
|
Japan (NAOJ), the Space Telescope Science Institute (STScI), and other
|
|
|
|
|
contributing entities.
|
|
|
|
|
|
|
|
|
|
The Ginga toolkit centers around an image display object which supports zooming
|
|
|
|
|
and panning, color and intensity mapping, a choice of several automatic cut
|
|
|
|
|
levels algorithms and canvases for plotting scalable geometric forms. In
|
|
|
|
|
addition to this widget, a general purpose \"reference\" FITS viewer is
|
|
|
|
|
provided, based on a plugin framework. A fairly complete set of standard plugins
|
|
|
|
|
are provided for features that we expect from a modern FITS viewer: panning and
|
|
|
|
|
zooming windows, star catalog access, cuts, star pick/FWHM, thumbnails, etc.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
|
|
|
|
(define-public ginga-qt5
|
|
|
|
|
(package/inherit python-ginga
|
|
|
|
|
(name "ginga-qt5")
|
|
|
|
|
(inputs
|
|
|
|
|
(modify-inputs (package-inputs python-ginga)
|
|
|
|
|
(prepend python-pyqt)))
|
|
|
|
|
(synopsis "Qt5 image viewer build based on python-ginga library")))
|
|
|
|
|
|
2024-07-15 20:13:18 +00:00
|
|
|
|
(define-public python-glue-core
|
|
|
|
|
(package
|
|
|
|
|
(name "python-glue-core")
|
|
|
|
|
(version "1.21.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "glue_core" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1xms896ds70sbym1cr5lrbjl4i8vixy3mcc6qsg1b3ppvky76vmn"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list ;; python-astrodendro ; optional, not packed
|
|
|
|
|
python-astropy
|
|
|
|
|
python-dill
|
|
|
|
|
python-echo
|
|
|
|
|
python-fast-histogram
|
|
|
|
|
python-ipython
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-mpl-scatter-density
|
|
|
|
|
python-numpy
|
|
|
|
|
python-openpyxl
|
|
|
|
|
python-pandas
|
|
|
|
|
;; python-pyavm ; optional, not packed
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-scipy
|
|
|
|
|
python-setuptools
|
|
|
|
|
python-shapely
|
|
|
|
|
python-spectral-cube
|
|
|
|
|
python-xlrd))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-h5py
|
|
|
|
|
python-objgraph
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-cov
|
|
|
|
|
python-pytest-mpl
|
|
|
|
|
python-setuptools
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(home-page "http://glueviz.org")
|
|
|
|
|
(synopsis "Multidimensional data visualization project")
|
|
|
|
|
(description
|
|
|
|
|
"Glue is a python project to link visualizations of scientific datasets
|
|
|
|
|
across many files.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-07-18 20:09:35 +00:00
|
|
|
|
(define-public python-sncosmo
|
|
|
|
|
(package
|
|
|
|
|
(name "python-sncosmo")
|
|
|
|
|
(version "2.11.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "sncosmo" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0nmhrvaw22zxpmykl70a91mc88pxmw0x5fdxjiz3hdzkdbqrg0x9"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
;; Disable tests requireing remote access to download test data.
|
|
|
|
|
#~(list
|
|
|
|
|
"-k" (string-append "not test_megacampsf_bandpass"
|
|
|
|
|
" and not test_builtins_remote_aa"
|
|
|
|
|
" and not test_builtins_remote_nm"
|
|
|
|
|
" and not test_builtins_remote_um"
|
|
|
|
|
" and not test_builtins_remote_wfc3"
|
|
|
|
|
" and not test_builtins_megacampsf"
|
|
|
|
|
" and not test_builtins_timeseries_ascii"
|
|
|
|
|
" and not test_builtins_timeseries_fits"
|
|
|
|
|
" and not test_builtins_salt2model"
|
|
|
|
|
" and not test_builtins_salt3model"
|
|
|
|
|
" and not test_builtins_2011fe"
|
|
|
|
|
" and not test_builtins_mlcs2k2"
|
|
|
|
|
" and not test_builtins_snemo"
|
|
|
|
|
" and not test_builtins_sugar"
|
|
|
|
|
" and not test_builtins_magsys_fits"
|
|
|
|
|
" and not test_builtins_magsys_csp"
|
|
|
|
|
" and not test_builtins_magsys_ab_b12"
|
|
|
|
|
" and not test_builtins_magsys_jla"
|
|
|
|
|
" and not test_csp_magsystem"
|
|
|
|
|
" and not test_compositemagsystem_band_error"
|
|
|
|
|
" and not test_G10"
|
|
|
|
|
" and not test_C11"
|
|
|
|
|
" and not test_salt2source_timeseries_vs_snfit"
|
|
|
|
|
" and not test_salt2source_rcov_vs_snfit"
|
|
|
|
|
" and not test_bandflux"
|
|
|
|
|
" and not test_bandflux_multi"
|
|
|
|
|
" and not test_bandflux_zpsys"
|
|
|
|
|
" and not test_bandfluxcov"
|
|
|
|
|
" and not test_bandmag"
|
|
|
|
|
" and not test_sugarsource"))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'relax-requirements
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "setup.cfg"
|
|
|
|
|
;; pyyaml>=6.0.1
|
|
|
|
|
(("6.0.1") "6.0"))))
|
|
|
|
|
(add-before 'check 'prepare-test-environment
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" "/tmp")
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-extinction
|
|
|
|
|
python-looseversion
|
|
|
|
|
python-numpy
|
|
|
|
|
python-pyyaml
|
|
|
|
|
python-scipy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list ;; python-iminuit ; not packed, optional
|
|
|
|
|
python-cython
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest-cov))
|
|
|
|
|
(home-page "https://sncosmo.readthedocs.org")
|
|
|
|
|
(synopsis "Package for supernova cosmology based on astropy")
|
|
|
|
|
(description
|
|
|
|
|
"SNCosmo is a Python library for supernova cosmology analysis. It aims
|
|
|
|
|
to make such analysis both as flexible and clear as possible.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2016-08-30 19:08:23 +00:00
|
|
|
|
(define-public wcslib
|
|
|
|
|
(package
|
|
|
|
|
(name "wcslib")
|
2023-12-19 19:22:02 +00:00
|
|
|
|
(version "8.2.2")
|
2016-08-30 19:08:23 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
2023-07-02 00:00:01 +00:00
|
|
|
|
(uri (string-append "https://www.atnf.csiro.au/people/mcalabre/WCS/"
|
|
|
|
|
"wcslib-" version ".tar.bz2"))
|
2016-08-30 19:08:23 +00:00
|
|
|
|
(sha256
|
2023-12-19 19:22:02 +00:00
|
|
|
|
(base32 "0cvqppjf7gk0f3rs9cc46h5fffv2l8ylrb234r9fbx0px0525632"))
|
2023-10-22 16:40:49 +00:00
|
|
|
|
(snippet
|
|
|
|
|
#~(begin (use-modules (guix build utils))
|
|
|
|
|
(delete-file-recursively "C/flexed")))))
|
2016-08-30 19:08:23 +00:00
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
2022-12-11 22:25:43 +00:00
|
|
|
|
(list
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list (string-append "--with-cfitsiolib="
|
|
|
|
|
#$(this-package-input "cfitsio") "/lib")
|
|
|
|
|
(string-append "--with-cfitsioinc="
|
|
|
|
|
#$(this-package-input "cfitsio") "/include"))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(delete 'install-license-files) ; installed by ‘make install’
|
|
|
|
|
(add-before 'configure 'patch-/bin/sh
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "makedefs.in"
|
|
|
|
|
(("/bin/sh") "sh")))))))
|
|
|
|
|
;; TODO: Fix build with gfortran and pack missing optional pgplot.
|
|
|
|
|
;; (inputs (list gfortran pgplot))
|
2023-10-22 16:40:49 +00:00
|
|
|
|
(inputs
|
|
|
|
|
(list cfitsio))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list flex))
|
2017-09-20 12:02:19 +00:00
|
|
|
|
(home-page "https://www.atnf.csiro.au/people/mcalabre/WCS")
|
2016-08-31 18:49:57 +00:00
|
|
|
|
(synopsis "Library which implements the FITS WCS standard")
|
2018-01-10 14:59:00 +00:00
|
|
|
|
(description "The FITS \"World Coordinate System\" (@dfn{WCS}) standard
|
|
|
|
|
defines keywords and usage that provide for the description of astronomical
|
|
|
|
|
coordinate systems in a @dfn{FITS} (Flexible Image Transport System) image
|
|
|
|
|
header.")
|
2016-08-30 19:08:23 +00:00
|
|
|
|
(license license:lgpl3+)))
|
2016-08-30 19:09:56 +00:00
|
|
|
|
|
2023-09-17 19:12:39 +00:00
|
|
|
|
;;; The version is required for julia-wcs-jll and julia-wcs. They do not
|
|
|
|
|
;;; support version higher than 7.x.
|
|
|
|
|
(define-public wcslib-7.12
|
|
|
|
|
(package
|
|
|
|
|
(inherit wcslib)
|
|
|
|
|
(version "7.12")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (string-append "https://www.atnf.csiro.au/people/mcalabre/WCS/"
|
|
|
|
|
"wcslib-" version ".tar.bz2"))
|
|
|
|
|
(sha256
|
2023-10-22 16:45:21 +00:00
|
|
|
|
(base32 "1m3bx6gh5w3c7vvsqcki0x20mg8lilg13m0i8nh7za89w58dxy4w"))
|
|
|
|
|
(snippet
|
|
|
|
|
#~(begin (use-modules (guix build utils))
|
|
|
|
|
(delete-file-recursively "C/flexed")))))
|
2023-09-17 19:12:39 +00:00
|
|
|
|
(properties '((hidden? . #t)))))
|
|
|
|
|
|
2023-07-10 23:39:20 +00:00
|
|
|
|
(define-public glnemo2
|
|
|
|
|
(package
|
|
|
|
|
(name "glnemo2")
|
|
|
|
|
(version "1.21.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://gitlab.lam.fr/jclamber/glnemo2")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1jmmxszh8d2jmfghig36nhykff345mqnpssfa64d0r7l9cnfp3cn"))))
|
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:tests? #f ; No test target
|
|
|
|
|
#:configure-flags #~(list "CPPFLAGS=-fcommon")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'patch-libraries-paths
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "CMakeLists.txt"
|
|
|
|
|
;; There is some not straightforward logic on how to set
|
|
|
|
|
;; the installation prefix for the project; inherit it
|
|
|
|
|
;; from the build-system default flags.
|
|
|
|
|
(("CMAKE_INSTALL_PREFIX \"/usr\"")
|
|
|
|
|
"CMAKE_INSTALL_PREFIX")
|
|
|
|
|
(("/usr/include/CCfits")
|
|
|
|
|
(string-append
|
|
|
|
|
#$(this-package-input "ccfits") "/include/CCfits"))
|
|
|
|
|
(("/usr/include/tirpc")
|
|
|
|
|
(string-append
|
|
|
|
|
#$(this-package-input "libtirpc") "/include/tirpc"))
|
|
|
|
|
;; It tries to detect library in two "predictable" paths,
|
|
|
|
|
;; required during the link phase.
|
|
|
|
|
(("/usr/lib64/libtirpc.so")
|
|
|
|
|
(string-append
|
|
|
|
|
#$(this-package-input "libtirpc") "/lib/libtirpc.so"))))))))
|
|
|
|
|
(inputs
|
|
|
|
|
(list ccfits
|
|
|
|
|
cfitsio
|
|
|
|
|
glm
|
|
|
|
|
glu
|
|
|
|
|
hdf5
|
|
|
|
|
libtirpc
|
|
|
|
|
qtbase-5
|
|
|
|
|
zlib))
|
2023-10-27 22:14:44 +00:00
|
|
|
|
(home-page "https://projets.lam.fr/projects/glnemo2/wiki/Wiki")
|
2023-07-10 23:39:20 +00:00
|
|
|
|
(synopsis "3D interactive visualization program for n-body like particles")
|
|
|
|
|
(description
|
|
|
|
|
"GLNEMO2 is an interactive 3D visualization program which displays
|
|
|
|
|
particles positions of the different components (gas, stars, disk, dark
|
|
|
|
|
matter halo, bulge) of an N-body snapshot. It is a tool for running
|
|
|
|
|
N-body simulations from isolated galaxies to cosmological simulations.
|
|
|
|
|
It has a graphical user interface (based on QT 5.X API), uses a fast
|
|
|
|
|
3D engine (OPenGL and GLSL), and is generic with the possibility to load
|
|
|
|
|
different kinds of input files.")
|
|
|
|
|
(license license:cecill)))
|
|
|
|
|
|
2016-08-30 19:09:56 +00:00
|
|
|
|
(define-public gnuastro
|
|
|
|
|
(package
|
|
|
|
|
(name "gnuastro")
|
2024-02-05 15:40:35 +00:00
|
|
|
|
(version "0.22")
|
2016-08-30 19:09:56 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (string-append "mirror://gnu/gnuastro/gnuastro-"
|
2018-12-29 18:13:48 +00:00
|
|
|
|
version ".tar.lz"))
|
2016-08-30 19:09:56 +00:00
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-02-05 15:40:35 +00:00
|
|
|
|
"15rljx1mx9dyvni17qpj7y9gv086cvmjf9f5j34m1pbiyn989fqz"))))
|
2020-05-21 13:51:38 +00:00
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
'(#:configure-flags '("--disable-static")))
|
2016-08-30 19:09:56 +00:00
|
|
|
|
(inputs
|
2022-03-20 06:49:28 +00:00
|
|
|
|
(list cfitsio
|
2023-02-27 00:11:35 +00:00
|
|
|
|
curl
|
2022-03-20 06:49:28 +00:00
|
|
|
|
gsl
|
|
|
|
|
libgit2
|
|
|
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libjpeg-turbo
|
|
|
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libtiff
|
|
|
|
|
wcslib
|
|
|
|
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zlib))
|
2018-12-29 18:13:48 +00:00
|
|
|
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(native-inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list libtool lzip))
|
2017-03-29 22:48:16 +00:00
|
|
|
|
(home-page "https://www.gnu.org/software/gnuastro/")
|
2017-06-08 21:33:31 +00:00
|
|
|
|
(synopsis "Astronomy utilities")
|
2016-08-30 19:09:56 +00:00
|
|
|
|
(description "The GNU Astronomy Utilities (Gnuastro) is a suite of
|
|
|
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|
programs for the manipulation and analysis of astronomical data.")
|
|
|
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(license license:gpl3+)))
|
2017-03-02 05:58:34 +00:00
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|
|
|
|
2023-03-27 08:46:49 +00:00
|
|
|
|
(define-public phd2
|
|
|
|
|
(package
|
|
|
|
|
(name "phd2")
|
2024-01-27 15:13:00 +00:00
|
|
|
|
(version "2.6.13")
|
2023-03-27 08:46:49 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/OpenPHDGuiding/phd2")
|
|
|
|
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(commit (string-append "v" version))))
|
|
|
|
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(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2024-01-27 15:13:00 +00:00
|
|
|
|
(base32 "0shr50ngi7dliijy8fxrd1c4hzkm4vp4m0a4m0d9gvrx56vzyx0s"))
|
2023-03-27 08:46:49 +00:00
|
|
|
|
(modules '((guix build utils)
|
|
|
|
|
(ice-9 ftw)
|
|
|
|
|
(srfi srfi-26)))
|
|
|
|
|
(snippet
|
|
|
|
|
#~(begin
|
|
|
|
|
;; XXX: 'delete-all-but' is copied from the turbovnc package.
|
|
|
|
|
(define (delete-all-but directory . preserve)
|
|
|
|
|
(define (directory? x)
|
|
|
|
|
(and=> (stat x #f)
|
|
|
|
|
(compose (cut eq? 'directory <>) stat:type)))
|
|
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|
|
(with-directory-excursion directory
|
|
|
|
|
(let* ((pred
|
|
|
|
|
(negate (cut member <> (append '("." "..") preserve))))
|
|
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|
|
(items (scandir "." pred)))
|
|
|
|
|
(for-each (lambda (item)
|
|
|
|
|
(if (directory? item)
|
|
|
|
|
(delete-file-recursively item)
|
|
|
|
|
(delete-file item)))
|
|
|
|
|
items))))
|
|
|
|
|
(delete-all-but "thirdparty" "thirdparty.cmake")))))
|
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list #:configure-flags #~(list "-DOPENSOURCE_ONLY=yes"
|
|
|
|
|
"-DUSE_SYSTEM_CFITSIO=yes"
|
|
|
|
|
"-DUSE_SYSTEM_EIGEN3=yes"
|
|
|
|
|
"-DUSE_SYSTEM_GTEST=yes"
|
|
|
|
|
"-DUSE_SYSTEM_LIBINDI=yes"
|
|
|
|
|
"-DUSE_SYSTEM_LIBUSB=yes")))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list gettext-minimal
|
|
|
|
|
googletest
|
|
|
|
|
perl
|
|
|
|
|
pkg-config
|
|
|
|
|
python))
|
|
|
|
|
(inputs
|
|
|
|
|
(list cfitsio
|
|
|
|
|
curl
|
|
|
|
|
eigen
|
|
|
|
|
gtk+
|
|
|
|
|
indi
|
|
|
|
|
libnova
|
|
|
|
|
libusb
|
|
|
|
|
wxwidgets
|
|
|
|
|
zlib))
|
|
|
|
|
(home-page "https://openphdguiding.org")
|
|
|
|
|
(synopsis "Teleskope guiding software")
|
|
|
|
|
(description
|
|
|
|
|
"PHD2 is the enhanced, second generation version of the PHD guiding software
|
|
|
|
|
from Stark Labs.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2021-01-24 11:16:36 +00:00
|
|
|
|
(define-public sextractor
|
|
|
|
|
(package
|
|
|
|
|
(name "sextractor")
|
2023-07-26 23:15:27 +00:00
|
|
|
|
(version "2.28.0")
|
2021-01-24 11:16:36 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/astromatic/sextractor")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2023-07-26 23:15:27 +00:00
|
|
|
|
(base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j"))))
|
2021-01-24 11:16:36 +00:00
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing
|
|
|
|
|
;; due to missing shared library which required on configure phase. Switch
|
|
|
|
|
;; build to use `openblas' instead. It requires FFTW with single precision
|
|
|
|
|
;; `fftwf'.
|
|
|
|
|
(arguments
|
2023-07-26 23:15:28 +00:00
|
|
|
|
(list
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list
|
|
|
|
|
"--enable-openblas"
|
|
|
|
|
(string-append "--with-cfitsio-incdir="
|
|
|
|
|
#$(this-package-input "cfitsio") "/include")
|
|
|
|
|
(string-append "--with-cfitsio-libdir="
|
|
|
|
|
#$(this-package-input "cfitsio") "/lib")
|
|
|
|
|
(string-append "--with-fftw-incdir="
|
|
|
|
|
#$(this-package-input "fftwf") "/include")
|
|
|
|
|
(string-append "--with-fftw-libdir="
|
|
|
|
|
#$(this-package-input "fftwf") "/lib")
|
|
|
|
|
(string-append "--with-openblas-incdir="
|
|
|
|
|
#$(this-package-input "openblas") "/include")
|
|
|
|
|
(string-append "--with-openblas-libdir="
|
|
|
|
|
#$(this-package-input "openblas") "/lib"))))
|
2021-01-24 11:16:36 +00:00
|
|
|
|
(native-inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list autoconf automake libtool))
|
2021-01-24 11:16:36 +00:00
|
|
|
|
(inputs
|
2023-07-26 23:15:28 +00:00
|
|
|
|
(list cfitsio fftwf openblas))
|
gnu: Use HTTPS package home pages wherever possible.
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise.
* gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]:
Likewise.
* gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise.
* gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise.
* gnu/packages/astronomy.scm (casacore, sextractor, libnova)
(xplanet)[home-page]: Likewise.
* gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao)
(freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms)
(libmodplug, libxmp, xmp, sox, drc, gsm, gnaural)
(streamripper)[home-page]: Likewise.
* gnu/packages/authentication.scm (pamtester)[home-page]: Likewise.
* gnu/packages/backup.scm (grsync)[home-page]: Likewise.
* gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma)
(r-plgem)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1)
(bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard)
(java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools)
(snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip)
(libsbml)[home-page]: Likewise.
* gnu/packages/build-tools.scm (tup)[home-page]: Likewise.
* gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools)
(cd-discid)[home-page]: Likewise.
* gnu/packages/check.scm (cunit, python-nose)
(python-pyhamcrest)[home-page]: Likewise.
* gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise.
* gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise.
* gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise.
* gnu/packages/compression.scm (p7zip)[home-page]: Likewise.
* gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial)
(r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook)
(r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags)
(r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm)
(r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet)
(r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde)
(r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels)
(r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom)
(r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat)
(r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]:
Likewise.
* gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13)
(rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20)
(rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20)
(rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20)
(rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise.
* gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise.
* gnu/packages/curl.scm (curlpp)[home-page]: Likewise.
* gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger)
(libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers)
(soci)[home-page]: Likewise.
* gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise.
* gnu/packages/debug.scm (remake)[home-page]: Likewise.
* gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise.
* gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise.
* gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise.
* gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise.
* gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise.
* gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise.
* gnu/packages/electronics.scm (xoscope)[home-page]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu)
(emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel)
(emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc)
(emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap)
(emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+)
(emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise.
* gnu/packages/embedded.scm (sdcc)[home-page]: Likewise.
* gnu/packages/engineering.scm (asco, libngspice, libspnav)
(openctm)[home-page]: Likewise.
* gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise.
* gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]:
Likewise.
* gnu/packages/finance.scm (gbonds)[home-page]: Likewise.
* gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]:
Likewise.
* gnu/packages/fltk.scm (ntk)[home-page]: Likewise.
* gnu/packages/fonts.scm (font-terminus, font-tex-gyre)
(font-comic-neue)[home-page]: Likewise.
* gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]:
Likewise.
* gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave)
(python-myhdl)[home-page]: Likewise.
* gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise.
* gnu/packages/ftp.scm (weex)[home-page]: Likewise.
* gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc)
(eureka, plib)[home-page]: Likewise.
* gnu/packages/games.scm (abe, alex4, armagetronad, barony)
(foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally)
(cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki)
(quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks)
(flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise.
* gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise.
* gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise.
* gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish)
(workrave)[home-page]: Likewise.
* gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise.
* gnu/packages/graph.scm (mscgen)[home-page]: Likewise.
* gnu/packages/graphics.scm (assimp, alembic, ctl, agg)
(opencsg)[home-page]: Likewise.
* gnu/packages/graphviz.scm (gts)[home-page]: Likewise.
* gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise.
* gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise.
* gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-http-client-restricted)
(ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]:
Likewise.
* gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg)
(ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats)
(ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints)
(ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon)
(ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards)
(ghc-template-haskell, ghc-boot-th, ghc-binary-orphans)
(ghc-postgresql-simple)[home-page]: Likewise.
* gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise.
* gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise.
* gnu/packages/image-processing.scm (mia)[home-page]: Likewise.
* gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr)
(qiv)[home-page]: Likewise.
* gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib)
(sng, mtpaint)[home-page]: Likewise.
* gnu/packages/java-xml.scm (java-simple-xml, java-jaxp)
(java-apache-xml-commons-resolver)[home-page]: Likewise.
* gnu/packages/java.scm (java-cisd-base, java-cisd-args4j)
(java-hamcrest-core, java-jsr305, java-eclipse-osgi)
(java-eclipse-equinox-common, java-eclipse-core-jobs)
(java-eclipse-equinox-registry, java-eclipse-equinox-app)
(java-eclipse-equinox-preferences, java-eclipse-core-contenttype)
(java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq)
(java-cdi-api)[home-page]: Likewise.
* gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise.
* gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]:
Likewise.
* gnu/packages/kde-internet.scm (kget)[home-page]: Likewise.
* gnu/packages/kde-systemtools.scm (dolphin-plugins)
(konsole)[home-page]: Likewise.
* gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise.
* gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise.
* gnu/packages/lego.scm (nqc)[home-page]: Likewise.
* gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise.
* gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise.
* gnu/packages/libffi.scm (libffi)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]:
Likewise.
* gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise.
* gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools)
(kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise.
* gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]:
Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser)
(sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore)
(sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell)
(sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise.
* gnu/packages/lisp.scm (lush2)[home-page]: Likewise.
* gnu/packages/logging.scm (log4cpp)[home-page]: Likewise.
* gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]:
Likewise.
* gnu/packages/mail.scm (muchsync, procmail, sendmail)
(opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise.
* gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise.
* gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh)
(metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3)
(frama-c)[home-page]: Likewise.
* gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]:
Likewise.
* gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise.
* gnu/packages/monitoring.scm (python-whisper, python-carbon)
(hostscope)[home-page]: Likewise.
* gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321)
(lame)[home-page]: Likewise.
* gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise.
* gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol)
(portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot)
(schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2)
(shiru-lv2)[home-page]: Likewise.
* gnu/packages/ncurses.scm (stfl)[home-page]: Likewise.
* gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird)
(tunctl, traceroute)[home-page]: Likewise.
* gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise.
* gnu/packages/ntp.scm (openntpd)[home-page]: Likewise.
* gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib)
(ocaml-graph, cubicle)[home-page]: Likewise.
* gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise.
* gnu/packages/package-management.scm (xstow, modules)[home-page]:
Likewise.
* gnu/packages/parallel.scm (xjobs)[home-page]: Likewise.
* gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]:
Likewise.
* gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]:
Likewise.
* gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]:
Likewise.
* gnu/packages/plan9.scm (drawterm)[home-page]: Likewise.
* gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]:
Likewise.
* gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise.
* gnu/packages/profiling.scm (otf2)[home-page]: Likewise.
* gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise.
* gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-cssutils)
(python-translationstring)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml)
(python-docutils, python-pexpect, python-importlib-resources)
(python-simplegeneric, python-urwid, python-xlrd, python-xlwt)
(python-pyasn1, python-pythondialog, python-tftpy, python-random2)
(python-arcp, python-pyopengl, python-sortedcollections)
(python-sortedcontainers, python-yapsy, python-pydispatcher)
(python-posix-ipc)[home-page]: Likewise.
* gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise.
* gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise.
* gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise.
* gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise.
* gnu/packages/regex.scm (tre)[home-page]: Likewise.
* gnu/packages/rsync.scm (librsync)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox)
(ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise.
* gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise.
* gnu/packages/screen.scm (dtach)[home-page]: Likewise.
* gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise.
* gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise.
* gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise.
* gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]:
Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise.
* gnu/packages/speech.scm (espeak)[home-page]: Likewise.
* gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise.
* gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice)
(r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable)
(python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm)
(r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]:
Likewise.
* gnu/packages/swig.scm (swig)[home-page]: Likewise.
* gnu/packages/task-management.scm (wtime)[home-page]: Likewise.
* gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise.
* gnu/packages/terminals.scm (libtermkey, mlterm, libvterm)
(libvterm)[home-page]: Likewise.
* gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs)
(texlive-csplain, biber, texmaker)[home-page]: Likewise.
* gnu/packages/text-editors.scm (joe)[home-page]: Likewise.
* gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise.
* gnu/packages/tv.scm (tvtime)[home-page]: Likewise.
* gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise.
* gnu/packages/upnp.scm (libupnp)[home-page]: Likewise.
* gnu/packages/version-control.scm (cvs)[home-page]: Likewise.
* gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib)
(liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl)
(dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise.
* gnu/packages/virtualization.scm (bochs)[home-page]: Likewise.
* gnu/packages/w3m.scm (w3m)[home-page]: Likewise.
* gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi)
(tidy-html, htmlcxx)[home-page]: Likewise.
* gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise.
* gnu/packages/wv.scm (wv)[home-page]: Likewise.
* gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise.
* gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c)
(opensp)[home-page]: Likewise.
* gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
2023-02-12 00:00:00 +00:00
|
|
|
|
(home-page "https://www.astromatic.net/software/sextractor")
|
2021-01-24 11:16:36 +00:00
|
|
|
|
(synopsis "Extract catalogs of sources from astronomical images")
|
|
|
|
|
(description
|
|
|
|
|
"SExtractor is a program that builds a catalogue of objects from an
|
|
|
|
|
astronomical image. Although it is particularly oriented towards reduction of
|
|
|
|
|
large scale galaxy-survey data, it can perform reasonably well on moderately
|
|
|
|
|
crowded star fields.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2022-10-30 21:56:52 +00:00
|
|
|
|
(define-public siril
|
|
|
|
|
(package
|
|
|
|
|
(name "siril")
|
2024-06-18 09:07:54 +00:00
|
|
|
|
(version "1.2.3")
|
2022-10-30 21:56:52 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://gitlab.com/free-astro/siril")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-06-18 09:07:54 +00:00
|
|
|
|
"0gkd8w2bpwq4ibl3vawx008yrm5k6zlj77lp98fflffcf7cj8hr5"))
|
2022-10-30 21:56:52 +00:00
|
|
|
|
(file-name (git-file-name name version))))
|
|
|
|
|
(build-system meson-build-system)
|
|
|
|
|
(native-inputs (list cmake git glib libconfig pkg-config))
|
|
|
|
|
(inputs (list cfitsio
|
|
|
|
|
exiv2
|
2023-10-08 23:40:03 +00:00
|
|
|
|
ffms2
|
2022-10-30 21:56:52 +00:00
|
|
|
|
fftwf
|
|
|
|
|
gsl
|
|
|
|
|
gtk+
|
|
|
|
|
json-glib
|
2023-10-08 23:40:03 +00:00
|
|
|
|
libheif
|
2022-10-30 21:56:52 +00:00
|
|
|
|
libraw
|
|
|
|
|
librtprocess
|
|
|
|
|
opencv))
|
|
|
|
|
(home-page "https://siril.org/")
|
|
|
|
|
(synopsis "Image processing software for amateur astronomy")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides an astronomical image processing tool - SIRIL. It is
|
|
|
|
|
specially tailored for noise reduction and improving the signal/noise ratio of
|
|
|
|
|
an image from multiple captures, as required in astronomy. SIRIL can align
|
|
|
|
|
automatically or manually, stack and enhance pictures from various file formats,
|
|
|
|
|
even image sequence files (films and SER files). It works well with limited
|
|
|
|
|
system resources, like in embedded platforms, but is also very fast when run on
|
|
|
|
|
more powerful computers and provides conversion to FITS from a large number of
|
|
|
|
|
image formats.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2022-10-01 15:42:12 +00:00
|
|
|
|
(define-public splash
|
|
|
|
|
(package
|
|
|
|
|
(name "splash")
|
2024-03-05 21:48:25 +00:00
|
|
|
|
(version "3.10.3")
|
2022-10-01 15:42:12 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/danieljprice/splash")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-03-05 21:48:25 +00:00
|
|
|
|
"077s9if7fmccvhsbp0dhvyqcil46vpbgdm1y6qn6h34r8lfqj9z6"))
|
2022-10-01 15:42:12 +00:00
|
|
|
|
(file-name (git-file-name name version))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
;; FIXME: Tests failed
|
|
|
|
|
;; Issue submited upstream https://github.com/danieljprice/splash/issues/67
|
|
|
|
|
;;
|
|
|
|
|
;; make: *** No rule to make target 'test_interpolate3D.o', needed by 'test1'. Stop.
|
|
|
|
|
;;
|
|
|
|
|
(list #:tests? #f
|
|
|
|
|
#:parallel-build? #f ;parallel build fails
|
|
|
|
|
#:make-flags #~(list "SYSTEM=gfortran" "PREFIX="
|
|
|
|
|
(string-append "GIZA_DIR="
|
|
|
|
|
#$(this-package-input "giza"))
|
|
|
|
|
(string-append "DESTDIR="
|
|
|
|
|
#$output))
|
|
|
|
|
#:phases #~(modify-phases %standard-phases
|
|
|
|
|
(delete 'configure)
|
|
|
|
|
(add-before 'install 'create-install-dirrectories
|
|
|
|
|
(lambda _
|
|
|
|
|
(mkdir-p (string-append #$output "/bin")))))))
|
|
|
|
|
(native-inputs (list gfortran pkg-config perl python-wrapper))
|
|
|
|
|
(inputs (list cairo cfitsio giza))
|
|
|
|
|
(home-page "https://users.monash.edu.au/~dprice/splash/")
|
|
|
|
|
(synopsis
|
|
|
|
|
"Astrophysical visualisation tool for smoothed particle hydrodynamics")
|
|
|
|
|
(description
|
|
|
|
|
"SPLASH is visualisation tool for Smoothed Particle Hydrodynamics (SPH)
|
|
|
|
|
simulations in one, two and three dimensions, developed mainly for
|
|
|
|
|
astrophysics. It uses a command-line menu but data can be manipulated
|
|
|
|
|
interactively in the plotting window.")
|
|
|
|
|
(license license:gpl2+)))
|
|
|
|
|
|
2021-01-27 20:00:55 +00:00
|
|
|
|
(define-public skymaker
|
2024-07-15 20:26:15 +00:00
|
|
|
|
(package
|
|
|
|
|
(name "skymaker")
|
|
|
|
|
(version "3.10.5")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/astromatic/skymaker")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0kcy0lfm25gihahpr41ghhw3b8znzczzg9rrlkfih043h2pfsm5l"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list
|
|
|
|
|
"CPPFLAGS=-fcommon"
|
|
|
|
|
(string-append
|
|
|
|
|
"--with-fftw-libdir=" #$(this-package-input "fftwf") "/lib")
|
|
|
|
|
(string-append
|
|
|
|
|
"--with-fftw-incdir=" #$(this-package-input "fftwf") "/include"))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list autoconf automake libtool pkg-config))
|
|
|
|
|
(inputs
|
|
|
|
|
(list fftwf))
|
|
|
|
|
(home-page "https://www.astromatic.net/software/skymaker")
|
|
|
|
|
(synopsis "Astronomical image simulator")
|
|
|
|
|
(description
|
|
|
|
|
"SkyMaker is a program that simulates astronomical images. It accepts
|
2021-01-27 20:00:55 +00:00
|
|
|
|
object lists in ASCII generated by the Stuff program to produce realistic
|
2023-07-02 00:00:00 +00:00
|
|
|
|
astronomical fields. SkyMaker is part of the
|
|
|
|
|
@uref{https://www.astromatic.net/projects/efigi, EFIGI} development project.")
|
2024-07-15 20:26:15 +00:00
|
|
|
|
(license license:gpl3+)))
|
2021-01-27 20:00:55 +00:00
|
|
|
|
|
2021-02-16 22:51:19 +00:00
|
|
|
|
(define-public stackistry
|
|
|
|
|
(package
|
|
|
|
|
(name "stackistry")
|
|
|
|
|
(version "0.3.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/GreatAttractor/stackistry")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0rz29v33n0x0k40hv3v79ym5ylch1v0pbph4i21809gz2al5p7dq"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
2024-01-20 15:50:48 +00:00
|
|
|
|
(list
|
|
|
|
|
#:tests? #f ; No test target
|
|
|
|
|
#:make-flags
|
|
|
|
|
#~(list
|
|
|
|
|
(string-append
|
|
|
|
|
"SKRY_INCLUDE_PATH=" #$(this-package-input "libskry") "/include")
|
|
|
|
|
(string-append
|
|
|
|
|
"SKRY_LIB_PATH=-L" #$(this-package-input "libskry") "/lib")
|
|
|
|
|
(string-append
|
|
|
|
|
"LIBAV_INCLUDE_PATH=" #$(this-package-input "ffmpeg") "/include"))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
;; no configure and tests are provided
|
|
|
|
|
(delete 'configure)
|
|
|
|
|
(add-after 'unpack 'fix-paths
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "src/main.cpp"
|
|
|
|
|
(("\"\\.\\.\", \"lang\"")
|
|
|
|
|
"\"../share/stackistry\", \"lang\""))
|
|
|
|
|
(substitute* "src/utils.cpp"
|
|
|
|
|
(("\"\\.\\.\", \"icons\"")
|
|
|
|
|
"\"../share/stackistry\", \"icons\""))))
|
|
|
|
|
(replace 'install
|
|
|
|
|
;; The Makefile lacks an ‘install’ target.
|
|
|
|
|
(lambda _
|
|
|
|
|
(let* ((out #$output)
|
|
|
|
|
(bin (string-append out "/bin"))
|
|
|
|
|
(icons (string-append out "/share/stackistry/icons"))
|
|
|
|
|
(lang (string-append out "/share/stackistry/lang")))
|
|
|
|
|
(copy-recursively "bin" bin)
|
|
|
|
|
(copy-recursively "icons" icons)
|
|
|
|
|
(copy-recursively "lang" lang)))))))
|
2021-02-16 22:51:19 +00:00
|
|
|
|
(native-inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list pkg-config))
|
2024-01-20 15:50:48 +00:00
|
|
|
|
(inputs
|
|
|
|
|
(list gtkmm-3 libskry ffmpeg-4))
|
|
|
|
|
(home-page "https://github.com/GreatAttractor/stackistry")
|
|
|
|
|
(synopsis "Astronomical lucky imaging/image stacking tool")
|
|
|
|
|
(description
|
|
|
|
|
"Stackistry implements the lucky imaging principle of astronomical
|
2021-02-16 22:51:19 +00:00
|
|
|
|
imaging: creating a high-quality still image out of a series of many (possibly
|
|
|
|
|
thousands) low quality ones (blurred, deformed, noisy). The resulting image
|
|
|
|
|
stack typically requires post-processing, including sharpening (e.g. via
|
|
|
|
|
deconvolution). Such post-processing is not performed by Stackistry.")
|
2024-01-20 15:50:48 +00:00
|
|
|
|
(license license:gpl3+)))
|
2021-02-16 22:51:19 +00:00
|
|
|
|
|
2017-03-02 05:58:34 +00:00
|
|
|
|
(define-public stellarium
|
|
|
|
|
(package
|
|
|
|
|
(name "stellarium")
|
2024-07-01 21:30:38 +00:00
|
|
|
|
(version "24.2")
|
2019-06-22 20:16:44 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/Stellarium/stellarium")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
2019-06-22 20:16:44 +00:00
|
|
|
|
(sha256
|
2024-07-01 21:30:38 +00:00
|
|
|
|
(base32 "01iq1cxbhr3xknzpk4spflxj3msf9wk19b4lqlifi1pwaz18pb5n"))))
|
2017-03-02 05:58:34 +00:00
|
|
|
|
(build-system cmake-build-system)
|
gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
|
|
|
|
;; TODO: Complete documentation build and split into dedicated outputs.
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; FIXME: Tests keep failing on 100% when preparing test-suit for INDI.
|
|
|
|
|
#:tests? #f
|
|
|
|
|
#:test-target "test"
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list "-DENABLE_GPS=1"
|
|
|
|
|
;; TODO: Enable when all of the dependencies are availalbe for Qt6.
|
|
|
|
|
"-DENABLE_QT6=0"
|
|
|
|
|
"-DENABLE_TESTING=0"
|
|
|
|
|
(string-append "-DCMAKE_CXX_FLAGS=-isystem "
|
|
|
|
|
#$(this-package-input "qtserialport") "/include/qt5"))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'set-offscreen-display
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "QT_QPA_PLATFORM" "offscreen")
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
2017-03-03 10:29:41 +00:00
|
|
|
|
(inputs
|
2023-02-28 00:12:30 +00:00
|
|
|
|
(list calcmysky-qt5
|
|
|
|
|
gpsd
|
gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
|
|
|
|
indi
|
|
|
|
|
libnova
|
2024-01-13 17:03:58 +00:00
|
|
|
|
nlopt
|
gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
|
|
|
|
openssl
|
|
|
|
|
qtbase-5
|
|
|
|
|
qtcharts
|
2024-07-10 15:19:07 +00:00
|
|
|
|
qtlocation-5
|
2022-07-17 23:00:48 +00:00
|
|
|
|
qtmultimedia-5
|
gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
|
|
|
|
qtpositioning
|
2021-12-13 16:18:24 +00:00
|
|
|
|
qtscript
|
2024-03-18 16:02:40 +00:00
|
|
|
|
qtserialport-5
|
gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
|
|
|
|
qttranslations
|
|
|
|
|
qtwebengine-5
|
2023-02-28 00:12:30 +00:00
|
|
|
|
qxlsx-qt5
|
2021-12-13 16:18:24 +00:00
|
|
|
|
zlib))
|
2017-03-03 10:29:41 +00:00
|
|
|
|
(native-inputs
|
gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
|
|
|
|
(list doxygen
|
|
|
|
|
gettext-minimal
|
|
|
|
|
graphviz
|
|
|
|
|
mesa
|
|
|
|
|
perl
|
|
|
|
|
python-wrapper
|
|
|
|
|
qttools-5))
|
2018-08-16 00:14:47 +00:00
|
|
|
|
(home-page "https://stellarium.org/")
|
2017-03-02 16:57:25 +00:00
|
|
|
|
(synopsis "3D sky viewer")
|
gnu: stellarium: Update to 1.2.
* gnu/packages/astronomy.scm (stellarium): Update to 1.2.
[arguments]{tests}: Disable tests, with further review of INDI package.
[arguments]{configure-flags}: Explicitly disable Qt6 (prevent failing
build) and ShowMySky (not packed yet).
[phases]{set-offscreen-display}: Remove trail #T in lambda.
[inputs]: Remove labels and add GPSD, INDI, LIBNOVA, OPENSSL,
QTCHARTS, QTPOSITIONING, QTTRANSLATIONS, QTWEBENGINE-5, QXLSX.
[native-inputs]: Remove labels and add DOXYGEN, GRAPHVIZ, MESA,
PYTHON-WRAPPER.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-02-08 02:30:08 +00:00
|
|
|
|
(description
|
|
|
|
|
"Stellarium is a planetarium. It shows a realistic sky in
|
2017-03-02 16:57:25 +00:00
|
|
|
|
3D, just like what you see with the naked eye, binoculars, or a telescope. It
|
|
|
|
|
can be used to control telescopes over a serial port for tracking celestial
|
|
|
|
|
objects.")
|
2017-03-02 05:58:34 +00:00
|
|
|
|
(license license:gpl2+)))
|
2019-05-19 07:09:48 +00:00
|
|
|
|
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(define-public python-astropy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-astropy")
|
2024-06-18 09:15:35 +00:00
|
|
|
|
(version "6.1.1")
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "astropy" version))
|
|
|
|
|
(sha256
|
2024-06-18 09:15:35 +00:00
|
|
|
|
(base32 "0f31wgjg22phcx8fw7p612qp3v2ak7nziisnsnwaqc0wj5fz9ip5"))
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(modules '((guix build utils)))
|
|
|
|
|
(snippet
|
|
|
|
|
'(begin
|
|
|
|
|
;; Remove Python bundles.
|
|
|
|
|
(with-directory-excursion "astropy/extern"
|
|
|
|
|
(for-each delete-file-recursively '("ply" "configobj")))
|
2022-12-11 22:25:44 +00:00
|
|
|
|
;; Remove cextern bundles. Check bundled versions against available
|
|
|
|
|
;; in Guix in the future update of astropy.
|
2023-07-26 23:15:34 +00:00
|
|
|
|
;; Linking against an external cfitsio version has been removed,
|
|
|
|
|
;; see https://github.com/astropy/astropy/pull/14311
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(with-directory-excursion "cextern"
|
2023-07-26 23:15:34 +00:00
|
|
|
|
(for-each delete-file-recursively '("expat" "wcslib")))))))
|
2024-04-03 21:09:02 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(arguments
|
2024-01-27 13:08:21 +00:00
|
|
|
|
(list
|
2024-04-03 21:09:02 +00:00
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "--pyargs" "astropy"
|
|
|
|
|
"-n" "auto"
|
|
|
|
|
"-k" (string-append
|
|
|
|
|
;; Skip tests that need remote data.
|
|
|
|
|
"not remote_data"
|
2024-04-04 07:22:13 +00:00
|
|
|
|
;; ValueError: The truth value of an array with more than
|
|
|
|
|
;; one element is ambiguous. Use a.any() or a.all()
|
2024-07-30 11:08:40 +00:00
|
|
|
|
" and not test_table_comp[t16-t26]"
|
|
|
|
|
;; E Unreliable test timings! <...>
|
|
|
|
|
" and not test_datetime_timedelta_roundtrip"))
|
2024-01-27 13:08:21 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'preparations
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Use our own libraries in place of bundles.
|
|
|
|
|
(setenv "ASTROPY_USE_SYSTEM_ALL" "1")
|
|
|
|
|
;; Relax xfail tests.
|
|
|
|
|
(substitute* "pyproject.toml"
|
|
|
|
|
(("xfail_strict = true") "xfail_strict = false"))
|
|
|
|
|
;; Replace reference to external ply.
|
|
|
|
|
(substitute* "astropy/utils/parsing.py"
|
|
|
|
|
(("astropy.extern.ply") "ply"))
|
|
|
|
|
;; Replace reference to external configobj.
|
|
|
|
|
(substitute* "astropy/config/configuration.py"
|
|
|
|
|
(("from astropy.extern.configobj ") ""))))
|
|
|
|
|
;; This file is opened in both install and check phases.
|
|
|
|
|
(add-before 'install 'writable-compiler
|
|
|
|
|
(lambda _
|
|
|
|
|
(make-file-writable "astropy/_compiler.c")))
|
|
|
|
|
(replace 'check
|
2024-04-03 21:09:02 +00:00
|
|
|
|
(lambda* (#:key tests? test-flags #:allow-other-keys)
|
2024-01-27 13:08:21 +00:00
|
|
|
|
(when tests?
|
2024-04-03 21:09:02 +00:00
|
|
|
|
(setenv "HOME" "/tmp")
|
|
|
|
|
(make-file-writable "astropy/_compiler.c")
|
|
|
|
|
;; Extensions have to be rebuilt before running the tests.
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"
|
|
|
|
|
"-j" (number->string (parallel-job-count)))
|
|
|
|
|
;; Step out of the source directory to avoid interference; we
|
|
|
|
|
;; want to run the installed code with extensions etc.
|
|
|
|
|
(with-directory-excursion "/tmp"
|
|
|
|
|
(apply invoke "pytest" "-v" test-flags))))))))
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(native-inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list pkg-config
|
2023-04-27 23:43:13 +00:00
|
|
|
|
python-colorlog
|
2021-12-13 16:18:24 +00:00
|
|
|
|
python-coverage
|
2024-01-27 12:47:02 +00:00
|
|
|
|
python-cython-3
|
2021-12-13 16:18:24 +00:00
|
|
|
|
python-extension-helpers
|
2023-04-27 23:43:13 +00:00
|
|
|
|
python-h5py
|
2021-12-13 16:18:24 +00:00
|
|
|
|
python-ipython
|
|
|
|
|
python-jplephem
|
|
|
|
|
python-objgraph
|
2023-04-27 23:43:13 +00:00
|
|
|
|
python-pandas
|
|
|
|
|
python-pyarrow
|
2023-04-15 01:50:13 +00:00
|
|
|
|
python-pytest
|
2021-12-13 16:18:24 +00:00
|
|
|
|
python-pytest-astropy
|
2023-04-27 23:43:13 +00:00
|
|
|
|
python-pytest-astropy-header
|
2024-01-27 12:47:02 +00:00
|
|
|
|
python-pytest-mpl
|
2021-12-13 16:18:24 +00:00
|
|
|
|
python-pytest-xdist
|
2023-04-27 23:43:13 +00:00
|
|
|
|
python-scikit-image
|
2021-12-13 16:18:24 +00:00
|
|
|
|
python-setuptools-scm
|
|
|
|
|
python-sgp4
|
2023-04-27 23:43:13 +00:00
|
|
|
|
python-skyfield
|
2024-04-04 07:22:13 +00:00
|
|
|
|
python-threadpoolctl
|
2023-04-27 23:43:13 +00:00
|
|
|
|
python-timezonefinder))
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(inputs
|
2023-07-26 23:15:34 +00:00
|
|
|
|
(list expat wcslib))
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(propagated-inputs
|
2024-01-27 12:47:02 +00:00
|
|
|
|
(list python-astropy-iers-data
|
|
|
|
|
python-configobj
|
2024-04-04 07:22:13 +00:00
|
|
|
|
python-matplotlib
|
2021-12-24 05:50:18 +00:00
|
|
|
|
python-numpy
|
|
|
|
|
python-packaging
|
|
|
|
|
python-ply
|
|
|
|
|
python-pyerfa
|
2024-04-04 07:22:13 +00:00
|
|
|
|
python-pyyaml
|
|
|
|
|
python-scipy))
|
2021-10-30 02:51:33 +00:00
|
|
|
|
(home-page "https://www.astropy.org/")
|
|
|
|
|
(synopsis "Core package for Astronomy in Python")
|
|
|
|
|
(description
|
|
|
|
|
"Astropy is a single core package for Astronomy in Python. It contains
|
|
|
|
|
much of the core functionality and some common tools needed for performing
|
|
|
|
|
astronomy and astrophysics.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-01-09 04:38:39 +00:00
|
|
|
|
(define-public python-astropy-healpix
|
|
|
|
|
(package
|
|
|
|
|
(name "python-astropy-healpix")
|
2024-04-11 10:23:55 +00:00
|
|
|
|
(version "1.0.3")
|
2022-01-09 04:38:39 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
2022-10-19 20:29:14 +00:00
|
|
|
|
(uri (pypi-uri "astropy_healpix" version))
|
2022-01-09 04:38:39 +00:00
|
|
|
|
(sha256
|
2024-04-11 10:23:55 +00:00
|
|
|
|
(base32 "0ilpwwvdnd4nchivwnbiy1hl07hd2mdg4wb90r2p05kvr5z2lpfy"))))
|
2023-05-24 21:51:45 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-01-09 04:38:39 +00:00
|
|
|
|
(arguments
|
2023-05-24 21:51:45 +00:00
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
;; This file is opened in both install and check phases.
|
|
|
|
|
(add-before 'install 'writable-compiler
|
|
|
|
|
(lambda _ (make-file-writable "astropy_healpix/_compiler.c")))
|
|
|
|
|
(add-before 'check 'prepare-test-environment
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Extensions have to be rebuilt before running the tests.
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace")
|
|
|
|
|
(make-file-writable "astropy_healpix/_compiler.c"))))))
|
2022-01-09 04:38:39 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-extension-helpers
|
|
|
|
|
python-hypothesis
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy python-numpy))
|
|
|
|
|
(home-page "https://github.com/astropy/astropy-healpix")
|
|
|
|
|
(synopsis "HEALPix for Astropy")
|
|
|
|
|
(description "This package provides HEALPix to the Astropy project.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-01-26 02:01:20 +00:00
|
|
|
|
(define-public python-astropy-iers-data
|
|
|
|
|
(package
|
|
|
|
|
(name "python-astropy-iers-data")
|
|
|
|
|
;; In case of changing the source method git-fetch, consider to check the
|
|
|
|
|
;; tag as it's not following the PyPI version, see
|
|
|
|
|
;; <https://github.com/astropy/astropy-iers-data/issues/17>.
|
2024-07-01 21:35:27 +00:00
|
|
|
|
(version "0.2024.7.15.0.31.42")
|
2024-01-26 02:01:20 +00:00
|
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(source
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(origin
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(method url-fetch)
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2024-04-04 07:25:21 +00:00
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(uri (pypi-uri "astropy_iers_data" version))
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2024-01-26 02:01:20 +00:00
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(sha256
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2024-07-01 21:35:27 +00:00
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(base32 "18wpqjyjqpxhp1x9rh1dxqmmif2amsbwwbw0zwfjh0dyrbb28c3h"))))
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2024-01-26 02:01:20 +00:00
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(build-system pyproject-build-system)
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(arguments
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(list
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;; Dependencies cycle wit python-astropy, see
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;; <https://github.com/astropy/astropy-iers-data/issues/21>.
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#:tests? #f
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'build 'set-env-version
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(lambda _
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(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
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(native-inputs
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(list python-hypothesis
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python-pytest
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python-pytest-remotedata
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python-setuptools-scm))
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(home-page "https://docs.astropy.org/en/latest/utils/iers.html")
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(synopsis "IERS Earth Rotation and Leap Second tables for the astropy core package")
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(description
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"The @code{iers} package provides access to the tables provided by the
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@acronym{International Earth Rotation and Reference Systems, IERS} service, in
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particular the
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@url{https://www.iers.org/IERS/EN/DataProducts/EarthOrientationData/eop.html,
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Earth Orientation data} allowing interpolation of published UT1-UTC and polar
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motion values for given times. The UT1-UTC values are used in
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@url{https://docs.astropy.org/en/latest/time/index.html#astropy-time, Time and
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Dates (astropy.time)} to provide UT1 values, and the polar motions are used in
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@code{astropy.coordinates} to determine Earth orientation for
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celestial-to-terrestrial coordinate transformations.")
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(license license:bsd-3)))
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2024-03-10 13:51:29 +00:00
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(define-public python-astroplan
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(package
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(name "python-astroplan")
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2024-04-11 17:56:04 +00:00
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(version "0.10")
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2024-03-10 13:51:29 +00:00
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "astroplan" version))
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(sha256
|
2024-04-11 17:56:04 +00:00
|
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(base32 "0nl7yi0h5nn4id1jifd8hpwzqdarq9z2iq56x0j2kmj3472cjw0n"))))
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2024-03-10 13:51:29 +00:00
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "astroplan/tests"
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"-k" (string-append
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;; Test requiring newer python-pytz
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"not test_timezone"
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;; Disable tests requiring remote data.
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" and not test_FixedTarget_from_name"
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" and not test_altitude_constraint"
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" and not test_at_night_basic"
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" and not test_caches_shapes"
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" and not test_compare_airmass_constraint_and_observer"
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" and not test_compare_altitude_constraint_and_observer"
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" and not test_docs_example"
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" and not test_eclipses"
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" and not test_eq_observer"
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" and not test_event_observable"
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" and not test_galactic_plane_separation"
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" and not test_get_skycoord"
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" and not test_hash_observer"
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" and not test_is_night"
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" and not test_local_time_constraint_hawaii_tz"
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" and not test_local_time_constraint_utc"
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" and not test_moon_illumination"
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" and not test_moon_separation"
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" and not test_observability_table"
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" and not test_observer_lon_lat_el"
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" and not test_regression_airmass_141"
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" and not test_regression_shapes"
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|
" and not test_sun_separation"
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" and not test_tonight")
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"--ignore=astroplan/tests/test_scheduling.py")
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|
#:phases
|
|
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|
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#~(modify-phases %standard-phases
|
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(add-before 'check 'prepare-test-environment
|
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(lambda _
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(setenv "HOME" "/tmp")
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(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
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|
|
(propagated-inputs
|
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|
|
|
(list python-astropy
|
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python-astroquery
|
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python-matplotlib
|
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python-numpy
|
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python-pytz
|
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python-six))
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(native-inputs
|
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|
|
(list python-pytest-astropy
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python-pytest-mpl
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python-setuptools-scm))
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(home-page "https://github.com/astropy/astroplan")
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(synopsis "Observation planning package for astronomers")
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(description
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|
"This package provides a flexible toolbox for observation planning and
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scheduling. When complete, the goal is to be easy for Python beginners and new
|
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observers to to pick up, but powerful enough for observatories preparing nightly
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and long-term schedules.
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Features:
|
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@itemize
|
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|
@item calculate rise/set/meridian transit times, alt/az positions for targets at
|
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|
observatories anywhere on Earth
|
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|
|
@item built-in plotting convenience functions for standard observation planning
|
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|
plots (airmass, parallactic angle, sky maps)
|
|
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|
|
@item determining observability of sets of targets given an arbitrary set of
|
|
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|
|
constraints (i.e., altitude, airmass, moon separation/illumination, etc.)
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:bsd-3)))
|
|
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|
|
|
2022-01-09 04:37:23 +00:00
|
|
|
|
(define-public python-astroquery
|
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|
|
(package
|
|
|
|
|
(name "python-astroquery")
|
2024-03-10 14:27:57 +00:00
|
|
|
|
(version "0.4.7")
|
2022-01-09 04:37:23 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "astroquery" version))
|
|
|
|
|
(sha256
|
2024-03-10 14:27:57 +00:00
|
|
|
|
(base32 "1jbyfhqk74wsdjxzqi0hcrgc7ha4q8cyjx96nv6w9bjg1b5vlzq4"))))
|
2023-11-17 12:16:09 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-01-09 04:37:23 +00:00
|
|
|
|
(arguments
|
2023-11-17 12:16:09 +00:00
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "--pyargs" "astroquery"
|
2024-03-10 14:27:57 +00:00
|
|
|
|
"-m" "not remote_data"
|
|
|
|
|
;; Some tests failed with parallel run, see
|
|
|
|
|
;; <https://github.com/astropy/astroquery/issues/2968>.
|
|
|
|
|
;; "-n" "auto"
|
|
|
|
|
"-k" (string-append
|
|
|
|
|
;; Failed: DID NOT RAISE <class
|
|
|
|
|
;; 'astropy.utils.exceptions.AstropyDeprecationWarning'>
|
|
|
|
|
"not test_raises_deprecation_warning"))
|
2023-11-17 12:16:09 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-03-10 14:27:57 +00:00
|
|
|
|
(replace 'check
|
|
|
|
|
(lambda* (#:key tests? test-flags #:allow-other-keys)
|
|
|
|
|
(when tests?
|
|
|
|
|
;; Some tests require write access to $HOME.
|
|
|
|
|
(setenv "HOME" "/tmp")
|
|
|
|
|
;; Step out of the source directory to avoid interference;
|
|
|
|
|
;; we want to run the installed code with extensions etc.
|
|
|
|
|
(with-directory-excursion "/tmp"
|
|
|
|
|
(apply invoke "pytest" "-v" test-flags))))))))
|
2022-01-09 04:37:23 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-beautifulsoup4
|
|
|
|
|
python-html5lib
|
|
|
|
|
python-keyring
|
|
|
|
|
python-numpy
|
|
|
|
|
python-pyvo
|
|
|
|
|
python-requests))
|
|
|
|
|
(native-inputs
|
2023-11-17 12:16:09 +00:00
|
|
|
|
(list python-astropy-healpix
|
2022-01-09 04:37:23 +00:00
|
|
|
|
python-matplotlib
|
2023-11-17 12:16:09 +00:00
|
|
|
|
;; python-mocpy : Not packed yet, optional
|
2022-01-09 04:37:23 +00:00
|
|
|
|
python-pytest-astropy
|
2023-11-17 12:16:09 +00:00
|
|
|
|
python-pytest-dependency
|
|
|
|
|
python-regions))
|
|
|
|
|
(home-page "https://astroquery.readthedocs.io/en/latest/index.html")
|
2022-01-09 04:37:23 +00:00
|
|
|
|
(synopsis "Access online astronomical data resources")
|
|
|
|
|
(description "Astroquery is a package that contains a collection of tools
|
|
|
|
|
to access online Astronomical data. Each web service has its own sub-package.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-04-21 20:04:43 +00:00
|
|
|
|
(define-public python-astroscrappy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-astroscrappy")
|
2024-05-20 22:12:36 +00:00
|
|
|
|
(version "1.2.0")
|
2023-04-21 20:04:43 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "astroscrappy" version))
|
|
|
|
|
(sha256
|
2024-05-20 22:12:36 +00:00
|
|
|
|
(base32 "0r2alg8imr201ykjsvr6y43bzw8mwbc4ddprn8f6qfw9k4hsx8ff"))))
|
2023-04-21 20:04:43 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags #~(list "--pyargs" "astroscrappy")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'preparations
|
|
|
|
|
(lambda _ (setenv "HOME" "/tmp")))
|
|
|
|
|
(add-before 'install 'writable-compiler
|
|
|
|
|
(lambda _ (make-file-writable "astroscrappy/_compiler.c")))
|
|
|
|
|
(add-before 'check 'tests-preparation
|
|
|
|
|
(lambda _
|
|
|
|
|
(make-file-writable "astroscrappy/_compiler.c")
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(native-inputs
|
2024-05-20 22:12:36 +00:00
|
|
|
|
(list python-cython-3
|
2023-04-21 20:04:43 +00:00
|
|
|
|
python-extension-helpers
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-scipy
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs (list python-astropy python-numpy))
|
|
|
|
|
(home-page "https://github.com/astropy/astroscrappy")
|
|
|
|
|
(synopsis "Speedy Cosmic Ray Annihilation Package in Python")
|
|
|
|
|
(description
|
|
|
|
|
"Astro-SCRAPPY is designed to detect cosmic rays in images (numpy
|
|
|
|
|
arrays), based on Pieter van Dokkum's L.A.Cosmic algorithm. Much of this was
|
|
|
|
|
originally adapted from cosmics.py written by Malte Tewes. This is designed to
|
|
|
|
|
be as fast as possible so some of the readability has been sacrificed,
|
|
|
|
|
specifically in the C code.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:44 +00:00
|
|
|
|
(define-public python-bayesicfitting
|
|
|
|
|
(package
|
|
|
|
|
(name "python-bayesicfitting")
|
2024-04-03 17:52:38 +00:00
|
|
|
|
(version "3.2.1")
|
2024-04-03 17:35:22 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/dokester/BayesicFitting")
|
2024-04-03 17:52:38 +00:00
|
|
|
|
;; Tag style has been changed, see
|
|
|
|
|
;; <https://github.com/dokester/BayesicFitting/issues/23>.
|
|
|
|
|
(commit (string-append "v." version))))
|
2024-04-03 17:35:22 +00:00
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2024-04-03 17:52:38 +00:00
|
|
|
|
(base32 "0brqvy4r75vh93lj4jwv8wcrc96ka1v44f5ckjvr65y30plnfwg2"))))
|
2024-04-03 17:35:22 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2023-05-30 19:58:44 +00:00
|
|
|
|
(arguments
|
2024-04-03 17:35:22 +00:00
|
|
|
|
(list
|
|
|
|
|
#:test-flags #~(list "-m" "unittest" "discover" "test")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(replace 'check
|
|
|
|
|
(lambda* (#:key tests? test-flags #:allow-other-keys)
|
|
|
|
|
(when tests?
|
|
|
|
|
(apply invoke "python" test-flags)))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-future
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy))
|
2023-05-30 19:58:44 +00:00
|
|
|
|
(home-page "https://www.bayesicfitting.nl")
|
|
|
|
|
(synopsis "Python Toolbox for Astronimical Bayesian fitting")
|
|
|
|
|
(description
|
|
|
|
|
"The BayesicFitting package is a python version of the the fitter classes
|
|
|
|
|
in @acronym{HCSS, Herschel Common Science System}. HCSS was the all
|
|
|
|
|
encompassing software system for the operations and analysis of the ESA satelite
|
|
|
|
|
Herschel.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2023-10-02 15:03:42 +00:00
|
|
|
|
(define-public python-casa-formats-io
|
|
|
|
|
(package
|
|
|
|
|
(name "python-casa-formats-io")
|
2024-04-17 21:44:02 +00:00
|
|
|
|
(version "0.3.0")
|
2023-10-02 15:03:42 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "casa-formats-io" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2023-11-17 12:15:55 +00:00
|
|
|
|
"16qwr6yq86qgdb0lvnmfm5mn6g2d29b1vrmfv26v77kxm6szxr8h"))))
|
2023-10-02 15:03:42 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest python-pytest-cov python-pytest-openfiles))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy python-click python-dask python-numpy))
|
|
|
|
|
(home-page "https://casa-formats-io.readthedocs.io/")
|
|
|
|
|
(synopsis "Dask-based reader for CASA data")
|
|
|
|
|
(description
|
|
|
|
|
"The @code{casa-formats-io} package is a small package which implements
|
|
|
|
|
functionality to read data stored in @acronym{CASA, Common Astronomy Software
|
|
|
|
|
Applications} formats (such as @file{.image} datasets). This implementation
|
|
|
|
|
is independent of and does not use @code{casacore}.")
|
|
|
|
|
(license license:lgpl2.0)))
|
|
|
|
|
|
2023-04-21 20:04:45 +00:00
|
|
|
|
(define-public python-ccdproc
|
|
|
|
|
(package
|
|
|
|
|
(name "python-ccdproc")
|
2024-05-20 22:12:38 +00:00
|
|
|
|
(version "2.4.2")
|
2023-04-21 20:04:45 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "ccdproc" version))
|
|
|
|
|
(sha256
|
2024-05-20 22:12:38 +00:00
|
|
|
|
(base32 "14faivm9nihpdwzg0jx1c9zr7jk22gjfjw78raq6h63ypl10i6yx"))))
|
2023-04-21 20:04:45 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2023-07-26 23:15:35 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-memory-profiler
|
gnu: python-asdf: Adjust inputs.
python-asdf requires python-semantic-version during runtime which may be
reproduced by:
guix shell python-asdf python -- python3 -c 'import asdf'
<...>
ModuleNotFoundError: No module named 'semantic_version'
* gnu/packages/astronomy.scm (python-asdf): Adjust inputs.
[native-inputs]: Remove python-semantic-version.
[propagated-inputs]: Add python-semantic-version.
(python-asdf-astropy, python-asdf-compression, python-asdf-coordinates-schemas,
python-asdf-wcs-schemas, python-asdf-zarr, python-astroalignn, python-ccdproc,
python-crds, python-ginga, python-gwcs, python-photutils, python-rad,
python-reproject, python-roman-datamodels, python-spectral-cube,
python-specutils, python-stcal, python-stdatamodels, python-stpipe,
python-stsynphot, python-sunpy, python-synphot, python-tweakwcs): Remove
python-semantic-version from native or propagated inputs.
Change-Id: I96bf57f77c327f4ff208e0b173e84bcdd4c287da
Reported-by: Iliya Tikhonenko <tikhonenko@mpe.mpg.de>
2024-04-20 20:53:00 +00:00
|
|
|
|
python-pytest-astropy))
|
2023-04-21 20:04:45 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-astroscrappy
|
|
|
|
|
python-numpy
|
|
|
|
|
python-reproject
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-scipy))
|
|
|
|
|
(home-page "http://ccdproc.readthedocs.io/")
|
|
|
|
|
(synopsis "Basic data reductions of CCD images")
|
|
|
|
|
(description "The ccdproc package provides many of the necessary tools for
|
|
|
|
|
processing of CCD images built on a framework to provide error propagation and
|
|
|
|
|
bad pixel tracking throughout the reduction process.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-07-02 20:03:54 +00:00
|
|
|
|
(define-public python-cdflib
|
|
|
|
|
(package
|
|
|
|
|
(name "python-cdflib")
|
2024-05-20 22:12:39 +00:00
|
|
|
|
(version "1.3.1")
|
2022-07-02 20:03:54 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
2024-03-09 17:55:51 +00:00
|
|
|
|
(method git-fetch) ; no tests in PyPI release
|
2022-07-02 20:03:54 +00:00
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/MAVENSDC/cdflib")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2024-05-20 22:12:39 +00:00
|
|
|
|
(base32 "0zmz9wjhlq43lqy5k4fld9cj5k39s1hkkaligrn3kpf9hcbd79qn"))))
|
2022-11-22 23:23:12 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-07-02 20:03:54 +00:00
|
|
|
|
(arguments
|
2024-03-09 17:55:51 +00:00
|
|
|
|
(list #:phases
|
2022-07-02 20:03:54 +00:00
|
|
|
|
#~(modify-phases %standard-phases
|
2023-09-07 22:32:14 +00:00
|
|
|
|
(add-before 'build 'set-env-version
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
|
|
|
|
|
#$version)))
|
2022-11-22 23:23:12 +00:00
|
|
|
|
(add-before 'check 'set-home-env
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" (getcwd)))))))
|
2022-07-02 20:03:54 +00:00
|
|
|
|
(propagated-inputs
|
2024-05-20 22:12:39 +00:00
|
|
|
|
(list python-numpy))
|
2022-07-02 20:03:54 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-hypothesis
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-cov
|
|
|
|
|
python-pytest-remotedata
|
2023-09-07 22:32:14 +00:00
|
|
|
|
python-setuptools-scm
|
2022-07-02 20:03:54 +00:00
|
|
|
|
python-xarray))
|
|
|
|
|
(home-page "https://github.com/MAVENSDC/cdflib")
|
|
|
|
|
(synopsis "Python library to deal with NASA's CDF astronmical data format")
|
2022-11-22 23:23:12 +00:00
|
|
|
|
(description "This package provides a Python @acronym{CDF, Computable
|
|
|
|
|
Document Format} reader toolkit.
|
2022-07-02 20:03:54 +00:00
|
|
|
|
It provides the following functionality:
|
|
|
|
|
@itemize
|
|
|
|
|
@item Ability to read variables and attributes from CDF files
|
|
|
|
|
@item Writes CDF version 3 files
|
|
|
|
|
@item Can convert between CDF time types (EPOCH/EPOCH16/TT2000) to other common
|
|
|
|
|
time formats
|
|
|
|
|
@item Can convert CDF files into XArray Dataset objects and vice versa,
|
|
|
|
|
attempting to maintain ISTP compliance
|
2022-11-22 23:23:12 +00:00
|
|
|
|
@end itemize")
|
2022-07-02 20:03:54 +00:00
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2024-03-12 22:32:20 +00:00
|
|
|
|
(define-public python-cmyt
|
|
|
|
|
(package
|
|
|
|
|
(name "python-cmyt")
|
|
|
|
|
(version "2.0.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "cmyt" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1zabmckr1z637pfqqvlkj0asfqqvx2x92163dby8x0c8yiqgdvjb"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-colorspacious python-pytest python-pytest-mpl))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-matplotlib python-numpy))
|
|
|
|
|
(home-page "https://yt-project.org/")
|
|
|
|
|
(synopsis "Matplotlib colormaps from the yt project")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a range of colormaps designed for scientific
|
|
|
|
|
use with Matplotlib. It includes perceptually uniform sequential colormaps such
|
|
|
|
|
as @code{abre}, @code{dusk}, @code{kepl}, and @code{octarine}, as well as
|
|
|
|
|
monochromatic sequential colormaps like @code{blue}, @code{green}, and
|
|
|
|
|
@code{red}, and others (@code{algae}, @code{pastel}, and @code{xray}).")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:41 +00:00
|
|
|
|
(define-public python-crds
|
|
|
|
|
(package
|
|
|
|
|
(name "python-crds")
|
2024-07-09 20:20:04 +00:00
|
|
|
|
(version "11.17.26")
|
2024-05-20 22:12:40 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "crds" version))
|
|
|
|
|
(sha256
|
2024-07-09 20:20:04 +00:00
|
|
|
|
(base32 "1qw1j3gz8l2z4ra33hl4zblc90kvwjf2ajb343n0xmf7lzs1gwc7"))))
|
2023-05-30 19:58:41 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; XXX: Tests require Internet access to https://hst-crds.stsci.edu and
|
|
|
|
|
;; additional test data. See:
|
|
|
|
|
;; https://github.com/spacetelescope/crds/blob/master/setup_test_cache
|
|
|
|
|
#:tests? #f))
|
2024-05-20 22:12:40 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf
|
|
|
|
|
python-astropy
|
|
|
|
|
python-boto3
|
|
|
|
|
python-filelock
|
|
|
|
|
python-numpy
|
|
|
|
|
python-parsley
|
|
|
|
|
python-pysynphot
|
|
|
|
|
python-roman-datamodels
|
|
|
|
|
python-stsynphot
|
|
|
|
|
python-requests))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-setuptools-scm))
|
2023-05-30 19:58:41 +00:00
|
|
|
|
(home-page "https://hst-crds.stsci.edu")
|
|
|
|
|
(synopsis "Calibration Reference Data System for HST and JWST")
|
|
|
|
|
(description
|
|
|
|
|
"CRDS is a package used for working with astronomical reference files for
|
|
|
|
|
the HST and JWST telescopes. CRDS is useful for performing various operations
|
2024-01-14 20:42:50 +00:00
|
|
|
|
on reference files or reference file assignment rules. CRDS is used to
|
|
|
|
|
assign, check, and compare reference files and rules, and also to predict
|
|
|
|
|
those datasets which should potentially be reprocessed due to changes in
|
|
|
|
|
reference files or assignment rules. CRDS has versioned rules which define
|
|
|
|
|
the assignment of references for each type and instrument configuration. CRDS
|
|
|
|
|
has web sites corresponding to each project @url{http://hst-crds.stsci.edu} or
|
|
|
|
|
@url{https://jwst-crds.stsci.edu/} which record information about reference
|
|
|
|
|
files and provide related services.")
|
2023-05-30 19:58:41 +00:00
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-03-08 23:26:35 +00:00
|
|
|
|
(define-public python-czml3
|
|
|
|
|
(package
|
|
|
|
|
(name "python-czml3")
|
2024-07-01 21:40:04 +00:00
|
|
|
|
(version "1.0.1")
|
2024-07-01 21:40:53 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/poliastro/czml3")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1vm9ajpnwxncvsl1ix3jarqyi14b0703g12wsr8b0agkrjlpmvmx"))))
|
2023-03-08 23:26:35 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-attrs
|
|
|
|
|
python-dateutil
|
|
|
|
|
python-w3lib))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-cov
|
|
|
|
|
python-pytest-mypy))
|
|
|
|
|
(home-page "https://github.com/poliastro/czml3")
|
|
|
|
|
(synopsis "Python library to write CZML")
|
|
|
|
|
(description
|
|
|
|
|
"CZML3 is a Python library to write CZML, a JSON format for describing
|
|
|
|
|
a time-dynamic graphical scene, primarily for display in a web browser running
|
|
|
|
|
Cesium.")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2022-11-24 11:24:37 +00:00
|
|
|
|
(define-public python-drms
|
|
|
|
|
(package
|
|
|
|
|
(name "python-drms")
|
2024-01-14 20:46:19 +00:00
|
|
|
|
(version "0.7.1")
|
2022-11-24 11:24:37 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "drms" version))
|
|
|
|
|
(sha256
|
2024-01-14 20:46:19 +00:00
|
|
|
|
(base32 "01q00zwpbhik9lgbc42z6q791ybxc41rxgrj04fpcfkl3hcl0nyr"))))
|
2023-11-17 12:16:07 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-11-24 11:24:37 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs (list python-numpy python-pandas))
|
|
|
|
|
(home-page "https://sunpy.org")
|
|
|
|
|
(synopsis "Access astronomical HMI, AIA and MDI data with Python")
|
|
|
|
|
(description
|
|
|
|
|
"DRMS module provides an easy-to-use interface for accessing HMI, AIA and
|
|
|
|
|
MDI data with Python. It uses the publicly accessible
|
|
|
|
|
JSOC (@url{http://jsoc.stanford.edu/}) DRMS server by default, but can also be
|
|
|
|
|
used with local NetDRMS sites.")
|
|
|
|
|
(license license:bsd-2)))
|
|
|
|
|
|
2023-05-30 19:58:46 +00:00
|
|
|
|
(define-public python-drizzle
|
|
|
|
|
(package
|
|
|
|
|
(name "python-drizzle")
|
2024-06-18 09:17:25 +00:00
|
|
|
|
(version "1.15.2")
|
2023-10-08 23:40:11 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch) ;PyPi doesn't have the test data sets
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/spacetelescope/drizzle")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2024-06-18 09:17:25 +00:00
|
|
|
|
(base32 "1fp6gcvp6nz4a2mmy9vjn5wwywldhkg8bjjgb4ldn0vpv9k4nv8q"))))
|
2023-05-30 19:58:46 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
2023-10-08 23:40:11 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'build 'set-env-version
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Cython extensions have to be built before running the tests.
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy python-numpy))
|
|
|
|
|
(native-inputs
|
2024-02-18 15:17:26 +00:00
|
|
|
|
(list python-pytest python-setuptools-scm))
|
2023-05-30 19:58:46 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/drizzle")
|
|
|
|
|
(synopsis
|
|
|
|
|
"Astronomical tool for combining dithered images into a single image")
|
|
|
|
|
(description
|
2023-10-08 23:40:11 +00:00
|
|
|
|
"The drizzle library is a Python package for combining dithered images
|
|
|
|
|
into a single image. This library is derived from code used in DrizzlePac.
|
|
|
|
|
Like DrizzlePac, most of the code is implemented in the C language. The
|
|
|
|
|
biggest change from DrizzlePac is that this code passes an array that maps the
|
|
|
|
|
input to output image into the C code, while the DrizzlePac code computes the
|
|
|
|
|
mapping by using a Python callback. Switching to using an array allowed the
|
|
|
|
|
code to be greatly simplified.")
|
2023-05-30 19:58:46 +00:00
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-01-14 23:00:47 +00:00
|
|
|
|
(define-public python-dust-extinction
|
|
|
|
|
(package
|
|
|
|
|
(name "python-dust-extinction")
|
2024-06-11 21:23:26 +00:00
|
|
|
|
(version "1.4.1")
|
2024-01-14 23:00:47 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "dust_extinction" version))
|
|
|
|
|
(sha256
|
2024-06-11 21:23:26 +00:00
|
|
|
|
(base32 "00vyglyq2209y0mp0d5vipqrfjxp4qb8x8nx8ic2x4s19xq8ds88"))))
|
2024-01-14 23:00:47 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy python-scipy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest-astropy))
|
|
|
|
|
(home-page "http://dust-extinction.readthedocs.io/")
|
|
|
|
|
(synopsis "Interstellar Dust Extinction Models")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides astronomical interstellar dust extinction curves
|
|
|
|
|
implemented using the astropy.modeling framework.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-08-13 23:25:31 +00:00
|
|
|
|
(define-public python-ephem
|
|
|
|
|
(package
|
|
|
|
|
(name "python-ephem")
|
2023-10-27 22:14:57 +00:00
|
|
|
|
(version "4.1.5")
|
2024-05-20 22:12:29 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "ephem" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0ainqbnvw320pc61q5b6ad6f2mhn1pvrlnq489cwfx0m82mahr0c"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
2022-08-13 23:25:31 +00:00
|
|
|
|
(native-inputs (list tzdata))
|
|
|
|
|
(home-page "https://rhodesmill.org/pyephem/")
|
|
|
|
|
(synopsis "Compute positions of the planets and stars")
|
|
|
|
|
(description
|
|
|
|
|
"PyEphem provides an @code{ephem} Python package for performing
|
|
|
|
|
high-precision astronomy computations.
|
|
|
|
|
|
|
|
|
|
The name ephem is short for the word ephemeris, which is the traditional term
|
|
|
|
|
for a table giving the position of a planet, asteroid, or comet for a series
|
|
|
|
|
of dates.")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2022-11-24 11:24:39 +00:00
|
|
|
|
(define-public python-hvpy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-hvpy")
|
2024-03-18 14:46:33 +00:00
|
|
|
|
(version "1.1.0")
|
2022-11-24 11:24:39 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "hvpy" version))
|
|
|
|
|
(sha256
|
2024-03-18 14:46:33 +00:00
|
|
|
|
(base32 "0bly1bgp0axxhzzf5imqsgmms41z8cxbjahxsibvb55dk94gwig6"))))
|
2022-11-24 11:24:39 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org
|
2024-03-18 14:46:33 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-pydantic-2 python-pydantic-settings python-requests))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest python-pytest-astropy))
|
2022-11-24 11:24:39 +00:00
|
|
|
|
(home-page "https://helioviewer.org/")
|
|
|
|
|
(synopsis "Helioviewer Python API Wrapper")
|
|
|
|
|
(description "@code{hvpy} is a Python API wrapper around the formal
|
|
|
|
|
@url{Helioviewer API, https://api.helioviewer.org/docs/v2/}.")
|
|
|
|
|
(license license:bsd-2)))
|
|
|
|
|
|
2024-07-02 20:23:28 +00:00
|
|
|
|
(define-public python-kanon
|
|
|
|
|
(package
|
|
|
|
|
(name "python-kanon")
|
|
|
|
|
(version "0.6.6")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch) ; no release in PyPI
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/ALFA-project-erc/kanon")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0sg9yrsas5xmhbw6mhfyxsxh9i060af6v02whr9fqgv687fiyrhc"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list ;"--numprocesses" "auto"
|
|
|
|
|
;; XXX: This tests failing a lot.
|
|
|
|
|
"-k" (string-append "not test_attribute_forwardin"
|
|
|
|
|
" and not test_declination"
|
|
|
|
|
" and not test_init_basedquantity"
|
|
|
|
|
" and not test_ptolemy_viz"
|
|
|
|
|
" and not test_ptolemy_viz"
|
|
|
|
|
" and not test_quantity"
|
|
|
|
|
" and not test_read"
|
|
|
|
|
" and not test_shifting"
|
|
|
|
|
" and not test_sun_true_position"
|
|
|
|
|
" and not test_sun_true_position")
|
|
|
|
|
"--ignore=kanon/tables/__init__.py")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
;; See <https://github.com/ALFA-project-erc/kanon/issues/149>.
|
|
|
|
|
(delete 'sanity-check)
|
|
|
|
|
(add-after 'unpack 'relax-requirements
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "pyproject.toml"
|
|
|
|
|
(("version = \"0.0.0\"") (string-append "version = \"" #$version "\""))
|
|
|
|
|
;; RuntimeError: Unable to detect version control
|
|
|
|
|
;; system. Checked: Git. Not installed: Mercurial, Darcs,
|
|
|
|
|
;; Subversion, Bazaar, Fossil, Pijul. See
|
|
|
|
|
;; <https://github.com/blacklanternsecurity/bbot/issues/1257>.
|
|
|
|
|
(("enable = true") "enable = false"))))
|
|
|
|
|
(add-before 'check 'prepare-test-environment
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list git-minimal
|
|
|
|
|
python-poetry-core
|
|
|
|
|
python-poetry-dynamic-versioning
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-requests-mock))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-pandas-1
|
|
|
|
|
python-requests
|
|
|
|
|
python-scipy
|
|
|
|
|
;; Optional
|
|
|
|
|
python-ipykernel
|
|
|
|
|
python-papermill))
|
|
|
|
|
(home-page "https://dishas.obspm.fr")
|
|
|
|
|
(synopsis "History of astronomy")
|
|
|
|
|
(description "This package provides a history of astronomy library.
|
|
|
|
|
Current Features:
|
|
|
|
|
@itemize
|
|
|
|
|
@item define standard positional numeral systems with standard arithmetics
|
|
|
|
|
(BasedReal)
|
|
|
|
|
@item set your own precision contexts and algorithms on arithmetical
|
|
|
|
|
operations (PrecisionContext)
|
|
|
|
|
@item keep track of all operations
|
|
|
|
|
@item build or import ancient astronomical tables
|
|
|
|
|
@item perform arithmetical and statistical operations
|
|
|
|
|
@item support for BasedReal values
|
|
|
|
|
@item define new calendar types
|
|
|
|
|
@item date conversions
|
|
|
|
|
@item collection of mathematical models used for all kinds of geocentric
|
|
|
|
|
astronomical tables
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-11-24 11:24:38 +00:00
|
|
|
|
(define-public python-mpl-animators
|
|
|
|
|
(package
|
|
|
|
|
(name "python-mpl-animators")
|
2023-12-16 03:52:18 +00:00
|
|
|
|
(version "1.1.1")
|
2022-11-24 11:24:38 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "mpl_animators" version))
|
|
|
|
|
(sha256
|
2023-12-16 03:52:18 +00:00
|
|
|
|
(base32 "078dshs383ny182dac0spg7z0iilcwa0fnwv1vizsr6p1d3ar98b"))))
|
2022-11-24 11:24:38 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest
|
|
|
|
|
python-pytest-mpl
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy))
|
|
|
|
|
(home-page "https://sunpy.org")
|
|
|
|
|
(synopsis "Interactive animations with matplotlib")
|
|
|
|
|
(description
|
|
|
|
|
"The @code{mpl_animators} package provides a set of classes which allow
|
|
|
|
|
the easy construction of interactive matplotlib widget based animations.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-06-11 22:00:59 +00:00
|
|
|
|
(define-public python-naima
|
|
|
|
|
(package
|
|
|
|
|
(name "python-naima")
|
|
|
|
|
(version "0.10.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "naima" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1lng2prl2kzzpgrkj11hl53cvqdh0gpk8cdqkvcg08k3bivzk8q8"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-corner
|
|
|
|
|
python-emcee
|
|
|
|
|
python-h5py
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-pyyaml
|
|
|
|
|
python-scipy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest python-setuptools-scm))
|
|
|
|
|
(home-page "http://github.com/zblz/naima")
|
|
|
|
|
(synopsis "Derivation of non-thermal particle distributions through MCMC spectral fitting")
|
|
|
|
|
(description
|
|
|
|
|
"This package implement functionality for computation of non-thermal
|
|
|
|
|
radiation from relativistic particle populations. It includes tools to
|
|
|
|
|
perform MCMC fitting of radiative models to X-ray, GeV, and TeV spectra using
|
|
|
|
|
@code{emcee}, an affine-invariant ensemble sampler for Markov Chain Monte
|
|
|
|
|
Carlo.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-01-14 23:08:13 +00:00
|
|
|
|
(define-public python-ndcube
|
|
|
|
|
(package
|
|
|
|
|
(name "python-ndcube")
|
2024-06-13 09:20:37 +00:00
|
|
|
|
(version "2.2.2")
|
2024-01-14 23:08:13 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "ndcube" version))
|
|
|
|
|
(sha256
|
2024-06-13 09:20:37 +00:00
|
|
|
|
(base32 "0d82xldinvjw4csql4w3k44ibprbz0b0g5ixq9a5f6c7zbvfc24l"))))
|
2024-01-14 23:08:13 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
2024-06-13 09:20:37 +00:00
|
|
|
|
;; Break cycle: python-ndcube -> python-specutils -> python-ndcube, see
|
|
|
|
|
;; <https://github.com/sunpy/ndcube/issues/733>.
|
|
|
|
|
#:test-flags #~(list "-k" "not test_rebin_specutils")
|
2024-01-14 23:08:13 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-06-13 09:20:37 +00:00
|
|
|
|
(add-after 'unpack 'break-cycle
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "ndcube/tests/test_ndcube.py"
|
|
|
|
|
(("from specutils import Spectrum1D") ""))))
|
2024-01-14 23:08:13 +00:00
|
|
|
|
(add-before 'check 'set-home-env
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Tests require HOME to be set.
|
|
|
|
|
;; Permission denied: '/homeless-shelter'
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-gwcs
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-mpl-animators
|
|
|
|
|
python-numpy
|
|
|
|
|
python-reproject))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-dask
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest-mpl
|
|
|
|
|
python-scipy
|
|
|
|
|
python-setuptools-scm
|
|
|
|
|
python-sunpy))
|
|
|
|
|
(home-page "https://docs.sunpy.org/projects/ndcube/")
|
|
|
|
|
(synopsis "Multi-dimensional contiguous and non-contiguous coordinate aware arrays")
|
|
|
|
|
(description
|
|
|
|
|
"@code{ndcube} is a package for manipulating, inspecting and visualizing
|
|
|
|
|
multi-dimensional contiguous and non-contiguous coordinate-aware data arrays.
|
|
|
|
|
|
|
|
|
|
It combines data, uncertainties, units, metadata, masking, and coordinate
|
|
|
|
|
transformations into classes with unified slicing and generic coordinate
|
|
|
|
|
transformations and plotting/animation capabilities. It is designed to handle
|
|
|
|
|
data of any number of dimensions and axis types (e.g. spatial, temporal,
|
|
|
|
|
spectral, etc.) whose relationship between the array elements and the real world
|
|
|
|
|
can be described by @acronym{WCS, World Coordinate System} translations.")
|
|
|
|
|
(license license:bsd-2)))
|
|
|
|
|
|
2022-01-09 04:38:40 +00:00
|
|
|
|
(define-public python-photutils
|
|
|
|
|
(package
|
|
|
|
|
(name "python-photutils")
|
2024-04-17 22:27:35 +00:00
|
|
|
|
;; PyPI version for source archive is missing minor 0, See
|
|
|
|
|
;; <https://github.com/astropy/photutils/issues/1727>
|
2024-07-01 22:12:54 +00:00
|
|
|
|
(version "1.13.0")
|
2022-01-09 04:38:40 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "photutils" version))
|
|
|
|
|
(sha256
|
2024-07-01 22:12:54 +00:00
|
|
|
|
(base32 "1lhpcxh2adknzlmrddqd712yzpwdlqlw9jn49ajj4kz5z7822dns"))))
|
2023-07-26 23:15:29 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-01-09 04:38:40 +00:00
|
|
|
|
(arguments
|
2023-07-26 23:15:29 +00:00
|
|
|
|
(list
|
2024-01-27 22:21:12 +00:00
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto")
|
2023-07-26 23:15:29 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-04-17 22:27:35 +00:00
|
|
|
|
;; setup.py was removed in 36c3231ce5b80ad470fa78be2e96df859d2daf41
|
|
|
|
|
;; for some unknown reason, which caused the package to fail to
|
|
|
|
|
;; build. It is being recreated based on that commit.
|
|
|
|
|
(add-after 'unpack 'create-setup.py
|
|
|
|
|
(lambda _
|
|
|
|
|
(call-with-output-file "setup.py"
|
|
|
|
|
(lambda (port)
|
|
|
|
|
(format port "from setuptools import setup
|
|
|
|
|
from extension_helpers import get_extensions
|
|
|
|
|
setup(ext_modules=get_extensions())")))))
|
2023-07-26 23:15:29 +00:00
|
|
|
|
;; This file is opened in both install and check phases.
|
|
|
|
|
(add-before 'install 'writable-compiler
|
|
|
|
|
(lambda _ (make-file-writable "photutils/_compiler.c")))
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Cython extensions have to be built before running
|
|
|
|
|
;; the tests. If it's not build it fails with error:
|
|
|
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|
;;
|
|
|
|
|
;; ModuleNotFoundError: No module named
|
|
|
|
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;; 'photutils.geometry.circular_overlap'
|
|
|
|
|
(make-file-writable "photutils/_compiler.c")
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
2022-01-09 04:38:40 +00:00
|
|
|
|
(propagated-inputs
|
2023-12-16 04:18:49 +00:00
|
|
|
|
(list python-astropy
|
|
|
|
|
python-bottleneck
|
|
|
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|
python-gwcs
|
|
|
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|
python-matplotlib
|
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python-numpy
|
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python-rasterio
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python-scikit-image
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python-scikit-learn
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python-scipy
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python-shapely
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python-tqdm))
|
2022-01-09 04:38:40 +00:00
|
|
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|
(native-inputs
|
2024-07-01 22:12:54 +00:00
|
|
|
|
(list python-cython-3
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2022-01-09 04:38:40 +00:00
|
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python-extension-helpers
|
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python-pytest-astropy
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2024-01-27 22:21:12 +00:00
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python-pytest-xdist
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2022-01-09 04:38:40 +00:00
|
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python-setuptools-scm))
|
|
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(home-page "https://github.com/astropy/photutils")
|
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|
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(synopsis "Source detection and photometry")
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(description "Photutils is an Astropy package for detection and photometry
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of astronomical sources.")
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(license license:bsd-3)))
|
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2024-02-15 16:50:08 +00:00
|
|
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;; XXX: The project is archived, maintained fork is available see
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;; <https://github.com/poliastro/poliastro/issues/1640>.
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;; Maintained fork <https://github.com/pleiszenburg/hapsira>.
|
2023-03-08 23:26:37 +00:00
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(define-public python-poliastro
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(package
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(name "python-poliastro")
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(version "0.17.0")
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(source
|
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(origin
|
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;; PyPi tarball lacks tests.
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/poliastro/poliastro")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "1iclyjp0cvm6hp5qf4fzklszxvhj3idkxgb6a9h7xzg9bf5j5gi2"))))
|
|
|
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(build-system pyproject-build-system)
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|
|
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(arguments
|
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|
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|
(list
|
2023-11-17 12:16:13 +00:00
|
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|
#:test-flags
|
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#~(list "-m" "not remote_data"
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;; TODO: Review failing tests later when any upstream
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;; suggestions are provided:
|
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;; https://github.com/poliastro/poliastro/issues/1618
|
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"-k" (string-append "not test_czml_add_trajectory"
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" and not test_czml_custom_packet"
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" and not test_czml_ground_station"
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" and not test_czml_groundtrack"
|
2024-01-09 11:04:23 +00:00
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|
" and not test_czml_preamble"
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;; This fails with "ufunc 'isfinite' not
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|
;; supported for the input types"
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" and not test_porkchop_plotting"))
|
2023-03-08 23:26:37 +00:00
|
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|
#:phases
|
|
|
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|
#~(modify-phases %standard-phases
|
2024-02-15 16:50:08 +00:00
|
|
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|
(add-after 'unpack 'relax-requirements
|
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|
|
(lambda _
|
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|
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|
(substitute* "pyproject.toml"
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|
(("5.0,<6") "5.0,<7"))))
|
2024-01-09 11:04:23 +00:00
|
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|
(add-after 'unpack 'matplotlib-compatibility
|
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|
(lambda _
|
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|
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|
(substitute* "src/poliastro/plotting/static.py"
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|
(("import numpy as np.*" m)
|
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|
|
(string-append m "\
|
|
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|
import itertools\n"))
|
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|
(("( +)self._ax = ax.*" m indent)
|
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|
(string-append m indent
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"\
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|
|
self.colors = itertools.cycle(plt.rcParams[\"axes.prop_cycle\"].by_key()[\"color\"])\n"))
|
|
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|
|
(("color = next\\(self._ax._get_lines.prop_cycler\\)\\[\"color\"\\]")
|
|
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|
|
"color = next(self.colors)"))))
|
2023-03-08 23:26:37 +00:00
|
|
|
|
;; NOTE: Tests take about 7-10 minutes to pass.
|
|
|
|
|
(add-before 'check 'prepare-test-environment
|
|
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|
|
(lambda _
|
2023-11-17 12:16:13 +00:00
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
2023-03-08 23:26:37 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-coverage
|
|
|
|
|
python-hypothesis
|
|
|
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|
python-mypy
|
|
|
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|
python-flit-core
|
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|
python-pytest
|
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|
|
|
python-pytest-cov
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|
python-pytest-doctestplus
|
|
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|
python-pytest-mpl
|
|
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|
python-pytest-mypy))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-astroquery
|
|
|
|
|
python-czml3
|
|
|
|
|
python-jplephem
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numba
|
|
|
|
|
python-numpy
|
|
|
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|
python-pandas
|
|
|
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python-plotly
|
|
|
|
|
python-pyerfa
|
|
|
|
|
python-scipy))
|
|
|
|
|
(home-page "https://www.poliastro.space/")
|
|
|
|
|
(synopsis "Astrodynamics in Python")
|
|
|
|
|
(description
|
|
|
|
|
"POLIASTRO is a Python library for interactive Astrodynamics and Orbital
|
|
|
|
|
Mechanics, with a focus on ease of use, speed, and quick visualization. It
|
|
|
|
|
provides a simple and intuitive API, and handles physical quantities with
|
|
|
|
|
units.
|
|
|
|
|
|
|
|
|
|
Some features include orbit propagation, solution of the Lambert's problem,
|
|
|
|
|
conversion between position and velocity vectors and classical orbital
|
|
|
|
|
elements and orbit plotting, among others. It focuses on interplanetary
|
|
|
|
|
applications, but can also be used to analyze artificial satellites in
|
|
|
|
|
Low-Earth Orbit (LEO).")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2022-12-08 00:02:59 +00:00
|
|
|
|
(define-public python-poppy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-poppy")
|
2023-05-24 21:51:49 +00:00
|
|
|
|
(version "1.1.1")
|
2022-12-08 00:02:59 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "poppy" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2023-05-24 21:51:49 +00:00
|
|
|
|
"0s8rb61q8dz66s8d3qg44kb6bb5gi40zl41ik9wyccgb4kyf3brp"))))
|
2022-12-08 00:02:59 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2024-02-15 15:39:33 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto")))
|
2022-12-08 00:02:59 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
;; XXX: With python-synphot (marked as optional) package added to the list
|
|
|
|
|
;; it tries to download from remote host during tests and fails. Overall
|
|
|
|
|
;; tests take up to 5-8min to pass.
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-docutils
|
|
|
|
|
python-h5py
|
|
|
|
|
python-pandas
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-astropy
|
2024-02-15 15:39:33 +00:00
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-setuptools-scm
|
|
|
|
|
python-sphinx))
|
2022-12-08 00:02:59 +00:00
|
|
|
|
(home-page "https://poppy-optics.readthedocs.io/")
|
|
|
|
|
(synopsis "Physical Optics Propagation in Python")
|
|
|
|
|
(description
|
|
|
|
|
"@acronym{POPPY, Physical Optics Propagation in Python} is a Python package that
|
|
|
|
|
simulates physical optical propagation including diffraction. It implements a
|
|
|
|
|
flexible framework for modeling Fraunhofer and Fresnel diffraction and point
|
|
|
|
|
spread function formation, particularly in the context of astronomical
|
|
|
|
|
telescopes.
|
|
|
|
|
|
|
|
|
|
POPPY was developed as part of a simulation package for the James Webb Space
|
|
|
|
|
Telescope, but is more broadly applicable to many kinds of imaging simulations.
|
|
|
|
|
It is not, however, a substitute for high fidelity optical design software such
|
|
|
|
|
as Zemax or Code V, but rather is intended as a lightweight alternative for
|
|
|
|
|
cases for which diffractive rather than geometric optics is the topic of
|
|
|
|
|
interest, and which require portability between platforms or ease of scripting.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-10-11 01:39:32 +00:00
|
|
|
|
(define-public python-pyavm
|
|
|
|
|
(package
|
|
|
|
|
(name "python-pyavm")
|
|
|
|
|
(version "0.9.6")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "PyAVM" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0vgjqvddq4a5lnmg8msm7fwqs3r6fc748xzvnhyvc387h0z8pdxk"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy python-numpy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pillow python-pytest python-setuptools-scm))
|
|
|
|
|
(home-page "https://astrofrog.github.io/pyavm/")
|
|
|
|
|
(synopsis "Simple pure-python AVM meta-data handling")
|
|
|
|
|
(description
|
|
|
|
|
"PyAVM is a module to represent, read, and write metadata following the
|
|
|
|
|
@acronym{AVM, Astronomy Visualization Metadata} standard provided by
|
|
|
|
|
@url{https://www.virtualastronomy.org/avm_metadata.php, vamp} project.")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2022-01-09 04:37:22 +00:00
|
|
|
|
(define-public python-pyvo
|
|
|
|
|
(package
|
|
|
|
|
(name "python-pyvo")
|
2024-06-13 10:35:06 +00:00
|
|
|
|
(version "1.5.2")
|
2022-01-09 04:37:22 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "pyvo" version))
|
|
|
|
|
(sha256
|
2024-06-13 10:35:06 +00:00
|
|
|
|
(base32 "0wcg3jhfwjd9gqs74mw63sgi1yhmgljx1bwk3mxn0p6fv924r8mq"))))
|
2023-05-24 21:51:43 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-01-09 04:37:22 +00:00
|
|
|
|
(native-inputs
|
2023-05-24 21:51:43 +00:00
|
|
|
|
(list python-pytest-astropy python-requests-mock python-setuptools-scm))
|
2022-01-09 04:37:22 +00:00
|
|
|
|
(propagated-inputs
|
2024-01-14 20:53:57 +00:00
|
|
|
|
(list python-astropy python-pillow python-requests))
|
2022-01-09 04:37:22 +00:00
|
|
|
|
(home-page "https://github.com/astropy/pyvo")
|
|
|
|
|
(synopsis "Access Virtual Observatory data and services")
|
|
|
|
|
(description
|
|
|
|
|
"PyVO is a package providing access to remote data and services of the
|
|
|
|
|
Virtual observatory (VO) using Python.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-01-09 04:38:41 +00:00
|
|
|
|
(define-public python-regions
|
|
|
|
|
(package
|
|
|
|
|
(name "python-regions")
|
2024-04-17 21:24:02 +00:00
|
|
|
|
(version "0.9")
|
2022-01-09 04:38:41 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "regions" version))
|
|
|
|
|
(sha256
|
2024-04-17 21:24:02 +00:00
|
|
|
|
(base32 "0kvfdzqry3vcvphd7ldmppbgn3ab97hbfzwxfrlxls92yi41h3i6"))))
|
2023-12-19 19:23:03 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-01-09 04:38:41 +00:00
|
|
|
|
(arguments
|
2023-12-19 19:23:03 +00:00
|
|
|
|
(list
|
2024-01-27 16:47:30 +00:00
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto")
|
2023-12-19 19:23:03 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-04-17 21:24:02 +00:00
|
|
|
|
;; setup.py was removed in 84c80a280431adda00641cda5264c7de18b43b2f
|
|
|
|
|
;; for some unknown reason, which caused the package to fail to
|
|
|
|
|
;; build. It is being recreated based on that commit.
|
|
|
|
|
(add-after 'unpack 'create-setup.py
|
|
|
|
|
(lambda _
|
|
|
|
|
(call-with-output-file "setup.py"
|
|
|
|
|
(lambda (port)
|
|
|
|
|
(format port "from setuptools import setup
|
|
|
|
|
from extension_helpers import get_extensions
|
|
|
|
|
setup(ext_modules=get_extensions())")))))
|
2023-12-19 19:23:03 +00:00
|
|
|
|
;; This file is opened in both install and check phases.
|
|
|
|
|
(add-before 'install 'writable-compiler
|
|
|
|
|
(lambda _ (make-file-writable "regions/_compiler.c")))
|
2024-04-17 21:24:02 +00:00
|
|
|
|
(add-before 'check 'build-extensions
|
2023-12-19 19:23:03 +00:00
|
|
|
|
(lambda _
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
2022-01-09 04:38:41 +00:00
|
|
|
|
(propagated-inputs
|
2023-12-16 04:40:14 +00:00
|
|
|
|
(list python-astropy
|
|
|
|
|
python-h5py
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy
|
|
|
|
|
python-shapely))
|
2022-01-09 04:38:41 +00:00
|
|
|
|
(native-inputs
|
2024-04-17 21:24:02 +00:00
|
|
|
|
(list python-cython-3
|
2022-01-09 04:38:41 +00:00
|
|
|
|
python-extension-helpers
|
|
|
|
|
python-pytest-arraydiff
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest-runner
|
2024-01-27 16:47:30 +00:00
|
|
|
|
python-pytest-xdist
|
2022-01-09 04:38:41 +00:00
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(home-page "https://github.com/astropy/regions")
|
|
|
|
|
(synopsis "Package for region handling")
|
|
|
|
|
(description "Regions is an Astropy package for region handling.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-06-13 10:16:33 +00:00
|
|
|
|
(define-public python-regularizepsf
|
|
|
|
|
(package
|
|
|
|
|
(name "python-regularizepsf")
|
|
|
|
|
(version "0.3.4")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch) ; no tests data in the PyPI tarball
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/punch-mission/regularizepsf")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "078nklks6hjq0hgv6wpbh2x1m2yh6kmzyfgdzd9q82lxpjy1vq0i"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'relax-requirements
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "setup.py"
|
|
|
|
|
;; numpy==1.26.4
|
|
|
|
|
(("==1.26.4") ">=1.23"))))
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-dill
|
|
|
|
|
python-h5py
|
|
|
|
|
python-lmfit
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-scipy
|
|
|
|
|
python-sep))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-cython
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-mpl
|
|
|
|
|
python-pytest-runner))
|
|
|
|
|
(home-page "https://github.com/punch-mission/regularizepsf")
|
|
|
|
|
(synopsis "Point spread function modeling and regularization")
|
|
|
|
|
(description
|
|
|
|
|
"This package inplements functionality of @acronym{Point Spread Function,
|
|
|
|
|
PSF} describing how the optical system spreads light from sources.")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2022-11-24 11:24:40 +00:00
|
|
|
|
(define-public python-reproject
|
|
|
|
|
(package
|
|
|
|
|
(name "python-reproject")
|
2024-04-18 09:02:33 +00:00
|
|
|
|
(version "0.13.1")
|
2022-11-24 11:24:40 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "reproject" version))
|
|
|
|
|
(sha256
|
2024-04-18 09:02:33 +00:00
|
|
|
|
(base32 "1xk809h2j3zj37l5lx4l87zanf9zxbxajcrff2b2f2i0jpnmxqv3"))))
|
2022-11-24 11:24:40 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
2024-04-18 09:20:21 +00:00
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "--arraydiff"
|
|
|
|
|
"--arraydiff-default-format=fits"
|
|
|
|
|
"--numprocesses" "auto"
|
|
|
|
|
"--pyargs" "reproject")
|
2022-11-24 11:24:40 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-04-18 09:02:33 +00:00
|
|
|
|
;; setup.py was removed in a659a260bdd7635cddc8f33c4ea04a3b6d8c1f84
|
|
|
|
|
;; for some unknown reason, which caused the package to fail to
|
|
|
|
|
;; build. It is being recreated based on that commit.
|
|
|
|
|
;; TODO: Check how to implement it in python-build-system.
|
|
|
|
|
(add-after 'unpack 'create-setup.py
|
|
|
|
|
(lambda _
|
|
|
|
|
(call-with-output-file "setup.py"
|
|
|
|
|
(lambda (port)
|
|
|
|
|
(format port "from setuptools import setup
|
|
|
|
|
from extension_helpers import get_extensions
|
|
|
|
|
setup(ext_modules=get_extensions())")))))
|
2022-11-24 11:24:40 +00:00
|
|
|
|
(add-before 'install 'writable-compiler
|
|
|
|
|
(lambda _
|
|
|
|
|
(make-file-writable "reproject/_compiler.c")))
|
|
|
|
|
(add-before 'check 'writable-compiler
|
|
|
|
|
(lambda _
|
|
|
|
|
(make-file-writable "reproject/_compiler.c")))
|
2024-04-18 09:20:21 +00:00
|
|
|
|
(add-before 'check 'prepare-test-environment
|
2022-11-24 11:24:40 +00:00
|
|
|
|
(lambda _
|
2024-04-18 09:20:21 +00:00
|
|
|
|
(setenv "HOME" "/tmp")
|
|
|
|
|
;; Cython extensions have to be built before running the tests.
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
2022-11-24 11:24:40 +00:00
|
|
|
|
(propagated-inputs
|
2023-07-26 23:15:43 +00:00
|
|
|
|
(list python-asdf
|
|
|
|
|
python-astropy
|
2022-11-24 11:24:40 +00:00
|
|
|
|
python-astropy-healpix
|
2023-07-26 23:15:43 +00:00
|
|
|
|
python-click
|
|
|
|
|
python-cloudpickle
|
|
|
|
|
python-dask
|
|
|
|
|
python-fsspec
|
|
|
|
|
python-gwcs
|
2022-11-24 11:24:40 +00:00
|
|
|
|
python-numpy
|
2023-07-26 23:15:43 +00:00
|
|
|
|
python-pyvo
|
|
|
|
|
python-scipy
|
|
|
|
|
python-shapely
|
|
|
|
|
python-zarr))
|
2022-11-24 11:24:40 +00:00
|
|
|
|
(native-inputs
|
2024-04-18 09:02:33 +00:00
|
|
|
|
(list python-cython-3
|
2022-11-24 11:24:40 +00:00
|
|
|
|
python-extension-helpers
|
2024-04-18 09:20:21 +00:00
|
|
|
|
python-pytest
|
2022-11-24 11:24:40 +00:00
|
|
|
|
python-pytest-astropy
|
2024-04-18 09:20:21 +00:00
|
|
|
|
python-pytest-xdist
|
|
|
|
|
;; python-sunpy ; circular dependencies, test optional
|
2023-07-26 23:15:43 +00:00
|
|
|
|
python-setuptools-scm))
|
2022-11-24 11:24:40 +00:00
|
|
|
|
(home-page "https://reproject.readthedocs.io")
|
|
|
|
|
(synopsis "Astronomical image reprojection in Python")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a functionality to reproject astronomical images using
|
|
|
|
|
various techniques via a uniform interface, where reprojection is the
|
|
|
|
|
re-gridding of images from one world coordinate system to another e.g.
|
|
|
|
|
changing the pixel resolution, orientation, coordinate system.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-11-28 23:27:18 +00:00
|
|
|
|
(define-public python-sgp4
|
|
|
|
|
(package
|
|
|
|
|
(name "python-sgp4")
|
2023-11-17 12:16:04 +00:00
|
|
|
|
(version "2.23")
|
2022-11-28 23:27:18 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "sgp4" version))
|
|
|
|
|
(sha256
|
2023-11-17 12:16:04 +00:00
|
|
|
|
(base32 "0aalbmldks6ykgkcxwkvnp04q0avhv903m5zwvg8i7zvl99xrbfq"))))
|
2024-05-20 22:12:30 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-11-28 23:27:18 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-numpy))
|
|
|
|
|
(home-page "https://github.com/brandon-rhodes/python-sgp4")
|
|
|
|
|
(synopsis "Track earth satellite TLE orbits using SGP4")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a Python implementation for computations of the
|
|
|
|
|
position and velocity of an earth-orbiting satellite, given the satellite’s
|
|
|
|
|
@acronym{TLE, Two-line element set} orbital elements from a source like
|
|
|
|
|
@url{CelesTrak, https://celestrak.org/}.
|
|
|
|
|
|
|
|
|
|
It implements the most recent version of @acronym{SGP4, Simplified General
|
|
|
|
|
Perturbation models}, and is regularly run against the SGP4 test suite to make
|
|
|
|
|
sure that its satellite position predictions agree to within 0.1 mm with the
|
|
|
|
|
predictions of the standard distribution of the algorithm. This error is far
|
|
|
|
|
less than the 1–3 km/day by which satellites themselves deviate from the ideal
|
|
|
|
|
orbits described in TLE files.")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2022-11-24 11:24:41 +00:00
|
|
|
|
(define-public python-sunpy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-sunpy")
|
2024-07-17 22:13:01 +00:00
|
|
|
|
(version "5.1.5")
|
2022-11-24 11:24:41 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "sunpy" version))
|
|
|
|
|
(sha256
|
2024-07-17 22:13:01 +00:00
|
|
|
|
(base32 "1jdkkcv247chsj08wrxxv0m577ji5cg7mxx5pw7q0ahmnq93xk2p"))))
|
2022-11-24 11:24:41 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
2023-05-24 21:51:38 +00:00
|
|
|
|
#:test-flags
|
2024-01-28 17:38:20 +00:00
|
|
|
|
#~(list
|
2024-07-17 22:13:01 +00:00
|
|
|
|
"--numprocesses" "auto"
|
2024-01-28 17:38:20 +00:00
|
|
|
|
"-k" (string-append
|
|
|
|
|
;; XXX: Failed: DID NOT RAISE <class 'ModuleNotFoundError'>
|
|
|
|
|
;; It struggles to find python-opencsv package info with
|
|
|
|
|
;; 'importlib.metadata'
|
|
|
|
|
"not test_main_nonexisting_module"
|
|
|
|
|
" and not test_main_stdlib_module")
|
|
|
|
|
;; Requries SpicePy not packed in Guix yet.
|
|
|
|
|
"--ignore=sunpy/coordinates/tests/test_spice.py")
|
2022-11-24 11:24:41 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-01-28 17:38:20 +00:00
|
|
|
|
(add-after 'unpack 'relax-requirements
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "setup.cfg"
|
|
|
|
|
;; It's already updated in master branch, but not released yet.
|
|
|
|
|
;; drms>=0.6.1,<0.7.0
|
|
|
|
|
(("0.7.0") "0.7.2"))))
|
2022-11-24 11:24:41 +00:00
|
|
|
|
(add-before 'install 'writable-compiler
|
|
|
|
|
(lambda _
|
|
|
|
|
(make-file-writable "sunpy/_compiler.c")))
|
|
|
|
|
(add-before 'check 'prepare-test-environment
|
|
|
|
|
(lambda _
|
2024-01-14 21:51:16 +00:00
|
|
|
|
(setenv "HOME" "/tmp")
|
|
|
|
|
(call-with-output-file "pytest.ini"
|
|
|
|
|
(lambda (port)
|
|
|
|
|
(format port "[pytest]
|
|
|
|
|
python_files = test_*.py"))))))))
|
2022-11-24 11:24:41 +00:00
|
|
|
|
(native-inputs
|
2023-05-24 21:51:38 +00:00
|
|
|
|
(list opencv ; For tests, includes OpenCV-Python
|
|
|
|
|
python-aiohttp
|
2022-11-24 11:24:41 +00:00
|
|
|
|
python-extension-helpers
|
|
|
|
|
python-hvpy
|
|
|
|
|
python-packaging
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest-doctestplus
|
|
|
|
|
python-pytest-mock
|
|
|
|
|
python-pytest-mpl
|
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list parfive
|
|
|
|
|
python-asdf
|
|
|
|
|
python-asdf-astropy
|
|
|
|
|
python-astropy
|
|
|
|
|
python-beautifulsoup4
|
|
|
|
|
python-cdflib
|
|
|
|
|
python-dask
|
|
|
|
|
python-dateutil
|
|
|
|
|
python-drms
|
|
|
|
|
python-glymur
|
|
|
|
|
python-h5netcdf
|
|
|
|
|
python-h5py
|
|
|
|
|
python-hypothesis
|
|
|
|
|
python-jplephem
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-mpl-animators
|
|
|
|
|
python-numpy
|
|
|
|
|
python-pandas
|
|
|
|
|
python-reproject
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-scipy
|
2024-01-14 21:51:16 +00:00
|
|
|
|
;; python-spiceypy ; Not packed yet in Guix, long jorney.
|
2022-11-24 11:24:41 +00:00
|
|
|
|
python-sqlalchemy
|
|
|
|
|
python-tqdm
|
|
|
|
|
python-zeep))
|
|
|
|
|
(home-page "https://sunpy.org")
|
|
|
|
|
(synopsis "Python library for Solar Physics")
|
|
|
|
|
(description
|
|
|
|
|
"SunPy is package for solar physics and is meant to be a free alternative to the
|
|
|
|
|
SolarSoft data analysis environment.")
|
|
|
|
|
(license license:bsd-2)))
|
|
|
|
|
|
2024-01-29 13:00:10 +00:00
|
|
|
|
(define-public python-sunpy-soar
|
|
|
|
|
(package
|
|
|
|
|
(name "python-sunpy-soar")
|
|
|
|
|
(version "1.10")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "sunpy-soar" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0pb7dr06n20hdhlqf8npb4j1qb5034cgwqi3iciqdi1wxyy5pjc6"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
;; Disabe tests requireing network access.
|
|
|
|
|
#~(list "-k" (string-append
|
|
|
|
|
"not test_search"
|
|
|
|
|
" and not test_search_low_latency"
|
|
|
|
|
" and not test_insitu_search"
|
|
|
|
|
" and not test_no_results"
|
|
|
|
|
" and not test_no_instrument"
|
|
|
|
|
" and not test_download_path"
|
|
|
|
|
" and not test_search_soop"
|
|
|
|
|
" and not test_when_soar_provider_passed"
|
|
|
|
|
" and not test_when_sdac_provider_passed"
|
|
|
|
|
" and not test_when_wrong_provider_passed"))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'set-home-env
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Tests require HOME to be set.
|
|
|
|
|
;; Permission denied: '/homeless-shelter'
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-sunpy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest))
|
|
|
|
|
(home-page "https://docs.sunpy.org/projects/soar")
|
|
|
|
|
(synopsis "Solar Orbiter Archive plugin for SunPy")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a @code{sunpy} FIDO plugin for accessing data in the
|
|
|
|
|
@acronym{Solar Orbiter Archive, SOAR}.")
|
|
|
|
|
(license license:bsd-2)))
|
|
|
|
|
|
2022-01-04 15:42:24 +00:00
|
|
|
|
(define-public python-astral
|
|
|
|
|
(package
|
|
|
|
|
(name "python-astral")
|
2023-05-24 21:51:48 +00:00
|
|
|
|
(version "3.2")
|
2022-01-04 15:42:24 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "astral" version))
|
|
|
|
|
(sha256
|
2023-05-24 21:51:48 +00:00
|
|
|
|
(base32 "121xag65rmv6pszbi3d206yz3jfwmpkf0jxjrxrd2scy5r0knz4v"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
2022-01-04 15:42:24 +00:00
|
|
|
|
(arguments
|
2023-05-24 21:51:48 +00:00
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
;; XXX: Disable tests which require newer version of python-pytz.
|
|
|
|
|
;; No time zone found with key Pacific/Auckland
|
|
|
|
|
#~(list "-k" (string-append
|
|
|
|
|
"not test_TimezoneLookup"
|
|
|
|
|
" and not test_Sun"
|
|
|
|
|
" and not test_Dawn"
|
|
|
|
|
" and not test_Sunrise"
|
|
|
|
|
" and not test_SolarNoon"
|
|
|
|
|
" and not test_Dusk"
|
|
|
|
|
" and not test_Sunset"
|
|
|
|
|
" and not test_SolarElevation"
|
|
|
|
|
" and not test_SolarAzimuth"
|
|
|
|
|
" and not test_TimeAtAltitude"
|
|
|
|
|
" and not test_MoonNoDate"
|
|
|
|
|
" and not test_lookup"
|
|
|
|
|
" and not test_tzinfo"
|
|
|
|
|
" and not test_australia"
|
|
|
|
|
" and not test_adak"
|
|
|
|
|
" and not test_australia"
|
|
|
|
|
" and not test_Elevation_NonNaive"
|
|
|
|
|
" and not test_Wellington"
|
|
|
|
|
" and not test_Sun_Local_tzinfo"
|
|
|
|
|
" and not test_Sun_Local_str"
|
|
|
|
|
" and not test_SolarZenith_London"
|
|
|
|
|
" and not test_SolarZenith_Riyadh"
|
|
|
|
|
" and not test_moonrise_utc"
|
|
|
|
|
" and not test_moonrise_wellington"
|
|
|
|
|
" and not test_moonset_wellington"))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'prepare-test-environment
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
2022-01-04 15:42:24 +00:00
|
|
|
|
(native-inputs
|
2023-05-24 21:51:48 +00:00
|
|
|
|
(list python-freezegun
|
|
|
|
|
python-poetry-core
|
|
|
|
|
python-pytest
|
|
|
|
|
python-setuptools-scm))
|
2022-01-04 15:42:24 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-dataclasses python-pytest python-pytz))
|
|
|
|
|
(home-page "https://github.com/sffjunkie/astral")
|
|
|
|
|
(synopsis "Calculations for the position of the sun and moon")
|
|
|
|
|
(description "Astral is a Python module that calculates times for various
|
|
|
|
|
positions of the sun: dawn, sunrise, solar noon, sunset, dusk, solar
|
|
|
|
|
elevation, solar azimuth, rahukaalam, and the phases of the moon.")
|
|
|
|
|
(license license:asl2.0)))
|
|
|
|
|
|
2023-10-11 01:39:35 +00:00
|
|
|
|
(define-public python-spectral-cube
|
|
|
|
|
(package
|
|
|
|
|
(name "python-spectral-cube")
|
2023-12-16 19:56:10 +00:00
|
|
|
|
(version "0.6.5")
|
2023-10-11 01:39:35 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "spectral-cube" version))
|
|
|
|
|
(sha256
|
2023-12-16 19:56:10 +00:00
|
|
|
|
(base32 "0cqxgmk46gv2qa2kls8fph105lgwbwf13hvizh6w85mzgypyp740"))))
|
2023-10-11 01:39:35 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2024-01-27 21:39:22 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto")))
|
2023-10-11 01:39:35 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
2024-01-27 21:39:22 +00:00
|
|
|
|
;; XXX: Currently failing in upstream as it's optional silent
|
|
|
|
|
;; until a new version is released, see:
|
|
|
|
|
;; <https://github.com/aplpy/aplpy/issues/492>.
|
|
|
|
|
;;
|
|
|
|
|
;; python-aplpy
|
2023-10-11 01:39:35 +00:00
|
|
|
|
python-casa-formats-io
|
|
|
|
|
python-dask
|
|
|
|
|
python-distributed
|
|
|
|
|
python-fsspec
|
|
|
|
|
;; python-glue-core ; Not packed http://glueviz.org/, optional.
|
|
|
|
|
python-joblib
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-radio-beam
|
|
|
|
|
python-reproject
|
|
|
|
|
python-scipy
|
|
|
|
|
python-six
|
|
|
|
|
;; python-yt ; Not packed https://yt-project.org/, optional.
|
|
|
|
|
python-zarr))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list ;; XXX: Introduce cycle with pvextractor, listed as extra requiremnts
|
|
|
|
|
;; in [noviz] option.
|
|
|
|
|
;; python-pvextractor
|
|
|
|
|
python-pytest-astropy
|
2024-01-27 21:39:22 +00:00
|
|
|
|
python-pytest-xdist
|
2023-10-11 01:39:35 +00:00
|
|
|
|
python-regions
|
2023-10-31 16:01:05 +00:00
|
|
|
|
python-setuptools-scm))
|
2023-10-11 01:39:35 +00:00
|
|
|
|
(home-page "https://spectral-cube.readthedocs.io/en/latest/")
|
|
|
|
|
(synopsis "Library for reading and analyzing astrophysical spectral data cubes")
|
|
|
|
|
(description
|
|
|
|
|
"The spectral-cube package provides an easy way to read, manipulate,
|
|
|
|
|
analyze, and write data cubes with two positional dimensions and one spectral
|
|
|
|
|
dimension, optionally with Stokes parameters.
|
|
|
|
|
|
|
|
|
|
It provides the following main features:
|
|
|
|
|
@itemize
|
|
|
|
|
@item A uniform interface to spectral cubes, robust to the wide range of conventions
|
|
|
|
|
of axis order, spatial projections, and spectral units that exist in the wild.
|
|
|
|
|
@item Easy extraction of cube sub-regions using physical coordinates.
|
|
|
|
|
@item Ability to easily create, combine, and apply masks to datasets.
|
|
|
|
|
@item Basic summary statistic methods like moments and array aggregates.
|
|
|
|
|
@item Designed to work with datasets too large to load into memory.
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-01-14 23:25:14 +00:00
|
|
|
|
(define-public python-specutils
|
|
|
|
|
(package
|
|
|
|
|
(name "python-specutils")
|
2024-05-20 22:12:46 +00:00
|
|
|
|
(version "1.15.0")
|
2024-01-14 23:25:14 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "specutils" version))
|
|
|
|
|
(sha256
|
2024-05-20 22:12:46 +00:00
|
|
|
|
(base32 "0gx90dn9vmbvd7a53xb7a51jabskrad52g7imgy0ih1jchdls2pj"))))
|
2024-01-14 23:25:14 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; Disabling test requiring access to download
|
|
|
|
|
;; <https://datacenter.iers.org/data/9/finals2000A.all>.
|
|
|
|
|
;; XXX: Check if test data may be packed as standalone package.
|
|
|
|
|
#:test-flags #~(list "-k" "not test_create_spectral_axis")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'set-home-env
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Tests require HOME to be set.
|
|
|
|
|
;; Permission denied: '/homeless-shelter'
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list ;; python-stdatamodels ; cycle with python-synphot, optional.
|
|
|
|
|
python-asdf
|
|
|
|
|
python-asdf-astropy
|
|
|
|
|
python-gwcs
|
|
|
|
|
python-ndcube
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-matplotlib
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-setuptools-scm
|
|
|
|
|
python-spectral-cube))
|
|
|
|
|
(home-page "https://specutils.readthedocs.io/")
|
|
|
|
|
(synopsis "Package for spectroscopic astronomical data")
|
|
|
|
|
(description
|
|
|
|
|
"@code{specutils} is a Python package for representing, loading, manipulating,
|
|
|
|
|
and analyzing astronomical spectroscopic data. The generic data containers and
|
|
|
|
|
accompanying modules provide a toolbox that the astronomical community can use
|
|
|
|
|
to build more domain-specific packages. For more details about the underlying
|
|
|
|
|
principles,
|
|
|
|
|
see @url{https://github.com/astropy/astropy-APEs/blob/main/APE13.rst, APE13}.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-05-23 22:44:58 +00:00
|
|
|
|
(define-public python-spherical-geometry
|
|
|
|
|
(package
|
|
|
|
|
(name "python-spherical-geometry")
|
2024-06-18 08:54:28 +00:00
|
|
|
|
(version "1.3.2")
|
2022-05-23 22:44:58 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/spacetelescope/spherical_geometry")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2024-06-18 08:54:28 +00:00
|
|
|
|
(base32 "0znzfy3bmnsncvahf8qdav0c9403fn99d1gp25lainhv7kxfk44c"))))
|
2023-10-27 22:14:47 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-05-23 22:44:58 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
2023-10-27 22:14:47 +00:00
|
|
|
|
;; XXX: Disable one failing test
|
|
|
|
|
;; See https://github.com/spacetelescope/spherical_geometry/issues/252
|
|
|
|
|
#:test-flags #~(list "-k" "not test_overlap")
|
2022-05-23 22:44:58 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'preparations
|
|
|
|
|
(lambda _
|
2023-10-27 22:14:46 +00:00
|
|
|
|
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
|
2022-05-23 22:44:58 +00:00
|
|
|
|
;; Use our own libraries in place of bundles.
|
2023-10-27 22:14:47 +00:00
|
|
|
|
(setenv "USE_SYSTEM_QD" "1")))
|
2023-12-16 22:49:36 +00:00
|
|
|
|
(add-before 'check 'prepare-test-environment
|
2023-10-27 22:14:47 +00:00
|
|
|
|
(lambda _
|
2023-12-16 22:49:36 +00:00
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace")
|
|
|
|
|
(call-with-output-file "pytest.ini"
|
|
|
|
|
(lambda (port)
|
|
|
|
|
(format port "[pytest]
|
|
|
|
|
python_files = test_*.py"))))))))
|
2022-05-23 22:44:58 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest
|
2023-12-16 22:49:36 +00:00
|
|
|
|
python-pytest-astropy-header
|
2022-05-23 22:44:58 +00:00
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(inputs
|
|
|
|
|
(list qd))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-numpy))
|
2023-12-16 22:49:36 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/spherical_geometry")
|
2022-05-23 22:44:58 +00:00
|
|
|
|
(synopsis "Python astronimical package for handling spherical polygons")
|
|
|
|
|
(description
|
|
|
|
|
"The @code{spherical_geometry} library is a Python package for handling
|
|
|
|
|
spherical polygons that represent arbitrary regions of the sky.")
|
|
|
|
|
;; LICENSE.rst Association of Universities for Research in Astronomy (AURA)
|
|
|
|
|
;; QD_LIBRARY_LICENSE.rst for bandeled QD source
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-06-13 10:49:32 +00:00
|
|
|
|
(define-public python-statmorph
|
|
|
|
|
(package
|
|
|
|
|
(name "python-statmorph")
|
|
|
|
|
(version "0.5.7")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "statmorph" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "06rbwrqlvdzn9innx05kjjmm4mmacd8kwwsfdf5idbwzby5ny5lw"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-numpy
|
|
|
|
|
python-photutils
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-scipy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest))
|
|
|
|
|
(home-page "https://github.com/vrodgom/statmorph")
|
|
|
|
|
(synopsis "Non-parametric morphological diagnostics of galaxy images")
|
|
|
|
|
(description
|
|
|
|
|
"The package @code{statmorph} implements functionality of calculating
|
|
|
|
|
non-parametric morphological diagnostics of galaxy images (e.g., Gini-M_{20}
|
|
|
|
|
and CAS statistics), as well as fitting 2D Sérsic profiles.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:34 +00:00
|
|
|
|
(define-public python-stsci-image
|
|
|
|
|
(package
|
|
|
|
|
(name "python-stsci-image")
|
2024-06-13 13:40:43 +00:00
|
|
|
|
(version "2.3.9")
|
2024-04-03 15:26:49 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
2024-05-20 22:12:45 +00:00
|
|
|
|
(uri (pypi-uri "stsci_image" version))
|
2024-04-03 15:26:49 +00:00
|
|
|
|
(sha256
|
2024-06-13 13:40:43 +00:00
|
|
|
|
(base32 "0w7s93jsz61ccbhj7irl28q4jgiwa7y9k8pfj24q8vc9zvs530pj"))))
|
2023-05-30 19:58:34 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
2024-04-03 15:26:49 +00:00
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Cython extensions have to be built before running the tests.
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
2023-05-30 19:58:34 +00:00
|
|
|
|
(propagated-inputs (list python-numpy python-scipy))
|
|
|
|
|
(native-inputs (list python-pytest python-setuptools-scm))
|
|
|
|
|
(home-page "https://github.com/spacetelescope/stsci.image")
|
|
|
|
|
(synopsis "Image array manipulation functions")
|
|
|
|
|
(description
|
2024-04-03 15:26:49 +00:00
|
|
|
|
"This package provides a Python module to various @acronym{STScI, Space
|
|
|
|
|
Telescope Science Institute} image array manipulation functions.")
|
2023-05-30 19:58:34 +00:00
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:35 +00:00
|
|
|
|
(define-public python-stsci-imagestats
|
|
|
|
|
(package
|
|
|
|
|
(name "python-stsci-imagestats")
|
2024-06-18 09:01:15 +00:00
|
|
|
|
(version "1.8.3")
|
2023-05-30 19:58:35 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "stsci.imagestats" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-04-03 15:24:31 +00:00
|
|
|
|
"1nmya85bf2747c9ggya6my5b1slk6g2a7bk16rdv8r5a4ah9hda5"))))
|
2023-11-17 12:16:08 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2023-05-30 19:58:35 +00:00
|
|
|
|
(arguments
|
2023-12-18 13:42:52 +00:00
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Cython extensions have to be built before running the tests.
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
2023-05-30 19:58:35 +00:00
|
|
|
|
(propagated-inputs (list python-numpy))
|
2023-12-18 13:42:52 +00:00
|
|
|
|
(native-inputs (list python-pytest python-setuptools-scm))
|
2023-05-30 19:58:35 +00:00
|
|
|
|
(home-page "https://stsciimagestats.readthedocs.io/en/latest/")
|
|
|
|
|
(synopsis "Compute sigma-clipped statistics on data arrays")
|
|
|
|
|
(description
|
|
|
|
|
"@code{stsci.imagestats} is a package designed to compute various
|
|
|
|
|
statistics on image data using sigma-clipping iterations. It is designed to
|
|
|
|
|
replicate core behaviour of the IRAF's
|
|
|
|
|
@url{http://stsdas.stsci.edu/cgi-bin/gethelp.cgi?imstatistics, imstatistics
|
|
|
|
|
task}.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:36 +00:00
|
|
|
|
(define-public python-stsci-stimage
|
|
|
|
|
(package
|
|
|
|
|
(name "python-stsci-stimage")
|
2024-04-20 21:38:33 +00:00
|
|
|
|
;; PyPI version was 0.2.8 but the latest version tag on GiHub was 0.2.7,
|
|
|
|
|
;; see <https://github.com/spacetelescope/stsci.stimage/issues/38>
|
2024-06-21 07:03:36 +00:00
|
|
|
|
(version "0.2.9")
|
2023-05-30 19:58:36 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method url-fetch)
|
2024-04-20 21:21:48 +00:00
|
|
|
|
(uri (pypi-uri "stsci_stimage" version))
|
2023-05-30 19:58:36 +00:00
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-06-21 07:03:36 +00:00
|
|
|
|
"18sqmjiyn76hzkmv3g8549vfygi136gnar6pb0s7wb44j7cvc0in"))))
|
2023-05-30 19:58:36 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
2024-06-21 07:03:36 +00:00
|
|
|
|
#:build-backend "setuptools.build_meta"
|
2024-04-20 21:38:33 +00:00
|
|
|
|
#:test-flags #~(list "test_c")
|
2023-11-17 12:16:20 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-04-20 21:38:33 +00:00
|
|
|
|
;; Test steps are taken from GitHub Actions, see
|
|
|
|
|
;; <https://github.com/spacetelescope/stsci.stimage/issues/27>
|
|
|
|
|
(add-before 'check 'waf-configure-build
|
2023-11-17 12:16:20 +00:00
|
|
|
|
(lambda _
|
|
|
|
|
(copy-file (string-append
|
2024-04-20 21:38:33 +00:00
|
|
|
|
#$(this-package-native-input "python-waf") "/bin/waf")
|
|
|
|
|
"waf")
|
|
|
|
|
(invoke "python" "waf" "configure" "build"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-numpy))
|
2023-11-17 12:16:20 +00:00
|
|
|
|
(native-inputs
|
2024-06-21 07:03:36 +00:00
|
|
|
|
(list python-pytest
|
|
|
|
|
python-wheel
|
|
|
|
|
python-setuptools-scm
|
|
|
|
|
python-waf))
|
2023-05-30 19:58:36 +00:00
|
|
|
|
(home-page "https://stscistimage.readthedocs.io/en/latest/")
|
|
|
|
|
(synopsis "STScI image processing")
|
2024-04-20 21:38:33 +00:00
|
|
|
|
(description
|
|
|
|
|
"This package provides an astronomical Python package with image
|
|
|
|
|
processing functions: @code{xyxymatch}, @code{geomap}.")
|
2023-05-30 19:58:36 +00:00
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:47 +00:00
|
|
|
|
(define-public python-stcal
|
|
|
|
|
(package
|
|
|
|
|
(name "python-stcal")
|
2024-06-13 11:13:10 +00:00
|
|
|
|
(version "1.7.1")
|
2023-10-08 23:40:16 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "stcal" version))
|
|
|
|
|
(sha256
|
2024-06-13 11:13:10 +00:00
|
|
|
|
(base32 "003ygbfa25awvy2zjfxd1k4f1aklsvd53sdk7qa0w42v6ys2kabs"))))
|
2023-05-30 19:58:47 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
2023-10-08 23:40:16 +00:00
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-03-11 21:03:06 +00:00
|
|
|
|
(add-before 'build 'silent-check-for-opencv
|
|
|
|
|
(lambda _
|
|
|
|
|
;; XXX: Can't detect opencv-python version. The input opencv
|
|
|
|
|
;; might not set the version correctly.
|
|
|
|
|
(substitute* "pyproject.toml"
|
|
|
|
|
((".*opencv-python-headless.*") ""))))
|
2023-10-08 23:40:16 +00:00
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Cython extensions have to be built before running the tests.
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list opencv ;Provides OpenCV-Python
|
2024-01-27 15:54:04 +00:00
|
|
|
|
python-asdf
|
2023-10-08 23:40:16 +00:00
|
|
|
|
python-astropy
|
2024-01-14 21:15:43 +00:00
|
|
|
|
python-gwcs
|
2023-10-08 23:40:16 +00:00
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy))
|
|
|
|
|
(native-inputs
|
2024-01-14 21:15:43 +00:00
|
|
|
|
(list python-cython-3
|
2023-10-08 23:40:16 +00:00
|
|
|
|
python-psutil
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-cov
|
|
|
|
|
python-pytest-doctestplus
|
|
|
|
|
python-setuptools-scm))
|
2023-05-30 19:58:47 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/stcal")
|
|
|
|
|
(synopsis "STScI tools and algorithms used in calibration pipelines")
|
|
|
|
|
(description "STScI tools and algorithms used in calibration pipelines.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:42 +00:00
|
|
|
|
(define-public python-stdatamodels
|
|
|
|
|
(package
|
|
|
|
|
(name "python-stdatamodels")
|
2024-07-02 13:04:12 +00:00
|
|
|
|
(version "2.0.0")
|
2023-10-08 23:40:18 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "stdatamodels" version))
|
|
|
|
|
(sha256
|
2024-07-02 13:04:12 +00:00
|
|
|
|
(base32 "0a47xf1zv71kv166z6rd9v75bw0jjmg70180af4yi4v4y7gnxvmm"))))
|
2023-05-30 19:58:42 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
2024-03-12 18:47:54 +00:00
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto"
|
|
|
|
|
;; Disable tests requiring access to CRDS servers to download
|
|
|
|
|
;; ~500MiB of data.
|
|
|
|
|
"-k" "not test_crds_selectors_vs_datamodel")
|
2023-10-08 23:40:18 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'set-home
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf
|
|
|
|
|
python-asdf-astropy
|
|
|
|
|
python-astropy
|
|
|
|
|
python-numpy
|
|
|
|
|
python-psutil))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-crds
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-doctestplus
|
2024-03-12 18:47:54 +00:00
|
|
|
|
python-pytest-xdist
|
2023-10-08 23:40:18 +00:00
|
|
|
|
python-scipy
|
|
|
|
|
python-setuptools-scm))
|
2023-05-30 19:58:42 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/stdatamodels")
|
|
|
|
|
(synopsis
|
|
|
|
|
"Core support for DataModel classes used in calibration pipelines")
|
|
|
|
|
(description
|
2023-10-08 23:40:18 +00:00
|
|
|
|
"Provides @code{DataModel}, which is the base class for data models
|
|
|
|
|
implemented in the @acronym{JWST, James Webb Space Telescope} and
|
|
|
|
|
@acronym{Roman, Nancy Grace Roman Space Telescope} calibration software.")
|
2023-05-30 19:58:42 +00:00
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:43 +00:00
|
|
|
|
(define-public python-stpipe
|
|
|
|
|
(package
|
|
|
|
|
(name "python-stpipe")
|
2024-07-02 12:26:13 +00:00
|
|
|
|
(version "0.6.0")
|
2024-07-02 12:29:54 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "stpipe" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0iipbz5ydxxxk44q8ab0ylk7jpxjfhag4vgkhvpj67zs4s45sd8a"))
|
|
|
|
|
(modules '((guix build utils)))
|
|
|
|
|
(snippet
|
|
|
|
|
'(begin
|
|
|
|
|
;; Replace reference to external configobj.
|
|
|
|
|
(substitute* (find-files "." "\\.py$")
|
|
|
|
|
(("from astropy.extern import configobj") "import configobj")
|
|
|
|
|
(("from astropy.extern.configobj import validate") "import validate")
|
|
|
|
|
(("from astropy.extern.configobj.configobj import ") "from configobj import ")
|
|
|
|
|
(("from astropy.extern.configobj.validate import ") "from validate import "))))))
|
2023-10-08 23:40:19 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; See https://github.com/spacetelescope/stpipe/issues/114
|
|
|
|
|
#:test-flags #~(list "-k" "not test_roman_datamodel")))
|
2023-05-30 19:58:43 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
gnu: python-asdf: Adjust inputs.
python-asdf requires python-semantic-version during runtime which may be
reproduced by:
guix shell python-asdf python -- python3 -c 'import asdf'
<...>
ModuleNotFoundError: No module named 'semantic_version'
* gnu/packages/astronomy.scm (python-asdf): Adjust inputs.
[native-inputs]: Remove python-semantic-version.
[propagated-inputs]: Add python-semantic-version.
(python-asdf-astropy, python-asdf-compression, python-asdf-coordinates-schemas,
python-asdf-wcs-schemas, python-asdf-zarr, python-astroalignn, python-ccdproc,
python-crds, python-ginga, python-gwcs, python-photutils, python-rad,
python-reproject, python-roman-datamodels, python-spectral-cube,
python-specutils, python-stcal, python-stdatamodels, python-stpipe,
python-stsynphot, python-sunpy, python-synphot, python-tweakwcs): Remove
python-semantic-version from native or propagated inputs.
Change-Id: I96bf57f77c327f4ff208e0b173e84bcdd4c287da
Reported-by: Iliya Tikhonenko <tikhonenko@mpe.mpg.de>
2024-04-20 20:53:00 +00:00
|
|
|
|
(propagated-inputs
|
2024-07-02 12:29:54 +00:00
|
|
|
|
(list python-asdf
|
|
|
|
|
python-astropy
|
|
|
|
|
python-crds
|
|
|
|
|
python-stdatamodels))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest
|
|
|
|
|
python-pytest-doctestplus
|
|
|
|
|
python-pytest-openfiles
|
|
|
|
|
python-setuptools-scm))
|
2023-05-30 19:58:43 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/stpipe")
|
|
|
|
|
(synopsis "Framework for calibration pipeline software")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides base classes and command-line tools for
|
|
|
|
|
implementing calibration pipeline software.")
|
|
|
|
|
;; LICENSE Association of Universities for Research in Astronomy (AURA)
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:39 +00:00
|
|
|
|
(define-public python-stsynphot
|
|
|
|
|
(package
|
|
|
|
|
(name "python-stsynphot")
|
2023-12-18 13:52:04 +00:00
|
|
|
|
(version "1.3.0")
|
2023-05-30 19:58:39 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "stsynphot" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2023-12-18 13:52:04 +00:00
|
|
|
|
"15m3vy39mc7rh1mrxs8d2bs0bx5vv632m6wg8n15fqjzhadqy7j5"))))
|
2023-05-30 19:58:39 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; XXX: Tests fails on missing file, it might need to be downloaded,
|
|
|
|
|
;; disable them for now. astropy.utils.exceptions.AstropyUserWarning:
|
|
|
|
|
;; Failed to load Vega spectrum from
|
|
|
|
|
;; /grp/redcat/trds/calspec/alpha_lyr_stis_010.fits;
|
|
|
|
|
#:tests? #f))
|
|
|
|
|
(propagated-inputs (list python-astropy
|
|
|
|
|
python-beautifulsoup4
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy
|
|
|
|
|
python-synphot))
|
2024-01-15 20:15:54 +00:00
|
|
|
|
(native-inputs (list python-pytest
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest-astropy-header
|
|
|
|
|
python-setuptools-scm))
|
2023-05-30 19:58:39 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/stsynphot_refactor")
|
|
|
|
|
(synopsis "Synthetic photometry using Astropy for HST and JWST")
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(description
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"This package provides a replacement for IRAF STSDAS SYNPHOT and ASTROLIB
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PYSYNPHOT, utilizing Astropy covering instrument specific portions of the old
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packages for HST.")
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(license license:bsd-3)))
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2019-07-14 17:51:39 +00:00
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(define-public libnova
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(package
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(name "libnova")
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(version "0.16")
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(source
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2024-01-20 20:56:13 +00:00
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://git.code.sf.net/p/libnova/libnova.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0icwylwkixihzni0kgl0j8dx3qhqvym6zv2hkw2dy6v9zvysrb1b"))))
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2019-07-14 17:51:39 +00:00
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(build-system gnu-build-system)
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(arguments
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2024-01-20 20:56:13 +00:00
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(list
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'patch-git-version
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(lambda _
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(substitute* "./git-version-gen"
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(("/bin/sh") (which "sh"))))))))
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2019-07-14 17:51:39 +00:00
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(native-inputs
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2021-12-13 16:18:24 +00:00
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(list autoconf automake libtool))
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2019-07-14 17:51:39 +00:00
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(synopsis "Celestial mechanics, astrometry and astrodynamics library")
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(description "Libnova is a general purpose, double precision, Celestial
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Mechanics, Astrometry and Astrodynamics library.")
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gnu: Use HTTPS package home pages wherever possible.
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise.
* gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]:
Likewise.
* gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise.
* gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise.
* gnu/packages/astronomy.scm (casacore, sextractor, libnova)
(xplanet)[home-page]: Likewise.
* gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao)
(freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms)
(libmodplug, libxmp, xmp, sox, drc, gsm, gnaural)
(streamripper)[home-page]: Likewise.
* gnu/packages/authentication.scm (pamtester)[home-page]: Likewise.
* gnu/packages/backup.scm (grsync)[home-page]: Likewise.
* gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma)
(r-plgem)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1)
(bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard)
(java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools)
(snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip)
(libsbml)[home-page]: Likewise.
* gnu/packages/build-tools.scm (tup)[home-page]: Likewise.
* gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools)
(cd-discid)[home-page]: Likewise.
* gnu/packages/check.scm (cunit, python-nose)
(python-pyhamcrest)[home-page]: Likewise.
* gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise.
* gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise.
* gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise.
* gnu/packages/compression.scm (p7zip)[home-page]: Likewise.
* gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial)
(r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook)
(r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags)
(r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm)
(r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet)
(r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde)
(r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels)
(r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom)
(r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat)
(r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]:
Likewise.
* gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13)
(rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20)
(rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20)
(rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20)
(rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise.
* gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise.
* gnu/packages/curl.scm (curlpp)[home-page]: Likewise.
* gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger)
(libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers)
(soci)[home-page]: Likewise.
* gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise.
* gnu/packages/debug.scm (remake)[home-page]: Likewise.
* gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise.
* gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise.
* gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise.
* gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise.
* gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise.
* gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise.
* gnu/packages/electronics.scm (xoscope)[home-page]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu)
(emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel)
(emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc)
(emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap)
(emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+)
(emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise.
* gnu/packages/embedded.scm (sdcc)[home-page]: Likewise.
* gnu/packages/engineering.scm (asco, libngspice, libspnav)
(openctm)[home-page]: Likewise.
* gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise.
* gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]:
Likewise.
* gnu/packages/finance.scm (gbonds)[home-page]: Likewise.
* gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]:
Likewise.
* gnu/packages/fltk.scm (ntk)[home-page]: Likewise.
* gnu/packages/fonts.scm (font-terminus, font-tex-gyre)
(font-comic-neue)[home-page]: Likewise.
* gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]:
Likewise.
* gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave)
(python-myhdl)[home-page]: Likewise.
* gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise.
* gnu/packages/ftp.scm (weex)[home-page]: Likewise.
* gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc)
(eureka, plib)[home-page]: Likewise.
* gnu/packages/games.scm (abe, alex4, armagetronad, barony)
(foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally)
(cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki)
(quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks)
(flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise.
* gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise.
* gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise.
* gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish)
(workrave)[home-page]: Likewise.
* gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise.
* gnu/packages/graph.scm (mscgen)[home-page]: Likewise.
* gnu/packages/graphics.scm (assimp, alembic, ctl, agg)
(opencsg)[home-page]: Likewise.
* gnu/packages/graphviz.scm (gts)[home-page]: Likewise.
* gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise.
* gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise.
* gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-http-client-restricted)
(ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]:
Likewise.
* gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg)
(ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats)
(ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints)
(ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon)
(ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards)
(ghc-template-haskell, ghc-boot-th, ghc-binary-orphans)
(ghc-postgresql-simple)[home-page]: Likewise.
* gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise.
* gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise.
* gnu/packages/image-processing.scm (mia)[home-page]: Likewise.
* gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr)
(qiv)[home-page]: Likewise.
* gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib)
(sng, mtpaint)[home-page]: Likewise.
* gnu/packages/java-xml.scm (java-simple-xml, java-jaxp)
(java-apache-xml-commons-resolver)[home-page]: Likewise.
* gnu/packages/java.scm (java-cisd-base, java-cisd-args4j)
(java-hamcrest-core, java-jsr305, java-eclipse-osgi)
(java-eclipse-equinox-common, java-eclipse-core-jobs)
(java-eclipse-equinox-registry, java-eclipse-equinox-app)
(java-eclipse-equinox-preferences, java-eclipse-core-contenttype)
(java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq)
(java-cdi-api)[home-page]: Likewise.
* gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise.
* gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]:
Likewise.
* gnu/packages/kde-internet.scm (kget)[home-page]: Likewise.
* gnu/packages/kde-systemtools.scm (dolphin-plugins)
(konsole)[home-page]: Likewise.
* gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise.
* gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise.
* gnu/packages/lego.scm (nqc)[home-page]: Likewise.
* gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise.
* gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise.
* gnu/packages/libffi.scm (libffi)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]:
Likewise.
* gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise.
* gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools)
(kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise.
* gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]:
Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser)
(sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore)
(sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell)
(sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise.
* gnu/packages/lisp.scm (lush2)[home-page]: Likewise.
* gnu/packages/logging.scm (log4cpp)[home-page]: Likewise.
* gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]:
Likewise.
* gnu/packages/mail.scm (muchsync, procmail, sendmail)
(opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise.
* gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise.
* gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh)
(metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3)
(frama-c)[home-page]: Likewise.
* gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]:
Likewise.
* gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise.
* gnu/packages/monitoring.scm (python-whisper, python-carbon)
(hostscope)[home-page]: Likewise.
* gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321)
(lame)[home-page]: Likewise.
* gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise.
* gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol)
(portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot)
(schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2)
(shiru-lv2)[home-page]: Likewise.
* gnu/packages/ncurses.scm (stfl)[home-page]: Likewise.
* gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird)
(tunctl, traceroute)[home-page]: Likewise.
* gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise.
* gnu/packages/ntp.scm (openntpd)[home-page]: Likewise.
* gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib)
(ocaml-graph, cubicle)[home-page]: Likewise.
* gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise.
* gnu/packages/package-management.scm (xstow, modules)[home-page]:
Likewise.
* gnu/packages/parallel.scm (xjobs)[home-page]: Likewise.
* gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]:
Likewise.
* gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]:
Likewise.
* gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]:
Likewise.
* gnu/packages/plan9.scm (drawterm)[home-page]: Likewise.
* gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]:
Likewise.
* gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise.
* gnu/packages/profiling.scm (otf2)[home-page]: Likewise.
* gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise.
* gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-cssutils)
(python-translationstring)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml)
(python-docutils, python-pexpect, python-importlib-resources)
(python-simplegeneric, python-urwid, python-xlrd, python-xlwt)
(python-pyasn1, python-pythondialog, python-tftpy, python-random2)
(python-arcp, python-pyopengl, python-sortedcollections)
(python-sortedcontainers, python-yapsy, python-pydispatcher)
(python-posix-ipc)[home-page]: Likewise.
* gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise.
* gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise.
* gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise.
* gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise.
* gnu/packages/regex.scm (tre)[home-page]: Likewise.
* gnu/packages/rsync.scm (librsync)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox)
(ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise.
* gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise.
* gnu/packages/screen.scm (dtach)[home-page]: Likewise.
* gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise.
* gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise.
* gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise.
* gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]:
Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise.
* gnu/packages/speech.scm (espeak)[home-page]: Likewise.
* gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise.
* gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice)
(r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable)
(python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm)
(r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]:
Likewise.
* gnu/packages/swig.scm (swig)[home-page]: Likewise.
* gnu/packages/task-management.scm (wtime)[home-page]: Likewise.
* gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise.
* gnu/packages/terminals.scm (libtermkey, mlterm, libvterm)
(libvterm)[home-page]: Likewise.
* gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs)
(texlive-csplain, biber, texmaker)[home-page]: Likewise.
* gnu/packages/text-editors.scm (joe)[home-page]: Likewise.
* gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise.
* gnu/packages/tv.scm (tvtime)[home-page]: Likewise.
* gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise.
* gnu/packages/upnp.scm (libupnp)[home-page]: Likewise.
* gnu/packages/version-control.scm (cvs)[home-page]: Likewise.
* gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib)
(liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl)
(dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise.
* gnu/packages/virtualization.scm (bochs)[home-page]: Likewise.
* gnu/packages/w3m.scm (w3m)[home-page]: Likewise.
* gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi)
(tidy-html, htmlcxx)[home-page]: Likewise.
* gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise.
* gnu/packages/wv.scm (wv)[home-page]: Likewise.
* gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise.
* gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c)
(opensp)[home-page]: Likewise.
* gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
2023-02-12 00:00:00 +00:00
|
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|
(home-page "https://libnova.sourceforge.net/")
|
2019-07-14 17:51:39 +00:00
|
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|
(license (list license:lgpl2.0+
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license:gpl2+)))) ; examples/transforms.c & lntest/*.c
|
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2022-07-23 21:00:44 +00:00
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(define-public libsep
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(package
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(name "libsep")
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(version "1.2.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/kbarbary/sep")
|
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0sag96am6r1ffh9860yq40js874362v3132ahlm6sq7padczkicf"))))
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(build-system cmake-build-system)
|
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(arguments
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(list
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#:make-flags #~(list (string-append "CC=" #$(cc-for-target))
|
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(string-append "PREFIX=" #$output))
|
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#:phases #~(modify-phases %standard-phases
|
|
|
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|
(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
|
|
|
|
|
(when tests?
|
|
|
|
|
(chdir "../source")
|
|
|
|
|
(invoke "make"
|
|
|
|
|
(string-append "CC=" #$(cc-for-target))
|
|
|
|
|
"test")))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-wrapper))
|
|
|
|
|
(home-page "https://github.com/kbarbary/sep")
|
|
|
|
|
(synopsis "Astronomical source extraction and photometry library")
|
|
|
|
|
(description
|
|
|
|
|
"SEP makes the core algorithms of
|
|
|
|
|
@url{https://www.astromatic.net/software/sextractor/, sextractor} available as a
|
|
|
|
|
library of stand-alone functions and classes. These operate directly on
|
|
|
|
|
in-memory arrays (no FITS files or configuration files). The code is derived
|
|
|
|
|
from the Source Extractor code base (written in C) and aims to produce results
|
|
|
|
|
compatible with Source Extractor whenever possible. SEP consists of a C library
|
|
|
|
|
with no dependencies outside the standard library, and a Python module that
|
|
|
|
|
wraps the C library in a Pythonic API. The Python wrapper operates on NumPy
|
|
|
|
|
arrays with NumPy as its only dependency.")
|
|
|
|
|
(license (list license:expat license:lgpl3+ license:bsd-3))))
|
|
|
|
|
|
2021-02-16 22:44:03 +00:00
|
|
|
|
(define-public libskry
|
|
|
|
|
(package
|
|
|
|
|
(name "libskry")
|
|
|
|
|
(version "0.3.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/GreatAttractor/libskry")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "14kwng0j8wqzlb0gqg3ayq36l15dpz7kvxc56fa47j55b376bwh6"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
`(#:make-flags
|
|
|
|
|
(list
|
|
|
|
|
(string-append
|
|
|
|
|
"LIBAV_INCLUDE_PATH=" (assoc-ref %build-inputs "ffmpeg") "/include"))
|
|
|
|
|
#:phases
|
|
|
|
|
(modify-phases %standard-phases
|
|
|
|
|
(delete 'configure) ;; no configure provided
|
|
|
|
|
(delete 'check) ;; no tests provided
|
|
|
|
|
(replace 'install
|
|
|
|
|
;; The Makefile lacks an ‘install’ target.
|
|
|
|
|
(lambda* (#:key outputs #:allow-other-keys)
|
|
|
|
|
(let* ((out (assoc-ref outputs "out"))
|
|
|
|
|
(lib (string-append out "/lib"))
|
|
|
|
|
(include (string-append out "/include")))
|
|
|
|
|
(copy-recursively "bin" lib)
|
|
|
|
|
(copy-recursively "include" include))
|
|
|
|
|
#t)))))
|
|
|
|
|
(inputs
|
gnu: ffmpeg: Promote version 5 to the default.
* gnu/packages/video.scm (ffmpeg): Alias to FFMPEG-5.
(mlt-6)[inpust]: Replace "ffmpeg" with FFMPEG-4.
(transcode, libquicktime, ffmpegthumbnailer, mplayer, obs,
simplescreenrecorder, handbrake, ffms2, libopenshot, wlstream)[inputs]: Change
from FFMPEG to FFMPEG-4.
* gnu/packages/arcan.scm (arcan)[inputs]: Likewise.
* gnu/packages/astronomy.scm (stackistry, libskry)[inputs]: Likewise.
* gnu/packages/audio.scm (aubio, bs1770gain)[inputs]: Likewise.
* gnu/packages/education.scm (openboard)[inputs]: Likewise.
* gnu/packages/emulators.scm (dolphin-emu, retroarch, pcsxr, ppsspp)[inputs]:
Likewise.
* gnu/packages/game-development.scm (warsow-qfusion)[inputs]: Likewise.
* gnu/packages/games.scm (oshu, hedgewars)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/graphics.scm (openscenegraph)[inputs]: Likewise.
* gnu/packages/image-processing.scm (opencv, paraview-5.9)[inputs]: Likewise.
* gnu/packages/julia-jll.scm (julia-ffmpeg-jll)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (kid3)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/linphone.scm (mediastreamer2)[inputs]: Likewise.
* gnu/packages/linux.scm (pipewire)[inputs]: Likewise.
(pipewire-0.3)[inputs]: Replace "ffmpeg" with FFMPEG.
* gnu/packages/mp3.scm (chromaprint)[inputs]: Change from FFMPEG to FFMPEG-4.
* gnu/packages/music.scm (musikcube)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/qt.scm (qtwebengine-5)[inputs]: Likewise.
2022-12-12 13:27:05 +00:00
|
|
|
|
(list ffmpeg-4))
|
2021-02-16 22:44:03 +00:00
|
|
|
|
(home-page "https://github.com/GreatAttractor/libskry")
|
|
|
|
|
(synopsis "Astronimical lucky imaging library")
|
|
|
|
|
(description
|
|
|
|
|
"@code{libskry} implements the lucky imaging principle of astronomical
|
|
|
|
|
imaging: creating a high-quality still image out of a series of many thousands)
|
|
|
|
|
low quality ones")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2021-01-22 22:46:11 +00:00
|
|
|
|
(define-public libpasastro
|
2023-11-17 12:15:52 +00:00
|
|
|
|
(package
|
|
|
|
|
(name "libpasastro")
|
2023-12-15 12:16:03 +00:00
|
|
|
|
(version "1.4.2")
|
2023-11-17 12:15:52 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/pchev/libpasastro")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2023-12-15 12:16:03 +00:00
|
|
|
|
(base32 "1na3gyb3nzb5gdgccs1653j2gnz6w3v1mqzhyhkx3yqw8bs3q5x0"))))
|
2023-11-17 12:15:52 +00:00
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
2024-01-20 15:38:36 +00:00
|
|
|
|
(list
|
|
|
|
|
#:tests? #f ; no tests provided
|
|
|
|
|
#:make-flags
|
|
|
|
|
#~(list
|
|
|
|
|
;; Keep OS detection for the case when Hurd would be suitable to try.
|
|
|
|
|
#$@(if (target-linux?) '("OS_TARGET=linux") '())
|
|
|
|
|
;; Enable buildtime CPU detection where supported,
|
|
|
|
|
;; and set a suitable CPU target variable.
|
|
|
|
|
#$@(match (or (%current-target-system)
|
|
|
|
|
(%current-system))
|
|
|
|
|
("i686-linux"
|
|
|
|
|
'("CPU_TARGET=i386"))
|
|
|
|
|
("x86_64-linux"
|
|
|
|
|
'("CPU_TARGET=x86_64"))
|
2024-01-27 13:28:33 +00:00
|
|
|
|
;; There is no a case for RISCV in upstream, attempt to treat it
|
|
|
|
|
;; as ARM.
|
|
|
|
|
((or "armhf-linux" "aarch64-linux" "riscv64")
|
2024-01-20 15:38:36 +00:00
|
|
|
|
'("CPU_TARGET=armv7l"))
|
|
|
|
|
(_ '()))
|
|
|
|
|
(string-append "PREFIX=" #$output))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(delete 'configure))))
|
2023-11-17 12:15:52 +00:00
|
|
|
|
(home-page "https://github.com/pchev/libpasastro")
|
|
|
|
|
(synopsis "Interface to astronomy library for use from Pascal program")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides shared libraries to interface Pascal program with
|
2021-01-22 22:46:11 +00:00
|
|
|
|
standard astronomy libraries:
|
|
|
|
|
|
|
|
|
|
@itemize
|
|
|
|
|
@item @code{libpasgetdss.so}: Interface with GetDSS to work with DSS images.
|
|
|
|
|
@item @code{libpasplan404.so}: Interface with Plan404 to compute planets position.
|
|
|
|
|
@item @code{libpaswcs.so}: Interface with libwcs to work with FITS WCS.
|
|
|
|
|
@item @code{libpasspice.so}: To work with NAIF/SPICE kernel.
|
2024-01-20 15:38:36 +00:00
|
|
|
|
@end itemize")
|
2023-11-17 12:15:52 +00:00
|
|
|
|
(license license:gpl2+)))
|
2021-01-22 22:46:11 +00:00
|
|
|
|
|
2023-04-08 20:54:18 +00:00
|
|
|
|
(define-public libxisf
|
|
|
|
|
(package
|
|
|
|
|
(name "libxisf")
|
2024-04-02 13:46:43 +00:00
|
|
|
|
(version "0.2.12")
|
2023-04-08 20:54:18 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://gitea.nouspiro.space/nou/libXISF")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2024-04-02 13:46:43 +00:00
|
|
|
|
(base32 "1bvf3x0xdipkg28c75j6jav3b2llbqvfa6lkwiacxxlzmj0226s2"))))
|
2023-04-08 20:54:18 +00:00
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list #:configure-flags #~(list "-DUSE_BUNDLED_LIBS=OFF")))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list pkg-config))
|
|
|
|
|
(inputs
|
|
|
|
|
(list lz4 pugixml zlib))
|
|
|
|
|
(home-page "https://nouspiro.space/?page_id=306")
|
|
|
|
|
(synopsis "Astronomical library to load and write XISF file format")
|
|
|
|
|
(description
|
2023-09-07 22:32:10 +00:00
|
|
|
|
"LibXISF is C++ library that can read and write @acronym{XISF,Extensible
|
|
|
|
|
Image Serialization Format} files produced by @url{https://pixinsight.com/,
|
|
|
|
|
PixInsight}. It implements
|
|
|
|
|
@url{https://pixinsight.com/doc/docs/XISF-1.0-spec/XISF-1.0-spec.html, XISF
|
|
|
|
|
1.0 specification}.")
|
2023-04-08 20:54:18 +00:00
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2021-01-27 00:11:51 +00:00
|
|
|
|
(define-public missfits
|
|
|
|
|
(package
|
|
|
|
|
(name "missfits")
|
|
|
|
|
(version "2.8.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
2023-06-25 21:28:16 +00:00
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/astromatic/missfits")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
2021-01-27 00:11:51 +00:00
|
|
|
|
(sha256
|
2023-06-25 21:28:16 +00:00
|
|
|
|
(base32 "12ndvrr3l5j7ph2i5f3qf0wqmv5ymsyjzxnnypqajsvliw72iprh"))))
|
2021-01-27 00:11:51 +00:00
|
|
|
|
(build-system gnu-build-system)
|
2023-06-25 21:28:16 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list
|
|
|
|
|
;; Address this link error:
|
|
|
|
|
;; ld: ... multiple definition of ... first defined here
|
|
|
|
|
"CPPFLAGS=-fcommon")))
|
2021-01-27 00:11:51 +00:00
|
|
|
|
(home-page "https://www.astromatic.net/software/missfits")
|
|
|
|
|
(synopsis "FITS files Maintenance program")
|
|
|
|
|
(description
|
|
|
|
|
"MissFITS is a program that performs basic maintenance and packaging tasks
|
|
|
|
|
on FITS files:
|
|
|
|
|
|
|
|
|
|
@itemize
|
|
|
|
|
@item add/edit FITS header keywords
|
2023-07-02 00:00:01 +00:00
|
|
|
|
@item split/join @acronym{MEF, Multi-Extension-FITS} files
|
2021-01-27 00:11:51 +00:00
|
|
|
|
@item unpack/pack FITS data-cubes
|
2023-07-02 00:00:01 +00:00
|
|
|
|
@item create/check/update FITS checksums, using
|
|
|
|
|
@uref{http://www.adass.org/adass/proceedings/adass94/seamanr.html,
|
|
|
|
|
R. Seaman's protocol}
|
2021-01-27 00:11:51 +00:00
|
|
|
|
@end itemize\n")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2020-04-05 13:16:59 +00:00
|
|
|
|
(define-public gpredict
|
2024-01-14 20:29:06 +00:00
|
|
|
|
;; The latest tag, 2.3, has no major difference with 2.2.1 and is dated for
|
|
|
|
|
;; 2018. Additionally, there is some activity on the master branch.
|
2020-04-05 13:16:59 +00:00
|
|
|
|
(package
|
|
|
|
|
(name "gpredict")
|
|
|
|
|
(version "2.2.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (string-append "https://github.com/csete/gpredict/releases"
|
|
|
|
|
"/download/v" version
|
|
|
|
|
"/gpredict-" version ".tar.bz2"))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0hwf97kng1zy8rxyglw04x89p0bg07zq30hgghm20yxiw2xc8ng7"))))
|
|
|
|
|
(build-system gnu-build-system)
|
2023-11-17 12:15:51 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:configure-flags #~(list "CFLAGS=-O2 -g -fcommon")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'fix-tests
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Remove reference to non-existent file.
|
|
|
|
|
(substitute* "po/POTFILES.in"
|
|
|
|
|
(("src/gtk-sat-tree\\.c") "")))))))
|
2020-04-05 13:16:59 +00:00
|
|
|
|
(native-inputs
|
2023-11-17 12:15:51 +00:00
|
|
|
|
(list gettext-minimal intltool pkg-config))
|
2020-04-05 13:16:59 +00:00
|
|
|
|
(inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list curl glib goocanvas gtk+))
|
2024-01-14 20:29:06 +00:00
|
|
|
|
(home-page "https://oz9aec.dk/gpredict/")
|
2020-04-05 13:16:59 +00:00
|
|
|
|
(synopsis "Satellite tracking and orbit prediction application")
|
|
|
|
|
(description
|
|
|
|
|
"Gpredict is a real-time satellite tracking and orbit prediction
|
|
|
|
|
application. It can track a large number of satellites and display their
|
|
|
|
|
position and other data in lists, tables, maps, and polar plots (radar view).
|
|
|
|
|
Gpredict can also predict the time of future passes for a satellite, and
|
2024-01-14 20:29:06 +00:00
|
|
|
|
provide you with detailed information about each pass.
|
|
|
|
|
|
|
|
|
|
Some core features of Gpredict include:
|
|
|
|
|
|
|
|
|
|
@itemize
|
|
|
|
|
@item Tracking of a large number of satellites only limited by the physical
|
|
|
|
|
memory and processing power of the computer
|
|
|
|
|
@item Display the tracking data in lists, maps, polar plots and any
|
|
|
|
|
combination of these
|
|
|
|
|
@item Have many modules open at the same either in a notebook or in their own
|
|
|
|
|
windows. The modules can also run in full-screen mode
|
|
|
|
|
@item You can use many ground stations
|
|
|
|
|
@item Predict upcoming passes
|
|
|
|
|
@item Gpredict can run in real-time, simulated real-time (fast forward and
|
|
|
|
|
backward), and manual time control
|
|
|
|
|
@item Detailed information both the real time and non-real time modes
|
|
|
|
|
@item Doppler tuning of radios via Hamlib rigctld
|
|
|
|
|
@item Antenna rotator control via Hamlib rotctld
|
|
|
|
|
@end itemize")
|
2020-04-05 13:16:59 +00:00
|
|
|
|
(license license:gpl2+)))
|
2021-01-31 02:49:34 +00:00
|
|
|
|
|
2024-04-20 21:50:40 +00:00
|
|
|
|
(define-public scamp
|
|
|
|
|
(package
|
|
|
|
|
(name "scamp")
|
|
|
|
|
(version "2.10.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/astromatic/scamp")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0qic52mzw9avf1a1fsr85mlh63b7hq6d4wj2d00zgdllmclj5l9q"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:configure-flags
|
|
|
|
|
#~(list "CPPFLAGS=-fcommon"
|
|
|
|
|
"--enable-openblas"
|
|
|
|
|
"--enable-plplot"
|
|
|
|
|
(string-append "--with-curl-incdir="
|
|
|
|
|
#$(this-package-input "curl") "/include")
|
|
|
|
|
(string-append "--with-curl-libdir="
|
|
|
|
|
#$(this-package-input "curl") "/lib")
|
|
|
|
|
(string-append "--with-fftw-incdir="
|
|
|
|
|
#$(this-package-input "fftwf") "/include")
|
|
|
|
|
(string-append "--with-fftw-libdir="
|
|
|
|
|
#$(this-package-input "fftwf") "/lib")
|
|
|
|
|
(string-append "--with-openblas-incdir="
|
|
|
|
|
#$(this-package-input "openblas") "/include")
|
|
|
|
|
(string-append "--with-openblas-libdir="
|
|
|
|
|
#$(this-package-input "openblas") "/lib")
|
|
|
|
|
(string-append "--with-plplot-incdir="
|
|
|
|
|
#$(this-package-input "plplot") "/include")
|
|
|
|
|
(string-append "--with-plplot-libdir="
|
|
|
|
|
#$(this-package-input "plplot") "/lib"))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list autoconf
|
|
|
|
|
automake
|
|
|
|
|
libtool
|
|
|
|
|
pkg-config
|
|
|
|
|
python-astropy
|
|
|
|
|
python-numpy
|
|
|
|
|
python-wrapper))
|
|
|
|
|
(inputs
|
|
|
|
|
(list curl fftwf openblas plplot))
|
|
|
|
|
(home-page "https://www.astromatic.net/software/scamp/")
|
|
|
|
|
(synopsis "Compute astrometric solutions")
|
|
|
|
|
(description
|
|
|
|
|
"@acronym{Software for Calibrating AstroMetry and Photometry,SCAMP} is a
|
|
|
|
|
software that computes astrometric projection parameters from source catalogues
|
|
|
|
|
derived from @url{http://fits.gsfc.nasa.gov/,FITS} images. The computed solution
|
|
|
|
|
is expressed according to the
|
|
|
|
|
@url{http://www.atnf.csiro.au/people/mcalabre/WCS/index.html,WCS} standard. The
|
|
|
|
|
main features of SCAMP are:
|
|
|
|
|
|
|
|
|
|
@itemize
|
|
|
|
|
@item compatibility with @code{SExtractor} FITS or Multi-Extension FITS
|
|
|
|
|
catalogue format in input
|
|
|
|
|
@item generation of WCS-compliant and @code{SWarp}-compatible FITS image headers
|
|
|
|
|
in output
|
|
|
|
|
@item automatic grouping of catalogues on the sky
|
|
|
|
|
@item selectable on-line astrometric reference catalogue
|
|
|
|
|
@item automatic determination of scale, position angle, flipping and coordinate
|
|
|
|
|
shift using fast pattern-matching
|
|
|
|
|
@item various astrometric calibration modes for single detectors and detector
|
|
|
|
|
arrays
|
|
|
|
|
@item combined astrometric solutions for multi-channel/instrument surveys
|
|
|
|
|
@item highly configurable astrometric distortion polynomials
|
|
|
|
|
@item correction for differential chromatic refraction
|
|
|
|
|
@item proper motion measurements
|
|
|
|
|
@item multi-threaded code that takes advantage of multiple processors
|
|
|
|
|
@item @url{http://www.ivoa.net/documents/VOTable,VOTable}-compliant XML output
|
|
|
|
|
of meta-data
|
|
|
|
|
@item @url{http://en.wikipedia.org/wiki/XSLT,XSLT} filter sheet provided for
|
|
|
|
|
convenient access to metadata from a regular web browser
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2021-05-03 17:34:34 +00:00
|
|
|
|
(define-public sgp4
|
2022-11-29 21:15:58 +00:00
|
|
|
|
;; Version tag v1.0 is dated to <2021-01-11>, use the lates commit instead.
|
|
|
|
|
(let ((commit "6a448b4850e5fbf8c1ca03bb5f6013a9fdc1fd91")
|
|
|
|
|
(revision "2"))
|
2021-05-03 17:34:34 +00:00
|
|
|
|
(package
|
|
|
|
|
(name "sgp4")
|
2022-11-29 21:15:58 +00:00
|
|
|
|
(version (git-version "1.0" revision commit))
|
2021-05-03 17:34:34 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/dnwrnr/sgp4")
|
|
|
|
|
(commit commit)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2022-11-29 21:15:58 +00:00
|
|
|
|
(base32 "15q8sain87cbppmzq66y6gp6bvm3kdd1bcchrl59rcvjp0w51wl1"))))
|
2021-05-03 17:34:34 +00:00
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
2022-11-29 21:15:58 +00:00
|
|
|
|
(list
|
|
|
|
|
;; FIXME: Tests evaluated via runtest binary, but it's failing even
|
|
|
|
|
;; when SGP4-VER.TLE file was copied next to it during install phase.
|
|
|
|
|
;;
|
|
|
|
|
;; There are 2 more binaries are created after build phase -
|
|
|
|
|
;; passpredict and sattrack which are failing to execute after
|
|
|
|
|
;; install, strace output:
|
|
|
|
|
;;
|
|
|
|
|
;; strace: exec: Exec format error
|
|
|
|
|
;;
|
|
|
|
|
#:tests? #f))
|
2021-05-03 17:34:34 +00:00
|
|
|
|
(home-page "https://github.com/dnwrnr/sgp4")
|
|
|
|
|
(synopsis "Simplified perturbations models library")
|
|
|
|
|
(description
|
|
|
|
|
"This is a library implementing the simplified perturbations model.
|
|
|
|
|
It can be used to calculate the trajectory of satellites.")
|
|
|
|
|
(license license:asl2.0))))
|
|
|
|
|
|
2021-11-12 21:21:12 +00:00
|
|
|
|
(define-public imppg
|
|
|
|
|
(package
|
|
|
|
|
(name "imppg")
|
2022-11-27 14:57:03 +00:00
|
|
|
|
(version "0.6.5")
|
2021-11-12 21:21:12 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/GreatAttractor/imppg")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2022-11-27 14:57:03 +00:00
|
|
|
|
(base32 "0a6wb1a9adwd01dmy0r03xxp8iz9y7mvh30088ajilhj4lf90vxa"))))
|
2021-11-12 21:21:12 +00:00
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
2023-10-27 22:14:45 +00:00
|
|
|
|
(list ;; No test provided
|
|
|
|
|
#:tests? #f))
|
2021-11-12 21:21:12 +00:00
|
|
|
|
(native-inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list boost pkg-config))
|
2021-11-12 21:21:12 +00:00
|
|
|
|
(inputs
|
gnu: wxWidgets: Update to 3.2.1.
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.2.1.
[source](modules, snippet): New fields.
[inputs]: Remove SDL. Add CATCH-FRAMEWORK, EXPAT, GSTREAMER,
GST-PLUGINS-BASE, LIBNOTIFY, LIBPNG, LIBSECRET, PCRE, SDL2,
WEBKITGTK-WITH-LIBSOUP2, and ZLIB
[arguments]: Add "--enable-mediactrl" and "--enable-gui" to #:configure-flags.
Remove aarch64 workaround. Install catch header in refer-to-inputs phase.
Add phase to adjust WebKitGTK version.
(wxwidgets-3.1, wxwidgets-gtk2-3.1): Remove variables.
(wxwidgets-3.0, (wxwidgets-gtk2-3.0): New variables.
(wxsvg)[inputs]: Change from WXWIDGETS-3.1 to WXWIDGETS.
* gnu/packages/audio.scm (audacity)[inputs]: Likewise.
* gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise.
* gnu/packages/astronomy.scm (imppg)[inputs]: Change from WXWIDGETS to
WXWIDGETS-3.0.
* gnu/packages/ftp.scm (filezilla)[inputs]: Likewise.
* gnu/packages/games.scm (megaglest)[inputs]: Likewise.
* gnu/packages/geo.scm (opencpn)[inputs]: Likewise.
* gnu/packages/music.scm (sooperlooper)[inputs]: Likewise.
* gnu/packages/engineering.scm (kicad)[arguments]: Enable EGL support.
2022-11-26 16:43:26 +00:00
|
|
|
|
(list cfitsio freeimage glew wxwidgets-3.0))
|
2021-11-12 21:21:12 +00:00
|
|
|
|
(home-page "https://github.com/GreatAttractor/imppg")
|
|
|
|
|
(synopsis "Astronomical Image Post-Proccessor (ImPPG)")
|
|
|
|
|
(description
|
|
|
|
|
"ImPPG performs Lucy-Richardson deconvolution, unsharp masking,
|
|
|
|
|
brightness normalization and tone curve adjustment. It can also apply
|
|
|
|
|
previously specified processing settings to multiple images. All operations
|
|
|
|
|
are performed using 32-bit floating-point arithmetic.
|
|
|
|
|
|
|
|
|
|
Supported input formats: FITS, BMP, JPEG, PNG, TIFF (most of bit depths and
|
|
|
|
|
compression methods), TGA and more. Images are processed in grayscale and can
|
|
|
|
|
be saved as: BMP 8-bit; PNG 8-bit; TIFF 8-bit, 16-bit, 32-bit
|
|
|
|
|
floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit,
|
|
|
|
|
32-bit floating-point.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2023-10-08 23:40:22 +00:00
|
|
|
|
(define-public indi-2.0
|
2021-01-31 02:49:34 +00:00
|
|
|
|
(package
|
|
|
|
|
(name "indi")
|
2024-06-11 21:05:55 +00:00
|
|
|
|
(version "2.0.8")
|
2021-01-31 02:49:34 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/indilib/indi")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
2024-06-11 21:05:55 +00:00
|
|
|
|
(base32 "1rsy6ihwl3fnv502pmycx0xry9qn1qfz13kwdifcf2075wqd1lx9"))))
|
2021-01-31 02:49:34 +00:00
|
|
|
|
(build-system cmake-build-system)
|
|
|
|
|
(arguments
|
2022-12-11 22:25:45 +00:00
|
|
|
|
;; TODO: fix failing tests on aarch64-system.
|
|
|
|
|
`(#:tests? ,(not (or (%current-target-system) (target-aarch64?)))
|
|
|
|
|
#:configure-flags
|
2021-01-31 02:49:34 +00:00
|
|
|
|
(let ((out (assoc-ref %outputs "out")))
|
|
|
|
|
(list
|
|
|
|
|
"-DINDI_BUILD_UNITTESTS=ON"
|
|
|
|
|
"-DCMAKE_BUILD_TYPE=Release"
|
|
|
|
|
(string-append "-DCMAKE_INSTALL_PREFIX=" out)
|
|
|
|
|
(string-append "-DUDEVRULES_INSTALL_DIR=" out "/lib/udev/rules.d")))
|
|
|
|
|
#:phases
|
|
|
|
|
(modify-phases %standard-phases
|
2021-05-04 11:35:54 +00:00
|
|
|
|
(replace 'check
|
|
|
|
|
(lambda* (#:key tests? #:allow-other-keys)
|
|
|
|
|
(when tests?
|
|
|
|
|
(with-directory-excursion "test"
|
2021-05-04 11:49:45 +00:00
|
|
|
|
(invoke "ctest")))))
|
2021-01-31 02:49:34 +00:00
|
|
|
|
(add-before 'install 'set-install-directories
|
|
|
|
|
(lambda* (#:key outputs #:allow-other-keys)
|
|
|
|
|
(let ((out (assoc-ref outputs "out")))
|
2021-05-04 11:49:45 +00:00
|
|
|
|
(mkdir-p (string-append out "/lib/udev/rules.d"))))))))
|
2021-01-31 02:49:34 +00:00
|
|
|
|
(native-inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list googletest))
|
2021-01-31 02:49:34 +00:00
|
|
|
|
(inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list cfitsio
|
|
|
|
|
curl
|
|
|
|
|
fftw
|
|
|
|
|
gsl
|
2022-12-11 22:25:45 +00:00
|
|
|
|
libev
|
2021-12-13 16:18:24 +00:00
|
|
|
|
libjpeg-turbo
|
|
|
|
|
libnova
|
|
|
|
|
libtiff
|
|
|
|
|
libusb
|
|
|
|
|
zlib))
|
2021-01-31 02:49:34 +00:00
|
|
|
|
(home-page "https://www.indilib.org")
|
|
|
|
|
(synopsis "Library for astronimical intrumentation control")
|
|
|
|
|
(description
|
|
|
|
|
"INDI (Instrument-Neutral Device Interface) is a distributed XML-based
|
|
|
|
|
control protocol designed to operate astronomical instrumentation. INDI is
|
|
|
|
|
small, flexible, easy to parse, scalable, and stateless. It supports common
|
|
|
|
|
DCS functions such as remote control, data acquisition, monitoring, and a lot
|
|
|
|
|
more.")
|
|
|
|
|
(license (list license:bsd-3
|
|
|
|
|
license:gpl2+
|
|
|
|
|
license:lgpl2.0+
|
|
|
|
|
license:lgpl2.1+))))
|
2021-02-01 14:56:41 +00:00
|
|
|
|
|
2023-10-08 23:40:22 +00:00
|
|
|
|
(define-public indi-1.9
|
|
|
|
|
(package
|
|
|
|
|
(inherit indi-2.0)
|
|
|
|
|
(version "1.9.9")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/indilib/indi")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name "indi" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1vfcas59nlw8v7n6qhxhcm4isf5wk0crip5rmsallq3bsv3zznfr"))))))
|
|
|
|
|
|
|
|
|
|
(define-public indi
|
|
|
|
|
;; Default version of INDI..
|
|
|
|
|
indi-1.9)
|
|
|
|
|
|
2021-02-01 14:56:41 +00:00
|
|
|
|
(define-public python-jplephem
|
|
|
|
|
(package
|
|
|
|
|
(name "python-jplephem")
|
2024-05-20 22:12:41 +00:00
|
|
|
|
(version "2.22")
|
2021-02-01 14:56:41 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "jplephem" version))
|
|
|
|
|
(sha256
|
2024-05-20 22:12:41 +00:00
|
|
|
|
(base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
|
2023-10-08 23:40:08 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2021-02-01 14:56:41 +00:00
|
|
|
|
(arguments
|
2023-10-08 23:40:08 +00:00
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(replace 'check
|
|
|
|
|
(lambda* (#:key tests? #:allow-other-keys)
|
|
|
|
|
(when tests?
|
|
|
|
|
(invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
|
2021-02-01 14:56:41 +00:00
|
|
|
|
(inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list python-numpy))
|
2021-02-01 14:56:41 +00:00
|
|
|
|
(home-page "https://github.com/brandon-rhodes/python-jplephem")
|
|
|
|
|
(synopsis "Python version of NASA DE4xx ephemerides")
|
|
|
|
|
(description
|
2023-10-08 23:40:08 +00:00
|
|
|
|
"@code{skyfield} computes positions for the stars, planets, and
|
|
|
|
|
satellites in orbit around the Earth. Its results should agree with the
|
|
|
|
|
positions generated by the United States Naval Observatory and their
|
|
|
|
|
Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
|
|
|
|
|
milliarcsecond).")
|
2021-02-01 14:56:41 +00:00
|
|
|
|
(license license:expat)))
|
2021-02-07 23:38:58 +00:00
|
|
|
|
|
2023-05-30 19:58:48 +00:00
|
|
|
|
(define-public python-jwst
|
|
|
|
|
(package
|
|
|
|
|
(name "python-jwst")
|
2024-07-01 21:58:42 +00:00
|
|
|
|
(version "1.15.1")
|
2023-05-30 19:58:48 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "jwst" version))
|
|
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|
|
(sha256
|
|
|
|
|
(base32
|
2024-07-01 21:58:42 +00:00
|
|
|
|
"1nl5fixakqvjhg9q5biivwaqpi6lzx9w4fq0n6imwccag2gv1va3"))
|
2024-06-13 13:14:31 +00:00
|
|
|
|
(modules '((guix build utils)))
|
|
|
|
|
(snippet
|
|
|
|
|
'(begin
|
|
|
|
|
;; Replace reference to external configobj.
|
|
|
|
|
(substitute* (find-files "." "\\.py$")
|
|
|
|
|
(("from astropy.extern import configobj") "import configobj")
|
|
|
|
|
(("from astropy.extern.configobj import validate") "import validate")
|
|
|
|
|
(("from astropy.extern.configobj.configobj import ") "from configobj import ")
|
|
|
|
|
(("from astropy.extern.configobj.validate import ") "from validate import "))))))
|
2023-05-30 19:58:48 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; XXX: Tests require access to https://jwst-crds-pub.stsci.edu server for
|
|
|
|
|
;; getting data sets.
|
|
|
|
|
#:tests? #f
|
|
|
|
|
#:phases #~(modify-phases %standard-phases
|
|
|
|
|
;; NOTE: (Sharlatan-20230529T113448+0100): opencv-python's
|
|
|
|
|
;; version can't be detected, it could the way it's packed in
|
|
|
|
|
;; Guix. Review failing sanity check with more efforts,
|
|
|
|
|
;; disable for now to make package buildable.
|
|
|
|
|
(delete 'sanity-check))))
|
|
|
|
|
;; opencv provides OpenCV-Python which is Listed as install requirement.
|
|
|
|
|
(propagated-inputs (list opencv
|
|
|
|
|
python-asdf
|
|
|
|
|
python-asdf-astropy
|
|
|
|
|
python-astropy
|
|
|
|
|
python-bayesicfitting
|
|
|
|
|
python-crds
|
|
|
|
|
python-drizzle
|
|
|
|
|
python-gwcs
|
2024-04-02 14:31:21 +00:00
|
|
|
|
python-importlib-metadata
|
2023-09-07 22:32:19 +00:00
|
|
|
|
python-jplephem
|
2023-05-30 19:58:48 +00:00
|
|
|
|
python-jsonschema
|
|
|
|
|
python-numpy
|
2024-04-02 14:31:21 +00:00
|
|
|
|
python-packaging
|
2023-05-30 19:58:48 +00:00
|
|
|
|
python-photutils
|
|
|
|
|
python-poppy
|
|
|
|
|
python-psutil
|
|
|
|
|
python-pyparsing
|
2024-04-02 14:31:21 +00:00
|
|
|
|
python-pysiaf
|
2023-05-30 19:58:48 +00:00
|
|
|
|
python-requests
|
|
|
|
|
python-scikit-image
|
|
|
|
|
python-scipy
|
|
|
|
|
python-spherical-geometry
|
|
|
|
|
python-stcal
|
|
|
|
|
python-stdatamodels
|
|
|
|
|
python-stpipe
|
|
|
|
|
python-stsci-image
|
|
|
|
|
python-stsci-imagestats
|
2024-04-02 14:31:21 +00:00
|
|
|
|
python-synphot
|
2023-05-30 19:58:48 +00:00
|
|
|
|
python-tweakwcs
|
|
|
|
|
python-wiimatch))
|
2023-09-07 22:32:19 +00:00
|
|
|
|
(native-inputs (list python-colorama
|
2023-05-30 19:58:48 +00:00
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-cov
|
|
|
|
|
python-pytest-doctestplus
|
|
|
|
|
python-pytest-openfiles
|
|
|
|
|
python-requests-mock
|
2024-04-02 14:31:21 +00:00
|
|
|
|
;; python-ruff ; not packed yet in Guix
|
2023-05-30 19:58:48 +00:00
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(home-page "https://jwst-pipeline.readthedocs.io/en/latest/")
|
|
|
|
|
(synopsis
|
|
|
|
|
"Python library for science observations from the James Webb Space Telescope")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides an access to the JWST Science Calibration Pipeline
|
|
|
|
|
processes data from all JWST instruments and observing modes by applying various
|
|
|
|
|
science corrections sequentially, producing both fully-calibrated individual
|
|
|
|
|
exposures and high-level data products (mosaics, extracted spectra, etc.).")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-06-17 21:12:27 +00:00
|
|
|
|
(define-public python-jwst-reffiles
|
|
|
|
|
(package
|
|
|
|
|
(name "python-jwst-reffiles")
|
|
|
|
|
(version "1.0.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "jwst_reffiles" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1dlw955cw49qczdmimglmlcbal8vd3wbv5j48ckllvjgd59pwr3s"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; FIXME: Invistigate why it failes on python-jwst side where the
|
|
|
|
|
;; python-tweakwcs is built just fine:
|
|
|
|
|
;;
|
|
|
|
|
;; <...>/tweakwcs/matchutils.py:18: in <module>
|
|
|
|
|
;; from stsci.stimage import xyxymatch
|
|
|
|
|
;; E ModuleNotFoundError: No module named 'stsci.stimage'
|
|
|
|
|
#:tests? #f
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(delete 'sanity-check))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-jwst
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest
|
|
|
|
|
python-stsci-stimage))
|
|
|
|
|
(home-page "https://github.com/spacetelescope/jwst_reffiles")
|
|
|
|
|
(synopsis "Tool for JWST's CRDS-formatted reference files creation")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a tool to create @acronym{Calibration References
|
|
|
|
|
Data System,CRDS}-formatted reference files for @acronym{James Webb Space
|
|
|
|
|
Telescope,JWST} from a set of input dark current files and a set of flat field
|
|
|
|
|
files.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2021-02-19 09:07:28 +00:00
|
|
|
|
(define-public python-pyerfa
|
|
|
|
|
(package
|
|
|
|
|
(name "python-pyerfa")
|
2024-06-18 08:48:55 +00:00
|
|
|
|
(version "2.0.1.4")
|
2021-02-19 09:07:28 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "pyerfa" version))
|
|
|
|
|
(sha256
|
2024-06-18 08:48:55 +00:00
|
|
|
|
(base32 "1lwx4hril705r2iz4pirgn0wrpv1wk20mr669g03bsij69qsdf5c"))
|
2021-02-19 09:07:28 +00:00
|
|
|
|
(modules '((guix build utils)))
|
|
|
|
|
(snippet
|
2023-07-26 23:15:42 +00:00
|
|
|
|
#~(begin
|
|
|
|
|
;; Remove bundled submodule library.
|
|
|
|
|
(delete-file-recursively "liberfa")))))
|
2023-07-26 23:15:41 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2021-02-19 09:07:28 +00:00
|
|
|
|
(arguments
|
2023-07-26 23:15:42 +00:00
|
|
|
|
(list
|
|
|
|
|
;; Disable only one failing test:
|
|
|
|
|
;; AttributeError: __warningregistry__
|
2023-10-27 22:14:52 +00:00
|
|
|
|
;; See https://github.com/liberfa/pyerfa/issues/126
|
2023-07-26 23:15:42 +00:00
|
|
|
|
#:test-flags #~(list "-k" "not test_errwarn_reporting")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'build 'use-system-liberfa
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "PYERFA_USE_SYSTEM_LIBERFA" "1")))
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
2021-02-19 09:07:28 +00:00
|
|
|
|
(native-inputs
|
2021-12-24 05:47:32 +00:00
|
|
|
|
(list python-pytest-doctestplus python-pytest python-setuptools-scm))
|
2021-02-19 09:07:28 +00:00
|
|
|
|
(inputs
|
2021-12-24 05:47:32 +00:00
|
|
|
|
(list erfa))
|
2021-10-30 02:51:32 +00:00
|
|
|
|
(propagated-inputs
|
2021-12-13 16:18:24 +00:00
|
|
|
|
(list python-numpy))
|
2021-02-19 09:07:28 +00:00
|
|
|
|
(home-page "https://github.com/liberfa/pyerfa")
|
|
|
|
|
(synopsis "Python bindings for ERFA")
|
|
|
|
|
(description
|
|
|
|
|
"PyERFA is the Python wrapper for the ERFA library (Essential
|
|
|
|
|
Routines for Fundamental Astronomy), a C library containing key algorithms for
|
|
|
|
|
astronomy, which is based on the SOFA library published by the International
|
|
|
|
|
Astronomical Union (IAU). All C routines are wrapped as Numpy universal
|
|
|
|
|
functions, so that they can be called with scalar or array inputs.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-07-29 20:17:50 +00:00
|
|
|
|
(define-public python-pynbody
|
|
|
|
|
(package
|
|
|
|
|
(name "python-pynbody")
|
2024-03-12 21:46:49 +00:00
|
|
|
|
(version "1.6.0")
|
2022-07-29 20:17:50 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
2023-10-27 22:14:48 +00:00
|
|
|
|
(method git-fetch) ;PyPi doesn't have not prebuit version.
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/pynbody/pynbody")
|
|
|
|
|
(commit (string-append "v" version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
2022-07-29 20:17:50 +00:00
|
|
|
|
(sha256
|
2024-03-12 21:46:49 +00:00
|
|
|
|
(base32 "00isg6nsqzgjqpkczwvrcmj3ndzav3bfzla0a72b44cgdj20wyv8"))
|
2023-10-27 22:14:48 +00:00
|
|
|
|
(modules '((guix build utils)))
|
|
|
|
|
(snippet
|
|
|
|
|
;; Symlink goes to not existing directory.
|
|
|
|
|
#~(for-each delete-file '("docs/testdata"
|
|
|
|
|
"docs/tutorials/example_code/testdata")))))
|
2023-05-24 21:51:47 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-07-29 20:17:50 +00:00
|
|
|
|
(arguments
|
2023-05-24 21:51:47 +00:00
|
|
|
|
(list #:test-flags #~(list
|
|
|
|
|
;; Disable tests which need to download additional
|
|
|
|
|
;; 1.0GiB+ of test data archive from
|
|
|
|
|
;; http://star.ucl.ac.uk/~app/testdata.tar.gz
|
|
|
|
|
;; https://github.com/pynbody/pynbody/blob/ \
|
|
|
|
|
;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \
|
|
|
|
|
;; .github/workflows/build-test.yaml#L41
|
2024-03-12 21:46:49 +00:00
|
|
|
|
;; See <https://github.com/pynbody/pynbody/issues/778>
|
2023-12-16 04:26:41 +00:00
|
|
|
|
"--ignore=tests/copy_on_access_test.py"
|
2023-05-24 21:51:47 +00:00
|
|
|
|
"--ignore=tests/gravity_test.py"
|
|
|
|
|
"--ignore=tests/adaptahop_test.py"
|
|
|
|
|
"--ignore=tests/ahf_halos_test.py"
|
|
|
|
|
"--ignore=tests/array_test.py"
|
|
|
|
|
"--ignore=tests/bridge_test.py"
|
|
|
|
|
"--ignore=tests/family_test.py"
|
|
|
|
|
"--ignore=tests/partial_tipsy_test.py"
|
|
|
|
|
"--ignore=tests/snapshot_test.py"
|
|
|
|
|
"--ignore=tests/test_profile.py"
|
|
|
|
|
"--ignore=tests/gadget_test.py"
|
|
|
|
|
"--ignore=tests/gadgethdf_test.py"
|
|
|
|
|
"--ignore=tests/grafic_test.py"
|
|
|
|
|
"--ignore=tests/halotools_test.py"
|
|
|
|
|
"--ignore=tests/nchilada_test.py"
|
|
|
|
|
"--ignore=tests/ramses_new_ptcl_format_test.py"
|
|
|
|
|
"--ignore=tests/ramses_test.py"
|
|
|
|
|
"--ignore=tests/rockstar_test.py"
|
|
|
|
|
"--ignore=tests/sph_image_test.py"
|
|
|
|
|
"--ignore=tests/sph_smooth_test.py"
|
|
|
|
|
"--ignore=tests/subfind_test.py"
|
|
|
|
|
"--ignore=tests/subfindhdf_gadget4_test.py"
|
2024-03-12 21:46:49 +00:00
|
|
|
|
"--ignore=tests/tipsy_test.py"
|
|
|
|
|
"-k"
|
|
|
|
|
(string-append
|
|
|
|
|
"not test_div_curl_smoothing"
|
|
|
|
|
" and not test_float_kd"
|
|
|
|
|
" and not test_kd_delete"
|
|
|
|
|
" and not test_kd_issue_88"
|
|
|
|
|
" and not test_kdtree_from_existing_kdtree"
|
|
|
|
|
" and not test_kdtree_shared_mem"
|
|
|
|
|
" and not test_neighbour_list"
|
|
|
|
|
" and not test_particles_in_sphere"
|
|
|
|
|
" and not test_periodic_smoothing"
|
|
|
|
|
" and not test_smooth"
|
|
|
|
|
" and not test_smooth_WendlandC2"))
|
2023-11-17 12:16:01 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'build 'set-compiler
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "CC" #$(cc-for-target)))))))
|
2022-07-29 20:17:50 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-cython
|
|
|
|
|
python-pandas
|
|
|
|
|
python-pytest))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-h5py
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-posix-ipc
|
|
|
|
|
python-scipy))
|
|
|
|
|
(home-page "https://pynbody.github.io/pynbody/index.html")
|
|
|
|
|
(synopsis "Light-weight astronomical N-body/SPH analysis for python")
|
|
|
|
|
(description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic
|
|
|
|
|
astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
|
|
|
|
|
N-Chilada and RAMSES AMR outputs.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2023-10-11 01:39:33 +00:00
|
|
|
|
(define-public python-pyregion
|
|
|
|
|
(package
|
|
|
|
|
(name "python-pyregion")
|
|
|
|
|
(version "2.2.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "pyregion" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0l7qb7r8fnv46mdih4m5b8jaxixgpw6m7v37dpikjkblgh0vigaw"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Cython extensions have to be built before running the tests.
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy python-numpy python-pyparsing))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-cython
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-astropy-header
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(home-page "https://github.com/astropy/pyregion")
|
|
|
|
|
(synopsis "Python parser for ds9 region files")
|
|
|
|
|
(description
|
|
|
|
|
"@code{pyregion} is a python module to parse ds9 region files. It also
|
|
|
|
|
supports ciao region files.
|
|
|
|
|
Features:
|
|
|
|
|
@itemize
|
|
|
|
|
@item ds9 and ciao region files.
|
|
|
|
|
@item (physical, WCS) coordinate conversion to the image coordinate.
|
|
|
|
|
@item convert regions to matplotlib patches.
|
|
|
|
|
@item convert regions to spatial filter (i.e., generate mask images)
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2024-04-02 20:05:17 +00:00
|
|
|
|
(define-public python-pysiaf
|
|
|
|
|
(package
|
|
|
|
|
(name "python-pysiaf")
|
|
|
|
|
(version "0.22.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "pysiaf" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "08wb98k9k4f04455da5ns9rif8pl9r3ih537w1yj393hkjjiyzfz"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto"
|
|
|
|
|
;; Disable 2 failing tests, see
|
|
|
|
|
;; <https://github.com/spacetelescope/pysiaf/issues/338>
|
|
|
|
|
"-k" (string-append "not test_write_jwst_siaf_xlsx"
|
|
|
|
|
" and not test_write_jwst_siaf_xml" ))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-lxml
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-numpydoc
|
|
|
|
|
python-openpyxl
|
|
|
|
|
python-requests
|
|
|
|
|
python-scipy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest python-pytest-xdist))
|
|
|
|
|
(home-page "https://pysiaf.readthedocs.io/")
|
|
|
|
|
(synopsis "Handling SIAF for space telescopes")
|
|
|
|
|
(description
|
|
|
|
|
"@code{pysiaf} is a python package to access, interpret, maintain, and
|
|
|
|
|
generate @acronym{Handling of Science Instrument Aperture Files, SIAF}, in
|
|
|
|
|
particular for JWST. Tools for applying the frame transformations, plotting,
|
|
|
|
|
comparison, and validation are provided.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:31 +00:00
|
|
|
|
(define-public python-pysynphot
|
2024-01-27 16:30:17 +00:00
|
|
|
|
;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that
|
|
|
|
|
;; time and it failed to build with python-astropy 6.0.0, use the latest
|
|
|
|
|
;; upstream commit for now.
|
|
|
|
|
(let ((commit "54e9e2a624910c4d177ca70f8e9fb8110c8fae5b")
|
|
|
|
|
(revision "0"))
|
2024-01-27 16:37:27 +00:00
|
|
|
|
(package
|
|
|
|
|
(name "python-pysynphot")
|
2024-01-27 16:30:17 +00:00
|
|
|
|
(version (git-version "2.0.0" revision commit))
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/spacetelescope/pysynphot")
|
|
|
|
|
(commit commit)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "09sivpfqilk86zp8k5wmrs4g48m4kypn34jcy95y5h4ygbn5zbzy"))))
|
2024-01-27 16:37:27 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'build 'set-version
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "2.0.0")))
|
|
|
|
|
(add-before 'check 'set-env-data-path
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "PYSYN_CDBS" (string-append #$output "/crds")))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest
|
|
|
|
|
python-pytest-remotedata
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-beautifulsoup4
|
|
|
|
|
python-numpy
|
|
|
|
|
python-pytest-astropy-header
|
|
|
|
|
python-six))
|
|
|
|
|
(home-page "https://github.com/spacetelescope/pysynphot")
|
|
|
|
|
(synopsis "Python Synthetic Photometry Utilities")
|
|
|
|
|
(description
|
|
|
|
|
"Astrolib PySynphot (hereafter referred to only as pysynphot) is an
|
2023-05-30 19:58:31 +00:00
|
|
|
|
object-oriented replacement for STSDAS SYNPHOT synthetic photometry package in
|
|
|
|
|
IRAF. @code{pysynphot} simulates photometric data and spectra as they are
|
|
|
|
|
observed with the Hubble Space Telescope (HST). Passbands for standard
|
|
|
|
|
photometric systems are available, and users can incorporate their own filters,
|
|
|
|
|
spectra, and data.")
|
2024-01-27 16:37:27 +00:00
|
|
|
|
(license license:bsd-3))))
|
2023-05-30 19:58:31 +00:00
|
|
|
|
|
2024-07-02 20:55:15 +00:00
|
|
|
|
(define-public python-sbpy
|
|
|
|
|
(package
|
|
|
|
|
(name "python-sbpy")
|
|
|
|
|
(version "0.4.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "sbpy" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "18f3056fgzpvjj43m845wl9znl4dqxs8f8qv3gpay7kik4l8a1fc"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
;; See <https://github.com/NASA-Planetary-Science/sbpy/issues/397>.
|
|
|
|
|
#~(list "--ignore=sbpy/spectroscopy/tests/test_specgrad.py"
|
|
|
|
|
;; See <https://github.com/NASA-Planetary-Science/sbpy/issues/398>
|
|
|
|
|
"-k" (string-append "not test_from_fluxd"
|
|
|
|
|
" and not test_bandpass"
|
|
|
|
|
" and not test_spectral_density_vega_bp"))
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'set-home-env
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Tests require HOME to be set.
|
|
|
|
|
;; No such file or directory: '/homeless-shelter/.astropy'
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-ads
|
|
|
|
|
python-astropy
|
|
|
|
|
python-astroquery
|
|
|
|
|
python-ginga
|
|
|
|
|
python-numpy
|
|
|
|
|
python-photutils
|
|
|
|
|
python-pyyaml
|
|
|
|
|
python-scipy
|
|
|
|
|
python-synphot))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-pytest-doctestplus
|
|
|
|
|
python-pytest-remotedata
|
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(home-page "https://sbpy.org")
|
|
|
|
|
(synopsis "Python module for small-body planetary astronomy")
|
|
|
|
|
(description
|
|
|
|
|
"@code{sbpy} is a package for small-body planetary astronomy. It is
|
|
|
|
|
meant to supplement functionality provided by @code{astropy} with functions
|
|
|
|
|
and methods that are frequently used in the context of planetary astronomy
|
|
|
|
|
with a clear focus on asteroids and comets.
|
|
|
|
|
Features:
|
|
|
|
|
@itemize
|
|
|
|
|
@item observation planning tools tailored to moving objects
|
|
|
|
|
@item photometry models for resolved and unresolved observations
|
|
|
|
|
@item wrappers and tools for astrometry and orbit fitting
|
|
|
|
|
@item spectroscopy analysis tools and models for reflected solar light and
|
|
|
|
|
emission from gas
|
|
|
|
|
@item cometary gas and dust coma simulation and analysis tools
|
|
|
|
|
@item asteroid thermal models for flux estimation and size/albedo estimation
|
|
|
|
|
@item image enhancement tools for comet comae and PSF subtraction tools
|
|
|
|
|
@item lightcurve and shape analysis tools
|
|
|
|
|
@item access tools for various databases for orbital and physical data, as
|
|
|
|
|
well as ephemerides services
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2021-02-19 09:13:02 +00:00
|
|
|
|
(define-public python-sep
|
2024-05-20 22:12:28 +00:00
|
|
|
|
(package/inherit libsep
|
2021-02-19 09:13:02 +00:00
|
|
|
|
(name "python-sep")
|
2024-05-20 22:12:28 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-07-23 21:12:30 +00:00
|
|
|
|
(arguments
|
2024-05-20 22:12:28 +00:00
|
|
|
|
(list #:test-flags #~(list "test.py")))
|
2021-02-19 09:13:02 +00:00
|
|
|
|
(native-inputs
|
2024-05-20 22:12:28 +00:00
|
|
|
|
(list python-cython python-pytest))
|
2022-07-23 21:12:30 +00:00
|
|
|
|
(propagated-inputs
|
2024-05-20 22:12:28 +00:00
|
|
|
|
(list python-numpy))
|
|
|
|
|
(synopsis "Python library for Source Extraction and Photometry")))
|
2021-02-19 09:13:02 +00:00
|
|
|
|
|
2022-08-13 23:40:58 +00:00
|
|
|
|
(define-public python-suntime
|
|
|
|
|
(package
|
|
|
|
|
(name "python-suntime")
|
2024-03-11 14:27:36 +00:00
|
|
|
|
(version "1.3.2")
|
2024-03-11 14:32:52 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "suntime" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1kyd1r6zcs0jmh5gq74adrnb1h7dfr1mzjq4k4vbngfiga8gfd28"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-dateutil))
|
2022-08-13 23:40:58 +00:00
|
|
|
|
(home-page "https://github.com/SatAgro/suntime")
|
|
|
|
|
(synopsis "Sunset and sunrise time calculation python library")
|
|
|
|
|
(description
|
2024-03-11 14:32:52 +00:00
|
|
|
|
"Python library doing sunrise and sunset time calculation. Takes a
|
|
|
|
|
WGS84 (GPS) latitude/longitude as input as well as an UTC or local datetime
|
|
|
|
|
object.")
|
2022-08-13 23:40:58 +00:00
|
|
|
|
(license license:lgpl3+)))
|
|
|
|
|
|
2023-05-30 19:58:38 +00:00
|
|
|
|
(define-public python-synphot
|
|
|
|
|
(package
|
|
|
|
|
(name "python-synphot")
|
2024-04-16 10:59:04 +00:00
|
|
|
|
(version "1.4.0")
|
2023-12-18 23:31:37 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "synphot" version))
|
|
|
|
|
(sha256
|
2024-04-16 10:59:04 +00:00
|
|
|
|
(base32 "0fk860bxaqbamrq15pkqlbvhbf70y50cra2mgvv9r0cxq37isbi6"))))
|
2023-05-30 19:58:38 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
2023-11-17 12:16:19 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
2024-04-03 15:35:17 +00:00
|
|
|
|
(replace 'check
|
|
|
|
|
(lambda* (#:key tests? test-flags #:allow-other-keys)
|
|
|
|
|
(when tests?
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace")
|
|
|
|
|
;; Step out of the source directory to avoid interference; we
|
|
|
|
|
;; want to run the installed code with extensions etc.
|
|
|
|
|
(with-directory-excursion "/tmp"
|
|
|
|
|
(apply invoke "pytest" "-v" test-flags))))))))
|
2023-12-18 23:31:37 +00:00
|
|
|
|
(propagated-inputs
|
2024-01-15 18:39:45 +00:00
|
|
|
|
(list python-astropy
|
|
|
|
|
python-dust-extinction
|
2023-12-18 23:31:37 +00:00
|
|
|
|
python-numpy
|
2024-01-15 18:39:45 +00:00
|
|
|
|
python-scipy
|
|
|
|
|
python-specutils ))
|
2023-12-18 23:31:37 +00:00
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest
|
|
|
|
|
python-pytest-astropy
|
|
|
|
|
python-setuptools-scm))
|
2023-05-30 19:58:38 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/synphot_refactor")
|
|
|
|
|
(synopsis "Synthetic photometry using Astropy")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a replacement for IRAF STSDAS SYNPHOT and ASTROLIB
|
|
|
|
|
PYSYNPHOT, utilizing Astropy and covering the non-instrument specific portions
|
|
|
|
|
of the old packages.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-03-10 11:10:56 +00:00
|
|
|
|
(define-public python-asdf-compression
|
|
|
|
|
;; TODO: No release, change to tag when it's ready.
|
|
|
|
|
(let ((commit "57cc7e76fb4163be3e99fb740b36b5ec5ae96e49")
|
|
|
|
|
(revision "0"))
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-compression")
|
|
|
|
|
(version (git-version "0.0.1" revision commit))
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/asdf-format/asdf-compression")
|
|
|
|
|
(commit commit)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1g6iiyls950k66dmd0pbqqdvz74kksc4j191n0ik6fhjnkiwifgs"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'build 'set-version
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-numpy
|
|
|
|
|
python-pytest
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf
|
|
|
|
|
python-blosc
|
|
|
|
|
python-lz4
|
|
|
|
|
python-zstandard))
|
|
|
|
|
(home-page "https://github.com/asdf-format/asdf-fits-schemas")
|
|
|
|
|
(synopsis "ASDF extension to support various compression algorithms")
|
|
|
|
|
(description
|
|
|
|
|
"This package includes a plugin for the Python library ASDF to add
|
|
|
|
|
support for reading and writing various compression algorithms including:
|
|
|
|
|
@url{https://www.blosc.org/python-blosc/reference.html,Blosc},
|
|
|
|
|
@url{https://python-lz4.readthedocs.io/en/stable/lz4.frame.html,LZ4 Frame},
|
|
|
|
|
@url{http://facebook.github.io/zstd/,Zstandard}.")
|
|
|
|
|
(license license:bsd-3))))
|
|
|
|
|
|
2022-11-07 23:06:48 +00:00
|
|
|
|
(define-public python-asdf-standard
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-standard")
|
2024-03-09 18:17:23 +00:00
|
|
|
|
(version "1.1.1")
|
2022-11-07 23:06:48 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "asdf_standard" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-03-09 18:17:23 +00:00
|
|
|
|
"00k1fzc8y8j0ar1chq0nqyfw8bgkkjgrkm32ibn0kz2vn715nlq1"))))
|
2022-11-07 23:06:48 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
2024-03-09 18:17:23 +00:00
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
;; Remove tests requiring python-asdf where python-asdf requires
|
|
|
|
|
;; python-asdf-standard, break circular dependencies.
|
|
|
|
|
#~(list "--ignore=tests/test_asdf_schema.py"
|
|
|
|
|
"--ignore=tests/test_integration.py"
|
|
|
|
|
"--ignore=tests/test_manifests.py"
|
|
|
|
|
"--ignore=tests/test_yaml_schema.py")))
|
2022-11-07 23:06:48 +00:00
|
|
|
|
(native-inputs (list python-astropy
|
2023-04-15 03:49:43 +00:00
|
|
|
|
python-jsonschema
|
2022-11-07 23:06:48 +00:00
|
|
|
|
python-pypa-build
|
2023-04-15 01:50:13 +00:00
|
|
|
|
python-pytest
|
2022-11-07 23:06:48 +00:00
|
|
|
|
python-packaging
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs (list python-importlib-resources))
|
|
|
|
|
(home-page "https://asdf-standard.readthedocs.io/")
|
|
|
|
|
(synopsis "ASDF standard schemas")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides Python implementation of @acronym{ASDF, Advanced
|
|
|
|
|
Scientific Data Format} - a proposed next generation interchange format for
|
|
|
|
|
scientific data. ASDF aims to exist in the same middle ground that made FITS
|
|
|
|
|
so successful, by being a hybrid text and binary format: containing human
|
|
|
|
|
editable metadata for interchange, and raw binary data that is fast to load
|
|
|
|
|
and use. Unlike FITS, the metadata is highly structured and is designed
|
|
|
|
|
up-front for extensibility.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-01-14 23:40:21 +00:00
|
|
|
|
(define python-asdf-transform-schemas
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-transform-schemas")
|
2024-03-09 18:17:36 +00:00
|
|
|
|
(version "0.5.0")
|
2022-01-14 23:40:21 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "asdf_transform_schemas" version))
|
|
|
|
|
(sha256
|
2024-03-09 18:17:36 +00:00
|
|
|
|
(base32 "0as6dcf9dmxjh24gwdmqwbbrk56fhgsmzwi7af4llwvm4mw4rkw2"))))
|
2022-11-07 23:06:52 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-01-14 23:40:21 +00:00
|
|
|
|
(arguments
|
2022-11-07 23:06:52 +00:00
|
|
|
|
;; Dependency cycle with python-asdf
|
|
|
|
|
(list #:tests? #f))
|
|
|
|
|
(native-inputs (list python-setuptools-scm))
|
|
|
|
|
(propagated-inputs (list python-asdf-standard python-importlib-resources))
|
2022-01-14 23:40:21 +00:00
|
|
|
|
(home-page "https://github.com/asdf-format/asdf-transform-schemas")
|
|
|
|
|
(synopsis "ASDF schemas for transforms")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides ASDF schemas for validating transform tags. Users
|
|
|
|
|
should not need to install this directly; instead, install an implementation
|
|
|
|
|
package such as asdf-astropy.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-01-14 23:40:22 +00:00
|
|
|
|
(define python-asdf-coordinates-schemas
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-coordinates-schemas")
|
2024-03-11 17:41:28 +00:00
|
|
|
|
(version "0.3.0")
|
2022-01-14 23:40:22 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "asdf_coordinates_schemas" version))
|
|
|
|
|
(sha256
|
2024-03-11 17:41:28 +00:00
|
|
|
|
(base32 "0kk0rlzv0kkcw6fiwvps4n0x05867xc9hxyyzica31zcvhan12y9"))))
|
2023-05-24 21:51:53 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2024-01-27 15:34:30 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto")))
|
2022-01-14 23:40:22 +00:00
|
|
|
|
(native-inputs
|
2024-01-27 15:34:30 +00:00
|
|
|
|
(list python-pytest
|
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-setuptools-scm))
|
2022-01-14 23:40:22 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf))
|
|
|
|
|
(home-page "https://github.com/asdf-format/asdf-coordinates-schemas")
|
|
|
|
|
(synopsis "ASDF coordinates schemas")
|
|
|
|
|
(description "This package provides ASDF schemas for validating
|
|
|
|
|
coordinates tags. Users should not need to install this directly; instead,
|
|
|
|
|
install an implementation package such as asdf-astropy.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-11-07 23:06:50 +00:00
|
|
|
|
(define python-asdf-fits-schemas
|
|
|
|
|
;; TODO: No release, change to tag when it's ready.
|
2024-01-27 18:07:44 +00:00
|
|
|
|
(let ((commit "d1b5e7a12a49fe61d43855045bab106be34cd252")
|
|
|
|
|
(revision "1"))
|
2022-11-07 23:06:50 +00:00
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-fits-schemas")
|
|
|
|
|
(version (git-version "0.0.1" revision commit))
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/asdf-format/asdf-fits-schemas")
|
|
|
|
|
(commit commit)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-01-27 18:07:44 +00:00
|
|
|
|
"1h2xbk9c9l2959i3sdnwviv3z0hp1f0lba2vz9hpzgcm46qadqp8"))))
|
2022-11-07 23:06:50 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; Dependency cycle with python-asdf
|
|
|
|
|
#:tests? #f
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'build 'set-version
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
|
|
|
|
|
(native-inputs (list python-setuptools-scm))
|
|
|
|
|
(propagated-inputs (list python-asdf-standard python-importlib-resources))
|
|
|
|
|
(home-page "https://github.com/asdf-format/asdf-fits-schemas")
|
|
|
|
|
(synopsis "ASDF schemas to support the FITS format")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides ASDF schemas for validating FITS tags.")
|
|
|
|
|
(license license:bsd-3))))
|
|
|
|
|
|
2022-11-07 23:06:51 +00:00
|
|
|
|
(define python-asdf-time-schemas
|
|
|
|
|
;; TODO: No release, change to tag when it's ready.
|
2024-01-27 18:11:58 +00:00
|
|
|
|
(let ((commit "a3062066ee70f1b934f7339d1ce96a5c5f61f055")
|
|
|
|
|
(revision "3"))
|
2022-11-07 23:06:51 +00:00
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-time-schemas")
|
|
|
|
|
(version (git-version "0.0.1" revision commit))
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/asdf-format/asdf-time-schemas")
|
|
|
|
|
(commit commit)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-01-27 18:11:58 +00:00
|
|
|
|
"1i8lm2d18r6fadsch52dxc2zp1swkfa8w40s03albn7p290n4a97"))))
|
2022-11-07 23:06:51 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; Dependency cycle with python-asdf
|
|
|
|
|
#:tests? #f
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'build 'set-version
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
|
|
|
|
|
(native-inputs (list python-setuptools-scm))
|
|
|
|
|
(propagated-inputs (list python-asdf-standard
|
|
|
|
|
python-asdf-unit-schemas
|
|
|
|
|
python-importlib-resources))
|
|
|
|
|
(home-page "https://github.com/asdf-format/asdf-fits-schemas")
|
|
|
|
|
(synopsis "Schemas for storing time in ASDF")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides ASDF schemas for validating time tags.")
|
|
|
|
|
(license license:bsd-3))))
|
|
|
|
|
|
2022-11-07 23:06:49 +00:00
|
|
|
|
(define python-asdf-unit-schemas
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-unit-schemas")
|
2024-03-09 18:04:59 +00:00
|
|
|
|
(version "0.2.0")
|
2022-11-07 23:06:49 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "asdf_unit_schemas" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2024-03-09 18:04:59 +00:00
|
|
|
|
"0h24gvm1wip4gh3fw5ki8kwnvcy8gw6b6pajw3i1zvriamdw95fr"))))
|
2022-11-07 23:06:49 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
;; Dependency cycle with python-asdf
|
|
|
|
|
(list #:tests? #f))
|
|
|
|
|
(native-inputs (list python-setuptools-scm))
|
|
|
|
|
(propagated-inputs (list python-asdf-standard python-importlib-resources))
|
|
|
|
|
(home-page "https://asdf-unit-schemas.readthedocs.io/")
|
|
|
|
|
(synopsis "ASDF serialization schemas for the units defined by @code{astropy.units}")
|
|
|
|
|
(description "This package provides ASDF schemas for validating unit tags.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-03-05 22:56:06 +00:00
|
|
|
|
(define-public python-asdf-zarr
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-zarr")
|
2024-07-01 21:34:37 +00:00
|
|
|
|
(version "0.0.4")
|
2024-03-05 22:56:06 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "asdf_zarr" version))
|
|
|
|
|
(sha256
|
2024-07-01 21:34:37 +00:00
|
|
|
|
(base32 "0xddz4hnsypyvqxhi43alaqh2vl1ripcl4p63qn6dk2v90lra8c0"))))
|
2024-03-05 22:56:06 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf python-fsspec python-zarr))
|
|
|
|
|
(native-inputs
|
gnu: python-asdf: Adjust inputs.
python-asdf requires python-semantic-version during runtime which may be
reproduced by:
guix shell python-asdf python -- python3 -c 'import asdf'
<...>
ModuleNotFoundError: No module named 'semantic_version'
* gnu/packages/astronomy.scm (python-asdf): Adjust inputs.
[native-inputs]: Remove python-semantic-version.
[propagated-inputs]: Add python-semantic-version.
(python-asdf-astropy, python-asdf-compression, python-asdf-coordinates-schemas,
python-asdf-wcs-schemas, python-asdf-zarr, python-astroalignn, python-ccdproc,
python-crds, python-ginga, python-gwcs, python-photutils, python-rad,
python-reproject, python-roman-datamodels, python-spectral-cube,
python-specutils, python-stcal, python-stdatamodels, python-stpipe,
python-stsynphot, python-sunpy, python-synphot, python-tweakwcs): Remove
python-semantic-version from native or propagated inputs.
Change-Id: I96bf57f77c327f4ff208e0b173e84bcdd4c287da
Reported-by: Iliya Tikhonenko <tikhonenko@mpe.mpg.de>
2024-04-20 20:53:00 +00:00
|
|
|
|
(list python-pytest python-setuptools-scm))
|
2024-03-05 22:56:06 +00:00
|
|
|
|
(home-page "https://github.com/asdf-format/asdf-zarr")
|
|
|
|
|
(synopsis "Asdf extension to support Zarr arrays")
|
|
|
|
|
(description
|
|
|
|
|
"This package includes an extension for the Python library asdf to add
|
|
|
|
|
support for reading and writing chunked
|
|
|
|
|
@url{https://zarr.readthedocs.io/en/stable/,Zarr} arrays, a file storage
|
|
|
|
|
format for chunked, compressed, N-dimensional arrays based on an open-source
|
|
|
|
|
specification.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-01-14 23:40:24 +00:00
|
|
|
|
(define python-asdf-wcs-schemas
|
|
|
|
|
(package
|
|
|
|
|
(name "python-asdf-wcs-schemas")
|
2024-03-11 17:41:30 +00:00
|
|
|
|
(version "0.4.0")
|
2022-01-14 23:40:24 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "asdf_wcs_schemas" version))
|
|
|
|
|
(sha256
|
2024-03-11 17:41:30 +00:00
|
|
|
|
(base32 "1d08ng890xc1ilf3y1hrimx09x990wvg9g18n0ijwvpilnw49fy0"))))
|
2023-05-24 21:51:36 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2024-01-28 11:18:59 +00:00
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:test-flags #~(list "tests")))
|
2022-01-14 23:40:24 +00:00
|
|
|
|
(native-inputs
|
2024-01-28 11:18:59 +00:00
|
|
|
|
(list python-asdf
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-openfiles
|
|
|
|
|
python-setuptools-scm))
|
2022-01-14 23:40:24 +00:00
|
|
|
|
(propagated-inputs
|
2024-03-11 17:41:30 +00:00
|
|
|
|
(list python-asdf-coordinates-schemas
|
|
|
|
|
python-asdf-standard
|
|
|
|
|
python-asdf-transform-schemas))
|
2022-01-14 23:40:24 +00:00
|
|
|
|
(home-page "https://github.com/asdf-format/asdf-wcs-schemas")
|
|
|
|
|
(synopsis "ASDF WCS Schemas")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides ASDF schemas for validating World Coordinate
|
|
|
|
|
System (WCS) tags. Users should not need to install this directly; instead,
|
|
|
|
|
install an implementation package such as gwcs.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2022-01-14 23:40:25 +00:00
|
|
|
|
(define-public python-gwcs
|
|
|
|
|
(package
|
|
|
|
|
(name "python-gwcs")
|
2024-03-11 17:41:30 +00:00
|
|
|
|
(version "0.21.0")
|
2022-01-14 23:40:25 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "gwcs" version))
|
|
|
|
|
(sha256
|
2024-03-11 17:41:30 +00:00
|
|
|
|
(base32 "1fn5l4v236bl7xqi1is40c2q57dji8by98iwqcndfnmjwqf7zllc"))))
|
2022-11-07 23:06:56 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2022-01-14 23:40:25 +00:00
|
|
|
|
(native-inputs
|
2023-04-15 03:49:43 +00:00
|
|
|
|
(list python-jsonschema
|
2022-01-14 23:40:25 +00:00
|
|
|
|
python-jmespath
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-doctestplus
|
|
|
|
|
python-pyyaml
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf
|
|
|
|
|
python-asdf-astropy
|
|
|
|
|
python-asdf-wcs-schemas
|
|
|
|
|
python-astropy
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy))
|
|
|
|
|
(home-page "https://gwcs.readthedocs.io/en/latest/")
|
|
|
|
|
(synopsis "Generalized World Coordinate System")
|
|
|
|
|
(description "Generalized World Coordinate System (GWCS) is an Astropy
|
|
|
|
|
affiliated package providing tools for managing the World Coordinate System of
|
|
|
|
|
astronomical data.
|
|
|
|
|
|
|
|
|
|
GWCS takes a general approach to the problem of expressing transformations
|
|
|
|
|
between pixel and world coordinates. It supports a data model which includes
|
|
|
|
|
the entire transformation pipeline from input coordinates (detector by
|
|
|
|
|
default) to world coordinates.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-05-30 19:58:32 +00:00
|
|
|
|
(define-public python-rad
|
|
|
|
|
(package
|
|
|
|
|
(name "python-rad")
|
2024-05-20 22:12:42 +00:00
|
|
|
|
(version "0.20.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "rad" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "05b7qjhahzfjdp820m3qm69wrzb73njjqrzkk7hxkd8gbrbp0mj1"))))
|
2023-05-30 19:58:32 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
2023-09-07 22:32:22 +00:00
|
|
|
|
(list
|
2024-02-14 14:32:48 +00:00
|
|
|
|
;; Ignore tests requiring python-crds to break cycle:
|
2023-09-07 22:32:22 +00:00
|
|
|
|
;; python-rad -> python-roman-datamodels -> python-crds -> python-rad
|
2024-02-14 14:32:48 +00:00
|
|
|
|
#:test-flags #~(list "--ignore=tests/test_schemas.py")))
|
|
|
|
|
(native-inputs
|
gnu: python-asdf: Adjust inputs.
python-asdf requires python-semantic-version during runtime which may be
reproduced by:
guix shell python-asdf python -- python3 -c 'import asdf'
<...>
ModuleNotFoundError: No module named 'semantic_version'
* gnu/packages/astronomy.scm (python-asdf): Adjust inputs.
[native-inputs]: Remove python-semantic-version.
[propagated-inputs]: Add python-semantic-version.
(python-asdf-astropy, python-asdf-compression, python-asdf-coordinates-schemas,
python-asdf-wcs-schemas, python-asdf-zarr, python-astroalignn, python-ccdproc,
python-crds, python-ginga, python-gwcs, python-photutils, python-rad,
python-reproject, python-roman-datamodels, python-spectral-cube,
python-specutils, python-stcal, python-stdatamodels, python-stpipe,
python-stsynphot, python-sunpy, python-synphot, python-tweakwcs): Remove
python-semantic-version from native or propagated inputs.
Change-Id: I96bf57f77c327f4ff208e0b173e84bcdd4c287da
Reported-by: Iliya Tikhonenko <tikhonenko@mpe.mpg.de>
2024-04-20 20:53:00 +00:00
|
|
|
|
(list python-pytest python-setuptools-scm))
|
2024-05-20 22:12:42 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf python-asdf-astropy))
|
2023-05-30 19:58:32 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/rad")
|
|
|
|
|
(synopsis "Roman Attribute Dictionary")
|
|
|
|
|
(description
|
|
|
|
|
"@acronym{RAD, The Roman Attribute Dictionary} is package which defines
|
|
|
|
|
schemas for the Nancy Grace Roman Space Telescope shared attributes for
|
|
|
|
|
processing and archive. These schemas are schemas for the ASDF file file
|
|
|
|
|
format, which are used by ASDF to serialize and deserialize data for the Nancy
|
|
|
|
|
Grace Roman Space Telescope.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2023-10-11 01:39:31 +00:00
|
|
|
|
(define-public python-radio-beam
|
|
|
|
|
(package
|
|
|
|
|
(name "python-radio-beam")
|
2023-12-16 04:31:38 +00:00
|
|
|
|
(version "0.3.7")
|
2023-10-11 01:39:31 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "radio-beam" version))
|
|
|
|
|
(sha256
|
2023-12-16 04:31:38 +00:00
|
|
|
|
(base32 "0dg6vqdhmzh47awdkkcbf455gw6if2qwxyhcqbq2dkhbwsx680gc"))))
|
2023-10-11 01:39:31 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy
|
|
|
|
|
python-six))
|
2023-10-31 16:01:06 +00:00
|
|
|
|
(native-inputs (list python-pytest-astropy python-setuptools-scm))
|
2023-10-11 01:39:31 +00:00
|
|
|
|
(home-page "https://radio-beam.readthedocs.io/en/latest/")
|
|
|
|
|
(synopsis "Operations for radio astronomy beams with Astropy")
|
|
|
|
|
(description
|
|
|
|
|
"Radio Beam is a simple toolkit for reading beam information from FITS
|
|
|
|
|
headers and manipulating beams.
|
|
|
|
|
Some example applications include:
|
|
|
|
|
@itemize
|
|
|
|
|
@item Convolution and deconvolution
|
|
|
|
|
@item Unit conversion (Jy to/from K)
|
|
|
|
|
@item Handle sets of beams for spectral cubes with varying resolution between
|
|
|
|
|
channels
|
|
|
|
|
@item Find the smallest common beam from a set of beams
|
|
|
|
|
@item Add the beam shape to a matplotlib plot
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2024-01-29 13:13:48 +00:00
|
|
|
|
(define-public python-radiospectra
|
|
|
|
|
(package
|
|
|
|
|
(name "python-radiospectra")
|
2024-03-11 18:38:34 +00:00
|
|
|
|
(version "0.5.0")
|
2024-01-29 13:13:48 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "radiospectra" version))
|
|
|
|
|
(sha256
|
2024-03-11 18:38:34 +00:00
|
|
|
|
(base32 "0nw71a7i875lfwbwhpc80nvwalb7iq3fynfkbngx6f6jb3v10dgs"))))
|
2024-01-29 13:13:48 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'set-home-env
|
|
|
|
|
(lambda _
|
|
|
|
|
;; Tests require HOME to be set.
|
|
|
|
|
;; Permission denied: '/homeless-shelter'
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-cdflib
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-numpy
|
|
|
|
|
python-scipy
|
|
|
|
|
python-sunpy))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest-astropy
|
|
|
|
|
python-setuptools-scm
|
|
|
|
|
python-sunpy-soar))
|
|
|
|
|
(home-page "https://docs.sunpy.org/projects/radiospectra")
|
|
|
|
|
(synopsis "Support for radio spectra on solar physics")
|
|
|
|
|
(description
|
|
|
|
|
"@code{radiospectra} provides support for some type of radio spectra in
|
|
|
|
|
solar physics.")
|
|
|
|
|
(license license:bsd-2)))
|
|
|
|
|
|
2023-05-30 19:58:33 +00:00
|
|
|
|
(define-public python-roman-datamodels
|
|
|
|
|
(package
|
|
|
|
|
(name "python-roman-datamodels")
|
2024-05-20 22:12:43 +00:00
|
|
|
|
(version "0.20.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "roman_datamodels" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1918wnssf478w168mhv009jkirmny8hyfxrkwvl8iish36dcqagh"))))
|
2023-05-30 19:58:33 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
2023-09-07 22:32:24 +00:00
|
|
|
|
(list
|
2024-01-27 18:39:17 +00:00
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto")
|
2023-09-07 22:32:23 +00:00
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'set-env
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" "/tmp"))))))
|
2024-05-20 22:12:43 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-asdf
|
|
|
|
|
python-asdf-astropy
|
|
|
|
|
python-astropy
|
|
|
|
|
python-gwcs
|
|
|
|
|
python-numpy
|
|
|
|
|
python-psutil
|
|
|
|
|
python-rad))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-pytest
|
|
|
|
|
python-pytest-doctestplus
|
|
|
|
|
python-pytest-env
|
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-setuptools-scm))
|
2023-05-30 19:58:33 +00:00
|
|
|
|
(home-page "https://github.com/spacetelescope/roman_datamodels")
|
|
|
|
|
(synopsis "Roman Datamodels Support")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a Python package of Roman Datamodels for the
|
|
|
|
|
calibration pipelines started with the @acronym{JWST, James Webb Space
|
|
|
|
|
Telescope} calibration pipelines. The goal for the JWST pipelines was motivated
|
|
|
|
|
primarily by the need to support FITS data files, specifically with isolating
|
|
|
|
|
the details of where metadata and data were located in the FITS file from the
|
|
|
|
|
representation of the same items within the Python code. That is not a concern
|
|
|
|
|
for Roman since FITS format data files will not be used by the Roman calibration
|
|
|
|
|
pipelines.")
|
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
|
2021-02-07 23:38:58 +00:00
|
|
|
|
(define-public python-skyfield
|
|
|
|
|
(package
|
|
|
|
|
(name "python-skyfield")
|
2024-06-18 08:50:01 +00:00
|
|
|
|
(version "1.49")
|
2021-02-07 23:38:58 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
2024-04-03 20:42:53 +00:00
|
|
|
|
(method git-fetch) ; PyPI tarball lacks test data
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/skyfielders/python-skyfield")
|
|
|
|
|
(commit version)))
|
|
|
|
|
(file-name (git-file-name name version))
|
2021-02-07 23:38:58 +00:00
|
|
|
|
(sha256
|
2024-06-18 08:50:01 +00:00
|
|
|
|
(base32 "1rk71lzy8w28f2kzhxb3pyndncrj91jay43nvqlrlzjxi2rbg7ix"))))
|
2024-04-03 20:42:53 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
2021-02-07 23:38:58 +00:00
|
|
|
|
(arguments
|
2024-04-03 20:42:53 +00:00
|
|
|
|
(list
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-m" "assay" "--batch" "skyfield.tests")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(replace 'check
|
|
|
|
|
(lambda* (#:key tests? test-flags #:allow-other-keys)
|
|
|
|
|
(when tests?
|
|
|
|
|
(with-directory-excursion "ci"
|
|
|
|
|
(apply invoke "python" test-flags))))))))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-assay python-pandas))
|
2024-01-15 20:16:08 +00:00
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-certifi
|
|
|
|
|
python-jplephem
|
|
|
|
|
python-numpy
|
|
|
|
|
python-sgp4))
|
2021-02-07 23:38:58 +00:00
|
|
|
|
(home-page "https://rhodesmill.org/skyfield/")
|
|
|
|
|
(synopsis "Astronomy for Python")
|
|
|
|
|
(description
|
|
|
|
|
"Skyfield computes positions for the stars, planets, and satellites in
|
|
|
|
|
orbit around the Earth.")
|
|
|
|
|
(license license:expat)))
|
2024-06-06 15:28:50 +00:00
|
|
|
|
|
|
|
|
|
(define-public python-tweakwcs
|
|
|
|
|
(package
|
|
|
|
|
(name "python-tweakwcs")
|
2024-07-18 12:28:42 +00:00
|
|
|
|
(version "0.8.8")
|
2024-06-06 15:28:50 +00:00
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "tweakwcs" version))
|
|
|
|
|
(sha256
|
2024-07-18 12:28:42 +00:00
|
|
|
|
(base32 "148as0x1szk1wv13bwk947qs3rw5xj2286ccdbhzfzarng58a386"))))
|
2024-06-06 15:28:50 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-astropy
|
|
|
|
|
python-gwcs
|
|
|
|
|
python-numpy
|
|
|
|
|
python-packaging
|
|
|
|
|
python-spherical-geometry
|
|
|
|
|
python-stsci-imagestats
|
|
|
|
|
python-stsci-stimage))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-codecov
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-cov
|
|
|
|
|
python-scipy
|
|
|
|
|
python-setuptools-scm))
|
|
|
|
|
(home-page "https://tweakwcs.readthedocs.io/en/latest/")
|
|
|
|
|
(synopsis
|
|
|
|
|
"Algorithms for matching and aligning catalogs and for tweaking the WCS")
|
|
|
|
|
(description
|
|
|
|
|
"@code{tweakwcs} is a package that provides core algorithms for computing
|
|
|
|
|
and applying corrections to @code{WCS} objects such as to minimize mismatch
|
|
|
|
|
between image and reference catalogs. Currently only aligning images with
|
|
|
|
|
@code{FITS WCS} and @code{JWST gWCS} are supported.")
|
|
|
|
|
(license license:bsd-3)))
|
2023-05-30 19:58:45 +00:00
|
|
|
|
|
2024-05-20 22:12:49 +00:00
|
|
|
|
(define-public python-viresclient
|
|
|
|
|
(package
|
|
|
|
|
(name "python-viresclient")
|
|
|
|
|
(version "0.11.6")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "viresclient" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1npn5ka0cflvl6ngf5b08z59dh79hnyh5v2z4sf0872q9zkwmjjw"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-flit-core python-pytest))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-cdflib
|
|
|
|
|
python-jinja2
|
|
|
|
|
python-netcdf4
|
|
|
|
|
python-pandas
|
|
|
|
|
python-requests
|
|
|
|
|
python-tables
|
|
|
|
|
python-tqdm
|
|
|
|
|
python-xarray))
|
|
|
|
|
(home-page "https://viresclient.readthedocs.io/en/latest/")
|
|
|
|
|
(synopsis "Python client for interacting with a VirES server")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a Python client for interacting with a
|
|
|
|
|
@code{VirES} server, of which there are two: VirES for
|
|
|
|
|
@url{https://vires.services, Swarm} and VirES for
|
|
|
|
|
@url{https://aeolus.services, Aeolus}")
|
|
|
|
|
(license license:expat)))
|
|
|
|
|
|
2023-05-30 19:58:45 +00:00
|
|
|
|
(define-public python-wiimatch
|
|
|
|
|
(package
|
|
|
|
|
(name "python-wiimatch")
|
2023-11-17 12:16:05 +00:00
|
|
|
|
(version "0.3.2")
|
2023-05-30 19:58:45 +00:00
|
|
|
|
(source (origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "wiimatch" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32
|
2023-11-17 12:16:05 +00:00
|
|
|
|
"15kq7z30m9i286ncs9xvpaq3dq1p5fa47jz21prq146qwr7j6dm8"))))
|
2023-05-30 19:58:45 +00:00
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(propagated-inputs (list python-numpy python-scipy))
|
|
|
|
|
(native-inputs (list python-codecov python-pytest python-pytest-cov
|
|
|
|
|
python-pytest-doctestplus python-setuptools-scm))
|
|
|
|
|
(home-page "https://github.com/spacetelescope/wiimatch")
|
|
|
|
|
(synopsis
|
|
|
|
|
"Optimal matching of weighted N-dimensional image intensity data")
|
|
|
|
|
(description
|
|
|
|
|
"@code{wiimatch} is a package that provides core computational algorithms
|
|
|
|
|
for optimal @code{matching} of weighted N-dimensional image intensity data
|
|
|
|
|
using (multivariate) polynomials.")
|
|
|
|
|
(license license:bsd-3)))
|
2023-07-06 22:13:05 +00:00
|
|
|
|
|
2024-05-20 22:12:53 +00:00
|
|
|
|
(define-public python-yt
|
|
|
|
|
(package
|
|
|
|
|
(name "python-yt")
|
|
|
|
|
(version "4.3.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "yt" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "03jy35vyniyd1pd3sv0zpd2f3ks2iyqw65xv28ids8nw6v1vavbv"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
#:build-backend "setuptools.build_meta"
|
|
|
|
|
#:test-flags
|
|
|
|
|
#~(list "-n" "auto")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-after 'unpack 'relax-requirements
|
|
|
|
|
(lambda _
|
|
|
|
|
(substitute* "pyproject.toml"
|
|
|
|
|
;; XXX: Updating ipywidgets requires long chain of rebuilds,
|
|
|
|
|
;; maybe for python-team.
|
|
|
|
|
;;
|
|
|
|
|
;; ipywidgets>=8.0.0
|
|
|
|
|
((">=8.0.0") ">=7.6.3"))))
|
|
|
|
|
(add-before 'check 'prepare-test-environment
|
|
|
|
|
(lambda _
|
|
|
|
|
(setenv "HOME" "/tmp")
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-cmyt
|
|
|
|
|
python-ewah-bool-utils
|
|
|
|
|
python-ipywidgets
|
|
|
|
|
python-matplotlib
|
|
|
|
|
python-more-itertools-next
|
|
|
|
|
python-numpy
|
|
|
|
|
python-packaging
|
|
|
|
|
python-pillow
|
|
|
|
|
python-tomli-w
|
|
|
|
|
python-tqdm
|
|
|
|
|
python-unyt))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-cython-3
|
|
|
|
|
python-nose
|
|
|
|
|
python-nose-exclude
|
|
|
|
|
python-nose-timer
|
|
|
|
|
python-pyaml
|
|
|
|
|
python-pytest
|
|
|
|
|
python-pytest-mpl
|
|
|
|
|
python-pytest-xdist
|
|
|
|
|
python-setuptools
|
|
|
|
|
python-sympy))
|
|
|
|
|
(home-page "http://yt-project.org/")
|
|
|
|
|
(synopsis "Analyzing and visualizing volumetric data framework")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides a structured, variable-resolution meshes,
|
|
|
|
|
unstructured meshes, and discrete or sampled data such as particles. Focused on
|
|
|
|
|
driving physically-meaningful inquiry, it has been applied in domains such as
|
|
|
|
|
astrophysics, seismology, nuclear engineering, molecular dynamics, and
|
|
|
|
|
oceanography.")
|
|
|
|
|
(license (list
|
|
|
|
|
;; COPYING.txt: for Python code.
|
|
|
|
|
;;
|
|
|
|
|
;; yt uses a shared copyright model. Each contributor maintains
|
|
|
|
|
;; copyright over their contributions to yt. But, it is important
|
|
|
|
|
;; to note that these contributions are typically only changes to
|
|
|
|
|
;; the repositories. Thus, the yt source code, in its entirety is
|
|
|
|
|
;; not the copyright of any single person or institution. Instead,
|
|
|
|
|
;; it is the collective copyright of the entire yt Development
|
|
|
|
|
;; Team. If individual contributors want to maintain a record of
|
|
|
|
|
;; what changes/contributions they have specific copyright on,
|
|
|
|
|
;; they should indicate their copyright in the commit message of
|
|
|
|
|
;; the change, when they commit the change to one of the yt
|
|
|
|
|
;; repositories.
|
|
|
|
|
license:bsd-3
|
|
|
|
|
;; yt/frontends/artio/artio_headers/LICENSE: for C code.
|
|
|
|
|
license:lgpl3))))
|
|
|
|
|
|
2024-06-11 21:53:44 +00:00
|
|
|
|
(define-public python-yt-astro-analysis
|
|
|
|
|
(package
|
|
|
|
|
(name "python-yt-astro-analysis")
|
|
|
|
|
(version "1.1.3")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri (pypi-uri "yt_astro_analysis" version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1fb3sdp6hq2c4c28pd33v9yj14x9l7qizf3y3qpl594qdq1ffmpi"))))
|
|
|
|
|
(build-system pyproject-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
(list
|
|
|
|
|
;; Disable test which require MPI setup and failed to run, check why.
|
|
|
|
|
#:test-flags #~(list "--ignore=test_halo_finders_ts.py")
|
|
|
|
|
#:phases
|
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
|
(add-before 'check 'build-extensions
|
|
|
|
|
(lambda _
|
|
|
|
|
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
|
|
|
|
|
(propagated-inputs
|
|
|
|
|
(list python-h5py
|
|
|
|
|
python-numpy
|
|
|
|
|
python-packaging
|
|
|
|
|
python-yt))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list python-cython
|
|
|
|
|
python-nose
|
|
|
|
|
python-tomli))
|
|
|
|
|
(home-page "https://github.com/yt-project/yt_astro_analysis")
|
|
|
|
|
(synopsis "YT astrophysical analysis modules")
|
|
|
|
|
(description
|
|
|
|
|
"This package provides an @code{yt} extension package for astrophysical
|
|
|
|
|
analysis. This package contains functionality for:
|
|
|
|
|
|
|
|
|
|
@itemize
|
|
|
|
|
@item halo finding and analysis
|
|
|
|
|
@item lightcones
|
|
|
|
|
@item planning cosmological simulations for making lightcones and lightrays
|
|
|
|
|
@item exporting to the RADMC-3D radiation transport code
|
|
|
|
|
@item creating PPV FITS cubes
|
|
|
|
|
@end itemize")
|
|
|
|
|
(license (list license:bsd-3 license:lgpl3))))
|
|
|
|
|
|
2024-06-06 22:04:26 +00:00
|
|
|
|
(define-public qfits
|
|
|
|
|
(package
|
|
|
|
|
(name "qfits")
|
|
|
|
|
(version "6.2.0")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method url-fetch)
|
|
|
|
|
(uri
|
|
|
|
|
(string-append "ftp://ftp.eso.org/pub/qfits/qfits-" version ".tar.gz"))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "0m2b21mim3a7wgfg3ph2w5hv7mdvr03jmmhzipc0wcahijglcw9j"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(home-page "https://www.eso.org/sci/software/eclipse/qfits/")
|
|
|
|
|
(synopsis "C library offering access to astronomical FITS files")
|
|
|
|
|
(description
|
|
|
|
|
"@code{qfits} is a C library giving access to FITS file internals, both
|
|
|
|
|
for reading and writing.")
|
|
|
|
|
(license license:gpl2+)))
|
|
|
|
|
|
2024-06-06 22:26:59 +00:00
|
|
|
|
(define-public stuff
|
|
|
|
|
(package
|
|
|
|
|
(name "stuff")
|
|
|
|
|
(version "2.0.1")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/astromatic/stuff")
|
|
|
|
|
;; XXX: No version tag available in GitHub.
|
|
|
|
|
;; See: https://github.com/astromatic/stuff/issues/6
|
|
|
|
|
(commit "9008dc022ef53331092da248cf0a794abd6783bf")))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "004sry5lqqm7s9x4l3agysp3n63y3ga35x1rwwda4m6dc6zvla6b"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list autoconf automake libtool pkg-config))
|
|
|
|
|
(home-page "https://www.astromatic.net/software/stuff")
|
|
|
|
|
(synopsis "Astronomical catalogue simulation")
|
|
|
|
|
(description
|
|
|
|
|
"Stuff is a program that simulates \"perfect\" astronomical catalogues.
|
|
|
|
|
It generates object lists in ASCII which can read by the SkyMaker program to
|
|
|
|
|
produce realistic astronomical fields. Stuff is part of the
|
|
|
|
|
@uref{https://www.astromatic.net/projects/efigi, EFIGI} development project.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2024-06-06 21:56:37 +00:00
|
|
|
|
(define-public sunclock
|
|
|
|
|
(let ((commit "f4106eb0a81f7594726d6b2859efd8fc64cc1225")
|
|
|
|
|
(revision "1"))
|
|
|
|
|
(package
|
|
|
|
|
(name "sunclock")
|
|
|
|
|
(version (git-version "3.57" revision commit))
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/nongiach/Sunclock")
|
|
|
|
|
(commit commit)))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "1rczdpmhvfw57b9r793vq8vqlbdhlkgj52fxwrdfl6cwj95a9kv2"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(arguments
|
|
|
|
|
`(#:make-flags
|
|
|
|
|
(list (string-append "DESTDIR=" %output)
|
|
|
|
|
;; Fix incorrect argument given to gcc. Error message:
|
|
|
|
|
;; "gcc: error: DefaultGcc2AMD64Opt: No such file or directory"
|
|
|
|
|
"CDEBUGFLAGS=")
|
|
|
|
|
#:phases
|
|
|
|
|
(modify-phases %standard-phases
|
|
|
|
|
(replace 'configure
|
|
|
|
|
(lambda _
|
|
|
|
|
(chdir "sunclock-3.57")
|
|
|
|
|
(substitute* "Imakefile"
|
|
|
|
|
(("^MANDIR=/X11R6/man/man1")
|
|
|
|
|
"MANDIR=/share/man/man1")
|
|
|
|
|
(("^BINDIR=/X11R6/bin")
|
|
|
|
|
"BINDIR=/bin")
|
|
|
|
|
;; Disable ZLIB support for vmf files because zlib implements
|
|
|
|
|
;; `gzgetc` as a macro instead of a function, which results in
|
|
|
|
|
;; a compilation error.
|
|
|
|
|
((" -DZLIB") "")
|
|
|
|
|
((" -lz") "")
|
|
|
|
|
(("cd \\$\\(DESTDIR\\)\\$\\(SHAREDIR\\)/earthmaps/vmf ; \
|
|
|
|
|
gzip -f \\*.vmf")
|
|
|
|
|
""))
|
|
|
|
|
;; Generate Makefile.
|
|
|
|
|
(invoke "xmkmf"))))
|
|
|
|
|
#:tests? #f)) ; No check target.
|
|
|
|
|
(inputs
|
|
|
|
|
(list libjpeg-turbo libpng libx11 libxpm))
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list imake))
|
|
|
|
|
(home-page "https://github.com/nongiach/Sunclock")
|
|
|
|
|
(synopsis
|
|
|
|
|
"Map of the Earth that shows which portion is illuminated by the Sun")
|
|
|
|
|
(description
|
|
|
|
|
"Sunclock displays a map of the Earth and shows which portion is
|
|
|
|
|
illuminated by the Sun. It can commute between two states, the \"clock window\"
|
|
|
|
|
and the \"map window\". The clock window displays a small map of the Earth and
|
|
|
|
|
therefore occupies little space on the screen, while the \"map window\" displays
|
|
|
|
|
a large map and offers more advanced functions: local time of cities, Sun and
|
|
|
|
|
Moon position, etc.")
|
|
|
|
|
(license license:gpl2+))))
|
|
|
|
|
|
2024-06-06 21:53:59 +00:00
|
|
|
|
(define-public swarp
|
|
|
|
|
(package
|
|
|
|
|
(name "swarp")
|
|
|
|
|
(version "2.41.5")
|
|
|
|
|
(source
|
|
|
|
|
(origin
|
|
|
|
|
(method git-fetch)
|
|
|
|
|
(uri (git-reference
|
|
|
|
|
(url "https://github.com/astromatic/swarp")
|
|
|
|
|
(commit (string-append version))))
|
|
|
|
|
(file-name (git-file-name name version))
|
|
|
|
|
(sha256
|
|
|
|
|
(base32 "00463r5rd4xl74xs4h1n4gl2qk7v9p5nw9x05pbzgh8jm77q90qq"))))
|
|
|
|
|
(build-system gnu-build-system)
|
|
|
|
|
(native-inputs
|
|
|
|
|
(list automake autoconf libtool pkg-config))
|
|
|
|
|
(inputs
|
|
|
|
|
(list cfitsio))
|
|
|
|
|
(home-page "https://www.astromatic.net/software/swarp")
|
|
|
|
|
(synopsis "FITS image resampling and co-addition")
|
|
|
|
|
(description
|
|
|
|
|
"SWarp is a program that resamples and co-adds together FITS images using
|
|
|
|
|
any arbitrary astrometric projection defined in the WCS standard.")
|
|
|
|
|
(license license:gpl3+)))
|
|
|
|
|
|
2023-07-06 22:13:05 +00:00
|
|
|
|
(define-public unsio
|
|
|
|
|
;; There is no versioned tag, use the latest commit.
|
|
|
|
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(let ((commit "25e52468298e1194c9726ef5dba9d5fbb46870f5")
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(revision "0"))
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(package
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(name "unsio")
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(version (git-version "1.3.3" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://gitlab.lam.fr/infrastructure/unsio")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"110i2p5608zhh5w3pf3b5r2651hykw2ayspgq6vpqsffhya1p170"))
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(modules '((guix build utils)))
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(snippet
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;; force installation into lib/ instead of lib64/
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#~(substitute* "cmake/DetectCpackGenerator.cmake"
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(("lib64") "lib")))))
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(build-system cmake-build-system)
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(arguments
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(list #:tests? #f ; no tests
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#:build-type "Release" ; to improve performace
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#:configure-flags #~(list "-DCMAKE_CXX_STANDARD=14")))
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(inputs (list gfortran hdf5 perl sqlite zlib))
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(home-page "https://projets.lam.fr/projects/unsio/wiki")
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(synopsis "Input and output routines for n-body file formats")
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(description
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"@acronym{UNSIO, Universal Nbody Snapshot Input Output} provides
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an API for performing input and output operations on different kinds of
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n-body file formats (nemo, Gadget binaries 1 and 2, Gadget hdf5, Ramses).")
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(license license:cecill))))
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2024-06-06 15:21:49 +00:00
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2024-06-06 22:21:31 +00:00
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(define-public wcstools
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(package
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(name "wcstools")
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(version "3.9.7")
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(source
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(origin
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(method url-fetch)
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(uri (string-append
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"http://tdc-www.harvard.edu/software/wcstools/wcstools-"
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version ".tar.gz"))
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(sha256
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(base32 "125hqzspvqrx6372smzsmxwg06ib2arjc5awnwnq53w1xdq6jpsj"))
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(patches (search-patches "wcstools-extend-makefiles.patch"))))
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(build-system gnu-build-system)
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(arguments
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(list
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#:tests? #f ;No tests provided.
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#:make-flags
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#~(list (string-append "CC=" #$(cc-for-target))
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(string-append "PREFIX=" #$output))
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#:phases
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#~(modify-phases %standard-phases
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(delete 'configure))))
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(home-page "http://tdc-www.harvard.edu/software/wcstools/")
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(synopsis "Handle the WCS of a FITS image")
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(description
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"WCSTools is a set of software utilities, written in C, which create,
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display and manipulate the world coordinate system of a FITS or IRAF image,
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using specific keywords in the image header which relate pixel position within
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the image to position on the sky. Auxillary programs search star catalogs and
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manipulate images.")
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(license license:gpl2+)))
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2024-06-06 22:17:20 +00:00
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(define-public weightwatcher
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(package
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(name "weightwatcher")
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(version "1.12")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/astromatic/weightwatcher")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0701z6bdqq32jv7ga3n6jh27q684ni0hbfjm1mak7rh0qqx089gi"))))
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(build-system gnu-build-system)
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(arguments
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(list
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#:configure-flags
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#~(list "CFLAGS=-fcommon"))) ; fix build with GCC 10
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(home-page "https://www.astromatic.net/software/weightwatcher")
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(synopsis "Weight-map/flag-map multiplexer and rasteriser")
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(description
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"Weightwatcher is a program hat combines weight-maps, flag-maps and
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polygon data in order to produce control maps which can directly be used in
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astronomical image-processing packages like Drizzle, Swarp or SExtractor.")
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(license license:gpl3+)))
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2024-06-06 15:21:49 +00:00
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(define-public xplanet
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(package
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(name "xplanet")
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(version "1.3.1")
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(source
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(origin
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(method url-fetch)
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|
(uri
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|
|
(string-append
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|
"mirror://sourceforge/xplanet/xplanet/"
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version "/xplanet-" version ".tar.gz"))
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|
(sha256
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|
(base32 "1rzc1alph03j67lrr66499zl0wqndiipmj99nqgvh9xzm1qdb023"))
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|
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(patches
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|
|
|
|
(search-patches
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|
"xplanet-1.3.1-cxx11-eof.patch"
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"xplanet-1.3.1-libdisplay_DisplayOutput.cpp.patch"
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"xplanet-1.3.1-libimage_gif.c.patch"
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"xplanet-1.3.1-xpUtil-Add2017LeapSecond.cpp.patch"))))
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(build-system gnu-build-system)
|
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|
(arguments
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|
|
(list
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|
|
#:configure-flags
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|
|
|
#~(list
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|
|
|
|
;; No NASA JPL cspice support.
|
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|
|
|
"--without-cspice"
|
|
|
|
|
(string-append "CPPFLAGS=-I" #$(this-package-input "netpbm")
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|
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"/include/netpbm"))))
|
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|
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(native-inputs
|
|
|
|
|
(list pkg-config))
|
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|
|
|
(inputs
|
|
|
|
|
(list freetype
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|
giflib
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|
libice
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|
|
libjpeg-turbo
|
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|
libpng
|
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libtiff
|
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libx11
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|
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|
libxscrnsaver
|
|
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netpbm
|
|
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|
pango
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|
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|
|
zlib))
|
|
|
|
|
(home-page "https://xplanet.sourceforge.net/")
|
|
|
|
|
(synopsis "Planetary body renderer")
|
|
|
|
|
(description
|
|
|
|
|
"Xplanet renders an image of a planet into an X window or file.
|
|
|
|
|
All of the major planets and most satellites can be drawn and different map
|
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|
|
projections are also supported, including azimuthal, hemisphere, Lambert,
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|
Mercator, Mollweide, Peters, polyconic, orthographic and rectangular.")
|
|
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(license license:gpl2+)))
|
2024-06-06 15:41:29 +00:00
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;;;
|
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|
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;;; Avoid adding new packages to the end of this file. To reduce the chances
|
|
|
|
|
;;; of a merge conflict, place them above in alphabetical order.
|
|
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|
|
;;;
|