c96e41bd81
gnu: multimon-ng: Update to 1.2.0.
...
* gnu/packages/radio.scm (multimon-ng): Update to 1.2.0.
2022-12-14 18:23:58 +01:00
e2562d0408
gnu: rtl-433: Update to 22.11.
...
* gnu/packages/radio.scm (rtl-433): Update to 22.11.
2022-12-14 18:23:58 +01:00
181444e01c
gnu: dump1090 : Improve style.
...
* gnu/packages/radio.scm (dump1090)[arguments]: Use gexps.
2022-12-14 18:23:58 +01:00
c01b546d82
gnu: dump1090: Update to 8.2.
...
* gnu/packages/radio.scm (dump1090): Update to 8.2.
2022-12-14 18:23:58 +01:00
3796e8b422
gnu: xnec2c: Update to 4.4.12.
...
* gnu/packages/radio.scm (xnec2c): Update to 4.4.12.
2022-12-14 18:23:57 +01:00
9764b1bb72
gnu: gqrx: Update to 2.15.9.
...
* gnu/packages/radio.scm (gqrx): Update to 2.15.9.
2022-12-14 18:23:57 +01:00
3a5940b82c
gnu: soapyrtlsdr: Update to 0.3.3.
...
* gnu/packages/radio.scm (soapyrtlsdr): Update to 0.3.3.
2022-12-14 18:23:57 +01:00
d86c6cbd7b
gnu: soapyhackrf: Update to 0.3.4-1.6c0c33f.
...
* gnu/packages/radio.scm (soapyhackrf): Update to 0.3.4-1.6c0c33f.
2022-12-14 18:23:57 +01:00
d94f7a7b53
gnu: hackrf: Improve style.
...
* gnu/packages/radio.scm (hackrf)[source]: Use new URL.
[arguments]: Use gexps. Remove trailing booleans.
2022-12-14 18:23:57 +01:00
e5602a2747
gnu: hackrf: Update to 2022.09.1.
...
* gnu/packages/radio.scm (hackrf): Update to 2022.09.1.
2022-12-14 18:23:57 +01:00
2f707f9493
gnu: 389-ds-base: Update to 1.4.5.0.
...
* gnu/packages/openldap.scm (389-ds-base): Update to 1.4.5.0.
[source]: Fetch from git.
[arguments]: Remove unnecessary configure flags; update 'fix-references phase;
update 'overwrite-default-locations phase.
2022-12-14 17:19:06 +01:00
7885b5be9b
gnu: 389-ds-base: Drop input labels.
...
* gnu/packages/openldap.scm (389-ds-base)[inputs]: Drop labels.
[native-inputs]: Drop labels.
2022-12-14 17:19:06 +01:00
4a517a012f
gnu: libpqxx: Update to 7.7.4.
...
* gnu/packages/databases.scm (libpqxx): Update to 7.7.4.
2022-12-11 01:00:00 +01:00
404d228319
gnu: memcached: Update to 1.6.17.
...
* gnu/packages/databases.scm (memcached): Update to 1.6.17.
2022-12-11 01:00:00 +01:00
dbbca61bf0
gnu: nano: Update to 7.1.
...
* gnu/packages/nano.scm (nano): Update to 7.1.
2022-12-11 01:00:00 +01:00
627c56f543
gnu: gulrak-filesystem: Update to 1.5.12.
...
* gnu/packages/cpp.scm (gulrak-filesystem): Update to 1.5.12.
2022-12-11 01:00:00 +01:00
1b6e251ed1
gnu: make-u-boot-package: Build verbosily.
...
* gnu/packages/bootloaders.scm (make-u-boot-package)
[arguments] <make-flags>: Add KBUILD_VERBOSE=1.
2022-12-14 10:38:54 -05:00
8125c22ea2
gnu: rasdaemon: Add missing inputs and rewrite using G-Exps.
...
* gnu/packages/linux.scm (rasdaemon)[arguments]: Rewrite using
G-Expressions. Add 'fix-dmidecode-and-modprobe' and 'wrap-rasdaemon'
phases.
[inputs]: Add perl-dbd-sqlite, dmidecode, and kmod.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-14 12:44:03 +01:00
acab89748d
gnu: Add aspell-dict-nb.
...
* gnu/packages/aspell.scm (aspell-dict-nb): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-14 12:44:02 +01:00
7e2b9dbe08
gnu: bolt: Update to 0.9.4.
...
* gnu/packages/linux.scm (bolt): Update to 0.9.4.
2022-12-14 12:44:02 +01:00
4eae37157f
gnu: Add bolt.
...
* gnu/packages/linux.scm (bolt): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-14 12:44:02 +01:00
a312bc9cd8
services: configuration: Remove orphan reference to example.
...
'generic-serialize-alist' refers to (gnu home services version-control)
for usage examples but there's no such module.
* gnu/services/configuration.scm (generic-serialize-alist): Adjust
docstring.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-14 12:44:02 +01:00
85dcea59f6
gnu: isc-dhcp: Update description.
...
* gnu/packages/admin.scm (isc-dhcp)[description]: Note EOL status.
2022-12-11 01:00:03 +01:00
34242fe5c7
gnu: isc-dhcp: Update to 4.4.3-P1 [fixes CVE-2022-2928, CVE-2022-2929].
...
* gnu/packages/admin.scm (isc-dhcp): Update to 4.4.3-P1.
2022-12-11 01:00:03 +01:00
b853dbd0e2
gnu: nmrpflash: Rephrase synopsis.
...
* gnu/packages/admin.scm (nmrpflash)[synopsis]: Rework awkward wording.
2022-12-11 01:00:02 +01:00
54e7efd5cf
gnu: nmrpflash: Update to 0.9.19.
...
* gnu/packages/admin.scm (nmrpflash): Update to 0.9.19.
2022-12-11 01:00:02 +01:00
2202fc9003
gnu: nnn: Update to 4.7.
...
* gnu/packages/admin.scm (nnn): Update to 4.7.
2022-12-11 01:00:02 +01:00
bd268c21e5
gnu: inxi-minimal: Reduce reliance on input names.
...
* gnu/packages/admin.scm (inxi-minimal)[arguments]:
Use SEARCH-INPUT-FILE.
2022-12-11 01:00:02 +01:00
932409da9c
gnu: inxi-minimal: Remove input labels.
...
* gnu/packages/admin.scm (inxi-minimal)[inputs]:
Remove input labels.
2022-12-11 01:00:02 +01:00
2dfc21d9ce
gnu: inxi-minimal: Update to 3.3.24-1.
...
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.24-1.
2022-12-11 01:00:02 +01:00
6c50e416a5
gnu: hyfetch: Update to 1.4.4.
...
* gnu/packages/admin.scm (hyfetch): Update to 1.4.4.
2022-12-11 01:00:02 +01:00
992773d3a2
gnu: dash: Capitalise description sentences.
...
* gnu/packages/shells.scm (dash)[description]: Capitalise ‘dash’.
2022-12-11 01:00:02 +01:00
55e2b9b0a4
gnu: dash: Update to 0.5.12.
...
* gnu/packages/shells.scm (dash): Update to 0.5.12.
[arguments]: Don't explicitly return #t from phases.
2022-12-11 01:00:01 +01:00
885903e2f6
gnu: botan: Update to 2.19.3.
...
* gnu/packages/crypto.scm (botan): Update to 2.19.3.
2022-12-11 01:00:01 +01:00
187880b814
gnu: global: Update to 6.6.9.
...
* gnu/packages/code.scm (global): Update to 6.6.9.
2022-12-11 01:00:01 +01:00
62cb0eae3e
gnu: libhx: Update to 4.8.
...
* gnu/packages/c.scm (libhx): Update to 4.8.
2022-12-11 01:00:01 +01:00
885f18d750
gnu: libdeflate: Update to 1.15.
...
* gnu/packages/compression.scm (libdeflate): Update to 1.15.
[build-system]: Use CMake.
[arguments]: Remove #:make-flags and all custom phases.
Add equivalent #:configure-flags and a custom 'check phase.
2022-12-11 01:00:01 +01:00
2ed751715f
gnu: python-aiounittest: Update to 1.4.2.
...
* gnu/packages/check.scm (python-aiounittest): Update to 1.4.2.
2022-12-11 01:00:01 +01:00
816c7f4e84
gnu: doctest: Update to 2.4.9.
...
* gnu/packages/check.scm (doctest): Update to 2.4.9.
2022-12-11 01:00:01 +01:00
039bef4ac8
gnu: ccache: Update to 4.7.4.
...
* gnu/packages/ccache.scm (ccache): Update to 4.7.4.
2022-12-11 01:00:00 +01:00
aceb4e49d1
gnu: byacc: Update to 20221106.
...
* gnu/packages/c.scm (byacc): Update to 20221106.
2022-12-11 01:00:00 +01:00
2b7b0cac71
gnu: fio: Update to 3.33.
...
* gnu/packages/benchmark.scm (fio): Update to 3.33.
2022-12-11 01:00:00 +01:00
930b94809d
gnu: libltc: Update to 1.3.2.
...
* gnu/packages/audio.scm (libltc): Update to 1.3.2.
2022-12-11 01:00:00 +01:00
b0913931e9
gnu: realmd: Update to 0.17.1.
...
* gnu/packages/admin.scm (realmd): Update to 0.17.1.
2022-12-11 01:00:00 +01:00
688028931f
gnu: emacs-pdf-tools: Update home page.
...
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools)[home-page]: Update.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13 21:31:28 +01:00
a67461f0e1
gnu: emacs-hyperbole: Add missing files.
...
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Add a new
INSTALL-DOC phase.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13 21:24:09 +01:00
7d570036f0
gnu: emacs-pg: Update to 0.20.
...
* gnu/packages/emacs-xyz.scm (emacs-pg): Update to 0.20.
2022-12-13 21:24:09 +01:00
c922d935c3
gnu: emacs-fountain-mode: Update to 3.6.1.
...
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.6.1.
2022-12-13 21:24:08 +01:00
98f7332aa8
gnu: emacs-debbugs: Update to 0.35.
...
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.35.
2022-12-13 21:24:08 +01:00
89795dec98
gnu: emacs-project: Update to 0.9.3.
...
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.9.3.
2022-12-13 21:24:08 +01:00
e4ab2ccb18
gnu: emacs-beancount: Update to 0.0.0-1.687775d.
...
* gnu/packages/finance.scm (emacs-beancount): Update to 0.0.0-1.687775d.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13 21:24:02 +01:00
d83eef22b2
gnu: icecat: Update to 102.6.0-guix0-preview1 [security fixes].
...
Includes fixes for CVE-2022-46872, CVE-2022-46874, CVE-2022-46875,
CVE-2022-46878, CVE-2022-46880, CVE-2022-46881, and CVE-2022-46882.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
2022-12-13 12:36:39 -05:00
3d2b2f12e5
gnu: bedops: Update to 2.4.41.
...
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.41.
[arguments]: Remove trailing #T from build phases; do not set BINDIR in
make-flags; set CC; replace 'install phase.
[native-inputs]: Add diffutils, perl, and which.
2022-12-13 18:22:55 +01:00
22acc0b029
services: nix: Add more configuration fields.
...
* gnu/services/nix.scm (<nix-configuration>)[build-directory]: New field.
(nix-service-etc, nix-shepherd-service): Take them into account.
* doc/guix.texi (Nix): Update it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-13 17:46:39 +01:00
a2f0297af0
gnu: guile-gnutls: Add properties for the 'generic-git' updater.
...
* gnu/packages/tls.scm (guile-gnutls)[properties]: New field.
2022-12-13 17:46:39 +01:00
23322c2de8
gnu: tophat: Remove trailing #T from build phases and snippet.
...
* gnu/packages/bioinformatics.scm (tophat)[source]: Remove trailing #T from
snippet.
[arguments]: Remove trailing #T from build phases.
2022-12-13 16:31:55 +01:00
b339e181e1
gnu: python-bx-python: Update to 0.9.0.
...
* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.9.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'build-extensions and 'disable-cython-doctests.
[native-inputs]: Replace python-nose with python-pytest.
2022-12-13 16:31:55 +01:00
de30c74b63
gnu: bioawk: Use gexp.
...
* gnu/packages/bioinformatics.scm (bioawk)[arguments]: Use gexp and simplify
'install phase.
2022-12-13 16:31:55 +01:00
057579495f
gnu: blasr-libcpp: Remove trailing #T from build phases.
...
* gnu/packages/bioinformatics.scm (blasr-libcpp)[arguments]: Remove
trailing #T from build phases.
2022-12-13 16:31:55 +01:00
eaf5198a5e
gnu: pbbam: Drop input labels.
...
* gnu/packages/bioinformatics.scm (pbbam)[native-inputs]: Drop labels.
2022-12-13 16:31:55 +01:00
8b2fdcb2c3
gnu: pbbam: Update to 2.1.0.
...
* gnu/packages/bioinformatics.scm (pbbam): Update to 2.1.0.
2022-12-13 16:31:55 +01:00
684d046e6c
gnu: pbcopper: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (pbcopper): Update to 2.0.0.
2022-12-13 16:31:55 +01:00
53f65f7315
gnu: bedtools: Remove unnecessary quasiquotation.
...
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Remove quasiquote.
[native-inputs]: Drop input label.
2022-12-13 16:31:54 +01:00
4f1a36bd7b
gnu: bamutils: Update to 1.0.15.
...
* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.15.
[arguments]: Remove quasiquoting; remove USER_WARNINGS from make-flags.
[native-inputs]: Update libstatgen.
2022-12-13 16:31:54 +01:00
8cc22866c2
gnu: bamtools: Update to 2.5.2.
...
* gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.2.
[arguments]: Enable tests; remove extra phases.
[inputs]: Add jsoncpp.
[native-inputs]: Add pkg-config.
2022-12-13 16:31:54 +01:00
6d2afaf25b
gnu: aragorn: Update to 1.2.41.
...
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.41.
[source]: Fetch C source file from new location.
[arguments]: Drop trailing #T in build phases; use gexp.
[native-inputs]: Add origin for man page.
[home-page]: Update to new home page.
[license]: Update to GPLv3+.
2022-12-13 16:31:54 +01:00
93b0c1e35e
gnu: Add rpi-imager.
...
* gnu/packages/raspberry-pi.scm (rpi-imager): New variable.
2022-12-13 10:11:20 -05:00
87638cdd48
gnu: mercury: Update to 22.01.4.
...
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4.
[arguments]: Remove obsolete and non-existent file from being patched.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:12 +00:00
1810d67ad4
gnu: mercury-minimal: Update to 22.01.4.
...
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4.
[arguments]: Remove obsolete file path, update libatomic-ops, and update
libgc-8.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:12 +00:00
0682e7c2e3
gnu: python-h5netcdf: Update to 1.1.0.
...
* gnu/packages/python-xyz.scm (python-h5netcdf): Update to 1.1.0.
[build-system]: Use pyproject-build-system, to simplify package.
[description]: Style content and add links to referenced projects.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
1a0dcc2112
gnu: python-asdf-astropy: Update to 0.3.0.
...
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.3.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
866eb7fffb
gnu: Add tmux-plugin-resurrect.
...
* gnu/packages/tmux.scm (tmux-plugin-resurrect): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
36bd9121d6
gnu: Add rust-csv-index-0.1.
...
* gnu/packages/crates-io.scm (rust-csv-index-0.1): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
34cf5e06a9
gnu: nheko: Support video calls.
...
* gnu/packages/messaging.scm (nheko)[inputs]: Replace GST-PLUGINS-GOOD with
GST-PLUGINS-GOOD-QT to fix video calls.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
27efd3ed3c
gnu: Add gst-plugins-good-qt.
...
* gnu/packages/gstreamer.scm (gst-plugins-good-qt): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
2fb187ed7c
gnu: guix-data-service: Update to 0.0.1-36.7b69611.
...
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-36.7b69611.
2022-12-13 13:42:11 +00:00
81841559f4
gnu: kaldi: Update to 0-1.be22248.
...
* gnu/packages/machine-learning.scm (kaldi): Update to 0-1.be22248.
2022-12-13 14:38:13 +01:00
f764947dab
gnu: kaldi: Remove trailing #T from build phases.
...
* gnu/packages/machine-learning.scm (kaldi)[arguments]: Remove trailing #T
from build phases.
2022-12-13 14:38:12 +01:00
c978ae3c6b
gnu: kaldi-gstreamer-server: Update to 0-3.f79e204.
...
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to
0-3.f79e204.
2022-12-13 14:38:12 +01:00
8466aceb13
gnu: kaldi-gstreamer-server: Drop input labels.
...
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Drop
package labels.
2022-12-13 14:38:12 +01:00
79cf84c7ab
gnu: kaldi-gstreamer-server: Remove trailing #T from build phases.
...
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]:
Remove trailing #T from build phases.
2022-12-13 14:38:12 +01:00
01f4617b99
gnu: gst-kaldi-nnet2-online: Update to 0-3.7888ae5.
...
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-3.7888ae5.
[arguments]: Do to quote list; remove trailing #T from build phases; augment
CPLUS_INCLUDE_PATH instead of replacing it.
[inputs]: Replace openfst with openfst-1.7.3.
2022-12-13 14:38:03 +01:00
417604ec25
gnu: sbcl-alloy: Update to 20221126.
...
* gnu/packages/lisp-xyz.scm (sbcl-alloy): Update to 20221126.
2022-12-13 11:18:59 +01:00
706dead679
gnu: sbcl-3b-bmfont: Update to 20220327.
...
* gnu/packages/lisp-xyz.scm (sbcl-3b-bmfont): Update to 20220327.
2022-12-13 11:18:59 +01:00
e7eefbf85c
gnu: Add cl-sdf.
...
* gnu/packages/lisp-xyz.scm (cl-sdf, ecl-sdf, sbcl-sdf): New variables.
2022-12-13 11:18:59 +01:00
f0ebbe1598
gnu: sbcl-cl-vectors: Build all subsystems.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-vectors)[arguments]: Build cl-paths,
cl-aa and cl-aa-misc as well.
2022-12-13 11:18:59 +01:00
4f64d30b5d
gnu: Add cl-binpack.
...
* gnu/packages/lisp-xyz.scm (cl-binpack, ecl-binpack, sbcl-binpack): New variables.
2022-12-13 11:18:59 +01:00
63b508e4fb
gnu: Add cl-uax-14.
...
* gnu/packages/lisp-xyz.scm (cl-uax-14, ecl-uax-14, sbcl-uax-14): New variables.
2022-12-13 11:18:59 +01:00
752b65935d
gnu: Add cl-font-discovery.
...
* gnu/packages/lisp-xyz.scm (cl-font-discovery, ecl-font-discovery,
sbcl-font-discovery): New variables.
2022-12-13 11:18:59 +01:00
206b97c102
gnu: Add cl-colored.
...
* gnu/packages/lisp-xyz.scm (cl-colored, ecl-colored, sbcl-colored): New variables.
2022-12-13 11:18:59 +01:00
ca735decfb
gnu: mympd: Update to 10.1.6.
...
* gnu/packages/mpd.scm (mympd): Update to 10.1.6.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-12-13 14:17:30 +08:00
648b1605dd
gnu: gauche: Update to 0.9.12
...
* gnu/packages/scheme.scm (gauche): Update to 0.9.12.
[source]: Project migrated to GitHub.
libatomic-ops is no longer in the Gauche source tree.
[arguments]: Renamed network test file.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-12-13 14:10:26 +08:00
e84042fdd4
gnu: cnvkit: Update to 0.9.9.
...
* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.9.
[build-system]: Use pyproject-build-system.
[arguments]: Relax restriction on python-joblib.
[propagated-inputs]: Add python-pomegranate and python-scikit-learn.
2022-12-13 00:08:54 +01:00
1369b53d49
gnu: seqmagick: Update to 0.8.4.
...
* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.4.
[build-system]: Use pyproject-build-system.
[inputs]: Add python-pygtrie.
[native-inputs]: Replace python-nose with python-pytest.
2022-12-13 00:08:54 +01:00
9bf2101049
gnu: python-flasgger: Update to 0.9.5.
...
* gnu/packages/python-xyz.scm (python-flasgger): Update to 0.9.5.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'prepare-check phase; disable
"test_swag" test via #:test-flags.
[native-inputs]: Add python-apispec-webframeworks and python-flask-jwt.
2022-12-13 00:08:54 +01:00
8c197f990b
gnu: python-pyjwt: Update to 2.6.0.
...
* gnu/packages/python-xyz.scm (python-pyjwt): Update to 2.6.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[native-inputs]: Add pytohn-coverage, python-pre-commit, python-sphinx, and
python-sphinx-rtd-theme.
2022-12-13 00:08:54 +01:00
99a29b4933
gnu: python-apispec: Update to 6.0.2.
...
* gnu/packages/python-xyz.scm (python-apispec): Update to 6.0.2.
[build-system]: Use pyproject-build-system.
[arguments]: Disable test through test-flags, not by replacing the 'check
phase.
[propagated-inputs]: Remove python-pyyaml; add python-packaging.
[native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy,
python-pre-commit, and python-pyyaml.
2022-12-13 00:08:54 +01:00
0fcba8b01c
gnu: python-marshmallow: Update to 3.19.0.
...
* gnu/packages/python-xyz.scm (python-marshmallow): Update to 3.19.0.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Remove python-dateutil and python-simplejson; add
python-packaging.
[native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy,
python-pre-commit, and python-simplejson.
2022-12-13 00:08:54 +01:00
71dc990f22
gnu: python-flask-restful: Update to 0.3.9.
...
* gnu/packages/python-web.scm (python-flask-restful): Update to 0.3.9.
[source]: Remove patch.
[build-system]: Use pyproject-build-system.
[arguments]: Disable "test_redirect" test; remove 'fix-imports phase.
[native-inputs]: Replace python-nose with python-pytest.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/python-flask-restful-werkzeug-compat.patch: Remove file.
2022-12-13 00:08:54 +01:00
461dff2651
gnu: python-cgatcore: Update to 0.6.14.
...
* gnu/packages/bioinformatics.scm (python-cgatcore): Update to 0.6.14.
[build-system]: Use pyproject-build-system.
[arguments]: Disable broken tests with #:test-flags; do not replace 'check
phase; add phase 'sqlite-compatibility.
[native-inputs]: Drop input labels.
2022-12-13 00:08:54 +01:00
2f1d8fb129
gnu: python-apsw: Update to 3.40.0.0.
...
* gnu/packages/databases.scm (python-apsw): Update to 3.40.0.0.
[source]: Remove obsolete patch.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-cython.
[arguments]: Move build-extensions phase before build phase.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/python-apsw-3.39.2.1-test-fix.patch: Remove file.
2022-12-13 00:08:54 +01:00
08b9e29d46
gnu: python-bokeh: Skip failing PIL test.
...
The test compares base64-encoded gifs; the gifs look identical but the
base64-encoded data differs. Since the result seems fine, disabling this PIL
test is probably okay.
* gnu/packages/python-xyz.scm (python-bokeh)[arguments]: Ignore failing
test_transform_PIL test.
2022-12-13 00:08:13 +01:00
b72df3bbb3
gnu: python-dna-features-viewer: Update to 3.1.1.
...
* gnu/packages/bioinformatics.scm (python-dna-features-viewer):
Update to 3.1.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add build phase to fix a compatibility problem with biopython.
[propagated-inputs]: Add python-packaging.
2022-12-13 00:07:23 +01:00
b66b6bdf70
gnu: python-hicexplorer: Update to 3.7.2.
...
* gnu/packages/bioinformatics.scm (python-hicexplorer): Update to 3.7.2.
[build-system]: Use pyproject-build-system.
[arguments]: Use gexp; remove phase "loosen-up-requirements"; add test-flags
to skip some tests; add phase "remove-dependency-on-krbalancing" to remove a
dependency on an unlicensed package; add phase "fix-references"; add phase
"run-only-low-mem-tests".
[propagated-inputs]: Remove python-configparser and python-six; add
python-biopython, python-cleanlab-1, python-fit-nbinom, python-graphviz,
python-hic2cool, python-hicmatrix, python-hyperopt, python-imbalanced-learn,
python-ipykernel, python-psutil, python-pybedtools, python-pygenometracks,
python-scikit-learn, and python-tqdm.
[native-inputs]: Add graphviz.
2022-12-13 00:07:23 +01:00
c3e330cf36
gnu: python-pygenometracks: Update to 3.5.
...
* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.5.
[build-system]: Use pyproject-build-system.
[arguments]: Quote phases instead of full list of arguments; remove trailing #T
from build phase.
2022-12-13 00:07:22 +01:00
6e9518e201
gnu: python-hicmatrix: Update to 16.
...
* gnu/packages/bioinformatics.scm (python-hicmatrix): Update to 16.
[build-system]: Use pyproject-build-system.
[arguments]: Shuffle the quote.
2022-12-13 00:07:22 +01:00
5167881a60
gnu: python-biopython: Update to 1.80.
...
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.80.
[build-system]: Use pyproject-build-system.
[arguments]: Remove trailing #T from build phase.
2022-12-13 00:07:22 +01:00
de70f957b2
gnu: python-hyperopt: Update to 0.2.7.
...
* gnu/packages/machine-learning.scm (python-hyperopt): Update to 0.2.7.
[arguments]: Adjust check phase; disable test_distribution_rvs test.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-py4j.
[native-inputs]: Remove python-ipython and python-ipyparallel.
2022-12-13 00:07:22 +01:00
3d388fe3d0
gnu: python-graphviz: Update to 0.20.1.
...
* gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom "check" phase; add "prepare-check" phase.
[native-inputs]: Remove python-mock.
2022-12-13 00:07:22 +01:00
75331dc6e6
gnu: python-anndata: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-anndata)[build-system]: Use
pyproject-build-system.
[arguments]: Replace custom 'build phase with 'set-version phase; remove
custom 'install phase; disable doctest via build phase 'disable-doctests and
the #:test-flags property.
[propagated-inputs]: Add python-scikit-learn.
[native-inputs]: Add python-boltons.
2022-12-12 23:59:39 +01:00
2c65106cf5
gnu: python-zarr: Update to 2.13.3.
...
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.13.3.
2022-12-12 23:59:39 +01:00
8b9c9051ba
gnu: python-numcodecs: Update to 0.10.2.
...
* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.10.2.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add phase 'build-extensions; remove custom 'check
phase.
[propagated-inputs]: Add python-entrypoints and python-typing-extensions-next.
2022-12-12 23:59:39 +01:00
c4bcb5db49
gnu: python-typer: Simplify by using pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-typer)[build-system]: Use
pyproject-build-system.
[arguments]: Remove extra quoting; remove custom 'build phase; remove custom
'install phase; remove custom 'check phase; add 'pre-check phase.
[synopsis]: Pull onto the same line.
[description]: Reformat.
2022-12-12 23:59:29 +01:00
1d160f41f5
gnu: Add erlang-yamerl.
...
* gnu/packages/erlang.scm (erlang-yamerl): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-12 20:39:41 +00:00
e4fd04fb92
gnu: Add erlang-jsx.
...
* gnu/packages/erlang.scm (erlang-jsx): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-12 20:34:57 +00:00
d5ad3dd59a
services: guix-build-coordinator: Fix service startup.
...
Previously the service would keep starting more and more processes.
* gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Fix how
make-forkexec-constructor is called.
2022-12-12 19:58:25 +00:00
c1695bcadd
gnu: re2: Update to 2022-12-01.
...
* gnu/packages/regex.scm (re2): Update to 2022-12-01.
2022-12-12 20:23:32 +01:00
2c1b488d19
tests: Add system tests for each supported kernel version.
...
* gnu/tests/base.scm (%test-basic-os): Rename to ...
(test-basic-os): ... this, and turn into procedure that takes optional KERNEL
argument.
(%test-basic-os): Use that procedure.
(%test-linux-libre-5.15, %test-linux-libre-5.10, %test-linux-libre-5.4,
%test-linux-libre-4.19, %test-linux-libre-4.14, %test-linux-libre-4.9): New
tests.
2022-12-12 20:23:32 +01:00
9fc171b62a
gnu: f2fs-tools: Remove obsolete phase.
...
* gnu/packages/linux.scm (f2fs-tools)[arguments]: Remove.
(f2fs-tools-1.7)[arguments]: Add #:phases.
2022-12-12 20:23:31 +01:00
a2c6cc4354
gnu: f2fs-tools: Update to 1.15.0.
...
* gnu/packages/linux.scm (f2fs-tools): Update to 1.15.0.
(f2fs-tools/static)[arguments]: Add #:make-flags. Remove make-static phase.
2022-12-12 20:23:31 +01:00
e1fc45b3ea
gnu: f2fs-tools@1.7: Don't fetch autogenerated git snapshot.
...
* gnu/packages/linux.scm (f2fs-tools-1.7)[source]: Switch to GIT-FETCH.
2022-12-12 20:23:31 +01:00
61f67290b9
gnu: f2fs-tools: Don't fetch autogenerated git snapshot.
...
* gnu/packages/linux.scm (f2fs-tools)[source]: Switch to GIT-FETCH.
2022-12-12 20:23:31 +01:00
58e33da5f5
gnu: f2fs-tools: Reverse inheritance relationship.
...
* gnu/packages/linux.scm (f2fs-tools): Update to 1.14.0.
[arguments]: Remove obsolete #:configure-flags and trailing #t in phase.
[inputs]: Remove labels.
(f2fs-tools-1.7): Inherit from above; add #:configure-flags.
[inputs]: Remove labels.
2022-12-12 20:23:31 +01:00
999783b92d
gnu: ungoogled-chromium: Build with ffmpeg@4.
...
This is a follow-up to commit 79564bf997
2022-12-12 20:23:31 +01:00
3640310d69
gnu: Add r-golem.
...
* gnu/packages/cran.scm (r-golem): New variable.
2022-12-12 19:01:21 +01:00
79ecb5f35f
gnu: Add r-attempt.
...
* gnu/packages/cran.scm (r-attempt): New variable.
2022-12-12 19:01:21 +01:00
75a9ee5b8e
gnu: Add r-anytime.
...
* gnu/packages/cran.scm (r-anytime): New variable.
2022-12-12 18:45:32 +01:00
61124bc7b0
gnu: Add r-shinycustomloader.
...
* gnu/packages/cran.scm (r-shinycustomloader): New variable.
2022-12-12 18:45:31 +01:00
ca7141234d
gnu: Add r-logging.
...
* gnu/packages/cran.scm (r-logging): New variable.
2022-12-12 18:45:31 +01:00
b9014985be
gnu: Add r-asics.
...
* gnu/packages/bioconductor.scm (r-asics): New variable.
2022-12-12 18:41:13 +01:00
061ce5500a
gnu: Add r-pepsnmr.
...
* gnu/packages/bioconductor.scm (r-pepsnmr): New variable.
2022-12-12 18:40:46 +01:00
1e5c9bb0d2
gnu: Add r-ptw.
...
* gnu/packages/cran.scm (r-ptw): New variable.
2022-12-12 18:40:11 +01:00
c2d25c7b5e
gnu: Add r-rcppde.
...
* gnu/packages/cran.scm (r-rcppde): New variable.
2022-12-12 18:39:26 +01:00
e0746ee4c4
gnu: Add r-animalcules.
...
* gnu/packages/bioconductor.scm (r-animalcules): New variable.
2022-12-12 17:30:05 +01:00
8f80c99e2b
gnu: Add r-plotroc.
...
* gnu/packages/cran.scm (r-plotroc): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-12-12 17:24:07 +01:00
b6873a836c
gnu: Add r-gridsvg.
...
* gnu/packages/cran.scm (r-gridsvg): New variable.
2022-12-12 16:22:28 +01:00
5154e76a2e
gnu: Add r-gunifrac.
...
* gnu/packages/cran.scm (r-gunifrac): New variable.
2022-12-12 16:21:50 +01:00
48e6e67990
gnu: Add r-dirmult.
...
* gnu/packages/cran.scm (r-dirmult): New variable.
2022-12-12 16:20:36 +01:00
e99b3c0d25
gnu: Add r-modeest.
...
* gnu/packages/cran.scm (r-modeest): New variable.
2022-12-12 16:19:49 +01:00
7ec230fe12
gnu: Add r-fbasics.
...
* gnu/packages/cran.scm (r-fbasics): New variable.
2022-12-12 16:19:49 +01:00
3e6e0696cc
gnu: Add r-timeseries.
...
* gnu/packages/cran.scm (r-timeseries): New variable.
2022-12-12 16:19:18 +01:00
9e03e01aae
gnu: Add r-gss.
...
* gnu/packages/cran.scm (r-gss): New variable.
2022-12-12 16:18:43 +01:00
9c81ab8b39
gnu: Add r-stable.
...
* gnu/packages/cran.scm (r-stable): New variable.
2022-12-12 16:18:17 +01:00
977a15d8e8
gnu: Add r-rmutil.
...
* gnu/packages/cran.scm (r-rmutil): New variable.
2022-12-12 16:17:39 +01:00
8d2222fac6
gnu: Add r-statip.
...
* gnu/packages/cran.scm (r-statip): New variable.
2022-12-12 16:17:07 +01:00
5fb5af5658
gnu: Add r-amplican.
...
* gnu/packages/bioconductor.scm (r-amplican): New variable.
2022-12-12 15:50:28 +01:00
84392cd024
gnu: Add r-waffle.
...
* gnu/packages/cran.scm (r-waffle): New variable.
2022-12-12 15:48:37 +01:00
ec2388d6b4
gnu: Add r-clustercrit.
...
* gnu/packages/cran.scm (r-clustercrit): New variable.
2022-12-12 15:48:03 +01:00
8363719476
gnu: Add r-harshlight.
...
* gnu/packages/bioconductor.scm (r-harshlight): New variable.
2022-12-12 15:37:15 +01:00
85d5ce4901
gnu: Add r-altcdfenvs.
...
* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable.
2022-12-12 15:37:15 +01:00
Guillaume Le Vaillant
Ricardo Wurmus
Tobias Geerinckx-Rice
Maxim Cournoyer
Bruno Victal
Simen Endsjø
Ludovic Courtès
Petr Hodina
Jelle Licht
Konrad Hinsen
Nicolas Goaziou
dan
Mark H Weaver
jgart
Sharlatan Hellseher
EuAndreh
Paul A. Patience
Martin Schmidt
Christopher Baines
Pierre Neidhardt
Robby Zambito
Marius Bakke
Mădălin Ionel Patrașcu