4e1c6f4998
gnu: Add r-basics.
...
* gnu/packages/bioconductor.scm (r-basics): New variable.
Change-Id: I6f0afeeb41f667d780707af65034d5ba978f0d4a
2023-11-13 15:00:00 +01:00
47a4195649
gnu: Add r-basic4cseq.
...
* gnu/packages/bioconductor.scm (r-basic4cseq): New variable.
Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3
2023-11-13 14:59:26 +01:00
459d9ebd2a
gnu: Add r-bsgenome-ecoli-ncbi-20080805.
...
* gnu/packages/bioconductor.scm (r-bsgenome-ecoli-ncbi-20080805):
New variable.
Change-Id: Ic42527fa334be4c23ebe2e19461571d899db77ca
2023-11-13 14:57:00 +01:00
628926de80
gnu: Add r-bags.
...
* gnu/packages/bioconductor.scm (r-bags): New variable.
Change-Id: If0c533898a5e05809f23e7e8b52fc3d5fbffc8fb
2023-11-13 14:55:55 +01:00
d0251c23b9
gnu: Add r-breastcancervdx.
...
* gnu/packages/bioconductor.scm (r-breastcancervdx): New variable.
Change-Id: Ia3437ab67a00ce23c61553ff15f940b8a3ee9c8a
2023-11-13 14:55:55 +01:00
951a1433f3
gnu: Add r-illuminahumanmethylationepicmanifest.
...
* gnu/packages/bioinformatics.scm (r-illuminahumanmethylationepicmanifest): New variable.
Change-Id: I9635033ed5e7e44ecfaff76cd002379582900686
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-13 14:46:51 +01:00
77386bdbfe
gnu: openrgb: Fix up chmod invocations inside udev rules.
...
* gnu/packages/hardware.scm (openrgb)[arguments]<#:phases>[patch-chmod]: New
phase.
Change-Id: Ib82a8cc42a896aaf9dc7ea0ff36a3c259f9a26af
2023-11-12 23:23:20 +01:00
978f4a9dc4
gnu: Add ngtcp2.
...
* gnu/packages/networking.scm (ngtcp2): New variable.
Change-Id: Id8fcedf0f2843fa37983cecb98fb76a5ccdcdc22
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2023-11-12 16:43:48 +01:00
e35b7c5386
gnu: ruby: Fix cross-compilation.
...
* gnu/packages/ruby.scm (ruby-2.6,ruby-2.7): Fix cross-compilation.
[native-inputs]: When cross compiling, add this-package.
[arguments]<#:configure-flags>: When cross compiling, add LDFLAGS.
Change-Id: Iba6665ba3b1b3d5b3a9b6830a01f0f3284e35efb
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-12 14:14:56 +00:00
34d57ba3e3
gnu: lighttpd: Update to 1.4.73.
...
* gnu/packages/web.scm (lighttpd): Update to 1.4.73.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-12 14:14:22 +00:00
b035e079fa
gnu: nar-herder: Update to 0-22.bf539aa.
...
* gnu/packages/package-management.scm (nar-herder): Update to 0-22.bf539aa.
Change-Id: I00e1417d8c38e4d7ce73f9acae082d562bff58f7
2023-11-12 14:12:27 +00:00
7d32f73df5
gnu: guix-data-service: Update to 0.0.1-43.37a07c2.
...
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-43.37a07c2.
Change-Id: I1149d8409444c5f1ca1927bd1e21cc541f21e906
2023-11-12 14:12:06 +00:00
7001e85b75
gnu: guile-prometheus: Update to 0-6.4aaf902.
...
* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-6.4aaf902.
Change-Id: I98f72712d63ad5f14678bd6979d8bc4cf1f52e99
2023-11-12 14:06:18 +00:00
09b19cf8da
gnu: emacs-dracula-theme: Update to 1.8.2.
...
* gnu/packages/emacs-xyz.scm (emacs-dracula-theme): Update to 1.8.2.
Change-Id: Ie2cc953d90e6ee46f1012c90af446c42921a2b4e
2023-11-12 11:56:28 +01:00
5c12e5b49c
gnu: emacs-danneskjold-theme: Improve package style.
...
* gnu/packages/emacs-xyz.scm (emacs-danneskjold-theme)[arguments]: Use G-expressions.
Change-Id: I5156938633f9c6e9de2c41b9bcd72c3f92d7f842
2023-11-12 11:56:28 +01:00
2e69b4c41d
gnu: emacs-danneskjold-theme: Update to 20231110.0.
...
* gnu/packages/emacs-xyz.scm (emacs-danneskjold-theme): Update to 20231110.0.
Change-Id: I6f2f2f25efd57437b46a1e1fcd1141c57d33c015
2023-11-12 11:56:28 +01:00
1d84150145
gnu: emacs-dream-theme: Update to 1.0.
...
* gnu/packages/emacs-xyz.scm (emacs-dream-theme): Update to 1.0.
Change-Id: I2189ce653a64517ea299b6d4348b16d9f2d2bb52
2023-11-12 11:56:22 +01:00
0527b542c9
gnu: Add lld-17.
...
* gnu/packages/llvm.scm (lld-17): New variable.
Change-Id: Idbb84efc1c749179dfdb874390bfc1caf4e753d3
2023-11-12 08:49:46 +02:00
80c5cf9554
gnu: Add clang-toolchain-17.
...
* gnu/packages/llvm.scm (clang-toolchain-17): New variable.
Change-Id: Iefec981c84249db0d1c740c156835dfea9030f47
2023-11-12 08:49:46 +02:00
5cb71306eb
gnu: Add libomp-17.
...
* gnu/packages/llvm.scm (libomp-17): New variable.
Change-Id: I6ad09d8feff0053dfc811a741e00445dfecb311f
2023-11-12 08:49:46 +02:00
8d5b31394b
gnu: Add clang-17.
...
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Include test runner in
CMakeLists.txt when version >= 17.
(clang-17): New variable.
Change-Id: Ia3cd8013d497b72522e95f6face5975bf79f93b3
2023-11-12 08:49:46 +02:00
b7b945c32f
gnu: Add clang-runtime-17.
...
* gnu/packages/llvm.scm (clang-runtime-17): New variable.
Change-Id: I675475e9f4914843283966f5c622cdb214d11e34
2023-11-12 08:49:46 +02:00
6ccc8e1e16
gnu: Add llvm-17.
...
* gnu/packages/llvm.scm (llvm-17): New variable.
* gnu/packages/patches/clang-17.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: I8cdda0737b1137cf86887fb5b854e71977a88b6b
2023-11-12 08:49:46 +02:00
a15312aa03
gnu: Add lld-16.
...
* gnu/packages/llvm.scm (lld-16): New variable.
Change-Id: If34c0785531bc3603a56f18c18a8e4318cabc493
2023-11-12 08:49:45 +02:00
f7bd7a24cb
gnu: Add clang-toolchain-16.
...
* gnu/packages/llvm.scm (clang-toolchain-16): New variable.
Change-Id: I4bc7820b249ab93ff8b7143901c8e4220b7b8b5b
2023-11-12 08:49:45 +02:00
5fb50c6c2e
gnu: Add libomp-16.
...
* gnu/packages/llvm.scm (libomp-16): New variable.
Change-Id: I2a396f7c7a4c0e35a15ed315c291b4298c0ee967
2023-11-12 08:49:45 +02:00
c84119fb2a
gnu: Add clang-16.
...
* gnu/packages/llvm.scm (clang-16): New variable.
Change-Id: I0e62bced33d2ff5a3064917d4e95004d43dc56fb
2023-11-12 08:49:45 +02:00
abdd1949f4
gnu: Add clang-runtime-16.
...
* gnu/packages/llvm.scm (clang-runtime-16): New variable.
Change-Id: I8812e9e72b711505f7575cc3d62a9a009d25f641
2023-11-12 08:49:45 +02:00
9638e007a7
gnu: Add llvm-16.
...
* gnu/packages/llvm.scm (llvm-16): New variable.
* gnu/packages/patches/clang-16.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: I27738152ca95aeeef8d8b7150fdf14825b6b0b4d
2023-11-12 08:49:45 +02:00
15d90e7bfb
gnu: clang-runtime-from-llvm: Add phase for LLVM monorepo.
...
* gnu/packages/llvm.scm (clang-runtime-from-llvm)[arguments]<#:phases>: Change
directory to "compiler-rt" for LLVM monorepo.
(clang-runtime-15,clang-runtime-14): Adjust accordingly.
Change-Id: I6a77c9d106439e4794b8531e2160e2c9ce63d86e
2023-11-12 08:49:45 +02:00
f7411e283a
gnu: clang-runtime-from-llvm: Adjust inputs for version 15 or later.
...
* gnu/packages/llvm.scm (clang-runtime-from-llvm)[native-inputs]: Add gcc-12
when version >= 15.
[inputs]: Add libffi when version >= 15.
(clang-runtime-15)[native-inputs,inputs]: Remove fields.
Change-Id: I4b385b937edbb7a2840b998b6dd3e31a17cb556f
2023-11-12 08:49:45 +02:00
af6105afc6
gnu: emacs-helm-company: Improve package style.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-company)[arguments]: Use
G-expressions.
[synopsis, description]: Use proper capitalization.
Change-Id: I39f6c8accd31ae9cde94d3822e2be1d5a41fc6a6
2023-11-11 11:22:39 +01:00
23332c83a2
gnu: emacs-helm-company: Update to 0.2.7.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-company): Update to 0.2.7.
Change-Id: I8501312580308c9ed016c5b7ebf2fe9f7964823d
2023-11-11 11:22:02 +01:00
81ade34415
gnu: emacs-irony-mode: Update to 1.6.1.
...
* gnu/packages/emacs-xyz.scm (emacs-irony-mode): Update to 1.6.1.
Change-Id: I303b26b3f4891a6ef2a9f8c2d55456c7a555f06f
2023-11-11 11:20:58 +01:00
ee00dd9a50
gnu: emacs-subed: Update to 1.2.7.
...
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.7.
Change-Id: Ib64097dceaf858d847a0b93da6d71baaf04fafe8
2023-11-11 11:19:25 +01:00
2a28bd0fd7
gnu: emacs-suneater-theme: Update to 2.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-suneater-theme): Update to 2.4.0.
Change-Id: I44b88f1956756e03fb1e4fee4c19ff37bf6e75c3
2023-11-11 11:18:37 +01:00
8e813f4866
gnu: emacs-citar: Fix build.
...
* gnu/packages/emacs-xyz.scm (emacs-citar)[arguments]<#:phases>: Remove
VALIDATE-COMPILED-AUTOLOADS phase.
Change-Id: I1bc26caf9b208fca1a33654d81d508f0a37375f9
2023-11-11 11:10:39 +01:00
61c527227c
gnu: Remove m2-planet-1.9.0.
...
* gnu/packages/mes.scm (m2-planet-1.9.0): Remove.
Change-Id: Ib23ff2eee63b5bf1a0b13968f871ad93fda4d537
2023-11-11 07:34:57 +01:00
552e15792b
gnu: mes: Update to 0.25.
...
* gnu/packages/mes.scm (mes): Update to 0.25.
[supported-systems]: Add aarch64-linux and riscv64-linux.
[native-inputs]: For aarch64-linux, use arm-linux-gnueabihf compiler.
Update to latest m2-planet (1.11.0).
Change-Id: I8c4c46b1a0e30cdb4545186dfa93625a400bac0f
2023-11-11 07:34:57 +01:00
952d0951da
gnu: mescc-tools: Support riscv64-linux build.
...
* gnu/packages/mes.scm (mescc-tools) [arguments]: Update to gexps. Add
patch-Kaem/test.sh phase to fix shebang for riscv64-linux/qemu build.
Change-Id: Id61c04deb08138481f7290607488465710969e8d
2023-11-11 07:34:54 +01:00
42316acc7e
gnu: capypdf: Update to 0.6.0.
...
* gnu/packages/pdf.scm (capypdf): Update to 0.6.0.
Change-Id: I609a349fe5b6b30bb51fc413e85da00ebaedb5d3
2023-11-11 06:47:17 +01:00
ddf920e371
gnu: emacs-evil-anzu: Update to 0.03-0.d1e98ee.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-anzu): Update to 0.03-0.d1e98ee.
[source, home-page]: Use “https://github.com/emacsorphanage/evil-anzu” .
Change-Id: Iff78e22c6a3c0c90e1dc4c24700bfc9e499dd132
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-11-11 06:47:17 +01:00
2a638e0bbc
gnu: lowdown: Update to 1.1.0.
...
* gnu/packages/markup.scm (lowdown): Update to 1.1.0.
[source]: Use upstream tarball and switch to url-fetch.
[arguments]<phases>: Install with "make install install_libs".
Change-Id: I2268c587be2fddb43fdf9ae957b6e5344e5f2984
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-11-11 08:36:31 +08:00
f39cac1d0c
gnu: icewm: Update to 3.4.4
...
* gnu/packages/wm.scm (icewm): Update to 3.4.4
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
Change-Id: Ibb4c3567c003f59d2fa85140fdbab507d7efd77d
2023-11-11 08:09:11 +08:00
bb3ab24a29
gnu: ublock-origin: Update to 1.53.2.
...
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.53.2.
(ublock-main-assets): Update to d93605b8584df8cd47bcc91b3d932feecd9e3a2a.
(ublock-prod-assets): Update to 1d3df32ef6672763f44b27a95fd5cb3b5770d5e2.
Change-Id: Ifd853835137ad7be5a0322d6a8e438f23e7ecb09
2023-11-10 12:04:12 +01:00
857c199612
gnu: sdrangel: Update to 7.17.0.
...
* gnu/packages/radio.scm (sdrangel): Update to 7.17.0.
Change-Id: I1ecd6e79c9622cba9160ece0814cdc370dd045d7
2023-11-10 10:43:07 +01:00
d8002a41b9
gnu: multimon-ng: Update to 1.3.0.
...
* gnu/packages/radio.scm (multimon-ng): Update to 1.3.0.
Change-Id: Ibd5136b36f7bc911e47c6b3d1a6f6addc00aed9c
2023-11-10 10:26:46 +01:00
5b2903a56e
gnu: rtl-sdr: Update to 2.0.1.
...
* gnu/packages/radio.scm (rtl-sdr): Update to 2.0.1.
Change-Id: I6331ca544394ff413f123747f80c83efa7012515
2023-11-10 10:10:15 +01:00
71d54f3ac4
gnu: josm: Update to 18822.
...
* gnu/packages/geo.scm (josm): Update to 18822.
[inputs]: Use new json implementation.
[arguments]: Use openjdk11 to prevent warning at startup.
Change-Id: I393e0ed765d1d0da7870595d2eccefae17836eb9
2023-11-09 19:09:08 +01:00
dd631a891c
gnu: Add java-parsson.
...
* gnu/packages/java.scm (java-parsson): New variable.
Change-Id: Ie564924329e4e0a866e6ed5fe9135c841fb66ae8
2023-11-09 19:08:59 +01:00
14e01e313d
gnu: Add java-jakarta-json.
...
* gnu/packages/java.scm (java-jakarta-json): New variable.
Change-Id: I2c123710f9d31bf71e8fb86ff0d336b6fcfa9674
2023-11-09 19:08:51 +01:00
5392d9db46
gnu: openjdk9: Install default certificates.
...
* gnu/packages/java.scm (openjdk9)[arguments]: Add a phase to install
certificates from nss-certs to the expected location.
(openjdk10, openjdk11): Adapt to also install the certificates.
Change-Id: I6ef626324386419e84a9c0eace5a278ca11c573c
2023-11-09 19:08:24 +01:00
42bec70a91
gnu: cl-slynk: Update to 1.0.43-9.9c43bf6.
...
* gnu/packages/lisp-xyz.scm (sbcl-slynk): Update to 1.0.43-9.9c43bf6.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: I84ff141b7eefff470f72493d02f2cc24f02db7cf
2023-11-09 14:56:45 +01:00
9b03e84e4e
gnu: emacs-sly: Update to 1.0.43-9.9c43bf6.
...
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 1.0.43-9.9c43bf6.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:55:45 +01:00
fd48bc959b
gnu: cl-graph: Update to 0.10.2-2.c617de3.
...
* gnu/packages/lisp-xyz.scm (cl-graph): Update to 0.10.2-2.c617de3.
[source]: Update URL as maintainer and owner of repository was changed.
Change-Id: Ice484f098d52b93baebc9596f0f902b1b30ae797
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:37:35 +01:00
3b627af0e1
gnu: cl-trivial-backtrace: Update to 1.1.0-2.7f90b4a.
...
* gnu/packages/lisp-xyz.scm (cl-trivial-backtrace): Update to 1.1.0-2.7f90b4a.
[source]: Update URL as maintainer and owner of repository was changed.
Change-Id: Ibbc0a1707b71d1ba2851c52f5a5ad744ca25dc45
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:36:33 +01:00
8fd37af45a
gnu: cl-metabang-bind: Update to 0.8.0-2.0819642.
...
* gnu/packages/lisp-xyz.scm (sbcl-metabang-bind): Update to 0.8.0-2.0819642.
[source]: Update URL as maintainer and owner of repository was changed.
Change-Id: I5fdde9e53e0b7e9cd585ebda85eebe3c29b1d841
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:35:21 +01:00
a251c78907
gnu: cl-metatilities-base: Update to 0.6.6-2.ef04337.
...
* gnu/packages/lisp-xyz.scm (sbcl-metatilities-base): Update to 0.6.6-2.ef04337.
[source]: Update URL as maintainer and owner of repository was changed.
Change-Id: I98274d5dc74244406e2e25de8d83379bdb110b8f
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:34:30 +01:00
1b275e8192
gnu: cl-containers: Update to 0.12.1-4.781ebfe.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-containers): Update to 0.12.1-4.781ebfe.
[source]: Update URL as maintainer and owner of repository was changed.
Change-Id: I7db432378aeb03cd3ac0336efc5607522aced06c
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:32:24 +01:00
439e59418c
gnu: cl-dynamic-classes: Update to 1.0.2-0.ebd7405.
...
* gnu/packages/lisp-xyz.scm (sbcl-dynamic-classes): 1.0.2-0.ebd7405.
[source]: Update URL as maintainer and owner of repository was changed.
Change-Id: I29600432399b2440cfe81cbb04a029e09b5b98b0
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:28:52 +01:00
885bf3b10d
gnu: cl-mathstats: Update source URL.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-mathstats):
[source]: Update URL as maintainer and owner of repository was changed.
[home-page]: As above.
Change-Id: Ib53afc5fac19e79837ff84e1f3b328c31027abbe
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:24:31 +01:00
67c1d628b3
gnu: cl-trivial-timeout: Enable tests.
...
* gnu/packages/lisp-xyz.scm (sbcl-trivial-timeout): Enable tests.
Change-Id: I4428e06362a0569451a871faea2a92dd4c56ac3f
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:20:27 +01:00
9e7939d180
gnu: cl-trivial-timeout: Update to 0.1.5-2.e70d9b4.
...
* gnu/packages/lisp-xyz.scm (sbcl-trivial-timeout): Update to 0.1.5-2.e70d9b4.
[source]: Update URL as maintainer and owner of repository was changed.
[home-page]: As above.
Change-Id: Ia7251a2caed1347d4293975c2aefa8bea7c0dc7e
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:19:49 +01:00
a2fd34ec95
gnu: cl-metacopy: Add ECL build.
...
* gnu/packages/lisp-xyz.scm (ecl-metacopy): New variable.
Change-Id: I44dab70d3f37b2266aac511eade9282c43df8e00
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:16:43 +01:00
12265d6168
gnu: cl-metacopy: Update to 0.2.0-2.df7856f.
...
* gnu/packages/lisp-xyz.scm (cl-metacopy): Update to 0.2.0-2.df7856f.
[source]: Update URL as maintainer and owner of repository was changed.
[home-page]: As above.
Change-Id: I3c745dcc6355f98c9d11c908d010447dd8c6d295
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:16:04 +01:00
c3d2e33b14
gnu: cl-markdown: Remove package labels.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-markdown)[inputs]: Remove package labels.
Change-Id: I0ff5b8dab480d00904fa6345ab99e44d8e47de2b
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:10:45 +01:00
04cc3e9204
gnu: cl-markdown: Enable tests.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-markdown): Enable tests.
[source]: Update URL as maintainer and owner of repository was changed.
[native-inputs]: Add sbcl-lift and sbcl-trivial-shell.
(ecl-cl-markdown): Keep tests disabled.
Change-Id: Ib27a650ca25d1e90c407411f61b3413443db1f15
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:08:20 +01:00
109aaaecc4
gnu: cl-markdown: Update to 0.10.6-0.3788802.
...
* gnu/packages/lisp-xyz.scm (sbcl-markdown): Update to 0.10.6-0.3788802.
Change-Id: I98b67f77db2f0abdf61af8b60255acb3b0297c78
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:06:56 +01:00
abdbe5743e
gnu: cl-lift: Update to 1.7.1-3.a794184.
...
* gnu/packages/lisp-check.scm (sbcl-lift): Update to 1.7.1-3.a794184.
[source]: Update URL as maintainer and owner of repository was changed.
Change-Id: I068bbea25422c89810919499e96655cd9e5223ad
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 14:01:28 +01:00
234be44685
gnu: cl-trivial-shell: Patch shell path.
...
* gnu/packages/lisp-xyz.scm (sbcl-trivial-shell):
[source]: Update URL as maintainer and owner of repository was changed.
[arguments]: Add 'fix-paths phase to patch location of the shell.
Change-Id: Ib3ac95013d3cb5240eb0261ad53f484b14d8f76f
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-11-09 13:56:54 +01:00
960d7ac5a5
gnu: emacs-bbdb: Add emacs-notmuch to inputs.
...
This is a follow-up to commit 02f9a4150a
2023-11-09 20:31:24 +08:00
afce101047
gnu: emacs-debbugs: Fix build.
...
The current release already contains the changes.
* gnu/packages/emacs-xyz.scm (emacs-debbugs)[source]: Remove patch.
* gnu/packages/patches/emacs-debbugs-keep-patch-subject.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
Change-Id: Id51e6c9dec138721d288be28cd1c5e954d3228a9
2023-11-09 20:22:43 +08:00
fb65b2c243
gnu: guix: Update to a60ff46.
...
* gnu/packages/package-management.scm (guix): Update to a60ff46
2023-11-09 10:42:55 +02:00
a60ff4611a
gnu: tor: Update to 0.4.8.8 [fixes TROVE-2023-004].
...
* gnu/packages/tor.scm (tor): Update to 0.4.8.8.
Fixes TROVE-2023-004 which affects tor relays. See
https://gitlab.torproject.org/tpo/core/tor/-/issues/40880
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-11-09 08:45:09 +02:00
b0bfddd7f9
gnu: wsjtx: Only build html documentation on supported systems.
...
* gnu/packages/radio.scm (wsjtx)[arguments]: Add configure-flag to skip
html documentation on systems where ruby-asciidoctor isn't supported.
[native-inputs]: Don't build with ruby-asciidoctor on systems where it
isn't supported.
Change-Id: I73436f887933e6b37033c8ba3ff32ba125a797f8
2023-11-08 22:12:42 +02:00
e7d61dfe57
gnu: nanomsg: Don't build html documentation.
...
* gnu/packages/networking.scm (nanomsg)[outputs]: Remove 'doc' output.
[arguments]: Remove phase moving html to doc output.
[native-inputs]: Remove ruby-asciidoctor, pkg-config.
Change-Id: Ie44d250572e652f14981f0d0edfa2de7ae5e62c0
2023-11-08 21:58:53 +02:00
ae9fb02bb5
gnu: drbd-utils: Enable building on more architectures.
...
* gnu/packages/cluster.scm (drbd-utils)[arguments]: Only generate the
man-pages on systems which support ruby-asciidoctor.
[native-inputs]: Only include docbook-xml, docbook-xml-4.4, docbook-xsl,
libxml2, libxslt, ruby-asciidoctor on systems which support
ruby-asciidoctor.
Change-Id: I7d45a1fbcb87d3847dfd49b4efdb80961f1f6a22
2023-11-08 21:42:45 +02:00
da6486010a
gnu: ccache: Enable building on more architectures.
...
* gnu/packages/ccache.scm (ccache)[native-inputs]: Only build with
ruby-asciidoctor on platforms which have support for it.
Change-Id: Ibb944fb6f844e3ededadd5277e20dd9ac21eb3eb
2023-11-08 21:26:51 +02:00
00fd689532
gnu: dezyne: Update to 2.17.8.
...
* gnu/packages/dezyne.scm (dezyne): Update to 2.17.8.
Change-Id: I0982bb987986e59ac5e5d5d874147ec684a27101
2023-11-08 16:48:51 +01:00
9b3ae79ebd
gnu: emacs-yeetube: Update to 2.0.7.
...
* gnu/packages/emacs-xyz.scm (emacs-yeetube): Update to 2.0.7.
Change-Id: Ia54505768f324c8def0291b927057b2677e6a446
2023-11-08 15:22:12 +01:00
c7b9fd2d41
gnu: emacs-projectile: Update to 2.8.0.
...
* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.8.0.
Change-Id: Ie3281d5066a75f89bb89c93b7bcd3827b2752e1e
2023-11-08 15:22:12 +01:00
e895d67adf
gnu: emacs-package-lint: Improve package style.
...
* gnu/packages/emacs-xyz.scm (emacs-package-lint)[arguments]: Use a G-expression.
Change-Id: I24eb401e9b9175911ce15d0ef23083e8a25918c3
2023-11-08 15:22:11 +01:00
1dc1b2a412
gnu: emacs-package-lint: Update to 0.20.
...
* gnu/packages/emacs-xyz.scm (emacs-package-lint): Update to 0.20.
[propagated-inputs]: Add EMACS-COMPAT.
Change-Id: Ifa13dfc5c363c7ba67375b9975c944327ed39875
2023-11-08 15:22:09 +01:00
d58ea96f23
gnu: emacs-osm: Update to 0.14.
...
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 0.14.
Change-Id: Idb0a552459510e1f2fa4ad5ff71e59bc3d90a02e
2023-11-08 15:20:55 +01:00
bbc8a12524
gnu: emacs-org-web-tools: Improve package style.
...
* gnu/packages/emacs-xyz.scm (emacs-org-web-tools)[arguments]: Use
G-expressions. Remove trailing #T from phases.
[description]: Use proper quoting and name for Org project.
Change-Id: Ifdec8ab61fc44f2a73da87a1fd042140e691e5ae
2023-11-08 15:20:54 +01:00
9fef2524b1
gnu: emacs-org-web-tools: Update to 1.2.
...
* gnu/packages/emacs-xyz.scm (emacs-org-web-tools): Update to 1.2.
[propagated-inputs]: Add EMACS-COMPAT.
Change-Id: Ie2efc8472dc2e6d6fd380b280fac571af9b5dc3a
2023-11-08 15:20:54 +01:00
1721c1fe51
gnu: emacs-org-ql: Update to 0.7.3.
...
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.7.3.
Change-Id: I4bedacdab4947ff6e0e751cb8c2cffecc31052e3
2023-11-08 15:20:54 +01:00
95a60aa413
gnu: emacs-org: Update to 9.6.11.
...
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.6.11.
Change-Id: I159bbb49607631ca9a25fc4dc1bf1bd43a8dc932
2023-11-08 15:20:54 +01:00
b7b2cafa24
gnu: emacs-olivetti: Update to 2.0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-olivetti): Update to 2.0.5.
Change-Id: I016382b6be6f268a1f6f34097e976d00bbf5eec0
2023-11-08 15:20:53 +01:00
a43c6fbd16
gnu: emacs-jarchive: Update to 0.11.0.
...
* gnu/packages/emacs-xyz.scm (emacs-jarchive): Update to 0.11.0.
Change-Id: Ia0b5b5b48cda6127631163980f81979ce77dd980
2023-11-08 15:20:53 +01:00
ffa08b3e5e
gnu: emacs-git-modes: Update to 1.4.2.
...
* gnu/packages/emacs-xyz.scm (emacs-git-modes): Update to 1.4.2.
Change-Id: I3d79b4b5a514e133b64c688cf77aee423fed2245
2023-11-08 15:20:53 +01:00
504b85237e
gnu: emacs-fountain-mode: Update to 3.7.1.
...
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.7.1.
Change-Id: I2a7a1c65e517eb261cf272f2e895d5242801ff5e
2023-11-08 15:20:52 +01:00
37f3ade8a9
gnu: emacs-expand-region: Update to 1.0.0.
...
* gnu/packages/emacs-xyz.scm (emacs-expand-region): Update to 1.0.0.
Change-Id: I04ebab9d22dc7b43590839fa467d05a6f7670c45
2023-11-08 15:20:52 +01:00
38b345006b
gnu: emacs-elfeed-protocol: Update to 0.9.1.
...
* gnu/packages/emacs-xyz.scm (emacs-elfeed-protocol): Update to 0.9.1.
Change-Id: Iaac2a6bd8669cb37aee85087ab56b40391fff072
2023-11-08 15:20:52 +01:00
d5d43ec3e2
gnu: emacs-eldev: Update to 1.7.
...
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.7.
[arguments]<#:phases>: Re-instate one previously failing test.
Change-Id: Ie0cef80184f0d117d50eef20512b4aaf22d31ff4
2023-11-08 15:20:52 +01:00
2e5b62d964
gnu: emacs-ef-themes: Update to 1.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-ef-themes): Update to 1.4.0.
Change-Id: I29cae75d5866091c242302581ae5fbf430ccc17d
2023-11-08 15:20:51 +01:00
1e50e65568
gnu: emacs-ebuild-mode: Update to 1.69.
...
* gnu/packages/emacs-xyz.scm (emacs-ebuild-mode): Update to 1.69.
Change-Id: I5d06c0e8a660da18bb152e8745e3f6901fe8de5a
2023-11-08 15:20:51 +01:00
f6fbe8ec4f
gnu: emacs-ebib: Update to 2.39.4.
...
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.39.4.
Change-Id: I8486a18bf65ecc7c5050b1c6136026072eda3f47
2023-11-08 15:20:51 +01:00
30586802de
gnu: emacs-citar: Update to 1.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 1.4.0.
Change-Id: I98e0a753c496e0d67ad864ebc8fd0833926d3347
2023-11-08 15:20:51 +01:00
3bd8e8d001
gnu: emacs-base16-theme: Update to 3.2.
...
* gnu/packages/emacs-xyz.scm (emacs-base16-theme): Update to 3.2.
Change-Id: I72824ccb9c17584a2f05ef430ef74219aaa530c7
2023-11-08 15:20:50 +01:00
f6b542fbab
gnu: emacs-ivy-hydra: Update to 0.14.2.
...
* gnu/packages/emacs-xyz.scm (emacs-ivy-hydra): Update to 0.14.2.
Change-Id: I1ce77975a479b885f5a931efd3c8b0db52c39ce5
2023-11-08 15:20:50 +01:00
d2ae12d0a1
gnu: emacs-ivy-avy: Update to 0.14.2.
...
* gnu/packages/emacs-xyz.scm (emacs-ivy-avy): Update to 0.14.2.
Change-Id: If3818e32fa9db5d796400a56ffc0465ff4665c43
2023-11-08 15:20:50 +01:00
15c591dc7f
gnu: emacs-buffer-env: Update to 0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-buffer-env): Update to 0.5.
Change-Id: I907e5c6e0ce618aefdb2b16d9fef16e60b797ede
2023-11-08 15:20:49 +01:00
fa8d1a909c
gnu: emacs-url-http-ntlm: Update to 2.0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-url-http-ntlm): Update to 2.0.5.
Change-Id: I16c695c072c5c473224c7014fc192de278708f37
2023-11-08 15:20:49 +01:00
55de82d1b3
gnu: emacs-tramp: Update to 2.6.1.4.
...
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.6.1.4.
Change-Id: I59cd68fedca7241c6d9330a03fb3b2e997299bce
2023-11-08 15:20:49 +01:00
77b8f58ec0
gnu: emacs-notmuch-indicator: Update to 1.1.0.
...
* gnu/packages/emacs-xyz.scm (emacs-notmuch-indicator): Update to 1.1.0.
Change-Id: I1b748d4d63adca3080a9169e0d898a7c6ff0a321
2023-11-08 15:20:49 +01:00
dddd1d3557
gnu: emacs-zones: Update to 2023.6.11.
...
* gnu/packages/emacs-xyz.scm (emacs-zones): Update to 2023.6.11.
Change-Id: I80ac39d4ac38128d466da9984f89f5b3144eff18
2023-11-08 15:20:48 +01:00
20fa882f6f
gnu: emacs-swiper: Update to 0.14.2.
...
* gnu/packages/emacs-xyz.scm (emacs-swiper): Update to 0.14.2.
Change-Id: I58f3c05c455a5f4e5c770f84eec1bf63b1025f85
2023-11-08 15:20:48 +01:00
2d6acc29e8
gnu: emacs-counsel: Update to 0.14.2.
...
* gnu/packages/emacs-xyz.scm (emacs-counsel): Update to 0.14.2.
Change-Id: I351610c4c91ac634ec8e4dda808937b050bc912e
2023-11-08 15:20:48 +01:00
2d6ebcbcc4
gnu: emacs-ivy: Update to 0.14.2.
...
* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.14.2.
Change-Id: I5299af740db0a9ebc80218fe350b9113b67cfa22
2023-11-08 15:20:47 +01:00
024c099672
gnu: emacs-company: Update to 0.10.2.
...
* gnu/packages/emacs-xyz.scm (emacs-company): Update to 0.10.2.
Change-Id: Ia92884da4664d051eeb23c7f245aac8ab5020cfe
2023-11-08 15:20:47 +01:00
c1f7e3e7b5
gnu: emacs-debbugs: Update to 0.37.
...
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.37.
Change-Id: I6df1eafb8801197670bb7efb7c2e1839ae741181
2023-11-08 15:20:47 +01:00
14adc3b53f
gnu: emacs-compat: Update to 29.1.4.3.
...
* gnu/packages/emacs-xyz.scm (emacs-compat): Update to 29.1.4.3.
Change-Id: Ie6c78b0adde92be3633b6c914a7ce65a9bc6d7fc
2023-11-08 15:20:47 +01:00
c620ac44d0
gnu: emacs-subed: Update to 1.2.6.
...
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.6.
Change-Id: Ied1c05299bdf1523221c13d2770bcbfbfdb47ac3
2023-11-08 15:20:46 +01:00
b310ca2bae
gnu: emacs-auctex: Update to 13.2.2.
...
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.2.
Change-Id: I1cc2d385b14f1a5c2bac90642c4c8a7e0be6a5c3
2023-11-08 15:20:46 +01:00
02f9a4150a
gnu: emacs-bbdb: Update to 3.2.2.4.
...
* gnu/packages/emacs-xyz.scm (emacs-bbdb): Update to 3.2.2.4.
Change-Id: I1b3c043bab7a6834cc515a93ae053fef69d8dbf4
2023-11-08 15:20:46 +01:00
26c148bd92
gnu: emacs-relint: Update to 1.24.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.24.
Change-Id: Ie7375ac6b87db9221234a073b18d797a5bb239c0
2023-11-08 15:20:45 +01:00
9443cd9959
gnu: emacs-xr: Update to 1.25.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.25.
Change-Id: I7470de1e0ea69afd345b1dbe7cec35275314cc88
2023-11-08 15:20:45 +01:00
08a926a6b0
gnu: emacs-org-caldav: Update to 3.0.
...
* gnu/packages/emacs-xyz.scm (emacs-org-caldav): Update to 3.0.
Change-Id: Idb8d9a8e1f9613c2c86552373f5c708df5dc1da0
2023-11-08 15:20:45 +01:00
f879d5a03b
gnu: Have vim packages use vim-build-system.
...
* gnu/packages/vim.scm (vim-neocomplete, vim-neocomplete-snippets,
vim-neosnippet, vim-scheme, vim-luna, vim-fugitive, vim-airline,
vim-airline-themes, vim-syntastic, neovim-syntastic, vim-solarized,
vim-rainbow, editorconfig-vim, neovim-packer, vim-guix-vim,
vim-asyncrun, vim-dispatch, vim-gemini-vim, vim-eunuch, vim-slime,
vim-vlime, vim-paredit, vim-surround, vim-gnupg, vim-ctrlp,
vim-mucomplete, vim-gitgutter, vim-characterize, vim-tagbar,
vim-nerdtree, vim-nerdcommander):
[build-system]: Switch to vim-build-system.
[arguments]: Adjust accordingly.
* gnu/packages/code.scm (global)[arguments]: Move vim files to their new
location.
* gnu/packages/lisp.scm (txr),
* gnu/packages/mail.scm (msmtp),
* gnu/packages/rust-apps.scm (skim),
* gnu/packages/vim.scm (vifm),
* gnu/packages/wm.scm (fluxbox): Same.
Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: I8b3e5d65d76a100c3dbddc1ae562b72966c2b304
2023-11-08 12:09:28 +02:00
b17567d45c
gnu: vim: Add vim packages to 'package-path' instead of 'runtime-path'.
...
This is neccesary because vim's built-in plugin manager looks for directories
under 'package-path' instead of 'runtime-path.' Once we have told vim the
package-path, it adds all the packages to the runtime-path automatically for us.
* gnu/packages/aux-files/guix.vim: Add paths to packagepath instead of
runtimepath. Remove code to adjust runtimepath after adding paths.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-11-08 10:28:55 +02:00
e8739da12e
gnu: git-lfs: Support building on more systems.
...
* gnu/packages/version-control.scm (git-lfs)[arguments]: Only run
man-page related phases when ruby-asciidoctor is available.
[native-inputs]: Only include ronn-ng, ruby-asciidoctor when building on
a platform which has support for ruby-asciidoctor.
Change-Id: Icbf8416998dc5d1f9d7c8299b4f929380dc29165
2023-11-08 09:27:24 +02:00
5da6e8961c
gnu: libreoffice: Update to 7.6.3.1.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 7.6.3.1.
[native-inputs]: Add frozen.
2023-11-07 22:35:32 -05:00
f296ceaafc
gnu: Add frozen.
...
* gnu/packages/cpp.scm (frozen): New variable.
Change-Id: I738dfcfa55ddb824c2186fb61484a8a3c9532b35
2023-11-07 22:35:31 -05:00
36c03db7ce
gnu: libcmis: Update to 0.6.0.
...
* gnu/packages/libreoffice.scm (libcmis): Update to 0.6.0.
Change-Id: I2aeb6ecd67fcb281e61fbd48b4aa63d2763007a3
2023-11-07 22:29:21 -05:00
e4443561d2
gnu: orcus: Update to 0.19.0.
...
* gnu/packages/libreoffice.scm (orcus): Update to 0.19.0.
[source]: Use git-fetch/lfs.
[arguments]: Use gexps.
[native-inputs]: Add autoconf, automake and libtool.
Change-Id: I76efbc57ca4acf8ffd5154a72e49b4aedd071a76
2023-11-07 12:33:26 -05:00
370468c547
gnu: ixion: Update to 0.19.0.
...
* gnu/packages/libreoffice.scm (ixion): Update to 0.19.0.
[source]: Use git.
[native-inputs]: Add autoconf, automake and libtool.
Change-Id: I245457d7c99b6adfb895dc46276f8008ff13d0cd
2023-11-07 12:33:26 -05:00
e18af936ff
gnu: mdds: Update to 2.1.1.
...
* gnu/packages/boost.scm (mdds): Update to 2.1.1.
[source]: Fetch from git.
[native-inputs]: New field.
Change-Id: I4e71d5c360f4b7305cffd7008e2bbbfcaad2f897
2023-11-07 12:33:26 -05:00
fd20e0d5f4
gnu: emacs-telega-server: Update to 0.8.203.
...
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to 0.8.203.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-11-07 21:06:11 +04:00
d01a138093
gnu: tdlib: Update to 1.8.20.
...
* gnu/packages/messaging.scm (tdlib): Update to 1.8.20.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-11-07 21:06:10 +04:00
c7408f50d1
gnu: mes: Use m2-planet-1.9.0.
...
* gnu/packages/mes.scm (mes)[native-inputs]: Revert to m2-planet-1.9.0.
Change-Id: Iac504f5b46bac4c989af914415b14955a072278e
2023-11-07 16:42:32 +01:00
009621092b
gnu: Add m2-planet-1.9.0
...
* gnu/packages/mes.scm (m2-planet-1.9.0): New variable.
2023-11-07 16:36:46 +01:00
3f83dc5587
gnu: ublock-origin: Update to 1.53.0.
...
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.53.0.
(ublock-main-assets): Update to d573d4db0bccb3f99fa8845c2b1dcb79103007d3.
(ublock-prod-assets): Update to c7cfd8fb7e4ea07051f55f370d504c78e6a8e023.
Change-Id: I1c9ac9e130bb8146904229f951de9b42d5c84479
2023-11-06 14:46:30 +01:00
d52ee267ee
gnu: streamlink: Update to 6.3.1.
...
* gnu/packages/video.scm (streamlink): Update to 6.3.1.
[source]: Add snippet to accept older versions of python-trio.
[native-inputs]: Remove python-mock. Add python-pytest-asyncio,
python-pytest-trio.
[propagated-inputs]: Add python-trio, python-trio-websocket,
python-typing-websockets.
Change-Id: Ib3e8930ed73974ddad4deb7015049b96c925b656
2023-11-06 09:55:00 +02:00
be46ab7a91
gnu: mpv-mpris: Update to 1.1.
...
* gnu/packages/video.scm (mpv-mpris): Update to 1.1.
[inputs]: Add ffmpeg.
Change-Id: I47f99a71681807c034b44518e7d4e5ed857ac77e
2023-11-06 09:19:31 +02:00
7e214b9a1a
gnu: linux-libre 6.5: Update to 6.5.10.
...
* gnu/packages/linux.scm (linux-libre-6.5-version): Update to 6.5.10.
(linux-libre-6.5-pristine-source): Update hash.
Change-Id: Icc0c07d8f38659be00e3675c335801aab5ae8b6c
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:05 -04:00
61ba1a6133
gnu: linux-libre 6.1: Update to 6.1.61.
...
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.61.
(linux-libre-6.1-pristine-source): Update hash.
(deblob-scripts-6.1): Update hash.
Change-Id: Iaab673a11ff578ac7671999deb7d31f4dfd5b1e2
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:05 -04:00
08d94fe20e
home: services: Add 'x11-display' service.
...
* gnu/home/services/desktop.scm (x11-shepherd-service): New procedure.
(home-x11-service-type): New variable.
(redshift-shepherd-service): Add 'requirement' field.
(home-redshift-service-type): Extend 'home-x11-service-type'.
* doc/guix.texi (Desktop Home Services): Document it.
Change-Id: Ibd46d71cbb80fcdff8dbf3e8dbcfc3b24163bdb6
2023-11-05 23:23:23 +01:00
31b39f2a33
tests: inetd: Avoid race condition when looking for PID file.
...
* gnu/tests/networking.scm (run-inetd-test): Use ‘wait-for-file’ instead
of ‘file-exists?’.
Change-Id: I3e596814485428fb81595d81c4e03519340c6576
2023-11-05 23:23:23 +01:00
0c695bbf8d
tests: Honor system and target when lowering <system-test>.
...
* gnu/tests.scm (compile-system-test): Wrap ‘system-test-value’ call in
‘mparameterize’.
Change-Id: I4be28913a86f43059b0886ad2fcf81a9c699b730
2023-11-05 23:23:23 +01:00
286639c9af
gnu: phantomsocks: Update to 0.0.0-20231031033204-8b0ac27fc450.
...
* gnu/packages/networking.scm (phantomsocks): Update to
0.0.0-20231031033204-8b0ac27fc450.
[arguments]<#:go>: Use go-1.20.
Change-Id: I8cee734d5582c99b7940591ba14fba927992a201
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:14:26 +00:00
c5267d334a
gnu: emacs-wanderlust: Update to 2.15.9-803.3e8cf26.
...
* gnu/packages/emacs-xyz.scm (emacs-wanderlust): Update to 2.15.9-803.3e8cf26.
[version]: Inline version.
Change-Id: I4b9a08016e525df80745d266f4932956475ef24b
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:13:51 +00:00
56c0c79511
gnu: emacs-semi-epg: Update to 1.14.6-247.d15603b.
...
* gnu/packages/emacs-xyz.scm (emacs-semi-epg): Update to 1.14.6-247.d15603b.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:13:51 +00:00
7995a474ea
gnu: python-asdf: Update to 3.0.0.
...
* gnu/packages/astronomy.scm (python-asdf-3.0): New variable, migrated
from python-asdf.
[arguments]: Move it from here ...
[native-inputs]: Remove python-astronomy, python-pytest-openfiles.
[propagated-inputs]: Add python-attrs. Remove
python-importlib-resources, python-jsonschema.
(python-asdf-2.15): New variable. Inherited from python-asdf-3.0.
[arguments]: ... to here.
(python-asdf): Set it to use python-asdf-2.15 as 3.0.0 includes some
breaking changes which may not testes in dependent projects.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
9f06cf2ed8
gnu: python-pytest-astropy: Update to 0.11.0.
...
* gnu/packages/python-check (python-pytest-astropy): Update to 0.11.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
c13950ad27
gnu: python-pytest-doctestplus: Update to 1.0.0.
...
* gnu/packages/python-check (python-pytest-doctestplus): Update to 1.0.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
a72d7beb3f
gnu: python-pytest-remotedata: Update to 0.4.1.
...
* gnu/packages/python-check (python-pytest-remotedata): Update to 0.4.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
2f33ac988c
gnu: python-jwst: Update to 1.12.5.
...
* gnu/packages/astronomy.scm (python-jwst): Update to 1.12.5.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
53a4452e98
gnu: python-ephem: Update to 4.1.5.
...
* gnu/packages/astronomy.scm (python-ephem): Update to 4.1.5.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
7e7a3bd6e0
gnu: python-crds: Update to 11.17.7.
...
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.7.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
944005417d
gnu: python-cdflib: Update to 1.2.3.
...
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.3.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
0420667cbe
gnu: python-astropy: Update to 5.3.4.
...
* gnu/packages/astronomy.scm (python-astropy): Update to 5.3.4.
[arguments]{phases}: Disable one failing test, reported upstream.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:36 +00:00
20e7aa2732
gnu: libxisf: Update to 0.2.10.
...
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.10.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
966ffbf8c6
gnu: python-pyerfa: Update to 2.0.1.1.
...
* gnu/packages/astronomy.scm (python-pyerfa): Update to 2.0.1.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
95a1688229
gnu: erfa: Update to 2.0.1.
...
* gnu/packages/astronomy.scm (erfa): Update to 2.0.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
d9b6426cbb
gnu: python-astroalign: Update to 2.5.0.
...
* gnu/packages/astronomy.scm (python-astroalign): Update to 2.5.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
10917afe67
gnu: python-cdflib: Update to 1.2.2.
...
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.2.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
4d4e9b84ee
gnu: python-pynbody: Update to 1.4.1.
...
* gnu/packages/astronomy.scm (python-pynbody): Update to 1.4.1.
[source]: Switch to git-fetch.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
0d7e51d8ee
gnu: python-spherical-geometry: Enable tests.
...
* gnu/packages/astronomy.scm (python-spherical-geometry): Enable tests.
[build-system]: Switch to pyproject-build-system.
[arguments]{phases}: Add 'build-extensions phase.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
a8c1c98690
gnu: python-spherical-geometry: Simplify package.
...
* gnu/packages/astronomy.scm (python-spherical-geometry):
[arguments]{phases}<preparations>: Switch to
SETUPTOOLS_SCM_PRETEND_VERSION evnar instead modifying setup.py.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
e7b315216a
gnu: imppg: Use standard configure phase.
...
* gnu/packages/astronomy.scm (imppg): Use G-expressions.
[arguments]{phases}: Use 'configure standard phase instead of
replacement.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
b4be620009
gnu: glnemo2: Fix home-page.
...
* gnu/packages/astronomy.scm (glnemo2): Fix home-page to point to actual
project's one.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:09:35 +00:00
913d52952b
gnu: font-google-noto: Update to 23.11.1.
...
[1] indicates that [2] is the new _distribution_ upstream for Noto fonts.
[1]: <https://github.com/notofonts/noto-fonts >
[2]: <https://github.com/notofonts/notofonts.github.io >
* gnu/packages/fonts.scm (font-google-noto): Update to 23.11.1.
[source]<method>: Switch to git-fetch.
Change-Id: I242710336ec81489f9800b68416f45c57d28b2bd
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 18:08:20 +00:00
04cb25ab9e
gnu: sbcl-cl-webkit: Update to 3.5.10.
...
gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.5.10.
Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: Ibd54d701a28267fe4fbb979112155839de9d89e5
2023-11-05 18:03:13 +00:00
bf6fdf76b0
gnu: Remove dunst.scm.
...
The dunst package is much beter suited to be in wm.scm. This patch deletes
dunst.scm, moves dunst to wm.scm, and removes dunst.scm from the build
process.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove dunst.scm.
* gnu/packages/dunst.scm: Delete file.
* gnu/packages/wm.scm (dunst): New variable.
Change-Id: I3b074f12f34e14ef1101069ed45ddb33f8d3ea51
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 17:57:56 +00:00
a482d3d9ba
gnu: dunst: Update to 1.9.2.
...
* gnu/packages/dunst.scm (dunst): Update to 1.9.2.
[arguments]: Use gexps.
Change-Id: Ic13f1679074462918991a1ceba8571a46e721224
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-11-05 17:57:49 +00:00
ab94e80601
gnu: node-lts: Update to 18.18.2.
...
* gnu/packages/node.scm (node-lts): Update to 18.18.2.
[arguments]<phases>: Add 'install-node-gyp-wrapper phase.
Change-Id: I6b17de33313505558a8fa9560126adef486fd0e3
2023-11-05 12:37:18 +01:00
175532b749
gnu: Add rust-blake2-0.10.
...
* gnu/packages/crates-io.scm (rust-blake2-0.10): New variable.
Change-Id: I8cb30f21a62c563c9c7c559765d9672aed6680ad
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-11-05 12:22:39 +02:00
7684214b3d
gnu: m2-planet: Update to 1.11.0.
...
* gnu/packages/mes.scm (m2-planet): Update to 1.11.0.
Change-Id: I65ebb434a090e0a57dac50764f16523946a6fa3f
2023-11-05 11:00:16 +01:00
09feb16a0c
gnu: mescc-tools: Update to 1.5.0.
...
* gnu/packages/mes.scm (mescc-tools): Update to 1.5.0.
Change-Id: I53f6923b8378b5205356e068aa1f1481a9bf7b42
2023-11-05 10:59:40 +01:00
4826856977
gnu: icedtea-7: Fix building on powerpc-linux.
...
* gnu/packages/java.scm (icedtea-7)[arguments]: Adjust custom
'install-libjvm phase to add support for powerpc-linux.
Change-Id: Ie77a2b53fdef1e0ddc0351e6c2d0241d08b80508
2023-11-05 08:42:48 +02:00
adf716c171
gnu: Add r-screpertoire.
...
* gnu/packages/bioconductor.scm (r-screpertoire): New variable.
Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15
2023-11-04 23:13:51 +01:00
01b7d917a2
gnu: Add r-powertcr.
...
* gnu/packages/bioconductor.scm (r-powertcr): New variable.
Change-Id: I75fc30a7021d6199b768318da3afcfeaaafcf027
2023-11-04 23:13:51 +01:00
1678be98f2
gnu: Add r-evmix.
...
* gnu/packages/cran.scm (r-evmix): New variable.
Change-Id: I93152dee218e9cef85dd66e17231f1728f0ffb52
2023-11-04 23:13:51 +01:00
ab64815f6a
gnu: Add r-truncdist.
...
* gnu/packages/cran.scm (r-truncdist): New variable.
Change-Id: Icb9f06a36e5ee5a58828dc2f496b71a850a911b9
2023-11-04 23:13:51 +01:00
3f991b817d
gnu: Add r-evd.
...
* gnu/packages/cran.scm (r-evd): New variable.
Change-Id: I1f3b2ee5829807f6f76cf87b4df43ae8005688bc
2023-11-04 23:13:51 +01:00
e3f318f048
gnu: linux-libre 5.10: Fix the hash of the deblob-scripts.
...
This is a followup to commit e672066097
2023-07-23 22:26:01 -04:00
3bb6938ffc
gnu: linux-libre 5.15: Fix the hash of the deblob-scripts.
...
This is a followup to commit b26526ea05
2023-07-23 22:26:00 -04:00
1d4813f275
gnu: linux-libre 6.1: Fix the hash of the deblob-scripts.
...
This is a followup to commit 26709726a8
2023-07-23 22:26:00 -04:00
58786c82df
gnu: Add r-rnbeads.
...
* gnu/packages/bioconductor.scm (r-rnbeads): New variable.
Change-Id: I78b248a449473fc37ac414295faa6e61269b8625
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-04 17:09:53 +01:00
4c17016019
gnu: Add r-ewastools.
...
* gnu/packages/bioinformatics.scm (r-ewastools): New variable.
Change-Id: I4117dbee188c7d9547fe63b2b89ec9258bbda60b
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-04 17:03:24 +01:00
a04800b811
gnu: Add r-mblm.
...
* gnu/packages/cran.scm (r-mblm): New variable.
Change-Id: Iddfa9bc03a4e5782623253cb70d1ae888545e2ec
2023-11-04 17:03:24 +01:00
e16d152463
gnu: Add r-dnamcrosshyb.
...
* gnu/packages/bioinformatics.scm (r-dnamcrosshyb): New variable.
Change-Id: I19e332e6adf0ce9cc721d89bb74a1aa709778873
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-04 16:30:11 +01:00
cb0e60cccf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked.
...
* gnu/packages/bioconductor.scm
(r-bsgenome-hsapiens-ucsc-hg38-masked): New variable.
Change-Id: Ic1b646a3bd3b7262dd82f0972961c2e89628e90b
2023-11-04 16:30:11 +01:00
9dcd8802f5
gnu: python-pikepdf: Fix embedded version string.
...
* gnu/packages/python-xyz.scm (python-pikepdf)[native-inputs]: Add
python-setuptools-scm to correct embedded version form 0.0.0 to 1.17.0.
Change-Id: I659ed3e725fff6afe17abe6f55449567ba84cdfc
2023-11-04 19:05:28 +08:00
33644303a1
gnu: emacs-org-ql-dynamic-agenda: Rename to emacs-org-dynamic-agenda-ql.
...
* /gnu/packages/emacs-xyz.scm (emacs-org-ql-dynamic-agenda): Rename to…
(emacs-org-dynamic-agenda-ql): …this.
[arguments]<#:include>: Adjust according to source change.
Change-Id: I4b09933a17d301e3017f1628414eade1ee174538
2023-11-04 19:03:39 +08:00
7eeab6417f
gnu: Add r-methylaid.
...
* gnu/packages/bioconductor.scm (r-methylaid): New variable.
Change-Id: I7839035e5316bdbe5f1386b7b41ed2fc440fb432
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-04 11:37:15 +01:00
f54f36b363
gnu: passff-host: Add explicit references to inputs and remove some.
...
This removes ‘coreutils’, ‘grep’, ‘sed’, ‘which’, ‘bash-minimal’ and
‘gnu-make’ inputs, which were only used by the Makefile and
install_host_app.sh. Instead of running install_host_app.sh (through
‘make’) which does a few text substitutions, do the text substitutions with
Scheme code. This simplifies things and avoids unnecessary native inputs.
* gnu/packages/browser-extensions.scm (passff-host)[build-system]: Change to
copy-build-system.
[arguments]: Copy passff.json and passff.py. Do text substitutions on
them rather than running make. Refer to ‘password-store’ and ‘python’ through
inputs rather than directly.
[inputs]: Add PASSWORD-STORE and PYTHON.
Change-Id: I8fdb757516a7c30eae36b15f2a8d91e1445b19a5
2023-11-04 00:52:39 +01:00
625cfb4c4c
gnu: password-store: Add missing ‘tail’ input.
...
* gnu/packages/password-utils.scm (password-store)[arguments]: Add “tail” to
the list of requisites.
[inputs]: Add COREUTILS.
Change-Id: I7f59e6c0abfb5396b9548edaec08d3b0a7c0eb23
2023-11-04 00:52:38 +01:00
10d728139d
gnu: Add r-ggbreak.
...
* gnu/packages/cran.scm (r-ggbreak): New variable.
Change-Id: I27d62d0110fb56e77dc8cf82581adb6259317c2d
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-11-03 23:39:57 +01:00
479fdc8451
gnu: python-pymc: Update to 5.9.1.
...
* gnu/packages/statistics.scm (python-pymc): Update to 5.9.1.
Change-Id: I3d7927e7173f36ba4edeab06bd930c285432c29f
2023-11-03 19:25:36 -03:00
43d9fa0802
gnu: python-pytensor: Update to 2.17.3.
...
* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3.
Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45
2023-11-03 19:25:36 -03:00
1879bfd88f
gnu: python-deepxde: Update to 1.10.0.
...
* gnu/packages/machine-learning.scm (python-deepxde): Update to 1.10.0.
Change-Id: Ibc37f9e7df45c49f590beb1dda87236e853b88c1
2023-11-03 19:25:36 -03:00
96e8502faa
gnu: Add python-emcee.
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* gnu/packages/statistics.scm (python-emcee): New variable.
2023-11-03 19:25:35 -03:00
a7d56852e3
gnu: Add python-salib.
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* gnu/packages/python-science.scm (python-salib): New variable.
2023-11-03 19:25:35 -03:00
9642b1c7af
gnu: python-openturns: Update to 1.21.1.
...
* gnu/packages/statistics.scm (python-openturns): Update to 1.21.1.
2023-11-03 19:25:35 -03:00
a55c3110be
gnu: python-opentsne: Update to 1.0.0.
...
* gnu/packages/machine-learning.scm (python-opentsne): Update to 1.0.0.
2023-11-03 19:25:35 -03:00
ef473d3422
gnu: symengine: Update to 0.11.1.
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* gnu/packages/algebra.scm (symengine): Update to 0.11.1.
2023-11-03 19:25:31 -03:00
eb93ab2d14
gnu: r-gdata: Remove Excel from description.
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gdata 3.0.0 has removed support for reading Excel files.
* gnu/packages/statistics.scm (r-gdata)[description]: Update it.
Change-Id: Ic4090bc765d330d38136bf1b1dbbb6bb136edd39
2023-11-03 22:49:28 +01:00
8be2f44765
gnu: Remove r-sigpathway.
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This package has been removed with the release of Bioconductor 3.18.
* gnu/packages/bioconductor.scm (r-sigpathway): Remove variable.
Change-Id: I5cb9d938f370aa28b196f9cea95fb6024c2e6e37
2023-11-03 22:49:28 +01:00
38b5777ec8
gnu: r-rhdf5filters: Simplify.
...
* gnu/packages/bioconductor.scm (r-rhdf5filters)[arguments]: Remove
'use-system-libraries phase and pass configure flags to disable bundled
libraries.
Change-Id: I2fb115e7b3df00cccb3f8d6659d465075d21f19b
2023-11-03 22:49:28 +01:00
78641cf9da
gnu: r-spams: Build with C++11.
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* gnu/packages/statistics.scm (r-spams)[arguments]: Add phase 'use-c++11.
Change-Id: Ie477af6afe8993919090f6c81e071cee542e69bc
2023-11-03 22:49:28 +01:00
142313cf0c
gnu: Remove r-genomegraphs.
...
This package had been removed from Bioconductor with release 3.11.
* gnu/packages/bioconductor.scm (r-genomegraphs): Remove variable.
Change-Id: I73cc8cc8546089d91212176939b8c0c0a7afc309
2023-11-03 22:49:28 +01:00
0150529188
gnu: Remove r-wavetiling.
...
This package had been removed from Bioconductor since release 3.12.
* gnu/packages/bioconductor.scm (r-wavetiling): Remove variable.
Change-Id: I5eb624d975f0eb170b263266b144eacf11944580
2023-11-03 22:49:28 +01:00
abaca151b2
gnu: r-mpo-db: Include HPO sqlite database.
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* gnu/packages/bioconductor.scm (r-mpo-db)[arguments]: Bypass fetching of the
database from the internet when in build environment.
[native-inputs]: Add MPO.sqlite.
Change-Id: Ic7228322b89ce78a85a9bd5ffbd985ccd906d268
2023-11-03 22:49:28 +01:00
b30127052e
gnu: r-readwriter: Update to 0.3.2-1.12d32cb.
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* gnu/packages/bioinformatics.scm (r-readwriter): Update to 0.3.2-1.12d32cb.
Change-Id: I412190ce94bee4e7b5fce27db7ef8a72188e74f4
2023-11-03 22:49:28 +01:00
c66c66ee3f
gnu: r-hpo-db: Include HPO sqlite database.
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* gnu/packages/bioconductor.scm (r-hpo-db)[arguments]: Bypass fetching of the
database from the internet when in build environment.
[native-inputs]: Add HPO.sqlite.
Change-Id: Ie01605ef2531d992fb85c07bae5cfaabda626ea6
2023-11-03 22:49:28 +01:00
a938342899
gnu: r-rhdf5lib: Adjust modifications to Makevars.
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* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Adjust patch.
Change-Id: Iaef3d2d80c22de1c2a0b64e7c13f5fa3b8e5719d
2023-11-03 22:49:28 +01:00
c82c9c8090
gnu: r-phyloseq: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.46.0.
Change-Id: Id11b5e913529ac8efce0d046168f4a9dbe0dbabd
2023-11-03 22:49:28 +01:00
1c3e8ab395
gnu: r-tximeta: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.0.
Change-Id: I8d9c5d01efc8f6c64290cdfdd193d95cd1da9152
2023-11-03 22:49:28 +01:00
270d7e1079
gnu: r-tricycle: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.10.0.
Change-Id: I72a9e1140c17ce8605bfe6e83cc290eb1ae2fad2
2023-11-03 22:49:28 +01:00
9ee38f4ee6
gnu: r-tcgabiolinks: Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.30.0.
Change-Id: If7e571bfa6454bfa94dd395606575391dc506ecd
2023-11-03 22:49:28 +01:00
28480926a5
gnu: r-biscuiteer: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.16.0.
Change-Id: Ib6cffbbeedfe87932acfcbfb2b789b4c92a9bf81
2023-11-03 22:49:28 +01:00
53ebbff56c
gnu: r-omnipathr: Update to 3.10.1.
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* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.10.1.
[propagated-inputs]: Add r-lubridate and r-stringi.
Change-Id: Ia18b66848cd6996dfdc551bf4b182bb5ac3e17a8
2023-11-03 22:49:28 +01:00
41a4f01473
gnu: r-omicade4: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.42.0.
Change-Id: I4369e5721116bf73f096ee39a516ada94c348872
2023-11-03 22:49:28 +01:00
73efb254d8
gnu: r-dmrseq: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.22.0.
Change-Id: I738c2fb7e0fa3e816d3767f854b8f9ed77425591
2023-11-03 22:49:28 +01:00
f6e56299e7
gnu: r-dada2: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-dada2): Update to 1.30.0.
Change-Id: I0955c3a61b4d81cd6809e2eb287d8acfcccfb789
2023-11-03 22:49:28 +01:00
407e9b2710
gnu: r-bsseq: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.38.0.
Change-Id: Ie31f0b5c726da98a0caa4c658a5c62c1a5f40eaa
2023-11-03 22:49:28 +01:00
69d7d7a6db
gnu: r-biotmle: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.26.0.
Change-Id: Ied1d1e649fba277aa724040af31334f664d2debd
2023-11-03 22:49:28 +01:00
9f2c8b711b
gnu: r-biotip: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-biotip): Update to 1.16.0.
Change-Id: I73503554b0271e5fe950c6da367b4893972f27e9
2023-11-03 22:49:28 +01:00
a7d1b8832a
gnu: r-bioqc: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.30.0.
Change-Id: I0b5fd7cac1283a7f12a1221ad453eb56767e8b90
2023-11-03 22:49:28 +01:00
ee259a9ad9
gnu: r-bionetstat: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.22.0.
Change-Id: I92f2ebef0b65b947a719bdd1008f07ce279263a4
2023-11-03 22:49:28 +01:00
b0190a7d5c
gnu: r-bionet: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-bionet): Update to 1.62.0.
Change-Id: I0712a4ba67c27b32d6666e91d9515f0299e61848
2023-11-03 22:49:27 +01:00
63f3a845ea
gnu: r-bionero: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.0.
Change-Id: I396a37dd28571a471b45d4d8aca6ce40a1cbd384
2023-11-03 22:49:27 +01:00
4ccceb31b9
gnu: r-biomvcclass: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.70.0.
Change-Id: I0c6214669ec284d314eb7dc90270558934070e4b
2023-11-03 22:49:27 +01:00
b4e803a8a9
gnu: r-mvcclass: Update to 1.76.0.
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* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.76.0.
Change-Id: I6e7fa851c804009ae41a955b117d95b33fd1b2f0
2023-11-03 22:49:27 +01:00
c91a1a8bc8
gnu: r-biomformat: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.30.0.
Change-Id: I661d11f81a0dedbc8381b5ba1806643b5ff52aa6
2023-11-03 22:49:27 +01:00
2b4dcd4a7b
gnu: r-biodb: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-biodb): Update to 1.10.0.
Change-Id: If1d14855b2bf134741c54c0a51daefdf2b80a49f
2023-11-03 22:49:27 +01:00
9480ea5046
gnu: r-biocthis: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.12.0.
Change-Id: I8400ebfd178f916488e022152e75db59f05994e6
2023-11-03 22:49:27 +01:00
327c9bd7c8
gnu: r-basilisk: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.0.
Change-Id: I86f5306de138eb1fedffbae65c14f9acd504c86c
2023-11-03 22:49:27 +01:00
b5527cc3c6
gnu: r-basilisk-utils: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.0.
Change-Id: I6113042a10770ee50e4ef997ee41fe109f917885
2023-11-03 22:49:27 +01:00
b2389dcfc1
gnu: r-dir-expiry: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.10.0.
Change-Id: I1081ec981a52a51a351d98e5079f8fd4bcc399d0
2023-11-03 22:49:27 +01:00
d5026a9e16
gnu: r-genetclassifier: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.42.0.
Change-Id: I323ca2d408c640b05c9d845570ee7af28616cce2
2023-11-03 22:49:27 +01:00
31fef7c331
gnu: r-minet: Update to 3.60.0.
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* gnu/packages/bioconductor.scm (r-minet): Update to 3.60.0.
Change-Id: I4944d2e34aacc6d3ba8c5a2d2176ecf7b33ca6b8
2023-11-03 22:49:27 +01:00
ae127ddf0d
gnu: r-biobtreer: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.14.0.
Change-Id: Icf0458c6931237a405178361778a68c1a068337c
2023-11-03 22:49:27 +01:00
d40b4c5063
gnu: r-bgeedb: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.28.0.
Change-Id: I558f36065a9a751710843f21c6089231309705ca
2023-11-03 22:49:27 +01:00
38f88c84bf
gnu: r-bgeecall: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.18.1.
Change-Id: I5db747786c63f248dec01879e41a9837c94d6d6c
2023-11-03 22:49:27 +01:00
58661d1d54
gnu: r-beclear: Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-beclear): Update to 2.18.0.
Change-Id: Ia52d2072c95c4ff68cabe22cd6f9da8f3f7833b3
2023-11-03 22:49:27 +01:00
6ddf9ed610
gnu: r-megadepth: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.12.0.
Change-Id: Ia8424334f3183442a8e7ffb21ba664b93f6342a3
2023-11-03 22:49:27 +01:00
9d0492c750
gnu: r-ballgown: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.34.0.
Change-Id: Ice69c2be8df89cb103e73de328ac6eb5919f0502
2023-11-03 22:49:27 +01:00
7e36e3ed55
gnu: r-guitar: Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-guitar): Update to 2.18.0.
Change-Id: I2cd39de6e1fedbc3ed9a137373d6836e930296f2
2023-11-03 22:49:27 +01:00
0c881be497
gnu: r-chromstar: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.28.0.
Change-Id: I48a305a00b1fe7c89ca4f9700ebe6f65a6265080
2023-11-03 22:49:27 +01:00
d775b141cf
gnu: r-snpstats: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.52.0.
Change-Id: Ia770e5b05a7998d552b8ccb5386ddc1ad6722217
2023-11-03 22:49:27 +01:00
3b0e948493
gnu: r-snprelate: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.36.0.
Change-Id: I79ab3d448ab4b10a97d9c9d36b3b849a7c491508
2023-11-03 22:49:27 +01:00
bbe5704c17
gnu: r-snapcgh: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.72.0.
Change-Id: I7b2adbcb45461b5dc4f8248f92bfbda5f145d906
2023-11-03 22:49:27 +01:00
6b8c604e48
gnu: r-pathview: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-pathview): Update to 1.42.0.
Change-Id: I56a1425210667cc9b1ee41d20b9a71a749f6ff91
2023-11-03 22:49:27 +01:00
740e7ff51b
gnu: r-parody: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-parody): Update to 1.60.0.
Change-Id: I409588b32e582c0c6cd631d56a92ca430e2429d4
2023-11-03 22:49:27 +01:00
e9618ab210
gnu: r-ldblock: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.32.0.
Change-Id: I4183a3b48e050120ffb1e5cbba3894a5637ad1cc
2023-11-03 22:49:27 +01:00
9f139605ef
gnu: r-kegggraph: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.62.0.
Change-Id: Iadaa3580a5755ca5e611d980241191c4ae8b9452
2023-11-03 22:49:27 +01:00
b6288f949f
gnu: r-gwastools: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.48.0.
[native-inputs]: Add r-knitr.
Change-Id: I0544357b6f954e4812d1cdb983e12ed34f83b0d1
2023-11-03 22:49:27 +01:00
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