ac5f070631
gnu: python-aiohttp: Remove cythonized files.
...
* gnu/packages/python-web.scm (python-aiohttp)[source]: Add snippet to
remove cythonized files.
2022-04-14 23:30:27 +03:00
802c94034c
gnu: python-pywavelets: Remove cythonized files.
...
* gnu/packages/python-xyz.scm (python-pywavelets)[source]: Add snippet
to remove cythonized files.
[native-inputs]: Add python-cython.
2022-04-14 23:23:18 +03:00
6083372f61
gnu: python-igraph: Update to 0.9.10.
...
* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
2022-04-14 22:57:49 +03:00
d6a5bdf000
gnu: igraph: Update to 0.9.8.
...
* gnu/packages/graph.scm (igraph): Update to 0.9.8.
2022-04-14 22:57:06 +03:00
7034746e15
gnu: scregseg: Remove cythonized file.
...
* gnu/packages/bioinformatics.scm (scregseg)[source]: Add snippet to
remove cythonized file.
2022-04-14 22:55:33 +03:00
5059e7f01e
gnu: cl-py4cl: Update to 0.0.0-1.2f2a008.
...
* gnu/packages/lisp-xyz.scm (sbcl-py4cl): Update to 0.0.0-1.2f2a008.
[arguments]<#:phases>: Adjust substitutions to renamed files.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 20:31:59 +02:00
8f5b2f0693
gnu: Add emacs-org-modern.
...
* gnu/packages/emacs-xyz.scm (emacs-org-modern): New variable.
Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-04-14 11:34:03 -04:00
0ddca9d682
gnu: Add cl-numpy-file-format.
...
* gnu/packages/lisp-xyz.scm (cl-numpy-file-format, ecl-numpy-file-format,
sbcl-numpy-file-format): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
0f6aaf2f62
gnu: cl-who: Update to 1.1.4-3.07dafe9.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-who): Update to 1.1.4-3.07dafe9.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
6bf6529792
gnu: linux-libre 5.10: Update to 5.10.111.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.111.
(linux-libre-5.10-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
0b20c8e071
gnu: linux-libre 5.15: Update to 5.15.34.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.34.
(linux-libre-5.15-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
1b7f05f72c
gnu: linux-libre: Update to 5.16.20.
...
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.20.
(linux-libre-5.16-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
0a3fee824b
gnu: linux-libre 5.17: Update to 5.17.3.
...
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.3.
(linux-libre-5.17-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
aaf4b08c6b
gnu: Update linux-libre 5.17 configuration files.
...
This option that adds new hardware support appeared after the 5.17 release.
* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: Enable support for Realtek
Ethernet switch chips.
2022-04-14 10:22:54 -04:00
b0dd06bd0c
gnu: Add r-xcir.
...
* gnu/packages/bioconductor.scm (r-xcir): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 14:53:17 +02:00
16372cb347
gnu: sundials: Remove input labels.
...
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
2022-04-14 14:48:21 +02:00
61bcd648ca
gnu: sundials: Update to 6.1.1.
...
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags. Change "MPI_ENABLE" to "ENABLE_MPI".
2022-04-14 14:48:21 +02:00
5f74169e8e
daemon: Support systemd-style socket activation.
...
* nix/nix-daemon/guix-daemon.cc (SD_LISTEN_FDS_START): New macro.
(systemd_activation_sockets): New function.
(main): Use it. Remove obsolete 'printMsg' call.
* doc/guix.texi (Invoking guix-daemon): Document socket activation.
2022-04-14 14:48:20 +02:00
b9233cb9a8
publish: Support systemd-style socket activation.
...
* guix/scripts/publish.scm (systemd-socket): New procedure.
(guix-publish): Add 'style' variable. Adjust startup message depending
on whether STYLE is 'systemd.
* doc/guix.texi (Invoking guix publish): Mention socket activation.
2022-04-14 14:48:20 +02:00
17c6d00b57
publish: Use SRFI-71 instead of SRFI-11.
...
* guix/scripts/publish.scm (make-request-handler): Use 'let' instead of
'let-values'.
2022-04-14 14:48:20 +02:00
1f82602153
gnu: guile-fibers@1.1: Support cross-compilation.
...
Fixes <https://issues.guix.gnu.org/54793 >.
Reported by Mathieu Othacehe <othacehe@gnu.org>.
* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add
'support-cross-compilation' phase.
2022-04-14 14:48:20 +02:00
c9cded0955
style: Correctly read dots in pairs and improper lists.
...
Until now dots were read as symbols.
* guix/scripts/style.scm (read-with-comments)[dot]: New variable.
[dot?, reverse/dot]: New procedures.
Use 'reverse/dot' instead of 'reverse' when reading lists.
* tests/style.scm ("read-with-comments: dot notation")
("((a . 1) (b . 2))", "(a b c . boom)"): New tests.
2022-04-14 14:48:20 +02:00
919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section.
...
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
2022-04-14 13:38:30 +02:00
03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
...
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
2022-04-14 13:37:23 +02:00
c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).
...
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
2022-04-14 13:35:22 +02:00
aafd0d2309
gnu: r-absseq: Move out of experiments section.
...
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
2022-04-14 13:34:11 +02:00
ed3697c040
gnu: r-abarray: Move out of experiments section.
...
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
2022-04-14 13:32:52 +02:00
67941709e2
gnu: r-aneufinder: Move to packages section.
...
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
2022-04-14 13:31:33 +02:00
cab6657094
gnu: Add r-absseq.
...
* gnu/packages/bioconductor.scm (r-absseq): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:29:48 +02:00
a436582124
gnu: Add r-abarray.
...
* gnu/packages/bioconductor.scm (r-abarray): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:20:07 +02:00
1b2b1c30e2
gnu: Add r-acde.
...
* gnu/packages/bioconductor.scm (r-acde): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:18:07 +02:00
dd9d26bce6
gnu: Add r-wppi.
...
* gnu/packages/bioconductor.scm (r-wppi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:47:24 +02:00
55be5fc400
gnu: Add r-acme.
...
* gnu/packages/bioconductor.scm (r-acme): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:33:27 +02:00
08df30f232
gnu: Add r-acgh.
...
* gnu/packages/bioconductor.scm (r-acgh): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:59:15 +02:00
50046194a2
gnu: libfprint: Fix build, add python for the tests.
...
* gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal
as it's needed by the tests.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:54:11 +02:00
839241501a
gnu: Add r-ace.
...
* gnu/packages/bioconductor.scm (r-ace): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:50:34 +02:00
7d990e775e
gnu: r-catalyst: Update description.
...
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:43:24 +02:00
d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
2022-04-14 11:29:40 +02:00
5acc125305
gnu: r-omnipathr: Update to 3.2.8.
...
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
2022-04-14 11:29:40 +02:00
2def20d3ae
gnu: r-bgeedb: Update to 2.20.1.
...
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
2022-04-14 11:29:40 +02:00
c7cb92e494
gnu: r-gviz: Update to 1.38.4.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
2022-04-14 11:29:40 +02:00
3c7e190eea
gnu: r-catalyst: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
2022-04-14 11:29:40 +02:00
3e07fbf32a
gnu: r-mscoreutils: Update to 1.6.2.
...
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
2022-04-14 11:29:40 +02:00
40735701a8
gnu: r-singler: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
2022-04-14 11:29:40 +02:00
2a71a7b961
gnu: r-s4vectors: Update to 0.32.4.
...
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
2022-04-14 11:29:40 +02:00
51ddaf48e8
gnu: r-experimenthub: Update to 2.2.1.
...
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
2022-04-14 11:29:39 +02:00
c9e925d444
gnu: r-universalmotif: Update to 1.12.4.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
2022-04-14 11:29:39 +02:00
eadb1f53e9
gnu: r-variancepartition: Update to 1.24.1.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
2022-04-14 11:29:39 +02:00
9950ed71fc
gnu: r-cytolib: Update to 2.6.2.
...
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
2022-04-14 11:29:39 +02:00
0861d4fff5
gnu: r-rsubread: Update to 2.8.2.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
2022-04-14 11:29:39 +02:00
Efraim Flashner
Paul A. Patience
jgart
Foo Chuan Wei
Leo Famulari
Mădălin Ionel Patrașcu
Ludovic Courtès
Ludovic Courtès
Ricardo Wurmus
Attila Lendvai