Ricardo Wurmus
|
3bf7bdccee
|
gnu: Add r-milor.
* gnu/packages/bioconductor.scm (r-milor): New variable.
|
2022-08-31 23:06:45 +02:00 |
|
Efraim Flashner
|
de66e21580
|
gnu: r-keggrest: Update to 1.36.3.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.3.
|
2022-08-29 11:26:56 +03:00 |
|
Efraim Flashner
|
444c300e3e
|
gnu: r-genomeinfodb: Update to 1.32.3.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.3.
|
2022-08-28 15:47:58 +03:00 |
|
Efraim Flashner
|
10f0d0766c
|
gnu: r-iranges: Update to 2.30.1.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.1.
|
2022-08-28 13:29:05 +03:00 |
|
Ricardo Wurmus
|
add211b277
|
gnu: Add r-scry.
* gnu/packages/bioconductor.scm (r-scry): New variable.
|
2022-08-25 11:55:12 +02:00 |
|
Mădălin Ionel Patrașcu
|
4a6c6484df
|
gnu: Add r-organism-dplyr.
* gnu/packages/bioconductor.scm (r-organism-dplyr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2022-08-23 12:02:25 +02:00 |
|
Ricardo Wurmus
|
090663a7a5
|
gnu: Add r-bladderbatch.
* gnu/packages/bioconductor.scm (r-bladderbatch): New variable.
|
2022-08-23 11:45:59 +02:00 |
|
Mădălin Ionel Patrașcu
|
f6bcde85a6
|
gnu: Add r-pcaexplorer.
* gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
|
2022-08-23 11:43:20 +02:00 |
|
Mădălin Ionel Patrașcu
|
6c21c9fab1
|
gnu: Add r-parathyroidse.
* gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
|
2022-08-23 11:43:20 +02:00 |
|
Tobias Geerinckx-Rice
|
5a9c2abf9e
|
gnu: Remove ‘open source’ from package descriptions.
Also do some (trivial) editing where appropriate.
* gnu/packages/bioconductor.scm (r-anaquin, r-rcppnumerical)
[description]: Remove superfluous ‘open source’.
* gnu/packages/debian.scm (apt-mirror)[description]: Likewise.
Add @acronym{}. Drop obscure Ubuntu for famous Trisquel. Reorder.
* gnu/packages/documentation.scm (scrollkeeper)[description]:
Remove superfluous ‘open systems’. Keep ‘Open Source’ in standard name.
* gnu/packages/engineering.scm (freecad, cura-engine)[description]:
Remove superfluous ‘open source’ and excessive puffery.
* gnu/packages/firmware.scm (make-opensbi-package)
[synopsis]: Remove ‘Open Source’. Use @acronym{}.
[description]: Fix first sentence to follow guidelines. Use @acronym{}.
* gnu/packages/game-development.scm (ioquake3, recastnavigation):
[description]: Remove ‘open source’.
* gnu/packages/graphics.scm (skia)[description]: Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-s-sysdeps)[description]: Likewise.
* gnu/packages/machine-learning.scm (onnx)[description]: Likewise.
Use @acronym{}.
* gnu/packages/ocaml.scm (ocaml-cudf)[description]: Likewise.
|
2022-08-14 02:00:00 +02:00 |
|
Ricardo Wurmus
|
593327ef5b
|
gnu: r-bgx: Build without CPU tuning.
Fixes <https://issues.guix.gnu.org/57210>.
* gnu/packages/bioconductor.scm (r-bgx)[arguments]: Add phase
'do-not-tune-cflags-for-reproducibility to patch configure.ac.
[inputs]: Add boost.
[native-inputs]: Add autoconf and automake.
|
2022-08-14 20:43:01 +02:00 |
|
Ricardo Wurmus
|
8e87bbde13
|
gnu: r-lpsymphony: Build reproducibly.
* gnu/packages/bioconductor.scm (r-lpsymphony)[arguments]: Add build phase
'make-build-order-reproducible.
|
2022-08-14 20:43:00 +02:00 |
|
Ricardo Wurmus
|
17d3880de7
|
gnu: r-activepathways: Update to 1.1.1.
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.1.
|
2022-08-10 15:44:20 +02:00 |
|
Ricardo Wurmus
|
2efc787811
|
gnu: Add r-ciara.
* gnu/packages/bioconductor.scm (r-ciara): New variable.
|
2022-08-09 10:49:27 +02:00 |
|
Ricardo Wurmus
|
3b75131be6
|
gnu: Add r-biomartr.
* gnu/packages/bioconductor.scm (r-biomartr): New variable.
|
2022-08-05 15:43:09 +02:00 |
|
Mădălin Ionel Patrașcu
|
af207dd46d
|
gnu: Add r-infercnv.
* gnu/packages/bioconductor.scm (r-infercnv): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2022-08-01 23:53:23 +02:00 |
|
Mădălin Ionel Patrașcu
|
c6800aa31e
|
gnu: Add r-muscat.
* gnu/packages/bioconductor.scm (r-muscat): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2022-08-01 16:08:11 +02:00 |
|
Paul A. Patience
|
d1b60cb65b
|
gnu: Add comma after “i.e.” in descriptions.
* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after
“i.e.”.
* gnu/packages/code.scm (xenon)[description]: Same.
* gnu/packages/cran.scm (r-crosstalk)[description]: Same.
* gnu/packages/python-xyz.scm (python-radon)[description]: Same.
* gnu/packages/statistics.scm (r-logspline)[description]: Same.
* gnu/packages/suckless.scm (tabbed)[description]: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
2022-08-01 14:08:08 +02:00 |
|
Ricardo Wurmus
|
9238ba5874
|
gnu: r-affycompatible: Build reproducibly.
* gnu/packages/bioconductor.scm (r-affycompatible)[arguments]: Sort XML
elements before generating R code from them.
|
2022-07-15 00:07:42 +02:00 |
|
Ricardo Wurmus
|
602cf66c79
|
gnu: Add r-dittoseq.
* gnu/packages/bioconductor.scm (r-dittoseq): New variable.
|
2022-07-04 13:48:58 +02:00 |
|
Ricardo Wurmus
|
3bb39fc370
|
gnu: r-tcgabiolinks: Update to 2.24.3.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
af06365a3e
|
gnu: r-bionetstat: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
26981da96b
|
gnu: r-bgeedb: Update to 2.22.3.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
5f03154c15
|
gnu: r-ggbio: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
11f30bfa3d
|
gnu: r-rsubread: Update to 2.10.4.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
0a5a06ed24
|
gnu: r-biosigner: Update to 1.24.2.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
fbb6489abd
|
gnu: r-ropls: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
4aabb20226
|
gnu: r-genomicscores: Update to 2.8.2.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
b7a5534e61
|
gnu: r-clusterprofiler: Update to 4.4.4.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
a17b7aabfd
|
gnu: r-batchelor: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
7ff0669cee
|
gnu: r-matrixgenerics: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
|
2022-07-02 23:56:10 +02:00 |
|
Ricardo Wurmus
|
605eda07df
|
gnu: r-zellkonverter: Update to 1.6.3.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
|
2022-07-02 23:56:09 +02:00 |
|
Ricardo Wurmus
|
febec55f57
|
gnu: r-simplifyenrichment: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
|
2022-07-02 23:56:09 +02:00 |
|
Ricardo Wurmus
|
c4113d3035
|
gnu: r-rtracklayer: Update to 1.56.1.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
|
2022-07-02 23:56:09 +02:00 |
|
Ricardo Wurmus
|
5298b57d56
|
gnu: r-organismdbi: Update to 1.38.1.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
|
2022-07-02 23:56:09 +02:00 |
|
Ricardo Wurmus
|
4e6026031a
|
gnu: r-limma: Update to 3.52.2.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
|
2022-07-02 23:56:09 +02:00 |
|
Ricardo Wurmus
|
103d4d918f
|
gnu: r-ensembldb: Update to 2.20.2.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
|
2022-07-02 23:56:09 +02:00 |
|
Ricardo Wurmus
|
01790a6cd6
|
gnu: r-restfulr: Update to 0.0.15.
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
|
2022-07-02 23:56:04 +02:00 |
|
Mădălin Ionel Patrașcu
|
ec23d7caa8
|
gnu: Add r-antiprofiles.
* gnu/packages/bioconductor.scm (r-antiprofiles): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2022-07-01 10:28:22 +02:00 |
|
Mădălin Ionel Patrașcu
|
3109d4a30e
|
gnu: Add r-annmap.
* gnu/packages/bioconductor.scm (r-annmap): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2022-07-01 10:28:21 +02:00 |
|
Mădălin Ionel Patrașcu
|
f004033b47
|
gnu: Add r-anf.
* gnu/packages/bioconductor.scm (r-anf): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2022-07-01 10:28:21 +02:00 |
|
Mădălin Ionel Patrașcu
|
4c294ae7fb
|
gnu: Add r-anaquin.
* gnu/packages/bioconductor.scm (r-anaquin): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
|
2022-07-01 10:28:21 +02:00 |
|
Mădălin Ionel Patrașcu
|
c6d792f34c
|
gnu: Add r-amaretto.
* gnu/packages/bioconductor.scm (r-amaretto): New variable.
|
2022-06-30 15:35:27 +02:00 |
|
Mădălin Ionel Patrașcu
|
dd74da6190
|
gnu: Add r-amountain.
* gnu/packages/bioconductor.scm (r-amountain): New variable.
|
2022-06-30 15:29:45 +02:00 |
|
Ricardo Wurmus
|
6e333213d3
|
gnu: r-metap: Update to 1.8.
* gnu/packages/bioconductor.scm (r-metap): Update to 1.8.
[propagated-inputs]: Add r-mathjaxr and r-qqconf.
|
2022-06-30 15:17:58 +02:00 |
|
Ricardo Wurmus
|
fce6aeba7e
|
gnu: r-nbpseq: Update to 0.3.1.
* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
|
2022-06-13 14:21:46 +02:00 |
|
Ricardo Wurmus
|
37378829bc
|
gnu: r-restfulr: Update to 0.0.14.
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
|
2022-06-13 14:21:42 +02:00 |
|
Ricardo Wurmus
|
0006a9a83a
|
gnu: Add r-deconvr.
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
|
2022-06-12 22:51:23 +02:00 |
|
Ricardo Wurmus
|
541823b318
|
gnu: r-hdf5array: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
|
2022-06-12 11:16:30 +02:00 |
|
Ricardo Wurmus
|
a12ec47cbd
|
gnu: r-universalmotif: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
|
2022-06-12 11:16:30 +02:00 |
|