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Author SHA1 Message Date
kiasoc5 253fc14777
gnu: nftables: Update to 1.0.2. 
* gnu/packages/patches/nftables-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (nftables): Update to 1.0.2.
[source]: Add patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-06 10:32:06 +02:00
Vincent Prat 9e630a362d
gnu: Add python-arpeggio. 
* gnu/packages/python-xyz.scm (python-arpeggio): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-06 10:32:06 +02:00
Michael Rohleder 7727757a73
gnu: ytfzf: Update to 2.3. 
* gnu/packages/patches/ytfzf-programs.patch,
* gnu/packages/patches/ytfzf-updates.patch: Delete patches.
* gnu/local.mk (dist_patch_DATA): Unregister them.
* gnu/packages/image-viewers.scm (ytfzf): Update to 2.3.
[source]: Delete patches.
[arguments]: Remove phase 'patch-script. Add phase 'install-addons,
'wrap-program.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-06 10:32:06 +02:00
Ludovic Courtès 3d05105705
gnu: slurm: Add 21.08.8. 
* gnu/packages/parallel.scm (slurm): Update to 21.08.8.
(slurm-20.11): New variable.
 2022-05-06 10:32:05 +02:00
Ludovic Courtès c018871c04
gnu: slurm: Update to 20.11.9 [fixes CVE-2022-{29500,29501,29502}]. 
* gnu/packages/parallel.scm (slurm): Update to 20.11.9.
 2022-05-06 10:32:05 +02:00
Ricardo Wurmus a2fb35e43d
gnu: python-ipython: Add missing input. 
* gnu/packages/python-xyz.scm (python-ipython)[propagated-inputs]: Add
python-decorator.
 2022-05-06 10:15:04 +02:00
Ricardo Wurmus ce1746819b
gnu: python-traitlets: Update to 5.1.1. 
* gnu/packages/python-xyz.scm (python-traitlets): Update to 5.1.1.
[propagated-inputs]: Remove python-ipython-genutils, python-decorator, and
python-six.
 2022-05-06 10:15:04 +02:00
Ricardo Wurmus 471f650498
gnu: Add python-kneed. 
* gnu/packages/python-xyz.scm (python-kneed): New variable.
 2022-05-06 10:15:04 +02:00
Ricardo Wurmus b4da7c2133
gnu: Add python-databases. 
* gnu/packages/databases.scm (python-databases): New variable.
 2022-05-06 10:15:04 +02:00
Ricardo Wurmus 43992cdbea
gnu: python-anyio: Update to 3.5.0. 
* gnu/packages/python-xyz.scm (python-anyio): Update to 3.5.0.
[arguments]: Remove phase 'fix-compatibility; disable one more test.
[propagated-inputs]: Add python-contextvars and python-dataclasses.
[native-inputs]: Add python-contextlib2 and python-trio; remove
python-iniconfig.
 2022-05-06 10:15:04 +02:00
Ricardo Wurmus b95e3dc17c
gnu: python-multipart: Fix test failure due to PyYAML 6. 
* gnu/packages/python-xyz.scm (python-multipart)[arguments]: Patch instance of
yaml.load.
 2022-05-06 10:15:00 +02:00
Foo Chuan Wei 312879fddc
gnu: Add byacc. 
* gnu/packages/c.scm (byacc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-05 23:56:58 +02:00
Ludovic Courtès 0780164f1f
gnu: b4: Update to 0.8.0. 
* gnu/packages/version-control.scm (b4): Update to 0.8.0.
 2022-05-05 23:56:58 +02:00
Pierre-Antoine Bouttier 6829d61bc5
gnu: Add n2p2. 
* gnu/packages/maths.scm (n2p2): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-05 23:56:58 +02:00
Jonathan Brielmaier 34dbbb9172
gnu: icedove: Update to 91.9.0 [fixes CVE-2022-1520]. 
* gnu/packages/gnuzilla.scm (icedove): Update to 91.9.0.
 2022-05-05 23:09:48 +02:00
Andreas Enge d809e71df2
gnu: python-pari-jupyter: Update to 1.4.1. 
* gnu/packages/python-xyz.scm (python-pari-jupyter): Update to 1.4.1.
  [home-page]: Update after maintainer change.
 2022-05-05 16:14:43 +02:00
Andreas Enge a1b0fc8133
gnu: cm: Update to 0.4.0. 
* gnu/packages/algebra.scm (cm): Update to 0.4.0.
 2022-05-05 16:10:16 +02:00
Marius Bakke b80ca672de
gnu: ungoogled-chromium: Update to 101.0.4951.54-1. 
* gnu/packages/chromium.scm (%chromium-version): Set to 101.0.4951.54.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
 2022-05-03 22:35:12 +02:00
Mark H Weaver 9916933a04
gnu: icecat: Update to 91.9.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-29909, CVE-2022-29911, CVE-2022-29912,
CVE-2022-29914, CVE-2022-29916, and CVE-2022-29917.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2022-05-03 14:56:54 -04:00
Paul A. Patience 8b2d266607
gnu: dealii: Update to 9.3.3. 
* gnu/packages/maths.scm (dealii): Update to 9.3.3.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
Delete file.
* gnu/packages/patches/dealii-fix-sundials.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Paul A. Patience 240b604eda
gnu: dealii: Add SUNDIALS dependency. 
* gnu/packages/maths.scm (dealii)[propagated-inputs]: Add sundials-5.
Reformat list to clarify comment.
(dealii-openmpi)[propagated-inputs]: Add sundials-openmpi-5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Paul A. Patience d34f941c33
gnu: dealii-openmpi: Remove input labels. 
* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Remove labels.
[propagated-inputs]: Same.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Paul A. Patience e131f705dd
gnu: dealii: Remove trailing booleans. 
* gnu/packages/maths.scm (dealii)[snippet]: Remove trailing boolean (and
therefore the 'begin').
[native-inputs, inputs]: Reindent.
[arguments]<#:phases>: Remove trailing boolean.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Paul A. Patience e648957b7b
gnu: sundials: Add 5.8.0. 
* gnu/packages/maths.scm (sundials-5, sundials-openmpi-5): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience d1a6a795b3
gnu: sundials: Update to 6.2.0. 
* gnu/packages/maths.scm (sundials): Update to 6.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience 4c509a73b7
gnu: sundials-openmpi: Add HYPRE dependency. 
* gnu/packages/maths.scm (sundials-openmpi)[propagated-inputs]: Add
hypre-openmpi.
[arguments]<#:configure-flags>: Add -DENABLE_HYPRE, -DHYPRE_INCLUDE_DIR
and -DHYPRE_LIBRARY_DIR.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience 0d3c2c9543
gnu: sundials: Fix various issues. 
This commit fixes various issues. First, some of SUNDIALS's CMake
variables were renamed at some point between 5.2.0 and 5.7.0, in
particular KLU_ENABLE, which was changed to ENABLE_KLU. Since
sundials-julia is essentially SUNDIALS 5.2.0, its configure flags need
to be different from those of the sundials package. Second, commit
61bcd648ca, which updated SUNDIALS to
6.1.1, accidentally completely disabled PETSc support for
sundials-openmpi (PETSc is supported only with MPI) by removing the
relevant configure flags. Third, SUNDIALS's default index size is
64 bits, but PETSc's is 32 bits, and they need to be the same; this
issue is discussed in the next three paragraphs.

The default index size in SUNDIALS 3.1.1 (which was the sundials
package's version previous to the aforementioned commit) was also
64 bits (though it was configured through the SUNDIALS_INDEX_TYPE CMake
variable, which could take the values INT64_T or INT32_T), but
SUNDIALS's configure script didn't warn of any incompatibility with
PETSc's 32-bit indices. I don't know if this was an accidental omission
from the configure script or if SUNDIALS's index size didn't have to
correspond to PETSc's at the time.

Keeping 64-bit indices in SUNDIALS would require adding a package for
PETSc with 64-bit indices (using the --with-64-bit-indices configure
flag), possibly named petsc64-openmpi (to follow the style of the SCOTCH
packages, i.e., scotch, scotch32, etc., though there the unadorned
package name represents the 64-bit version, unlike the unadorned petsc),
which would in turn require a package for METIS with 64-bit
indices (using IDXTYPEWIDTH=64). However, SUNDIALS is an optional
dependency of deal.II, both of which have PETSc as an optional
dependency, and deal.II's index size (which defaults to 32 bits) must
match PETSc's. In other words, the current deal.II package can build
with SUNDIALS only if SUNDIALS has 32-bit indices.

Furthermore, users needing 64-bit indices in SUNDIALS probably also need
them in PETSc and other libraries. If and when 64-bit indices are deemed
necessary, we can add all the package variations at once (for SUNDIALS,
PETSc, METIS, deal.II and any others).

* gnu/packages/maths.scm (sundials)[source]: Reuse version in URL.
[native-inputs]: Capitalize and punctuate comment.
[inputs]: Remove petsc, now unnecessary gfortran, and obsolete
comment. Move TODO item to sundials-openmpi.
[arguments]<#:configure-flags>: Add -DSUNDIALS_INDEX_SIZE=32 to match
PETSc's 32-bit indices. Remove obsolete -DEXAMPLES_ENABLE_F77,
-DEXAMPLES_ENABLE_F90 and -DFCMIX_ENABLE. Mention new but currently
unusable -DBUILD_FORTRAN_MODULE_INTERFACE and
-DEXAMPLES_ENABLE_F2003. Rename KLU_ENABLE to ENABLE_KLU.
(sundials-openmpi): Use package/inherit.
[inputs]: Move openmpi and petsc-openmpi from here...
[propagated-inputs]: ...to here. Clarify comment.
[arguments]<#:configure-flags>: Add -DENABLE_PETSC and -DPETSC_DIR, the
equivalents of which were accidentally removed in commit
61bcd648ca.
<#:phases>: Replace a tab with spaces.
[synopsis]: Replace OpenMPI with MPI to conform to other package
synopses.
(sundials-julia)[inputs]: Add gfortran.
[arguments]<#:configure-flags>: Set only, and manually, -DCMAKE_C_FLAGS,
-DSUNDIALS_INDEX_SIZE, -DKLU_ENABLE, -DKLU_INCLUDE_DIR,
-DKLU_LIBRARY_DIR and -DLAPACK_ENABLE instead of inheriting from the
sundials package, because some of SUNDIALS's CMake variables have
changed name.
[synopsis]: Capitalize “LAPACK”.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience a3b6a4df6c
gnu: petsc-openmpi: Fix header inclusions. 
* gnu/packages/maths.scm (petsc-openmpi)[arguments]: Add
'patch-header-inclusions' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Ludovic Courtès 7855a9366b
services: pipefs: Correctly handle lack of extensions. 
Previously, in the absence of extensions of 'pipefs-service-type', we'd
get a wrong-type-arg exception while folding services:

  In gnu/services/nfs.scm:
     134:37  1 (_ #<<pipefs-configuration> mount-point: "/var/lib/nfs…> …)
  In ice-9/boot-9.scm:
    1685:16  0 (raise-exception _ #:continuable? _)
  In procedure car: Wrong type argument in position 1 (expecting pair): ()

* gnu/services/nfs.scm (pipefs-service-type)[extend]: Gracefully handle
the case where VALUES is the empty list, as done in 'gss-service-type'.
 2022-05-03 18:02:27 +02:00
Leo Famulari 654f878f0b
gnu: Mutt: Update to 2.2.4. 
* gnu/packages/mail.scm (mutt): Update to 2.2.4.
 2022-05-02 19:31:42 -04:00
Leo Famulari 39bdf71db1
gnu: linux-libre 4.19: Update to 4.19.241. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.241.
(linux-libre-4.19-pristine-source): Update hash.
 2022-05-02 18:57:38 -04:00
Leo Famulari ac2857e042
gnu: linux-libre 5.15: Update to 5.15.37. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.37.
(linux-libre-5.15-pristine-source): Update hash.
 2022-05-02 18:57:38 -04:00
Jan (janneke) Nieuwenhuizen 6b588da368
gnu: mes: Update to 0.24. 
* gnu/packages/mes.scm (mes-next)[source]: Update to 0.24.
[native-inputs]: Add m2-planet.
 2022-05-02 19:07:06 +02:00
Jan (janneke) Nieuwenhuizen c14f1e3195
gnu: m2-planet: Update to 1.9.0. 
* gnu/packages/mes.scm (m2-planet): Update to 1.9.0.
 2022-05-02 19:07:04 +02:00
Jan (janneke) Nieuwenhuizen 954ff74bc8
gnu: mescc-tools: Update to 1.4.0. 
* gnu/packages/mes.scm (mescc-tools): Update to 1.4.0.
 2022-05-02 19:07:02 +02:00
Konstantinos Agiannis f49b1a10f3
gnu: Add xschem. 
* gnu/packages/engineering.scm (xschem): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 18:03:06 +02:00
Ludovic Courtès 2a37f174be
services: Make sure Shepherd destructors match constructors. 
This is a followup to b06ecc5751,
211fe3f66e, and
fd57ce267c.

* gnu/services/base.scm (guix-publish-shepherd-service): Change 'stop'
method to use 'make-systemd-destructor' when 'make-systemd-constructor'
is used.
* gnu/services/dict.scm (dicod-shepherd-service): Change 'stop' method
to use 'make-inetd-destructor' when 'make-inetd-constructor' is used.
* gnu/services/messaging.scm (bitlbee-shepherd-service): Likewise.
 2022-05-02 17:57:30 +02:00
Ricardo Wurmus 39d6c13fda
gnu: python-hic2cool: Fix build. 
* gnu/packages/bioinformatics.scm (python-hic2cool)[arguments]: Fix
incompatibility with h5py 3; disable two tests.
 2022-05-02 17:33:31 +02:00
Mădălin Ionel Patrașcu 7494f4b4ab
gnu: Add r-agimicrorna. 
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-02 15:23:50 +02:00
Mădălin Ionel Patrașcu 9c19db8c1d
gnu: Add r-adductomicsr. 
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu 495bc9f962
gnu: Add r-orgmassspecr. 
* gnu/packages/cran.scm (r-orgmassspecr): New variable.
 2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu 290934c8fc
gnu: Add r-adductdata. 
* gnu/packages/bioconductor.scm (r-adductdata): New variable.
 2022-05-02 15:17:28 +02:00
Felix Gruber f455c1e313
gnu: Add python-scrapy. 
* gnu/packages/python-web.scm (python-scrapy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:46 +02:00
Felix Gruber d9a7f652e2
gnu: Add python-itemloaders. 
* gnu/packages/python-xyz.scm (python-itemloaders): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:46 +02:00
Felix Gruber 76b6337650
gnu: Add python-parsel. 
* gnu/packages/python-web.scm (python-parsel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:46 +02:00
Felix Gruber d219d48cce
gnu: Add python-protego. 
* gnu/packages/python-web.scm (python-protego): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:46 +02:00
Felix Gruber c0c16d6b84
gnu: Add python-itemadapter. 
* gnu/packages/python-xyz.scm (python-itemadapter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Felix Gruber fce913281f
gnu: Add python-queuelib. 
* gnu/packages/python-xyz.scm (python-queuelib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Felix Gruber f728d1dcd2
gnu: Add python-pydispatcher. 
* gnu/packages/python-xyz.scm (python-pydispatcher): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Felix Gruber 919fdd6fcc
gnu: Add python-sybil. 
* gnu/packages/python-check.scm (python-sybil): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Greg Hogan 8ffd8fc64e
gnu: bear: Update to 3.0.19. 
* gnu/packages/build-tools.scm (bear): Update to 3.0.19.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Greg Hogan 9bf9da2571
gnu: spdlog: Update to 1.10.0. 
* gnu/packages/logging.scm (spdlog): Update to 1.10.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Greg Hogan c152174ca2
gnu: fmt: Update to 8.1.1. 
* gnu/packages/pretty-print.scm (fmt): Update to 8.1.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Paul A. Patience 67b10f18c7
gnu: apl: Use G-expressions. 
* gnu/packages/apl.scm (apl)[arguments]: Use G-expressions.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Paul A. Patience fe6ba5e902
gnu: apl: Remove input labels. 
* gnu/packages/apl.scm (apl)[inputs]: Remove labels and sort.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Paul A. Patience 94b1905580
gnu: apl: Update to 1.8-r1550. 
This commit fixes a failing build caused by -Werror (the configure
script no longer sets the -Werror compilation flag).

* gnu/packages/apl.scm (apl): Update to 1.8-r1550.
[arguments]: Add 'fix-configure' phase.
[license]: Prefix with 'license:'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Niklas Eklund 35e5d2ce56
gnu: Add emacs-git-email. 
* gnu/packages/emacs-xyz.scm (emacs-git-email): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
kiasoc5 75b7f495d0
gnu: ugrep: Update to 3.7.9. 
* gnu/packages/search.scm (ugrep): Update to 3.7.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Greg Hogan a8fde99e80
gnu: aws-sdk-cpp: Remove openssl input. 
* gnu/packages/cpp.scm (aws-sdk-cpp):
[inputs]: Remove openssl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan af856afb6c
gnu: s2n: Link to aws-lc as libcrypto dependency. 
* gnu/packages/tls.scm (s2n):
[arguments]: Fix for openssl as replacement input for aws-lc.
[propagated-inputs]: Add aws-lc and remove openssl.
[supported-systems]: Only support x86_64-linux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan a5a408c3a7
gnu: aws-lc: Fix checksum and enable tests. 
* gnu/packages/tls.scm (aws-lc):
[source]: Fix checksum.
[arguments]: Enable tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan fec71efeae
gnu: aws-crt-cpp: Fix comment formatting. 
* gnu/packages/cpp.scm (aws-crt-cpp): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan a822f3e2d0
gnu: aws-c-mqtt: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-mqtt): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan b62d4872ba
gnu: aws-c-s3: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-s3): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan d62c101991
gnu: aws-c-auth: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-auth): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan b8c4bb3e0d
gnu: aws-c-compression: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-compression): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan d7c8a83549
gnu: aws-c-http: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-http): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan e8f2855d73
gnu: aws-c-sdkutils: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-sdkutils): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan c7805de435
gnu: aws-c-cal: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-cal): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan d230c67068
gnu: aws-c-io: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-io): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan 4dbb1520e2
gnu: aws-c-event-stream: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-event-stream): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan a9b4d69c9c
gnu: aws-checksums: Fix comment formatting. 
* gnu/packages/c.scm (aws-checksums): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan acbf5b1022
gnu: aws-c-common: Only support i686 and x86_64. 
* gnu/packages/c.scm (aws-c-common):
[supported-systems]: Only support i686-linux and x86_64-linux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:41 +02:00
Ludovic Courtès 6075d25143
services: bitlbee: Preserve 'PURPLE_PLUGIN_PATH'. 
Fixes a regression introduced in
211fe3f66e whereby, in inetd mode, and
when using 'bitlbee-purple', libpurple plugins would not be found.

* gnu/services/messaging.scm (bitlbee-shepherd-service): Pass
 #:preserved-environment-variables to 'least-authority-wrapper'.
 2022-05-02 15:14:41 +02:00
Ricardo Wurmus b1dd32d8e3
gnu: htslib-for-stringtie: Inherit from htslib-1.12. 
* gnu/packages/bioinformatics.scm (htslib-for-stringtie): Inherit from
htslib-1.12.
 2022-05-02 14:35:26 +02:00
Ricardo Wurmus 4571b218b5
gnu: Remove python-xlrd-1. 
* gnu/packages/python-xyz.scm (python-xlrd-1): Remove variable.
 2022-05-02 13:49:57 +02:00
Ricardo Wurmus 4642a50d52
gnu: Remove python-cytoolz-for-cooler. 
* gnu/packages/python-xyz.scm (python-cytoolz-for-cooler): Remove variable.
 2022-05-02 13:35:03 +02:00
Ricardo Wurmus 5caad9f252
gnu: python-cooler: Use more recent cytoolz. 
* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace
python-cytoolz-for-cooler with python-cytoolz.
 2022-05-02 13:33:16 +02:00
Ricardo Wurmus 9dafaf1635
gnu: python-anndata: Remove python-xlrd-1. 
* gnu/packages/python-xyz.scm (python-anndata)[propagated-inputs]: Remove
python-xlrd-1.
 2022-05-02 12:39:02 +02:00
Marius Bakke 098f2eea33
gnu: ungoogled-chromium: Update to 101.0.4951.41-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Include bundled
Vulkan headers.
(%chromium-version): Set to 101.0.4951.41.
(%debian-revision): Set to debian/101.0.4951.41-2.
(%debian-patches): Add one new patch.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
* gnu/packages/patches/ungoogled-chromium-system-nspr.patch: Refresh.
 2022-05-01 22:28:31 +02:00
Ludovic Courtès fee06d5aaa
services: opendht: Use 'least-authority-wrapper'. 
* gnu/services/networking.scm (opendht-configuration->command-line-arguments):
Use 'least-authority-wrapper'.
(opendht-shepherd-service): Use 'make-forkexec-constructor'.
 2022-05-01 21:30:36 +02:00
Ludovic Courtès dac4efc466
services: quassel: Use 'least-authority-wrapper'. 
* gnu/services/messaging.scm (quassel-shepherd-service): Use
'least-authority-wrapper' instead of
'make-forkexec-constructor/container'.
 2022-05-01 21:30:36 +02:00
Ludovic Courtès 53dbc6fd9a
services: wesnothd: Use 'least-authority-wrapper'. 
* gnu/services/games.scm (wesnothd-shepherd-service): Use
'least-authority-wrapper' instead of
'make-forkexec-constructor/container'.
 2022-05-01 21:30:36 +02:00
Ludovic Courtès 19df5f2423
services: wesnothd: Grant write access to /var/run/wesnothd. 
* gnu/services/games.scm (wesnothd-shepherd-service): Augment 'modules'
field.  Pass #:mappings argument to 'make-forkexec-constructor/container'.
(wesnothd-activation): New variable.
(wesnothd-service-type): Extend ACTIVATION-SERVICE-TYPE.
 2022-05-01 21:30:36 +02:00
Ludovic Courtès f5ef68ba98
services: ipfs: Use 'least-authority-wrapper'. 
* gnu/services/networking.scm (ipfs-binary): Call
'least-authority-wrapper'.
(%ipfs-home-mapping): Remove surrounding gexp.
(ipfs-shepherd-service)[exec-command]: New procedure.
[ipfs-config-command, set-config!-gexp, shepherd&co]
[container-gexp, container-script]: Remove.
[inner-gexp]: Use 'exec-command'.
 2022-05-01 21:30:35 +02:00
Ludovic Courtès 211fe3f66e
services: bitlbee: Use 'make-inetd-constructor'. 
* gnu/services/messaging.scm (bitlbee-shepherd-service): Add call to
'least-authority-wrapper'.  In 'start' method, use
'make-inetd-constructor' when available.
* gnu/tests/messaging.scm (run-bitlbee-test)["valid PID"]: Remove test.
 2022-05-01 21:30:35 +02:00
Ludovic Courtès fd57ce267c
services: dicod: Use 'make-inetd-constructor'. 
* gnu/services/dict.scm (dicod-shepherd-service): Use
'make-inetd-constructor' in the 'start' method when available.
 2022-05-01 21:30:35 +02:00
Ludovic Courtès 002bcb7eb0
services: dicod: Rewrite using 'least-authority-wrapper'. 
* gnu/services/dict.scm (dicod-shepherd-service): Rewrite using
'least-authority-wrapper' plus 'make-forkexec-constructor' instead of
'make-forkexec-constructor/container'.
 2022-05-01 21:30:35 +02:00
Ludovic Courtès 3682bd4003
Add (guix least-authority). 
* guix/least-authority.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/build/shepherd.scm (default-mounts): Make public.
 2022-05-01 21:30:35 +02:00
Ludovic Courtès 391bd14359
linux-container: Add #:child-is-pid1? parameter to 'call-with-container'. 
* gnu/build/linux-container.scm (wait-child-process)
(status->exit-status): New procedures.
(call-with-container): Add #:child-is-pid1? parameter and honor it.
[thunk*]: New variable.  Pass it to 'run-container'.
 2022-05-01 21:30:35 +02:00
Ludovic Courtès f6c9763984
linux-container: Ensure signal-handling asyncs get a chance to run. 
Previously we could enter the blocking 'waitpid' call and miss an
opportunity to run the signal handler async.

* gnu/build/linux-container.scm (call-with-container)
[periodically-schedule-asyncs]: New procedure.
[install-signal-handlers]: Call it.
 2022-05-01 21:30:35 +02:00
Ludovic Courtès a76fa226c8
linux-container: 'call-with-container' relays SIGTERM and SIGINT. 
* gnu/build/linux-container.scm (call-with-container): Add #:relayed-signals.
[install-signal-handlers]: New procedure.
Call it.
 2022-05-01 21:30:34 +02:00
Ludovic Courtès eaebc7f2b7
file-systems: Avoid load-time warnings when attempting to load (guix store). 
This makes sure warnings like "incompatible bytecode version" don't go
through when looking for (guix store).

* gnu/system/file-systems.scm (%store-prefix): Parameterize
'current-warning-port' around 'resolve-module' call.
 2022-05-01 21:30:34 +02:00
Ludovic Courtès 774f8804ba
gexp: Add 'references-file'. 
* gnu/services/base.scm (references-file): Remove.
* guix/gexp.scm (references-file): New procedure.
* tests/gexp.scm ("references-file"): New test.
 2022-05-01 21:30:34 +02:00
Julien Lepiller 674124b1ed
gnu: ocaml-uuidm: Update to 0.9.8. 
* gnu/packages/ocaml.scm (ocaml-uuidm): Update to 0.9.8.
(ocaml4.07-uuidm): New variable.
 2022-05-01 17:05:58 +02:00
Julien Lepiller c34ac580dc
gnu: ocamlformat: Update to 0.21.0. 
* gnu/packages/ocaml.scm (ocamlformat): Update to 0.21.0.
 2022-05-01 17:03:46 +02:00
Julien Lepiller e719135a57
gnu: ocaml-cmdliner: Update to 1.1.0. 
Cmdliner changed its output format, so two packages need to be modified
to accept the new format.

The patch modifies ocaml 4.07 packages to ensure this patch results in the
same derivations for these variants.

* gnu/packages/ocaml.scm (ocaml-cmdliner): Update to 1.1.0.
(ocaml-alcotest, ocaml-mdx)[arguments]: Fix tests.
(ocaml4.07-cmdliner): New variable.
(ocaml4.07-alcotest): Do not fix tests.
 2022-05-01 17:03:02 +02:00
Julien Lepiller 3d5d09abb8
gnu: ocaml-re: Update to 1.10.4. 
* gnu/packages/ocaml.scm (ocaml-re): Update to 1.10.4.
 2022-05-01 13:14:59 +02:00
Julien Lepiller be83b59d31
gnu: ocaml-spawn: Update to 0.15.1. 
* gnu/packages/ocaml.scm (ocaml-spawn): Update to 0.15.1.
 2022-05-01 13:14:59 +02:00
Julien Lepiller a342c32cd5
gnu: ocaml-ppx-fields-conv: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-fields-conv): Update to 0.15.0.
 2022-05-01 13:14:59 +02:00
Julien Lepiller 6d97a08525
gnu: ocaml-parsexp: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-parsexp): Update to 0.15.0.
 2022-05-01 13:14:59 +02:00
Julien Lepiller 88ee602039
gnu: ocaml-ppx-hash: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-hash): Update to 0.15.0.
 2022-05-01 13:14:58 +02:00
Julien Lepiller db20b6c133
gnu: ocaml-ppx-sexp-value: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-value): Update to 0.15.0.
 2022-05-01 13:14:58 +02:00
Julien Lepiller 4ce554c6da
gnu: ocaml-jst-config: Update to 0.15.1. 
* gnu/packages/ocaml.scm (ocaml-jst-config): Update to 0.15.1.
 2022-05-01 13:14:58 +02:00
Julien Lepiller ae08819ca5
gnu: ocaml-ppx-stable: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-stable): Update to 0.15.0.
 2022-05-01 13:14:58 +02:00
Julien Lepiller 85b23e64e2
gnu: ocaml-ppx-base: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-base): Update to 0.15.0.
 2022-05-01 13:14:58 +02:00
Julien Lepiller 72ca35c539
gnu: ocaml-ppx-compare: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-compare): Update to 0.15.0.
 2022-05-01 13:14:58 +02:00
Julien Lepiller d1a4653bf6
gnu: ocaml-jane-street-headers: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-jane-street-headers): Update to 0.15.0.
 2022-05-01 13:14:58 +02:00
Julien Lepiller 0cea8f99aa
gnu: ocaml-base-bigstring: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-base-bigstring): Update to 0.15.0.
 2022-05-01 13:14:57 +02:00
Julien Lepiller 4fe2489816
gnu: ocaml-core: Update to 0.15.0. 
These packages cannot be updated individually.

* gnu/packages/ocaml.scm (ocaml-ppx-inline-test, ocaml-sexplib0)
(ocaml-sexplib, ocaml-base, ocaml-stdio, ocaml-ppx-sexp-conv)
(ocaml-ppx-expect, ocaml-base-quickcheck, ocaml-core)
(ocaml-core-kernel, ocaml-timezone): Update to 0.15.0.
(ocaml-ppxlib): Fix tests.
(ocaml-int-repr): New variable.
 2022-05-01 13:14:57 +02:00
Julien Lepiller e8a3a1d279
gnu: ocaml-ppxlib: Update to 0.25.0. 
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.25.0.
 2022-05-01 13:14:57 +02:00
Julien Lepiller 556ccb4ae1
gnu: coq: Update to 8.15.1. 
* gnu/packages/coq.scm (coq): Update to 8.15.1.
 2022-05-01 13:14:57 +02:00
Julien Lepiller b27a2366ab
gnu: ocaml-hex: Update to 1.5.0. 
* gnu/packages/ocaml.scm (ocaml-hex): Update to 1.5.0.
 2022-05-01 13:14:57 +02:00
Julien Lepiller ab8d68cadd
gnu: ocaml-easy-format: Update to 1.3.3. 
* gnu/packages/ocaml.scm (ocaml-easy-format): Update to 1.3.3.
 2022-05-01 13:14:57 +02:00
Julien Lepiller cda4ca0ab5
gnu: ocaml-variantslib: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-variantslib): Update to 0.15.0.
 2022-05-01 13:14:56 +02:00
Julien Lepiller f076cdba02
gnu: ocaml-ppx-optcomp: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-optcomp): Update to 0.15.0.
 2022-05-01 13:14:56 +02:00
Julien Lepiller ffdd749ad5
gnu: ocaml-cstruct: Update to 6.1.0. 
* gnu/packages/ocaml.scm (ocaml-cstruct): Update to 6.1.0.
 2022-05-01 13:14:56 +02:00
Julien Lepiller ae7c2c4b16
gnu: ocaml-ppx-bin-prot: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-bin-prot): Update to 0.15.0.
 2022-05-01 13:14:56 +02:00
Julien Lepiller 143b9d3a3d
gnu: ocaml-ppx-jane: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-jane): Update to 0.15.0.
 2022-05-01 13:14:56 +02:00
Julien Lepiller 564a310065
gnu: Add ocaml-ppx-disable-unused-warnings. 
* gnu/packages/ocaml.scm (ocaml-ppx-disable-unused-warnings): New
  variable.
 2022-05-01 13:14:56 +02:00
Julien Lepiller 823005c6a3
gnu: Add ocaml-ppx-log. 
* gnu/packages/ocaml.scm (ocaml-ppx-log): New variable.
 2022-05-01 13:14:56 +02:00
Julien Lepiller 044b42720d
gnu: Add ocaml-ppx-ignore-instrumentation. 
* gnu/packages/ocaml.scm (ocaml-ppx-ignore-instrumentation): New
  variable.
 2022-05-01 13:14:55 +02:00
Julien Lepiller a9e8b6e7a2
gnu: ocaml-opam-file-format: Update to 2.1.4. 
* gnu/packages/ocaml.scm (ocaml-opam-file-format): Update to 2.1.4.
 2022-05-01 13:14:55 +02:00
Julien Lepiller 43b95fbe7a
gnu: ocaml-ctypes: Update to 0.20.1. 
* gnu/packages/ocaml.scm (ocaml-ctypes): Update to 0.20.1.
 2022-05-01 13:14:55 +02:00
Julien Lepiller 2708cece85
gnu: ocaml-integers: Update to 0.7.0. 
* gnu/packages/ocaml.scm (ocaml-integers): Update to 0.7.0.
 2022-05-01 13:14:55 +02:00
Julien Lepiller 6abb5fe8a9
gnu: ocaml-ppx-bench: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-bench): Update to 0.15.0.
 2022-05-01 13:14:55 +02:00
Julien Lepiller 25a027b949
gnu: dune: Update to 3.1.1. 
* gnu/packages/ocaml.scm (dune): Update to 3.1.1.
 2022-05-01 13:14:55 +02:00
Julien Lepiller 20c090e572
gnu: ocaml-ppx-pipebang: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-pipebang): Update to 0.15.0.
 2022-05-01 13:14:55 +02:00
Julien Lepiller 26e3face3d
gnu: ocaml-ppx-custom-printf: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-custom-printf): Update to 0.15.0.
 2022-05-01 13:14:54 +02:00
Julien Lepiller b45833f512
gnu: ocaml-ppx-module-timer: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-module-timer): Update to 0.15.0.
 2022-05-01 13:14:54 +02:00
Julien Lepiller 0fe56e5bb2
gnu: ocaml-ppx-let: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-let): Update to 0.15.0.
 2022-05-01 13:14:54 +02:00
Julien Lepiller c49e0ef477
gnu: ocaml-ppx-variants-conv: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): Update to 0.15.0.
 2022-05-01 13:14:54 +02:00
Julien Lepiller 3e9c40158a
gnu: ocaml-utop: Update to 2.9.1. 
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.9.1.
 2022-05-01 13:14:54 +02:00
Julien Lepiller 217180c1f3
gnu: ocaml-bisect-ppx: Update to 2.8.1. 
* gnu/packages/ocaml.scm (ocaml-bisect-ppx): Update to 2.8.1.
 2022-05-01 13:14:54 +02:00
Julien Lepiller fe940507b1
gnu: ocaml-ppx-typerep-conv: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): Update to 0.15.0.
 2022-05-01 13:14:53 +02:00
Julien Lepiller bbdf8dacbf
gnu: ocaml-typerep: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-typerep): Update to 0.15.0.
 2022-05-01 13:14:53 +02:00
Julien Lepiller 2fd97d5a05
gnu: ocaml-fieldslib: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-fieldslib): Update to 0.15.0.
 2022-05-01 13:14:53 +02:00
Julien Lepiller c87661143a
gnu: ocaml-ppx-fixed-literal: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-fixed-literal): Update to 0.15.0.
 2022-05-01 13:14:53 +02:00
Julien Lepiller d1f604c20f
gnu: ocaml-splittable-random: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-splittable-random): Update to 0.15.0.
 2022-05-01 13:14:53 +02:00
Julien Lepiller 6514485998
gnu: ocaml-bigstringaf: Update to 0.9.0. 
* gnu/packages/ocaml.scm (ocaml-bigstringaf): Update to 0.9.0.
 2022-05-01 13:14:53 +02:00
Julien Lepiller 1383cf4b3a
gnu: ocaml-markup: Update to 1.0.3. 
* gnu/packages/ocaml.scm (ocaml-markup): Update to 1.0.3.
 2022-05-01 13:14:53 +02:00
Julien Lepiller 59ec6c00b0
gnu: ocaml-time-now: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-time-now): Update to 0.15.0.
 2022-05-01 13:14:52 +02:00
Julien Lepiller dd35fdf651
gnu: ocaml-bin-prot: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-bin-prot): Update to 0.15.0.
 2022-05-01 13:14:52 +02:00
Julien Lepiller 7678b531a0
gnu: ocaml-ppx-here: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-here): Update to 0.15.0.
 2022-05-01 13:14:52 +02:00
Julien Lepiller f01e73eac9
gnu: ocaml-ppx-js-style: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-js-style): Update to 0.15.0.
 2022-05-01 13:14:52 +02:00
Julien Lepiller 2a528d96a0
gnu: ocaml-ppx-cold: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-cold): Update to 0.15.0.
 2022-05-01 13:14:52 +02:00
Julien Lepiller 19972e112c
gnu: ocaml-ppx-assert: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-assert): Update to 0.15.0.
 2022-05-01 13:14:52 +02:00
Julien Lepiller ad3f1faad6
gnu: ocaml-ppx-optional: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-optional): Update to 0.15.0.
 2022-05-01 13:14:51 +02:00
Julien Lepiller bbdc69dcd1
gnu: ocaml-ppx-enumerate: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): Update to 0.15.0.
 2022-05-01 13:14:51 +02:00
Julien Lepiller cd19c36509
gnu: ocaml-ppx-string: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-string): Update to 0.15.0.
 2022-05-01 13:14:51 +02:00
Julien Lepiller bff4199e9b
gnu: ocaml-ppx-sexp-message: Update to 0.15.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-message): Update to 0.15.0.
 2022-05-01 13:14:35 +02:00
Mathieu Othacehe 7b9ee58925
tests: Fix tailon test. 
This is a follow-up of 73eeeeafbb.

* gnu/tests/web.scm (run-tailon-test): Wait for the TCP port 8080 instead of
relying on start-service.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-05-01 12:53:53 +02:00
Mathieu Othacehe b47aae7f85
gnu: tailon: Update to 1.4.3. 
* gnu/packages/logging.scm (tailon): Update to 1.4.3.
[native-inputs]: Add python-tox, python-wheel.
[inputs]: Use python-pyyaml-5 instead of python-pyyaml.
Relax tornado version requirement.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-05-01 12:51:53 +02:00
Mathieu Othacehe 33366f196e
gnu: Add python-deepmerge. 
* gnu/packages/python-xyz.scm (python-deepmerge): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-05-01 12:49:32 +02:00
Julien Lepiller c026db3f46
gnu: ocaml: Update to 4.14. 
* gnu/packages/ocaml.scm (ocaml-4.14): New variable.
(ocaml-4.13): Remove variable.
(ocaml-down): Update to 0.1.0.
(js-of-ocaml)[arguments]: Disable tests.
 2022-04-30 18:01:03 +02:00
Julien Lepiller 39e88fa2c8
gnu: ocaml-dot-merlin: Update to 4.5-414. 
* gnu/packages/ocaml.scm (ocaml-dot-merlin): Update to 4.5.414.
 2022-04-30 18:00:58 +02:00
Julien Lepiller d0da63c576
gnu: ocaml-num: Fix race condition. 
* gnu/packages/ocaml.scm (ocaml-num)[arguments]: Fix race condition.
 2022-04-30 18:00:43 +02:00
Julien Lepiller 3ee7e8c5b9
gnu: camlp5: Update to 8.00.03. 
* gnu/packages/ocaml.scm (camlp5): Update to 8.00.03.
 2022-04-30 18:00:34 +02:00
Julien Lepiller fbcd25f5ef
gnu: Add ocaml-camlp-streams. 
* gnu/packages/ocaml.scm (ocaml-camlp-streams): New variable.
 2022-04-30 17:59:41 +02:00
zamfofex 0a64b629ae
gnu: Add Liquid War 6. 
* gnu/packages/games.scm (liquidwar6): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 23:14:45 +02:00
Ludovic Courtès b06ecc5751
services: guix-publish: Use socket activation when possible. 
* gnu/services/base.scm (guix-publish-shepherd-service): Use
'make-systemd-constructor' when it's available and ADVERTISE? is false.
 2022-04-29 22:59:08 +02:00
Ludovic Courtès 9eca13094d
gnu: guix: Update to c1719a0. 
* gnu/packages/package-management.scm (guix): Update to c1719a0.
 2022-04-29 22:59:07 +02:00
Navid Afkhami ca831dfa09
gnu: Add r-zlog. 
* gnu/packages/cran.scm (r-zlog): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-29 18:25:30 +02:00
Navid 325d53d5f6
gnu: Add r-afpt. 
* gnu/packages/cran.scm (r-afpt): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-29 18:14:37 +02:00
Ludovic Courtès 73eeeeafbb
tests: Avoid starting services to check whether they're running. 
Fixes a regression introduced in the Shepherd 0.9.0 whereby clients can
start a service that is already being started, leading to two instances
of the process (and usually failure of the second attempt to start it).

Partly fixes <https://issues.guix.gnu.org/54786>.
Reported by Mathieu Othacehe.

* gnu/tests/version-control.scm (run-cgit-test)
["nginx running", "fcgiwrap running"]: Wail for a file/TCP port instead
of starting the service.
(run-git-http-test)["nginx running"]: Likewise.
(run-gitile-test)["nginx running"]: Likewise.
 2022-04-29 18:07:17 +02:00
Peter Polidoro 1bb177d084
gnu: Add python-flatten-json. 
* gnu/packages/python-xyz.scm (python-flatten-json): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 18:07:17 +02:00
Petr Hodina 6ce8d9be43
gnu: Add envytools. 
* gnu/packages/hardware.scm (envytools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 18:07:16 +02:00
Andrew Tropin 606ba14480
gnu: zsh: Build and install info pages. 
* gnu/packages/shells.scm (zsh)[arguments]: Add 'make-info' and
'install-info' phases.
[native-inputs]: Add TEXINFO.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 18:07:16 +02:00
John Kehayias ccd682cb98
gnu: lensfun: Update to 0.3.3. 
* gnu/packages/photo.scm (lensfun): Update to 0.3.3.
[source, homepage]: Update URLs as the project has moved.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 18:07:16 +02:00
Bastien Rivière 2c408520f5
home: shells: Migrate fish to xdg-configuration-files. 
* gnu/home/services/shells.scm (home-fish-service-type): Use new
xdg-configuration-files-service-type service.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 18:07:16 +02:00
Ludovic Courtès 9d7248cd87
services: Add missing 'description' fields. 
* gnu/services/databases.scm (postgresql-service-type)[description]: New field.
(memcached-service-type)[description]: New field.
(mysql-service-type)[description]: New field.
(redis-service-type)[description]: New field.
* gnu/services/desktop.scm (geoclue-service-type)[description]: New
field.
(udisks-service-type)[description]: New field.
(elogind-service-type)[description]: New field.
(account-service-type)[description]: New field.
* gnu/services/kerberos.scm (krb5-service-type)[description]: New field.
(pam-krb5-service-type)[description]: New field.
* gnu/services/lirc.scm (lirc-service-type)[description]: New field.
* gnu/services/mail.scm (dovecot-service-type)[description]: New field.
(opensmtpd-service-type)[description]: New field.
(mail-aliases-service-type)[description]: New field.
(exim-service-type)[description]: New field.
* gnu/services/monitoring.scm (zabbix-server-service-type)[description]:
New field.
(zabbix-agent-service-type)[description]: New field.
* gnu/services/nfs.scm (rpcbind-service-type)[description]: New field.
(pipefs-service-type)[description]: New field.
(gss-service-type)[description]: New field.
(idmap-service-type)[description]: New field.
* gnu/services/spice.scm (spice-vdagent-service-type)[description]: New field.
* gnu/services/sysctl.scm (sysctl-service-type)[description]: New field.
* gnu/services/virtualization.scm (libvirt-service-type)[description]:
New field.
(virtlog-service-type)[description]: New field.
* gnu/services/vpn.scm (openvpn-server-service-type)[description]: New field.
(openvpn-client-service-type)[description]: New field.
(wireguard-service-type)[description]: New field.
* gnu/services/web.scm (httpd-service-type)[description]: New field.
(fcgiwrap-service-type)[description]: New field.
(agate-service-type)[description]: New field.
[name]: Fix.
 2022-04-29 18:07:16 +02:00
Pier-Hugues Pellerin 65e3de5cce
gnu: go: Update to 1.17.9. 
go 1.17.9 (released 2022-04-12) includes security fixes to the
crypto/elliptic and encoding/pem packages, as well as bug fixes to
the linker and runtime.

* gnu/packages/golang.scm (go-1.17): Update to 1.17.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 14:57:03 +02:00
Guillaume Le Vaillant 653eef9b41
gnu: Add urh. 
* gnu/packages/radio.scm (urh): New variable.

Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
 2022-04-29 14:36:37 +02:00
Efraim Flashner 03f660027c
gnu: font-gnu-unifont: Update to 14.0.03. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 14.0.03.
 2022-04-29 02:55:05 +03:00
Ludovic Courtès 391dc96529
gnu: rust-pyo3: Allow compilation with Criterion 0.3.5. 
Fixes a regression introduced in
2703daf6eb.

* gnu/packages/crates-io.scm (rust-pyo3-0.15)[modules, snippet]: New
fields.
 2022-04-29 01:04:24 +02:00
Zhu Zihao 10ff74d397
gnu: bubblewrap: Update to 0.6.1. 
* gnu/packages/virtualization.scm (bubblewrap): Update to 0.6.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 01:04:24 +02:00
Efraim Flashner c00906b1dd
gnu: gama: Update to 2.19. 
* gnu/packages/gps.scm (gama): Update to 2.19.
 2022-04-29 01:47:48 +03:00
Pier-Hugues Pellerin 313ae43f51
gnu: Add Avizo. 
* gnu/packages/wm.scm (avizo): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 00:42:08 +02:00
Alexey Abramov 4d3c142e0b
gnu: openssh: Trust Guix store directory 
* gnu/local.mk (dist_patch_DATA): Add the patch
* gnu/packages/patches/openssh-trust-guix-store-directory.patch: Patch it
* gnu/packages/ssh.scm (openssh[source]): Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 00:33:53 +02:00
Maya f2eb0d3922
home: services: fish: Fix incorrect ".config" file name. 
This is a followup to 5832d9fb60.

* gnu/home/services/shells.scm (fish-files-service): Change "config/"
to ".config/".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-29 00:33:45 +02:00
Ludovic Courtès 09fcd191e1
gnu: rust-pyo3: Allow compilation with Criterion 0.3.5. 
Fixes a regression introduced in
2703daf6eb.

* gnu/packages/crates-io.scm (rust-pyo3-0.15)[modules, snippet]: New
fields.
 2022-04-28 23:54:59 +02:00
Efraim Flashner d57ec0a303
gnu: imlib2: Remove input labels. 
* gnu/packages/image.scm (imlib2)[native-inputs]: Remove input labels.
[inputs]: Same.
 2022-04-28 23:33:44 +03:00
Efraim Flashner 53c0619559
gnu: imlib2: Update to 1.9.0. 
* gnu/packages/image.scm (imlib2): Update to 1.9.0.
 2022-04-28 23:32:04 +03:00
Zhu Zihao f785299af1
gnu: flatpak: Do not leak GDK_PIXBUF_MODULE_FILE into the sandbox. 
Fixes <https://issues.guix.gnu.org/54784>.

* gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add corresponding entry.
* gnu/packages/package-management.scm (flatpak)[source]: Use patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-28 16:49:08 +02:00
Zhu Zihao b01622f57d
gnu: flatpak: Use G-expressions. 
* gnu/packages/package-management.scm (flatpak): Fix indentation.
[arguments]: Use G-expressions.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-28 16:48:32 +02:00
Ludovic Courtès 284fa72649
Merge branch 'master' into staging 2022-04-28 16:24:46 +02:00
Ricardo Wurmus 882cacc1bb
gnu: Add r-guix-install. 
* gnu/packages/cran.scm (r-guix-install): New variable.
 2022-04-28 11:11:16 +02:00
jgart f1d08be7af
gnu: mercury: Selectively import match-lambda from ice9 module. 
* gnu/packages/mercury.scm (mercury): Use #:select instead of a
comment string for importing match-lambda.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-04-27 22:34:35 -04:00
Leo Famulari a814b8ff9c
gnu: linux-libre 4.9: Update to 4.9.312. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.312.
(linux-libre-4.9-pristine-source): Update hash.
 2022-04-27 21:19:55 -04:00
Leo Famulari fe5f27c127
gnu: linux-libre 4.14: Update to 4.14.277. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.277.
(linux-libre-4.14-pristine-source): Update hash.
 2022-04-27 21:19:55 -04:00
Leo Famulari 5af06b95e2
gnu: linux-libre 4.19: Update to 4.19.240. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.240.
(linux-libre-4.19-pristine-source): Update hash.
 2022-04-27 21:19:55 -04:00
Leo Famulari bd2e507f44
gnu: linux-libre 5.4: Update to 5.4.191. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.191.
(linux-libre-5.4-pristine-source): Update hash.
 2022-04-27 21:19:55 -04:00
Leo Famulari 90334038f8
gnu: linux-libre 5.10: Update to 5.10.113. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.113.
(linux-libre-5.10-pristine-source): Update hash.
 2022-04-27 21:19:55 -04:00
Leo Famulari 43cb0d4064
gnu: linux-libre 5.15: Update to 5.15.36. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.36.
(linux-libre-5.15-pristine-source): Update hash.
 2022-04-27 21:19:54 -04:00
Leo Famulari e180b9bc5a
gnu: linux-libre: Update to 5.17.5. 
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.5.
(linux-libre-5.17-pristine-source): Update hash.
 2022-04-27 21:19:51 -04:00
zimoun 919a7412d3
gnu: conan: Use python-pyyaml@5. 
* gnu/packages/package-management.scm (conan)[propagated-inputs]: Replace
python-pyyaml by python-yyaml-5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-27 23:23:48 +02:00
zimoun 4ed48f587e
gnu: docker-compose: Use python-pyyaml@5. 
* gnu/packages/docker.scm (docker-compose)[inputs]: Replace python-pyyaml by
python-pyyaml-5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-27 23:23:44 +02:00
zimoun bf10421a67
gnu: python-pyyaml: Reintroduce 5.4. 
* gnu/packages/python-xyz.scm (python-pyyaml-5): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-27 23:22:43 +02:00
Wamm K. D ff12cf5e07
gnu: Add hyfetch. 
* gnu/packages/admin.scm (hyfetch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-27 23:18:37 +02:00
Wamm K. D 7ed87432e3
gnu: Add python-hypy-utils. 
* gnu/packages/python-xyz.scm (python-hypy-utils): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-27 23:15:51 +02:00