e4ab2ccb18
gnu: emacs-beancount: Update to 0.0.0-1.687775d.
...
* gnu/packages/finance.scm (emacs-beancount): Update to 0.0.0-1.687775d.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13 21:24:02 +01:00
d83eef22b2
gnu: icecat: Update to 102.6.0-guix0-preview1 [security fixes].
...
Includes fixes for CVE-2022-46872, CVE-2022-46874, CVE-2022-46875,
CVE-2022-46878, CVE-2022-46880, CVE-2022-46881, and CVE-2022-46882.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
2022-12-13 12:36:39 -05:00
3d2b2f12e5
gnu: bedops: Update to 2.4.41.
...
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.41.
[arguments]: Remove trailing #T from build phases; do not set BINDIR in
make-flags; set CC; replace 'install phase.
[native-inputs]: Add diffutils, perl, and which.
2022-12-13 18:22:55 +01:00
22acc0b029
services: nix: Add more configuration fields.
...
* gnu/services/nix.scm (<nix-configuration>)[build-directory]: New field.
(nix-service-etc, nix-shepherd-service): Take them into account.
* doc/guix.texi (Nix): Update it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-13 17:46:39 +01:00
a2f0297af0
gnu: guile-gnutls: Add properties for the 'generic-git' updater.
...
* gnu/packages/tls.scm (guile-gnutls)[properties]: New field.
2022-12-13 17:46:39 +01:00
23322c2de8
gnu: tophat: Remove trailing #T from build phases and snippet.
...
* gnu/packages/bioinformatics.scm (tophat)[source]: Remove trailing #T from
snippet.
[arguments]: Remove trailing #T from build phases.
2022-12-13 16:31:55 +01:00
b339e181e1
gnu: python-bx-python: Update to 0.9.0.
...
* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.9.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'build-extensions and 'disable-cython-doctests.
[native-inputs]: Replace python-nose with python-pytest.
2022-12-13 16:31:55 +01:00
de30c74b63
gnu: bioawk: Use gexp.
...
* gnu/packages/bioinformatics.scm (bioawk)[arguments]: Use gexp and simplify
'install phase.
2022-12-13 16:31:55 +01:00
057579495f
gnu: blasr-libcpp: Remove trailing #T from build phases.
...
* gnu/packages/bioinformatics.scm (blasr-libcpp)[arguments]: Remove
trailing #T from build phases.
2022-12-13 16:31:55 +01:00
eaf5198a5e
gnu: pbbam: Drop input labels.
...
* gnu/packages/bioinformatics.scm (pbbam)[native-inputs]: Drop labels.
2022-12-13 16:31:55 +01:00
8b2fdcb2c3
gnu: pbbam: Update to 2.1.0.
...
* gnu/packages/bioinformatics.scm (pbbam): Update to 2.1.0.
2022-12-13 16:31:55 +01:00
684d046e6c
gnu: pbcopper: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (pbcopper): Update to 2.0.0.
2022-12-13 16:31:55 +01:00
53f65f7315
gnu: bedtools: Remove unnecessary quasiquotation.
...
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Remove quasiquote.
[native-inputs]: Drop input label.
2022-12-13 16:31:54 +01:00
4f1a36bd7b
gnu: bamutils: Update to 1.0.15.
...
* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.15.
[arguments]: Remove quasiquoting; remove USER_WARNINGS from make-flags.
[native-inputs]: Update libstatgen.
2022-12-13 16:31:54 +01:00
8cc22866c2
gnu: bamtools: Update to 2.5.2.
...
* gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.2.
[arguments]: Enable tests; remove extra phases.
[inputs]: Add jsoncpp.
[native-inputs]: Add pkg-config.
2022-12-13 16:31:54 +01:00
6d2afaf25b
gnu: aragorn: Update to 1.2.41.
...
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.41.
[source]: Fetch C source file from new location.
[arguments]: Drop trailing #T in build phases; use gexp.
[native-inputs]: Add origin for man page.
[home-page]: Update to new home page.
[license]: Update to GPLv3+.
2022-12-13 16:31:54 +01:00
93b0c1e35e
gnu: Add rpi-imager.
...
* gnu/packages/raspberry-pi.scm (rpi-imager): New variable.
2022-12-13 10:11:20 -05:00
87638cdd48
gnu: mercury: Update to 22.01.4.
...
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4.
[arguments]: Remove obsolete and non-existent file from being patched.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:12 +00:00
1810d67ad4
gnu: mercury-minimal: Update to 22.01.4.
...
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4.
[arguments]: Remove obsolete file path, update libatomic-ops, and update
libgc-8.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:12 +00:00
0682e7c2e3
gnu: python-h5netcdf: Update to 1.1.0.
...
* gnu/packages/python-xyz.scm (python-h5netcdf): Update to 1.1.0.
[build-system]: Use pyproject-build-system, to simplify package.
[description]: Style content and add links to referenced projects.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
1a0dcc2112
gnu: python-asdf-astropy: Update to 0.3.0.
...
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.3.0.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
866eb7fffb
gnu: Add tmux-plugin-resurrect.
...
* gnu/packages/tmux.scm (tmux-plugin-resurrect): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
36bd9121d6
gnu: Add rust-csv-index-0.1.
...
* gnu/packages/crates-io.scm (rust-csv-index-0.1): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
34cf5e06a9
gnu: nheko: Support video calls.
...
* gnu/packages/messaging.scm (nheko)[inputs]: Replace GST-PLUGINS-GOOD with
GST-PLUGINS-GOOD-QT to fix video calls.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
27efd3ed3c
gnu: Add gst-plugins-good-qt.
...
* gnu/packages/gstreamer.scm (gst-plugins-good-qt): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
2fb187ed7c
gnu: guix-data-service: Update to 0.0.1-36.7b69611.
...
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-36.7b69611.
2022-12-13 13:42:11 +00:00
81841559f4
gnu: kaldi: Update to 0-1.be22248.
...
* gnu/packages/machine-learning.scm (kaldi): Update to 0-1.be22248.
2022-12-13 14:38:13 +01:00
f764947dab
gnu: kaldi: Remove trailing #T from build phases.
...
* gnu/packages/machine-learning.scm (kaldi)[arguments]: Remove trailing #T
from build phases.
2022-12-13 14:38:12 +01:00
c978ae3c6b
gnu: kaldi-gstreamer-server: Update to 0-3.f79e204.
...
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to
0-3.f79e204.
2022-12-13 14:38:12 +01:00
8466aceb13
gnu: kaldi-gstreamer-server: Drop input labels.
...
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Drop
package labels.
2022-12-13 14:38:12 +01:00
79cf84c7ab
gnu: kaldi-gstreamer-server: Remove trailing #T from build phases.
...
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]:
Remove trailing #T from build phases.
2022-12-13 14:38:12 +01:00
01f4617b99
gnu: gst-kaldi-nnet2-online: Update to 0-3.7888ae5.
...
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-3.7888ae5.
[arguments]: Do to quote list; remove trailing #T from build phases; augment
CPLUS_INCLUDE_PATH instead of replacing it.
[inputs]: Replace openfst with openfst-1.7.3.
2022-12-13 14:38:03 +01:00
417604ec25
gnu: sbcl-alloy: Update to 20221126.
...
* gnu/packages/lisp-xyz.scm (sbcl-alloy): Update to 20221126.
2022-12-13 11:18:59 +01:00
706dead679
gnu: sbcl-3b-bmfont: Update to 20220327.
...
* gnu/packages/lisp-xyz.scm (sbcl-3b-bmfont): Update to 20220327.
2022-12-13 11:18:59 +01:00
e7eefbf85c
gnu: Add cl-sdf.
...
* gnu/packages/lisp-xyz.scm (cl-sdf, ecl-sdf, sbcl-sdf): New variables.
2022-12-13 11:18:59 +01:00
f0ebbe1598
gnu: sbcl-cl-vectors: Build all subsystems.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-vectors)[arguments]: Build cl-paths,
cl-aa and cl-aa-misc as well.
2022-12-13 11:18:59 +01:00
4f64d30b5d
gnu: Add cl-binpack.
...
* gnu/packages/lisp-xyz.scm (cl-binpack, ecl-binpack, sbcl-binpack): New variables.
2022-12-13 11:18:59 +01:00
63b508e4fb
gnu: Add cl-uax-14.
...
* gnu/packages/lisp-xyz.scm (cl-uax-14, ecl-uax-14, sbcl-uax-14): New variables.
2022-12-13 11:18:59 +01:00
752b65935d
gnu: Add cl-font-discovery.
...
* gnu/packages/lisp-xyz.scm (cl-font-discovery, ecl-font-discovery,
sbcl-font-discovery): New variables.
2022-12-13 11:18:59 +01:00
206b97c102
gnu: Add cl-colored.
...
* gnu/packages/lisp-xyz.scm (cl-colored, ecl-colored, sbcl-colored): New variables.
2022-12-13 11:18:59 +01:00
ca735decfb
gnu: mympd: Update to 10.1.6.
...
* gnu/packages/mpd.scm (mympd): Update to 10.1.6.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-12-13 14:17:30 +08:00
648b1605dd
gnu: gauche: Update to 0.9.12
...
* gnu/packages/scheme.scm (gauche): Update to 0.9.12.
[source]: Project migrated to GitHub.
libatomic-ops is no longer in the Gauche source tree.
[arguments]: Renamed network test file.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-12-13 14:10:26 +08:00
e84042fdd4
gnu: cnvkit: Update to 0.9.9.
...
* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.9.
[build-system]: Use pyproject-build-system.
[arguments]: Relax restriction on python-joblib.
[propagated-inputs]: Add python-pomegranate and python-scikit-learn.
2022-12-13 00:08:54 +01:00
1369b53d49
gnu: seqmagick: Update to 0.8.4.
...
* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.4.
[build-system]: Use pyproject-build-system.
[inputs]: Add python-pygtrie.
[native-inputs]: Replace python-nose with python-pytest.
2022-12-13 00:08:54 +01:00
9bf2101049
gnu: python-flasgger: Update to 0.9.5.
...
* gnu/packages/python-xyz.scm (python-flasgger): Update to 0.9.5.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'prepare-check phase; disable
"test_swag" test via #:test-flags.
[native-inputs]: Add python-apispec-webframeworks and python-flask-jwt.
2022-12-13 00:08:54 +01:00
8c197f990b
gnu: python-pyjwt: Update to 2.6.0.
...
* gnu/packages/python-xyz.scm (python-pyjwt): Update to 2.6.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[native-inputs]: Add pytohn-coverage, python-pre-commit, python-sphinx, and
python-sphinx-rtd-theme.
2022-12-13 00:08:54 +01:00
99a29b4933
gnu: python-apispec: Update to 6.0.2.
...
* gnu/packages/python-xyz.scm (python-apispec): Update to 6.0.2.
[build-system]: Use pyproject-build-system.
[arguments]: Disable test through test-flags, not by replacing the 'check
phase.
[propagated-inputs]: Remove python-pyyaml; add python-packaging.
[native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy,
python-pre-commit, and python-pyyaml.
2022-12-13 00:08:54 +01:00
0fcba8b01c
gnu: python-marshmallow: Update to 3.19.0.
...
* gnu/packages/python-xyz.scm (python-marshmallow): Update to 3.19.0.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Remove python-dateutil and python-simplejson; add
python-packaging.
[native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy,
python-pre-commit, and python-simplejson.
2022-12-13 00:08:54 +01:00
71dc990f22
gnu: python-flask-restful: Update to 0.3.9.
...
* gnu/packages/python-web.scm (python-flask-restful): Update to 0.3.9.
[source]: Remove patch.
[build-system]: Use pyproject-build-system.
[arguments]: Disable "test_redirect" test; remove 'fix-imports phase.
[native-inputs]: Replace python-nose with python-pytest.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/python-flask-restful-werkzeug-compat.patch: Remove file.
2022-12-13 00:08:54 +01:00
461dff2651
gnu: python-cgatcore: Update to 0.6.14.
...
* gnu/packages/bioinformatics.scm (python-cgatcore): Update to 0.6.14.
[build-system]: Use pyproject-build-system.
[arguments]: Disable broken tests with #:test-flags; do not replace 'check
phase; add phase 'sqlite-compatibility.
[native-inputs]: Drop input labels.
2022-12-13 00:08:54 +01:00
2f1d8fb129
gnu: python-apsw: Update to 3.40.0.0.
...
* gnu/packages/databases.scm (python-apsw): Update to 3.40.0.0.
[source]: Remove obsolete patch.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-cython.
[arguments]: Move build-extensions phase before build phase.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/python-apsw-3.39.2.1-test-fix.patch: Remove file.
2022-12-13 00:08:54 +01:00
08b9e29d46
gnu: python-bokeh: Skip failing PIL test.
...
The test compares base64-encoded gifs; the gifs look identical but the
base64-encoded data differs. Since the result seems fine, disabling this PIL
test is probably okay.
* gnu/packages/python-xyz.scm (python-bokeh)[arguments]: Ignore failing
test_transform_PIL test.
2022-12-13 00:08:13 +01:00
b72df3bbb3
gnu: python-dna-features-viewer: Update to 3.1.1.
...
* gnu/packages/bioinformatics.scm (python-dna-features-viewer):
Update to 3.1.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add build phase to fix a compatibility problem with biopython.
[propagated-inputs]: Add python-packaging.
2022-12-13 00:07:23 +01:00
b66b6bdf70
gnu: python-hicexplorer: Update to 3.7.2.
...
* gnu/packages/bioinformatics.scm (python-hicexplorer): Update to 3.7.2.
[build-system]: Use pyproject-build-system.
[arguments]: Use gexp; remove phase "loosen-up-requirements"; add test-flags
to skip some tests; add phase "remove-dependency-on-krbalancing" to remove a
dependency on an unlicensed package; add phase "fix-references"; add phase
"run-only-low-mem-tests".
[propagated-inputs]: Remove python-configparser and python-six; add
python-biopython, python-cleanlab-1, python-fit-nbinom, python-graphviz,
python-hic2cool, python-hicmatrix, python-hyperopt, python-imbalanced-learn,
python-ipykernel, python-psutil, python-pybedtools, python-pygenometracks,
python-scikit-learn, and python-tqdm.
[native-inputs]: Add graphviz.
2022-12-13 00:07:23 +01:00
c3e330cf36
gnu: python-pygenometracks: Update to 3.5.
...
* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.5.
[build-system]: Use pyproject-build-system.
[arguments]: Quote phases instead of full list of arguments; remove trailing #T
from build phase.
2022-12-13 00:07:22 +01:00
6e9518e201
gnu: python-hicmatrix: Update to 16.
...
* gnu/packages/bioinformatics.scm (python-hicmatrix): Update to 16.
[build-system]: Use pyproject-build-system.
[arguments]: Shuffle the quote.
2022-12-13 00:07:22 +01:00
5167881a60
gnu: python-biopython: Update to 1.80.
...
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.80.
[build-system]: Use pyproject-build-system.
[arguments]: Remove trailing #T from build phase.
2022-12-13 00:07:22 +01:00
de70f957b2
gnu: python-hyperopt: Update to 0.2.7.
...
* gnu/packages/machine-learning.scm (python-hyperopt): Update to 0.2.7.
[arguments]: Adjust check phase; disable test_distribution_rvs test.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-py4j.
[native-inputs]: Remove python-ipython and python-ipyparallel.
2022-12-13 00:07:22 +01:00
3d388fe3d0
gnu: python-graphviz: Update to 0.20.1.
...
* gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom "check" phase; add "prepare-check" phase.
[native-inputs]: Remove python-mock.
2022-12-13 00:07:22 +01:00
75331dc6e6
gnu: python-anndata: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-anndata)[build-system]: Use
pyproject-build-system.
[arguments]: Replace custom 'build phase with 'set-version phase; remove
custom 'install phase; disable doctest via build phase 'disable-doctests and
the #:test-flags property.
[propagated-inputs]: Add python-scikit-learn.
[native-inputs]: Add python-boltons.
2022-12-12 23:59:39 +01:00
2c65106cf5
gnu: python-zarr: Update to 2.13.3.
...
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.13.3.
2022-12-12 23:59:39 +01:00
8b9c9051ba
gnu: python-numcodecs: Update to 0.10.2.
...
* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.10.2.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add phase 'build-extensions; remove custom 'check
phase.
[propagated-inputs]: Add python-entrypoints and python-typing-extensions-next.
2022-12-12 23:59:39 +01:00
c4bcb5db49
gnu: python-typer: Simplify by using pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-typer)[build-system]: Use
pyproject-build-system.
[arguments]: Remove extra quoting; remove custom 'build phase; remove custom
'install phase; remove custom 'check phase; add 'pre-check phase.
[synopsis]: Pull onto the same line.
[description]: Reformat.
2022-12-12 23:59:29 +01:00
1d160f41f5
gnu: Add erlang-yamerl.
...
* gnu/packages/erlang.scm (erlang-yamerl): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-12 20:39:41 +00:00
e4fd04fb92
gnu: Add erlang-jsx.
...
* gnu/packages/erlang.scm (erlang-jsx): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-12 20:34:57 +00:00
d5ad3dd59a
services: guix-build-coordinator: Fix service startup.
...
Previously the service would keep starting more and more processes.
* gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Fix how
make-forkexec-constructor is called.
2022-12-12 19:58:25 +00:00
c1695bcadd
gnu: re2: Update to 2022-12-01.
...
* gnu/packages/regex.scm (re2): Update to 2022-12-01.
2022-12-12 20:23:32 +01:00
2c1b488d19
tests: Add system tests for each supported kernel version.
...
* gnu/tests/base.scm (%test-basic-os): Rename to ...
(test-basic-os): ... this, and turn into procedure that takes optional KERNEL
argument.
(%test-basic-os): Use that procedure.
(%test-linux-libre-5.15, %test-linux-libre-5.10, %test-linux-libre-5.4,
%test-linux-libre-4.19, %test-linux-libre-4.14, %test-linux-libre-4.9): New
tests.
2022-12-12 20:23:32 +01:00
9fc171b62a
gnu: f2fs-tools: Remove obsolete phase.
...
* gnu/packages/linux.scm (f2fs-tools)[arguments]: Remove.
(f2fs-tools-1.7)[arguments]: Add #:phases.
2022-12-12 20:23:31 +01:00
a2c6cc4354
gnu: f2fs-tools: Update to 1.15.0.
...
* gnu/packages/linux.scm (f2fs-tools): Update to 1.15.0.
(f2fs-tools/static)[arguments]: Add #:make-flags. Remove make-static phase.
2022-12-12 20:23:31 +01:00
e1fc45b3ea
gnu: f2fs-tools@1.7: Don't fetch autogenerated git snapshot.
...
* gnu/packages/linux.scm (f2fs-tools-1.7)[source]: Switch to GIT-FETCH.
2022-12-12 20:23:31 +01:00
61f67290b9
gnu: f2fs-tools: Don't fetch autogenerated git snapshot.
...
* gnu/packages/linux.scm (f2fs-tools)[source]: Switch to GIT-FETCH.
2022-12-12 20:23:31 +01:00
58e33da5f5
gnu: f2fs-tools: Reverse inheritance relationship.
...
* gnu/packages/linux.scm (f2fs-tools): Update to 1.14.0.
[arguments]: Remove obsolete #:configure-flags and trailing #t in phase.
[inputs]: Remove labels.
(f2fs-tools-1.7): Inherit from above; add #:configure-flags.
[inputs]: Remove labels.
2022-12-12 20:23:31 +01:00
999783b92d
gnu: ungoogled-chromium: Build with ffmpeg@4.
...
This is a follow-up to commit 79564bf997
2022-12-12 20:23:31 +01:00
3640310d69
gnu: Add r-golem.
...
* gnu/packages/cran.scm (r-golem): New variable.
2022-12-12 19:01:21 +01:00
79ecb5f35f
gnu: Add r-attempt.
...
* gnu/packages/cran.scm (r-attempt): New variable.
2022-12-12 19:01:21 +01:00
75a9ee5b8e
gnu: Add r-anytime.
...
* gnu/packages/cran.scm (r-anytime): New variable.
2022-12-12 18:45:32 +01:00
61124bc7b0
gnu: Add r-shinycustomloader.
...
* gnu/packages/cran.scm (r-shinycustomloader): New variable.
2022-12-12 18:45:31 +01:00
ca7141234d
gnu: Add r-logging.
...
* gnu/packages/cran.scm (r-logging): New variable.
2022-12-12 18:45:31 +01:00
b9014985be
gnu: Add r-asics.
...
* gnu/packages/bioconductor.scm (r-asics): New variable.
2022-12-12 18:41:13 +01:00
061ce5500a
gnu: Add r-pepsnmr.
...
* gnu/packages/bioconductor.scm (r-pepsnmr): New variable.
2022-12-12 18:40:46 +01:00
1e5c9bb0d2
gnu: Add r-ptw.
...
* gnu/packages/cran.scm (r-ptw): New variable.
2022-12-12 18:40:11 +01:00
c2d25c7b5e
gnu: Add r-rcppde.
...
* gnu/packages/cran.scm (r-rcppde): New variable.
2022-12-12 18:39:26 +01:00
e0746ee4c4
gnu: Add r-animalcules.
...
* gnu/packages/bioconductor.scm (r-animalcules): New variable.
2022-12-12 17:30:05 +01:00
8f80c99e2b
gnu: Add r-plotroc.
...
* gnu/packages/cran.scm (r-plotroc): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-12-12 17:24:07 +01:00
b6873a836c
gnu: Add r-gridsvg.
...
* gnu/packages/cran.scm (r-gridsvg): New variable.
2022-12-12 16:22:28 +01:00
5154e76a2e
gnu: Add r-gunifrac.
...
* gnu/packages/cran.scm (r-gunifrac): New variable.
2022-12-12 16:21:50 +01:00
48e6e67990
gnu: Add r-dirmult.
...
* gnu/packages/cran.scm (r-dirmult): New variable.
2022-12-12 16:20:36 +01:00
e99b3c0d25
gnu: Add r-modeest.
...
* gnu/packages/cran.scm (r-modeest): New variable.
2022-12-12 16:19:49 +01:00
7ec230fe12
gnu: Add r-fbasics.
...
* gnu/packages/cran.scm (r-fbasics): New variable.
2022-12-12 16:19:49 +01:00
3e6e0696cc
gnu: Add r-timeseries.
...
* gnu/packages/cran.scm (r-timeseries): New variable.
2022-12-12 16:19:18 +01:00
9e03e01aae
gnu: Add r-gss.
...
* gnu/packages/cran.scm (r-gss): New variable.
2022-12-12 16:18:43 +01:00
9c81ab8b39
gnu: Add r-stable.
...
* gnu/packages/cran.scm (r-stable): New variable.
2022-12-12 16:18:17 +01:00
977a15d8e8
gnu: Add r-rmutil.
...
* gnu/packages/cran.scm (r-rmutil): New variable.
2022-12-12 16:17:39 +01:00
8d2222fac6
gnu: Add r-statip.
...
* gnu/packages/cran.scm (r-statip): New variable.
2022-12-12 16:17:07 +01:00
5fb5af5658
gnu: Add r-amplican.
...
* gnu/packages/bioconductor.scm (r-amplican): New variable.
2022-12-12 15:50:28 +01:00
84392cd024
gnu: Add r-waffle.
...
* gnu/packages/cran.scm (r-waffle): New variable.
2022-12-12 15:48:37 +01:00
ec2388d6b4
gnu: Add r-clustercrit.
...
* gnu/packages/cran.scm (r-clustercrit): New variable.
2022-12-12 15:48:03 +01:00
8363719476
gnu: Add r-harshlight.
...
* gnu/packages/bioconductor.scm (r-harshlight): New variable.
2022-12-12 15:37:15 +01:00
85d5ce4901
gnu: Add r-altcdfenvs.
...
* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable.
2022-12-12 15:37:15 +01:00
97b36ca4d3
gnu: Add r-makecdfenv.
...
* gnu/packages/bioconductor.scm (r-makecdfenv): New variable.
2022-12-12 15:37:15 +01:00
776632c0be
gnu: yajl: Improve description.
...
* gnu/packages/web.scm (yajl)[synopsis, description]: Edit. Mark up.
Note generator.
2022-12-11 01:00:00 +01:00
2a779dc9bd
gnu: yajl: Remove trailing #t from phases.
...
* gnu/packages/web.scm (yajl)[arguments]: Don't explicitly return #t from phases.
2022-12-11 01:00:00 +01:00
8fe6d3e844
gnu: yajl: Drop custom ‘lib-’ prefix.
...
* gnu/packages/web.scm (yajl): New variable, renamed from…
(libyajl): …this one, which is now a DEPRECATED-PACKAGE alias of yajl.
Adjust all users.
2022-12-11 01:00:00 +01:00
b5f3a1b84e
gnu: Remove unused module import.
...
* gnu/packages/version-control.scm: Don't import (guix build python-build-system).
2022-12-12 15:12:58 +01:00
16f87d883b
services: zabbix-server: Increase Shepherd grace period.
...
* gnu/services/monitoring.scm (zabbix-server-shepherd-service)[stop]: Add
#:grace-period.
2022-12-12 15:12:58 +01:00
79564bf997
gnu: ffmpeg: Promote version 5 to the default.
...
* gnu/packages/video.scm (ffmpeg): Alias to FFMPEG-5.
(mlt-6)[inpust]: Replace "ffmpeg" with FFMPEG-4.
(transcode, libquicktime, ffmpegthumbnailer, mplayer, obs,
simplescreenrecorder, handbrake, ffms2, libopenshot, wlstream)[inputs]: Change
from FFMPEG to FFMPEG-4.
* gnu/packages/arcan.scm (arcan)[inputs]: Likewise.
* gnu/packages/astronomy.scm (stackistry, libskry)[inputs]: Likewise.
* gnu/packages/audio.scm (aubio, bs1770gain)[inputs]: Likewise.
* gnu/packages/education.scm (openboard)[inputs]: Likewise.
* gnu/packages/emulators.scm (dolphin-emu, retroarch, pcsxr, ppsspp)[inputs]:
Likewise.
* gnu/packages/game-development.scm (warsow-qfusion)[inputs]: Likewise.
* gnu/packages/games.scm (oshu, hedgewars)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/graphics.scm (openscenegraph)[inputs]: Likewise.
* gnu/packages/image-processing.scm (opencv, paraview-5.9)[inputs]: Likewise.
* gnu/packages/julia-jll.scm (julia-ffmpeg-jll)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (kid3)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/linphone.scm (mediastreamer2)[inputs]: Likewise.
* gnu/packages/linux.scm (pipewire)[inputs]: Likewise.
(pipewire-0.3)[inputs]: Replace "ffmpeg" with FFMPEG.
* gnu/packages/mp3.scm (chromaprint)[inputs]: Change from FFMPEG to FFMPEG-4.
* gnu/packages/music.scm (musikcube)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/qt.scm (qtwebengine-5)[inputs]: Likewise.
2022-12-12 15:12:58 +01:00
bf9d119e32
gnu: Sort module imports in (gnu packages scheme).
...
* gnu/packages/scheme.scm: Sort imports. Remove one duplicate.
2022-12-12 15:12:58 +01:00
240c823ae1
gnu: pianobar: Update to 2022.04.01.
...
* gnu/packages/music.scm (pianobar): Update to 2022.04.01.
2022-12-12 15:12:58 +01:00
1572071b68
gnu: motion: Remove input labels.
...
* gnu/packages/video.scm (motion)[native-inputs, inputs]: Remove labels.
2022-12-12 15:12:57 +01:00
dce40ccc47
gnu: motion: Update to 4.5.0.
...
* gnu/packages/video.scm (motion): Update to 4.5.0.
2022-12-12 15:12:57 +01:00
3dc667b6f8
gnu: vapoursynth: Remove input labels.
...
* gnu/packages/video.scm (vapoursynth)[native-inputs]: Remove labels.
2022-12-12 15:12:57 +01:00
85ea2dfc4c
gnu: vapoursynth: Update to 61.
...
* gnu/packages/video.scm (vapoursynth): Update to 61.
2022-12-12 15:12:57 +01:00
6bfde85d36
gnu: wxsvg: Update to 1.5.24.
...
* gnu/packages/wxwidgets.scm (wxsvg): Update to 1.5.24.
2022-12-12 15:12:57 +01:00
f9fb8460ce
gnu: tracker-miners: Remove obsolete input.
...
* gnu/packages/gnome.scm (tracker-miners)[native-inputs]: Remove INTLTOOL.
Add GETTEXT-MINIMAL.
2022-12-12 15:12:57 +01:00
b8b4d63137
gnu: OpenLDAP: Update to 2.6.3.
...
* gnu/packages/openldap.scm (openldap-2.6): Update to 2.6.3.
2022-12-12 15:12:57 +01:00
302a84a593
Merge branch 'version-1.4.0'
2022-12-12 15:03:35 +01:00
94e9651241
gnu: Add python-pomegranate.
...
* gnu/packages/python-xyz.scm (python-pomegranate): New variable.
2022-12-12 14:37:04 +01:00
bc47a1bf02
gnu: Add python-pygtrie.
...
* gnu/packages/python-xyz.scm (python-pygtrie): New variable.
2022-12-12 14:37:03 +01:00
49ec1fbc8f
gnu: Add python-flask-jwt.
...
* gnu/packages/python-web.scm (python-flask-jwt): New variable.
2022-12-12 14:37:03 +01:00
be9e8c3963
gnu: Add python-apispec-webframeworks.
...
* gnu/packages/python-xyz.scm (python-apispec-webframeworks): New variable.
2022-12-12 14:37:03 +01:00
a88fa1ced7
gnu: Add python-fit-nbinom.
...
* gnu/packages/python-xyz.scm (python-fit-nbinom): New variable.
2022-12-12 14:37:03 +01:00
97cfa1cd78
gnu: Add python-py4j.
...
* gnu/packages/python-xyz.scm (python-py4j): New variable.
2022-12-12 14:37:03 +01:00
df9a7c2032
gnu: Add python-imbalanced-learn.
...
* gnu/packages/machine-learning.scm (python-imbalanced-learn): New variable.
2022-12-12 14:37:03 +01:00
91d4a78f41
gnu: Add python-cleanlab-1.
...
* gnu/packages/machine-learning.scm (python-cleanlab-1): New variable.
2022-12-12 14:37:03 +01:00
eb23379828
gnu: Add python-cleanlab.
...
* gnu/packages/machine-learning.scm (python-cleanlab): New variable.
2022-12-12 14:37:03 +01:00
2c8a53cb6b
gnu: bioperl-minimal: Remove trailing #T from build phase.
...
* gnu/packages/bioinformatics.scm (bioperl-minimal)[arguments]: Remove
trailing #T from build phase.
2022-12-12 14:37:03 +01:00
7c8832e106
gnu: u-boot: Use plain list of inputs.
...
* gnu/packages/bootloaders.scm (u-boot)[native-inputs]: Drop input labels.
2022-12-12 14:37:03 +01:00
5b0e656e57
gnu: u-boot: Update to 2022.10.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2022.10.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Disable
fit_pre_load_data, which depends on openssl.
2022-12-12 14:37:03 +01:00
ad4bb682d3
gnu: eisl: Update to 2.65.
...
* gnu/packages/lisp.scm (eisl): Update to 2.65.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-12 11:51:45 +01:00
7a1f1a48cb
gnu: cl-april: Update to 1.0-3.bdd74f1.
...
* gnu/packages/lisp-xyz.scm (sbcl-april): Update to 1.0-3.bdd74f1.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-12 11:34:46 +01:00
fbec026f42
gnu: Add cl-conduit-packages.
...
* gnu/packages/lisp-xyz.scm (cl-conduit-packages, ecl-conduit-packages,
sbcl-conduit-packages): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-12 11:33:33 +01:00
911b0a5451
gnu: Add cl-fare-csv.
...
* gnu/packages/lisp-xyz.scm (cl-fare-csv, ecl-fare-csv, sbcl-fare-csv):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-12 11:24:47 +01:00
8ac8ca3252
gnu: mcomix: Update to 2.0.2.
...
* gnu/packages/image-viewers.scm (mcomix): Update to 2.0.2.
2022-12-12 10:52:47 +01:00
45f5feb279
image: Use 512 byte blocks for EFI partitions.
...
Addresses <https://issues.guix.gnu.org/59695 >.
* gnu/build/image.scm (make-vfat-image): When creating a fat filesystem
for UEFI bootable partition use 512 byte blocks.
2022-12-12 10:47:59 +02:00
2d989ad597
gnu: python-seaborn: Update to 0.12.0.
...
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.12.0.
[source]: Remove patches.
[arguments]: Import (ice-9 match) module. Remove patch-more-tests and
start-xserver phases. Replace build and install phases. Fix pytest command in
check phase.
[native-inputs]: Add python-flit-core and python-pypa-build. Remove
xorg-server-for-tests.
* gnu/packages/patches/python-seaborn-2690.patch,
gnu/packages/patches/python-seaborn-kde-test.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Unregister them.
2022-12-11 23:55:54 +00:00
e074559eda
gnu: guile-json: Update to 4.7.3.
...
* gnu/packages/guile.scm (guile-json): Update to 4.7.3.
2022-12-11 15:23:02 -08:00
14ca72226b
gnu: perl-lingua-translit: Wrap translit program.
...
* gnu/packages/perl.scm (perl-lingua-translit)[arguments]: Add “wrap-translit”
phase.
[inputs]: Add bash-minimal.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-12-10 20:38:40 +01:00
a7f41aac7a
gnu: julia-geometrybasics: Update to 0.4.2.
...
* gnu/packages/julia-xyz.scm (julia-geometrybasics): Update to 0.4.2.
2022-12-10 21:10:10 +02:00
aa583170dc
gnu: julia-http: Update to 0.9.17.
...
* gnu/packages/julia-xyz.scm (julia-http): Update to 0.9.17.
[arguments]: Skip another test in 'disable-network-tests phase.
2022-12-10 21:10:10 +02:00
9f980cdf52
gnu: julia-chainrulescore: Skip two tests.
...
* gnu/packages/julia-xyz.scm (julia-chainrulescore)[arguments]: Add a
phase to skip two tests.
2022-12-10 21:10:09 +02:00
a5db747515
gnu: julia-colortypes: Update to 0.11.1.
...
* gnu/packages/julia-xyz.scm (julia-colortypes): Update to 0.11.1.
[arguments]: Add phase to skip broken test.
2022-12-10 21:10:09 +02:00
a87f448cbf
gnu: julia-irtools: Update to 0.4.7.
...
* gnu/packages/julia-xyz.scm (julia-irtools): Update to 0.4.7.
2022-12-10 21:10:09 +02:00
a11281b01c
gnu: julia-benchmarktools: Update to 1.3.2.
...
* gnu/packages/julia-xyz.scm (julia-benchmarktools): Update to 1.3.2.
2022-12-10 21:10:08 +02:00
71fb8f328d
gnu: julia-fixedpointnumbers: Update to 0.8.4-1.59ee94b.
...
* gnu/packages/julia-xyz.scm (julia-fixedpointnumbers): Update to
0.8.4-1.59ee94b.
[arguments]: Skip tests. Remove 'disable-failing-test phase.
2022-12-10 21:10:08 +02:00
6dbdb5fcf5
gnu: guix: Update to 1.4.0rc2.
2022-12-10 18:19:22 +01:00
61b7e96877
install: 'umount-cow-store' retries upon EBUSY.
...
Possibly fixes <https://issues.guix.gnu.org/59884 >.
* gnu/build/install.scm (umount*): New procedure.
(unmount-cow-store): Use it instead of 'umount'.
2022-12-10 14:34:35 +01:00
4473be9858
installer: Detect mapped installation devices.
...
Fixes: <https://issues.guix.gnu.org/59823 >
* gnu/installer/parted.scm (mapped-device?,
mapped-device-parent-partition): New procedures.
(eligible-devices): Detect mapped installation devices using the new
procedures.
2022-12-10 11:24:07 +01:00
1ab48edb16
installer: Detect mapped installation devices.
...
Fixes: <https://issues.guix.gnu.org/59823 >
* gnu/installer/parted.scm (mapped-device?,
mapped-device-parent-partition): New procedures.
(eligible-devices): Detect mapped installation devices using the new
procedures.
2022-12-10 11:23:27 +01:00
5051cbaeee
gnu: emacs-wisp-mode: Update to 1.0.8.
...
* gnu/packages/emacs-xyz.scm (emacs-wisp-mode): Update to 1.0.8.
2022-12-10 09:13:34 +01:00
991eb7717e
gnu: emacs-logview: Update to 0.16.
...
* gnu/packages/emacs-xyz.scm (emacs-logview): Update to 0.16.
2022-12-10 09:13:34 +01:00
0e8b8550cd
gnu: emacs-jarchive: Update to 0.9.0.
...
* gnu/packages/emacs-xyz.scm (emacs-jarchive): Update to 0.9.0.
2022-12-10 09:13:34 +01:00
3e6a8efbab
gnu: emacs-evil-nerd-commenter: Update to 3.6.0.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.6.0.
2022-12-10 09:13:34 +01:00
21bc825be8
gnu: emacs-ement: Update to 0.5.1.
...
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.5.1.
2022-12-10 09:13:33 +01:00
bafce38e9a
gnu: emacs-company-math: Update to 1.5.
...
* gnu/packages/emacs-xyz.scm (emacs-company-math): Update to 1.5.
2022-12-10 09:13:33 +01:00
23b64fbbe1
gnu: emacs-company-emoji: Update to 2.7.0.
...
* gnu/packages/emacs-xyz.scm (emacs-company-emoji): Update to 2.7.0.
2022-12-10 09:13:33 +01:00
7d48ab424b
gnu: Add emacs-acme-theme.
...
* gnu/packages/emacs-xyz.scm (emacs-acme-theme): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-10 09:13:32 +01:00
d0a038b17a
gnu: Add emacs-carp.
...
* gnu/packages/emacs-xyz.scm (emacs-carp): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-10 09:13:32 +01:00
3ae6f30767
gnu: linux-libre 4.9: Update to 4.9.335.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.335.
(linux-libre-4.9-pristine-source): Update hash.
2022-12-09 19:55:38 -05:00
19836fe4f1
gnu: linux-libre 4.14: Update to 4.14.301.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.301.
(linux-libre-4.14-pristine-source): Update hash.
2022-12-09 19:55:37 -05:00
7b0fd5a0b4
gnu: linux-libre 4.19: Update to 4.19.268.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.268.
(linux-libre-4.19-pristine-source): Update hash.
2022-12-09 19:55:37 -05:00
733396eb2b
gnu: linux-libre 5.4: Update to 5.4.226.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.226.
(linux-libre-5.4-pristine-source): Update hash.
2022-12-09 19:55:37 -05:00
773ba52f93
gnu: linux-libre 5.10: Update to 5.10.158.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.158.
(linux-libre-5.10-pristine-source): Update hash.
2022-12-09 19:55:37 -05:00
b52ffca2bb
gnu: linux-libre 5.15: Update to 5.15.82.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.82.
(linux-libre-5.15-pristine-source): Update hash.
2022-12-09 19:55:37 -05:00
67e8fd6b38
gnu: linux-libre: Update to 6.0.12.
...
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.12.
(linux-libre-6.0-pristine-source): Update hash.
2022-12-09 19:55:36 -05:00
591af24ade
installer: Print progress bars and such as soon as \r is read.
...
Fixes <https://issues.guix.gnu.org/59922 >.
Previously progress bars and related things would be buffered by
'run-external-command-with-line-hooks' until \n is read.
* gnu/installer/utils.scm (run-external-command-with-line-hooks): Use
'read-delimited' rather than 'get-line'. Pass 'concat as the last
argument.
(%display-line-hook): Remove.
(run-command): Use 'display' instead of '%display-line-hook'.
(%syslog-line-hook): Add "\n" when LINE doesn't end in \n.
(%installer-log-line-hook): Do not add an extra newline.
(installer-log-line): Add an extra newline.
2022-12-09 17:49:22 +01:00
556520a33c
services: nscd: Use nscd from 'glibc-final' on native builds.
...
This reduces the closure size of systems by removing one glibc
copy--namely (@ (gnu packages base) glibc) in addition to (@ (gnu
packages commencement) glibc-final).
* gnu/services/base.scm (<nscd-configuration>)[glibc]: Change default
value to use 'let-system' and 'canonical-package' as appropriate.
2022-12-09 16:43:25 +01:00
755c4b496e
system: Remove unused yggdrasil OS template.
...
This file was added in fe1cd098d2
2022-12-09 16:40:53 +01:00
156a881001
services: base: Use 'match-record' instead of 'match'.
...
* gnu/services/base.scm (agetty-shepherd-service)
(mingetty-shepherd-service)
(nscd.conf-file)
(udev-shepherd-service)
(udev-etc)
(gpm-shepherd-service)
(network-set-up/linux)
(network-tear-down/linux)
(static-networking-shepherd-service)
(greetd-agreety-tty-session-command)
(greetd-agreety-tty-xdg-session-command): Use 'match-record' instead of
'match'.
(guix-accounts): Use <guix-configuration> accessors.
(udev-service-type): Use <udev-configuration> accessors.
2022-12-08 13:21:53 +01:00
93d37985da
home: services: Use 'match-record' instead of 'match'.
...
* gnu/home/services/mcron.scm (home-mcron-shepherd-services): Use
'match-record' instead of 'match'.
* gnu/home/services/shells.scm (home-bash-extensions): Likewise.
* gnu/home/services/xdg.scm (serialize-xdg-desktop-entry): Likewise.
2022-12-08 13:21:46 +01:00
754a7660a1
records: 'match-record' checks fields at macro-expansion time.
...
This allows 'match-record' to be more efficient (field offsets are
computed at compilation time) and to report unknown fields at
macro-expansion time.
* guix/records.scm (map-fields): New macro.
(define-record-type*)[rtd-identifier]: New procedure.
Define TYPE as a macro and use a separate identifier for the RTD.
(lookup-field, match-record-inner): New macros.
(match-record): Rewrite in terms of 'match-error-inner'.
* tests/records.scm ("match-record, simple")
("match-record, unknown field"): New tests.
* gnu/services/cuirass.scm (cuirass-shepherd-service): Rename 'log-file'
local variable to 'main-log-file'.
* gnu/services/getmail.scm (serialize-getmail-configuration-file): Move
after <getmail-configuration-file> definition.
2022-12-08 13:21:23 +01:00
a420b4f34e
services: fail2ban: Start server in the foreground.
...
Previously, we were passing '-b', thereby starting the server in the
background. Consequently the 'start' method could complete before the
server was ready to accept connections on its socket, leading to
non-deterministic test failures.
Reported by Mathieu Othacehe <othacehe@gnu.org>.
* gnu/services/security.scm (fail2ban-shepherd-service): Change
FAIL2BAN-ACTION to invoke 'fail2ban-client'.
Change 'start' method to use 'make-forkexec-constructor'; start the
server in the foreground with '-f' and pass '-x' to force execution of
the server, as done upstream in 'fail2ban.service.in'.
2022-12-06 17:49:50 +01:00
a508b5c778
services: fail2ban: Remove unnecessary Shepherd 'modules' field.
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* gnu/services/security.scm (fail2ban-shepherd-service): Remove
unnecessary 'modules' field.
2022-12-06 17:07:46 +01:00
e45c83c397
services: fail2ban: 'stop' returns #f when the dameon is stopped.
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* gnu/services/security.scm (fail2ban-shepherd-service): Change
FAIL2BAN-ACTION to return an 'invoke' gexp.
Adjust the shepherd 'start' and 'stop' fields accordingly. Have 'stop'
return #f on success.
2022-12-06 17:07:12 +01:00
fe563a87ad
gnu: texinfo, info-reader: Do not run tests when cross-compiling.
...
Fixes a regression introduced in
a3264f31df
2022-12-06 15:22:26 +01:00
9ad14196ce
image: Clarify comment.
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* gnu/system/image.scm: Adjust comment.
2022-12-06 15:11:44 +01:00
6232959311
tests: docker-system: Increase image size.
...
* gnu/tests/docker.scm (run-docker-system-test)[vm]: Increase
'disk-image-size'.
2022-12-06 15:10:24 +01:00
f59aa79ca3
system: vm: Non-volatile 'run-vm.sh' creates a CoW image.
...
Previously, copying the image would consume a lot of space and was
I/O-intensive, to the point that the marionette connection timeout of
20s could be reached when running tests like "docker-system".
* gnu/system/vm.scm (common-qemu-options): Pass 'format=' for each
'-drive' option.
(system-qemu-image/shared-store-script)[copy-image]: New variable.
[builder]: Use it when VOLATILE? is false.
2022-12-06 15:06:35 +01:00
2493de0d1a
Revert "tests: install: Fix iso-image-installer test."
...
This reverts commit 0f66ef9aa9
2022-12-06 10:24:59 +01:00
ba4aed0f1f
install: Add missing e2fsprogs utility.
...
* gnu/system/install.scm (%installer-disk-utilities): Add e2fsprogs.
Reported-by: Adam Kandur <kefironpremise@gmail.com>
2022-12-06 10:24:55 +01:00
aeecd06ab9
system: Rename and move %base-packages-disk-utilities.
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Rationale: It is only used in INSTALLATION-OS and doesn't make sense to be
used in another context, given that file systems now automatically pull their
dependencies since commit 45eac6cdf5
2022-12-06 10:24:39 +01:00
43e18fd6c6
system: Add e2fsprogs to %base-packages-utils.
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Rationale: Even when not using an ext file system, the utilities provided by
e2fsprogs are useful, for example to set the copy-on-write attribute of a
Btrfs file system.
* gnu/system.scm (%base-packages-utils): Add e2fsprogs.
2022-12-06 10:23:09 +01:00
e692cb6035
gnu: julia-documenter: Fix test suite regression.
...
* gnu/packages/julia-xyz.scm (julia-documenter)[arguments]<#:phases>:
Substitute a work around to fix the change of 'git submodule' default
behaviour introduced by Git v2.38.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-05 22:24:38 +01:00
241772d5c0
installer: Log provenance data.
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* gnu/installer.scm (provenance-sexp): New procedure.
(installer-program)[installer-builder]: Add 'installer-log-line' call.
2022-12-05 14:57:15 +01:00
41407fda7a
services: configuration: Rename location accessor to "source-location".
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Fixes <https://issues.guix.gnu.org/59423 >.
* gnu/services/configuration.scm (define-configuration-helper): Rename the
accessor of the %location field from "NAME-location" to
"NAME-source-location".
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Reported-by: Pierre Langlois <pierre.langlois@gmx.com>
2022-12-04 21:47:19 +01:00
c8316c1e47
gnu: xdg-desktop-portal-wlr: Install missing documentation.
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* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr)[arguments]: Add a new
'install-documentation phase.
2022-12-04 01:00:00 +01:00
0ffa501f2b
Revert "gnu: make-linux-libre*: Remove input labels."
...
This reverts commit dfc6957a5a
2022-12-09 08:18:42 -05:00
7baba7ab58
gnu: julia-optimtestproblems: Add missing dependencies.
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* gnu/packages/julia-xyz.scm (julia-optimtestproblems)[arguments]: Add
missing base dependencies to julia-package-dependencies.
2022-12-09 10:15:34 +02:00
7d0a263846
gnu: julia-statsbase: Update to 0.33.10.
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* gnu/packages/julia-xyz.scm (julia-statsbase): Update to 0.33.10.
2022-12-09 10:15:34 +02:00
ec7e7f0033
gnu: julia-distances: Update to 0.10.7.
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* gnu/packages/julia-xyz.scm (julia-distances): Update to 0.10.7.
[arguments]: Skip an additional test on 32-bit systems.
2022-12-09 10:15:34 +02:00
f0af4ecc7b
gnu: julia-bfloat16s: Update to 0.4.0.
...
* gnu/packages/julia-xyz.scm (julia-bfloat16s): Update to 0.4.0.
2022-12-09 10:15:33 +02:00
b0b1ce9dca
gnu: guile-next: Update to a1a8558.
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* gnu/packages/guile.scm (guile-next): Update to a1a8558.
2022-12-09 08:46:22 +01:00
63a483265a
gnu: Add htmlq.
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* gnu/packages/rust-apps.scm (htmlq): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-09 08:46:22 +01:00
8c7c571d44
gnu: Add rust-kuchiki-0.8.
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* gnu/packages/crates-io.scm (rust-kuchiki-0.8): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-09 08:46:22 +01:00
dd9033fc49
gnu: Add guile-jtd.
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* gnu/packages/guile-xyz.scm (guile-jtd): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-09 08:46:21 +01:00
7fde9758c5
gnu: Add buku-run.
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* gnu/packages/web.scm (buku-run): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-09 08:46:21 +01:00
91641093e2
gnu: rawtherapee: Update to 5.9.
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* gnu/packages/photo.scm (rawtherapee): Update to 5.9.
[arguments]: Use gexp.
[inputs]: Remove labels.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-12-09 14:18:17 +08:00
ec9326f021
system: images: Add networking support to pine64 image.
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* gnu/system/images/pine64.scm (pine64-barebones-os) [services]: Add
dhcp-client-service-type and ntp-service-type to the list of services.
[packages]: Add nss-certs to the list of packages.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-12-09 11:02:15 +08:00
8d6feb4b10
services: wireguard: Use the parameterized wireguard package.
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* gnu/services/vpn.scm (wireguard-activation): Use the "wg" binary from
the package given to <wireguard-configuration>.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-12-09 10:53:50 +08:00
898f9adc20
gnu: gmid: Update to 1.8.6.
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* gnu/packages/web.scm (gmid): Update to 1.8.6.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-12-09 10:45:35 +08:00
dan
Mark H Weaver
Ricardo Wurmus
Petr Hodina
Ludovic Courtès
Maxim Cournoyer
jgart
Sharlatan Hellseher
EuAndreh
Paul A. Patience
Martin Schmidt
Christopher Baines
Pierre Neidhardt
Bruno Victal
Robby Zambito
Marius Bakke
Mădălin Ionel Patrașcu
Tobias Geerinckx-Rice
Joeke de Graaf
Efraim Flashner
Arun Isaac
Vagrant Cascadian
Evgeny Pisemsky
Mathieu Othacehe
Nicolas Goaziou
Leo Famulari
zimoun
Greg Hogan
Hilton Chain
Gabriel Wicki
cage