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84828 Commits (1d4f2cdc827f1f0e697f339cc0229e464833ceff)

Author SHA1 Message Date
Efraim Flashner 44d44acaca
gnu: Add rust-os-str-bytes-6.
* gnu/packages/crates-io.scm (rust-os-str-bytes-6): New variable.
(rust-os-str-bytes-4): Inherit from rust-os-str-bytes-6.
2022-04-03 14:07:50 +03:00
Efraim Flashner ed2acb1b16
gnu: Add rust-print-bytes-0.5.
* gnu/packages/crates-io.scm (rust-print-bytes-0.5): New variable.
(rust-print-bytes-0.4): Inherit from rust-print-bytes-0.5.
2022-04-03 14:07:50 +03:00
Efraim Flashner 23f56d4b49
gnu: Add rust-os-str-bytes-4.
* gnu/packages/crates-io.scm (rust-os-str-bytes-4): New variable.
(rust-os-str-bytes-2): Inherit from rust-os-str-bytes-4.
2022-04-03 14:07:49 +03:00
Efraim Flashner 44ceb9ee13
gnu: Add rust-print-bytes-0.4.
* gnu/packages/crates-io.scm (rust-print-bytes-0.4): New variable.
2022-04-03 14:07:49 +03:00
Efraim Flashner d0bed3629c
gnu: Add rust-smawk-0.3.
* gnu/packages/crates-io.scm (rust-smawk-0.3): New variable.
2022-04-03 14:07:48 +03:00
Efraim Flashner 8b54123a9d
gnu: Add rust-ndarray-0.14.
* gnu/packages/crates-io.scm (rust-ndarray-0.14): New variable.
* gnu/packages/patches/rust-ndarray-0.14-remove-blas-src.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-04-03 14:07:48 +03:00
Efraim Flashner 73e2312802
gnu: rust-escargot-0.5: Update to 0.5.7.
* gnu/packages/crates-io.scm (rust-escargot-0.5): Update to 0.5.7.
[arguments]<cargo-inputs>: Remove rust-lazy-static-1. Add
rust-once-cell-1.
<cargo-development-inputs>: Replace rust-assert-fs-0.11 with 1.
2022-04-03 14:07:48 +03:00
Efraim Flashner f9fbdb5bbf
gnu: rust-terminal-size-0.1: Update to 0.1.17.
* gnu/packages/crates-io.scm (rust-terminal-size-0.1): Update to 0.1.17.
[arguments]: Skip tests.
2022-04-03 14:07:47 +03:00
Efraim Flashner c76c2bb5a4
gnu: Add rust-lipsum-0.8.
* gnu/packages/crates-io.scm (rust-lipsum-0.8): New variable.
2022-04-03 14:07:47 +03:00
Efraim Flashner c11aac2e1e
gnu: Add rust-unicode-linebreak-0.1.
* gnu/packages/crates-io.scm (rust-unicode-linebreak-0.1): New variable.
2022-04-03 14:07:46 +03:00
Efraim Flashner 99252c6d68
gnu: Add rust-uniquote-3.
* gnu/packages/crates-io.scm (rust-uniquote-3): New variable.
2022-04-03 14:07:46 +03:00
Efraim Flashner fe98984880
gnu: Add rust-version-sync-0.9.
* gnu/packages/crates-io.scm (rust-version-sync-0.9): New variable.
(rust-version-sync-0.8): Inherit from rust-version-sync-0.9.
2022-04-03 14:07:45 +03:00
Efraim Flashner cf9a58bd18
gnu: rust-os-pipe-0.9: Don't skip build.
* gnu/packages/crates-io.scm (rust-os-pipe-0.9)[arguments]: Inherit from
rust-os-pipe-1.
2022-04-03 14:07:45 +03:00
Efraim Flashner f90052a87b
gnu: Add rust-os-pipe-1.
* gnu/packages/crates-io.scm (rust-os-pipe-1): New variable.
(rust-os-pipe-0.9): Inherit from rust-os-pipe-1.
2022-04-03 14:07:45 +03:00
Efraim Flashner c4031f909f
gnu: Add rust-kstring-1.
* gnu/packages/crates-io.scm (rust-kstring-1): New variable.
2022-04-03 14:07:44 +03:00
Efraim Flashner a834083441
gnu: Add rust-document-features-0.2.
* gnu/packages/crates-io.scm (rust-document-features-0.2): New variable.
2022-04-03 14:07:41 +03:00
Jonathan Brielmaier 3471b8fae2
gnu: radicale: Update to 3.1.5.
* gnu/packages/dav.scm (radicale): Update to 3.1.5.
[source]: tags have a leading "v" now.
[arguments]: disable tests temporarily.

Tested-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2022-04-03 12:49:07 +02:00
Felix Gruber a37a8a23bd
gnu: oil: Update to 0.9.9.
* gnu/packages/shells.scm (oil): Update to 0.9.9.
  [source]: Add comment on embedded CPython like Ludo’ proposed in
  https://issues.guix.gnu.org/53642#3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brian Kubisiak 032f2e261c
home: services: zsh: Fix zshenv creation.
Fixes a regression introduced by
4935501fd9 that would skip generating
the user's ~/.config/zsh/.zshenv unless both of zshenv and
environment-variables are set in the configuration.

* gnu/home/services/shells.scm (zsh-get-configuration-files):
Generate ~/.config/zsh/.zshenv when only one of zshenv or
environment-variables is specified.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brendan Tildesley 9535b62170
gnu: mate-polkit: Improve synopsis.
* gnu/packages/mate.scm (mate-polkit): Improve synopsis.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brendan Tildesley 92b32a0592
gnu: xfce: Add notification support
* gnu/packages/xfce.scm (xfce)[inputs]: Add XFCE4-NOTIFYD.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brendan Tildesley c315fb0cac
gnu: xfce: Remove input labels.
(xfconf, libxfce4ui, xfce4-panel, xfce4-whiskermenu-plugin, xfce,
xfce4-screensaver): Remove input labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:18 +02:00
Brendan Tildesley 847a6f7c23
gnu: xfce4-screenshooter: Update to 1.9.10.
* gnu/packages/xfce.scm (xfce4-screenshooter): Update to 1.9.10.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:17 +02:00
Brendan Tildesley 47d4b6ece4
gnu: xfce4-whiskermenu-plugin: Update to 2.6.2.
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.6.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-03 12:42:17 +02:00
Vagrant Cascadian 7902d17bc8
gnu: cpufrequtils: Update to 008-1.a2f0c39.
Fixes build failure on non-x86 architectures, and brings cpufrequtils to the
state of the art from 2011.

* gnu/packages/linux.scm (cpufrequtils)[version]: Use git-version.
  [source]: Use git-fetch.
2022-04-02 19:13:21 -07:00
jgart 49d0a80738
gnu: cl-dbi: Update to 0.9.5-2.738a74d.
* gnu/packages/lisp-xyz.scm (sbcl-dbi): Update to 0.9.5-2.738a74d.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-02 16:36:49 +02:00
Chadwain Holness a27cef76c2
gnu: python-pycountry: Update to 22.3.5.
* gnu/packages/python-xyz.scm (python-pycountry): Update to 22.3.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-01 18:01:07 +02:00
Tanguy Le Carrour 8f5043bbc6
gnu: gnunet: Update to 0.16.3.
* gnu/packages/gnunet.scm (gnunet): Update to 0.16.3.
[arguments]: Enable all the tests that were disabled.
[inputs]: Use new style. [native-inputs]: Add openssl.
[home-page]: Update URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-01 18:01:07 +02:00
Ludovic Courtès 6d54f1987f
gnu: vtk: Remove input labels.
* gnu/packages/image-processing.scm (vtk)[inputs]: Remove labels.
2022-04-01 18:01:07 +02:00
Ludovic Courtès c3a20d91f9
gnu: vtk@6: Depend on Python 2.x, not 3.x.
* gnu/packages/image-processing.scm (vtk-6)[native-inputs]: Replace
PYTHON with PYTHON-2.
2022-04-01 18:01:06 +02:00
Ludovic Courtès c1093dc7a6
gnu: libtool: Add 2.4.7.
* gnu/packages/autotools.scm (libtool-2.4.7): New variable.
2022-04-01 18:01:06 +02:00
Ludovic Courtès 0fffcfa41d
gnu: libressl: Add 'release-monitoring-url' property.
* gnu/packages/tls.scm (libressl)[properties]: New field.
2022-04-01 18:01:06 +02:00
jgart b724c847a2
gnu: cl-usocket: Update to 0.8.4.
* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.4.
  [inputs]: Use new style.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-01 13:33:56 +02:00
Sébastien Lerique fc94e93c4b
gnu: libfido2: Fix cross-compilation.
* gnu/packages/security-token.scm (libfido2)[arguments]: Set the
PKG_CONFIG_EXECUTABLE variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:57:05 +03:00
Sébastien Lerique 89f3275ff5
gnu: libfido2: Use new style for inputs.
* gnu/packages/security-token.scm (libfido2)[inputs]: Use new style.
Sort alphabetically.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:40:08 +03:00
Raphaël Mélotte via Guix-patches 4cfc1c433d
gnu: tio: Update to 1.36.
* gnu/packages/terminals.scm (tio): Update to 1.36.
[native-inputs]: Add pkg-config.
[inputs]: Add libinih.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:25:31 +03:00
Christian Gelinek 9f82d1f1c0
gnu: iverilog: Add zlib dependency for LXT dump file format support.
* gnu/packages/fpga.scm (iverilog)[native-inputs]: Add zlib.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:22:58 +03:00
cage 58874999c9
gnu: gmid: Update to 1.8.3.
* gnu/packages/web.scm (gmid): Update to 1.8.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 18:19:19 +03:00
Collin J. Doering c5ffc9b65d
gnu: plantuml: Update to 1.2022.3.
* gnu/packages/uml.scm (plantuml): Update to 1.2022.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 17:52:19 +03:00
Ricardo Wurmus 05e68f31ba
gnu: python-velocyto: Set cache directory for Numba.
* gnu/packages/bioinformatics.scm (python-velocyto)[arguments]: Add phase
'set-numba-cache-dir.
2022-03-31 16:02:21 +02:00
Efraim Flashner 8f3dc994bb
gnu: wfmash: Enable test suite.
* gnu/packages/bioinformatics.scm (wfmash)[arguments]: Don't disable
tests. Add custom 'check phase based on upstream's own CI tests.
[native-inputs]: Add samtools.
2022-03-31 16:29:34 +03:00
Arun Isaac 1ca9d9e194
gnu: Add wfmash.
* gnu/packages/bioinformatics.scm (wfmash): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:53 +03:00
Arun Isaac 8524904e08
gnu: atomic-queue: Do not look for boost when cross-compiling.
* gnu/packages/cpp.scm (atomic-queue)[arguments]: When cross-compiling, add a
do-not-check-for-boost phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:53 +03:00
Arun Isaac a83918837e
gnu: atomic-queue: Run tests correctly.
* gnu/packages/cpp.scm (atomic-queue)[arguments]: In the check phase, run
tests instead of returning a function to run them.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:52 +03:00
Arun Isaac 7d331dd203
gnu: htslib: Add bzip2 and xz to inputs.
htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.

* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:52 +03:00
Arun Isaac 973ee1c91d
gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux.
* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 16:14:52 +03:00
Ricardo Wurmus a69a44bf59
gnu: python-loompy: Update to 3.0.7.
* gnu/packages/bioinformatics.scm (python-loompy): Update to 3.0.7.
[arguments]: Add build phases 'fix-h5py-error and 'set-numba-cache-dir;
respect TESTS? argument in 'check phase.
[propagated-inputs]: Add python-click, python-numba, and
python-numpy-groupies.
2022-03-31 14:37:58 +02:00
Ricardo Wurmus 38b2026515
gnu: Add python-numpy-groupies.
* gnu/packages/python-science.scm (python-numpy-groupies): New variable.
2022-03-31 14:37:58 +02:00
Arun Isaac 668d52a815
gnu: Add riscv-pk.
* gnu/packages/virtualization.scm (riscv-pk): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 15:20:11 +03:00
Arun Isaac 9afad0c16e
gnu: spike: Substitute path to dtc instead of wrapping executables.
* gnu/packages/virtualization.scm (spike)[arguments]: Delete the wrap-binary
phase. Add a configure-dtc-path phase that substitutes the absolute path to
dtc.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-03-31 15:20:08 +03:00
Ricardo Wurmus dda555fead
gnu: python-anndata: Update to 0.8.0.
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.8.0.
[arguments]: Remove build phase 'relax-dependency-requirements.
2022-03-31 10:36:31 +02:00
Ricardo Wurmus ea403bf290
gnu: python-h5py: Update to 3.6.0.
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.6.0.
[arguments]: Set HDF5_DIR variable instead of patching files.
2022-03-31 10:36:31 +02:00
Ricardo Wurmus 967d5fd5c2
gnu: python2-h5py: Detach version and source from python-h5py.
* gnu/packages/python-xyz.scm (python2-h5py): Override source and version
field.
(python-h5py)[properties]: Record python2-variant.
2022-03-31 10:36:31 +02:00
Efraim Flashner ecb2603046
gnu: weechat: Update to 3.5.
* gnu/packages/irc.scm (weechat): Update to 3.5.
[inputs]: Add zstd:lib.
2022-03-30 20:52:14 +03:00
Efraim Flashner cb00a5fd85
gnu: msmtp: Update to 1.8.20.
* gnu/packages/mail.scm (msmtp): Update to 1.8.20.
2022-03-30 20:24:55 +03:00
Efraim Flashner 96a1d6b7a0
gnu: ncdu-2: Update to 2.1.1.
* gnu/packages/ncdu.scm (ncdu-2): Update to 2.1.1.
2022-03-30 19:58:29 +03:00
Efraim Flashner 693212087d
gnu: ncdu2: Set upstream name.
* gnu/packages/ncdu.scm (ncdu-2)[properties]: New field.
2022-03-30 19:58:29 +03:00
Ricardo Wurmus 1c2da66035
gnu: anonip: Update to 1.1.0.
* gnu/packages/web.scm (anonip): Update to 1.1.0.
[source]: Fetch from git.
[arguments]: Run tests with pytest.
[native-inputs]: Add python-pytest and python-pytest-cov.
2022-03-30 15:33:22 +02:00
Mathieu Othacehe 643d05eb20
lsof: Prevent mass-rebuild.
* gnu/packages/lsof.scm (lsof): Set LINUX_CONF_CC variable only when
cross-compiling.
2022-03-30 14:40:04 +02:00
Brian Kubisiak 2387adf600
gnu: lbzip2: Fix cross-compilation.
* gnu/packages/compression.scm (lbzip2)[arguments]: Search (or
native-inputs inputs) for gnulib-tool.py.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-30 12:34:36 +02:00
Brian Kubisiak a006b7d347
gnu: lsof: Fix cross-compilation.
* gnu/packages/lsof (lsof)[arguments]: Add LINUX_CONF_CC environment
variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-30 11:50:58 +02:00
Leo Famulari 457999ce36
gnu: Mutt: Update to 2.2.2.
* gnu/packages/mail.scm (mutt): Update to 2.2.2.
2022-03-29 23:33:07 -04:00
Leo Famulari 1d62b15dc1
gnu: linux-libre 4.9: Update to 4.9.309.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.309.
(linux-libre-4.9-pristine-source): Update hash.
2022-03-29 13:40:14 -04:00
Leo Famulari 555b2b0bd0
gnu: linux-libre 4.14: Update to 4.14.274.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.274.
(linux-libre-4.14-pristine-source): Update hash.
2022-03-29 13:40:14 -04:00
Leo Famulari ef57c59046
gnu: linux-libre 4.19: Update to 4.19.237.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.237.
(linux-libre-4.19-pristine-source): Update hash.
2022-03-29 13:40:14 -04:00
Leo Famulari 5721cb284a
gnu: linux-libre 5.4: Update to 5.4.188.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.188.
(linux-libre-5.4-pristine-source): Update hash.
2022-03-29 13:40:14 -04:00
Leo Famulari ded6beb9a7
gnu: linux-libre 5.10: Update to 5.10.109.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.109.
(linux-libre-5.10-pristine-source): Update hash.
2022-03-29 13:40:13 -04:00
Leo Famulari 916b333e86
gnu: linux-libre 5.15: Update to 5.15.32.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.32.
(linux-libre-5.15-pristine-source): Update hash.
2022-03-29 13:40:13 -04:00
Leo Famulari c2a141156e
gnu: linux-libre 5.16: Update to 5.16.18.
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.18.
(linux-libre-5.16-pristine-source): Update hash.
2022-03-29 13:40:13 -04:00
Leo Famulari 89af5cd2a9
gnu: linux-libre 5.17: Update to 5.17.1.
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.1.
(linux-libre-5.17-pristine-source): Update hash.
2022-03-29 13:40:13 -04:00
cage 4b8500e7cb
gnu: gmid: Update to 1.8.2.
* gnu/packages/web.scm (gmid): Update to 1.8.2.
[native-inputs]: Remove which.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29 12:53:26 -04:00
Kyle Meyer 6c317e02ee
gnu: git-annex: Update to 10.20220322.
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220322.
[inputs]: Add ghc-http-client-restricted.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29 12:53:26 -04:00
Kyle Meyer e59069fe2b
gnu: Add ghc-http-client-restricted.
* gnu/packages/haskell-web.scm (ghc-http-client-restricted): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29 12:53:26 -04:00
Kyle Meyer f40c72327e
gnu: ghc-http-client-tls: Update to 0.3.6.1.
* gnu/packages/haskell-web.scm (ghc-http-client-tls): Update to 0.3.6.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29 12:53:26 -04:00
Kyle Meyer d2984784fd
gnu: ghc-http-client: Update to 0.7.11.
* gnu/packages/haskell-web.scm (ghc-http-client): Update to 0.7.11.
[inputs]: Add ghc-iproute.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-29 12:53:25 -04:00
Mădălin Ionel Patrașcu 591007f7d1
gnu: r-signac: Update to 1.6.0-2.458e647.
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0-2.458e647.
[propagated-inputs]: Remove r-annotationfilter, r-biocgenerics, r-biostrings,
r-biovizbase, and r-ggbio; add r-qlcmatrix and r-tidyselect.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-03-29 17:40:17 +02:00
Ricardo Wurmus 977a33139e
gnu: plink-ng: Update to 2.00a3-20220315.
* gnu/packages/bioinformatics.scm (plink-ng): Update to 2.00a3-20220315.
2022-03-29 15:33:55 +02:00
Mădălin Ionel Patrașcu d710f01957
gnu: Add r-cytobackbone.
* gnu/packages/bioinformatics.scm (r-cytobackbone): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-03-29 14:03:44 +02:00
Ricardo Wurmus 6d5964e804
gnu: pigx-sars-cov2-ww: Update to 0.0.5.
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5.
[source]: Remove patch.
[arguments]: Disable tests.
* gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-03-29 13:52:16 +02:00
Ricardo Wurmus 847acc3206
gnu: pigx-rnaseq: Update to 0.0.20.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20.
[source]: Remove patch.
[inputs]: Add megadepth.
* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-03-29 13:52:16 +02:00
Efraim Flashner 3b0c9e4c20
gnu: kpeoplevcard: Use mirror URI.
* gnu/packages/kde-pim.scm (kpeoplevcard)[source]: Use kde mirror URI.
2022-03-29 14:43:21 +03:00
Efraim Flashner d9710380a4
gnu: pulseaudio-qt: Use mirror URI.
* gnu/packages/kde-frameworks.scm (pulseaudio-qt)[source]: Use kde
mirror URI.
2022-03-29 14:43:20 +03:00
Luis Henrique Gomes Higino 53b04339fe
gnu: neovim: Update to 0.6.1.
* gnu/packages/vim.scm (neovim): Update to 0.6.1.

Build neovim with LuaJIT in the supported platforms.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29 11:56:52 +02:00
Luis Henrique Gomes Higino 1e2a25579c
gnu: Add tree-sitter.
* gnu/packages/text-editors.scm (tree-sitter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29 11:56:49 +02:00
Feng Shu 5cabe24e56
gnu: Add xfce4-dict.
* gnu/packages/xfce.scm (xfce4-dict): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29 11:36:15 +02:00
jgart ddfebdab86
gnu: poezio: Update to 0.13.2.
* gnu/packages/messaging.scm (poezio): Update to 0.13.2.
[arguments]: Remove trailing boolean and use new style.
[inputs]: Remove unused python input.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29 11:30:25 +02:00
Philippe SWARTVAGHER 39b27a17ec
gnu: openmpi: Update to 4.1.2
* gnu/packages/mpi.scm (openmpi): Update to 4.1.2

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-29 11:27:21 +02:00
Ludovic Courtès 2ae2a15b07
gnu: slurm: Install libpmi2.
* gnu/packages/parallel.scm (slurm)[source](snippet): Let PMI2 through.
[arguments]: In phase 'install-libpmi', install "contribs/pmi2".
[license]: Add 'non-copyleft'.
2022-03-29 11:26:58 +02:00
jgart 779acb0ba1
gnu: mercury: Remove trailing #T from phases and snippet.
* gnu/packages/mercury.scm (mercury)[arguments]<#:phases>: Remove trailing #T.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29 11:17:46 +02:00
jgart c116376542
gnu: python-livereload: Update to 2.6.3.
* gnu/packages/python-web.scm (python-livereload): Update to 2.6.3.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29 10:59:07 +02:00
jgart 6d0d176580
gnu: solfege: Remove trailing booleans.
* gnu/packages/music.scm (solfege): Remove trailing booleans.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29 10:56:33 +02:00
jgart a1c11cc652
gnu: python-port-for: Remove trailing boolean.
* gnu/packages/python-web.scm (python-port-for)[arguments]: Remove trailing
boolean from lambda function.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29 10:55:02 +02:00
Brian Kubisiak db7b8d1c9a
gnu: dnsmasq: Fix cross-compilation.
* gnu/packages/dns.scm (dnsmasq)[arguments]: Use PKG-CONFIG-FOR-TARGET.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-29 10:52:45 +02:00
Efraim Flashner b103d8e490
gnu: munge: Fix cross-compiling.
* gnu/packages/admin.scm (munge)[arguments]: Add configure-flag to set
path to libgcrypt prefix.  Add configure flags when cross-compiling to
assume support for pipes.
2022-03-28 21:34:09 +03:00
Efraim Flashner bf0389a380
gnu: freeipmi: Fix cross-compiling.
* gnu/packages/freeipmi.scm (freeipmi)[arguments]: Assume support for
/dev/random and /dev/urandom when cross compiling.
2022-03-28 21:34:08 +03:00
Efraim Flashner f24ddb1e90
gnu: sdsl-lite: Adjust inputs.
* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Move
libdivsufsort from here ...
[propagated-inputs]: ... to here.
2022-03-28 21:34:08 +03:00
Efraim Flashner abd8286480
gnu: rdma-core: Fix cross-compiling.
* gnu/packages/linux.scm (rdma-core)[arguments]: Add configure-flag when
cross-compiling to find pkg-config.
2022-03-28 21:34:04 +03:00
Maxim Cournoyer e91a525858
gnu: ansible: Use GUIX_PYTHONPATH in the search path specification.
* gnu/packages/admin.scm (ansible)[native-search-paths]: Use GUIX_PYTHONPATH.
2022-03-28 13:52:45 -04:00
Maxim Cournoyer 7d136be00f
gnu: openboardview: Do not recursively clone source.
This is a follow up to commit ad85ca0977.

* gnu/packages/electronics.scm (openboardview)
[source]<git-reference>: Delete the recursive? field.
2022-03-28 13:52:45 -04:00
Mădălin Ionel Patrașcu 0a5c2816ea
gnu: Add r-cycombine.
* gnu/packages/bioconductor.scm (r-cycombine): New variable.
2022-03-28 17:04:29 +02:00
Ricardo Wurmus 8e994ea512
gnu: Add r-homologene.
* gnu/packages/cran.scm (r-homologene): New variable.
2022-03-28 15:22:49 +02:00
Efraim Flashner 738da660ff
gnu: zig: Remove unneeded patch.
* gnu/packages/zig.scm (zig)[source]: Remove one patch.
* gnu/packages/patches/zig-disable-libc-note-test.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-03-28 10:31:54 +03:00
Efraim Flashner 58bc976b5b
gnu: gitolite: Add bash-minimal.
* gnu/packages/version-control.scm (gitolite)[arguments]: Remove
trailing #t.
[inputs]: Add bash-minimal.
2022-03-28 10:07:02 +03:00
Efraim Flashner 6d780dc8bf
gnu: gitolite: Don't hardcode path to svnserve.
* gnu/packages/version-control.scm (gitolite)[arguments]: Adjust custom
'patch-source phase to search for svnserve in $PATH.
2022-03-28 10:04:03 +03:00
Pier-Hugues Pellerin fff27ded10
gnu: Go: Update to 1.17.8 [security fixes].
Go 1.17.8 (released 2022-03-03) includes a security fix to the regexp/syntax
package[0], as well as bug fixes to the compiler, runtime, the go command, and
the crypto/x509 and net packages.  See the Go 1.17.8 milestone[1] on the
upstream issue tracker for details.

[0] CVE-2022-24921 and https://go.dev/issue/51112.
[1] https://github.com/golang/go/issues?q=milestone%3AGo1.17.8+label%3ACherryPickApproved

* gnu/packages/golang.scm (go-1.17): Update to 1.17.8.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-27 23:11:18 -04:00
Pier-Hugues Pellerin 8731ed8eae
gnu: Go 1.16: Update to 1.16.15 [security fixes].
Go 1.16.15 (released 2022-03-03) includes a security fix to the regexp/syntax
package[0], as well as bug fixes to the compiler, runtime, the go command, and
the net package. See the Go 1.16.15 milestone[1] on the upstream issue tracker
for details.

[0] CVE-2022-24921 and https://go.dev/issue/51112.
[2] https://github.com/golang/go/issues?q=milestone%3AGo1.16.15+label%3ACherryPickApproved

* gnu/packages/golang.scm (go-1.16): Update to 1.16.15.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-27 23:11:18 -04:00
Liliana Marie Prikler 2344fb1097
gnu: mcomix: Install messages.
* gnu/packages/image-viewer.scm (mcomix)[install-data]: Also install messages
subdirectory.
2022-03-27 09:49:02 +02:00
Leo Famulari 943d4b775b
gnu: linux-libre: Add linux-libre 5.17.
* gnu/packages/linux.scm (linux-libre-5.17-version,
linux-libre-5.17-gnu-revision, deblob-scripts-5.17,
linux-libre-5.17-pristine-source, linux-libre-5.17-source,
linux-libre-headers-5.17, linux-libre-5.17): New variables.
* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
2022-03-26 17:59:57 -04:00
Leo Famulari 50ccffb89e
gnu: Borg: Update to 1.2.0.
* gnu/packages/backup.scm (borg): Update to 1.2.0.
[source]: Adjust the list of Cython files to rebuild. Remove an obsolete
substitution. Delete the bundled xxhash. Blake2 is no longer bundled.
[native-inputs]: Add python-dateutil.
[inputs]: Add xxhash. Add python-msgpack-1.2. Remove libb2.
[arguments]: Export BORG_LIBXXHASH_PREFIX to ensure the build script can find
xxhash. Adjust the list of skipped tests and make the custom 'check' phase honor
tests?. Install some more documentation.
2022-03-26 17:53:37 -04:00
Leo Famulari b9e01b7516
gnu: Add python-msgpack-1.0.2.
* gnu/packages/python-xyz.scm (python-msgpack-1.0.2): New variable.
2022-03-26 17:53:30 -04:00
Liliana Marie Prikler ff4585d147
gnu: mcomix: Wrap missing paths.
* gnu/packages/image-viewers.scm (mcomix)[inputs]: Add gtk+.
[arguments]<#:imported-modules,#:modules>: New arguments.
<#:phases>: Add ‘glib-or-gtk-wrap’ and ‘gi-wrap’.
2022-03-26 08:52:40 +01:00
Liliana Marie Prikler 8358ad36c6
gnu: mcomix: Update to 2.0.1.
* gnu/packages/image-viewers.scm (mcomix): Update to 2.0.1.
[source]: Use sourceforge once again.
[inputs]: Add ‘python’.
[arguments]: Convert to a list of G-Expressions.
<#:tests?>: Drop.
<#:phases>: Rename ‘configure’ to ‘patch-sources’.  Also fix an assertion
error in "mcomix/image_tools.py".
No longer replace ‘build’ or ‘install’.  Add ‘install-data’ phase after
‘install’.  Use (this-package-input) to refer to the python input.
2022-03-26 08:52:40 +01:00
Feng Shu fc9ac2ac64
gnu: Add xfdashboard.
* gnu/packages/xfce.scm (xfdashboard): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2022-03-26 11:39:00 +08:00
SeerLite 2e55a4c6b9
services: xorg: Remove xf86-input-synaptics from %default-xorg-modules.
Fixes <https://issues.guix.gnu.org/35450>.

This driver isn't intended to be installed by default as it takes
precedence over the recommended xf86-input-libinput.

* gnu/services/xorg.scm (%default-xorg-modules): Remove
  xf86-input-synaptics.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-03-25 18:42:14 +01:00
fesoj000 cabda1197e
gnu: nftables: Enable json output.
* gnu/packages/linux.scm (nftables)[inputs]: Add jansson.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-25 12:21:23 +01:00
fesoj000 32a5a1cc96
gnu: nftables: Enable build of manpages.
* gnu/packages/linux.scm (nftables)[native-inputs]: Add docbook2x.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-25 12:21:23 +01:00
Feng Shu 1f46534646
gnu: Add gigolo.
* gnu/packages/xfce.scm (gigolo): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-25 12:21:23 +01:00
Imran Iqbal f2bbe73b81
gnu: Add curlie.
* gnu/packages/curl.scm (curlie): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-25 12:21:23 +01:00
raingloom 72d2aeacaa
gnu: akku: Update to 1.1.0.
* gnu/packages/package-management.scm (akku): Update to 1.1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-25 12:21:23 +01:00
Philippe SWARTVAGHER 2f7a6eaec9
gnu: hwloc: Update to 2.7.1.
* gnu/packages/mpi.scm (hwloc-2): Update to 2.7.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-25 12:21:23 +01:00
Guillaume Le Vaillant cce693a4a9
gnu: txr: Update to 274.
* gnu/packages/lisp.scm (txr): Update to 274.
2022-03-25 11:20:33 +01:00
Felix Gruber 87238a0b2c
gnu: postgis: Update to 3.2.1.
* gnu/packages/geo.scm (postgis): Update to 3.2.1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-03-25 11:15:09 +01:00
jgart 034b7b5db6
gnu: cl-clack: Update to 2.0.0-2.6fd0279.
* gnu/packages/lisp-xyz.scm (sbcl-clack): Update to 2.0.0-2.6fd0279.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-03-25 11:10:56 +01:00
jgart 6b532de90e
gnu: cl-contextl: Update to 1.0.0-2.f4fb3f5.
* gnu/packages/lisp-xyz.scm (sbcl-contextl): Update to 1.0.0-2.f4fb3f5.
  [version]: Use revision variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-03-25 11:10:30 +01:00
Guillaume Le Vaillant 78ad4749cf
gnu: prusa-slicer: Update to 2.4.1.
* gnu/packages/engineering.scm (prusa-slicer): Update to 2.4.1.
2022-03-25 11:00:24 +01:00
Leo Famulari d05fcc21cb
gnu: tremc: Update to 0.9.3.
* gnu/packages/bittorrent.scm (tremc): Update to 0.9.3.
[source]: Remove obsolete patch.
* gnu/packages/patches/tremc-fix-decodestring.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-03-24 22:50:20 -04:00
Maxim Cournoyer f252e6b8bf
gnu: Add python-flake8-isort.
* gnu/packages/python-xyz.scm (python-flake8-isort): New variable.
2022-03-24 20:57:46 -04:00
Pierre-Henry Fröhring d90b06cc42
gnu: Add python-aiopg.
* gnu/packages/python-xyz.scm (python-aiopg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-24 23:26:56 +01:00
Pierre-Henry Fröhring 66cd0ce176
gnu: Add python-psycopg2-binary.
* gnu/packages/python-xyz.scm (python-psycopg2-binary): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-24 23:26:55 +01:00
Ludovic Courtès 462f3b064f
gnu: xen: Fix compilation.
Suggested by Skyler <skyvine@protonmail.com>.

* gnu/packages/virtualization.scm (xen)[arguments]: In 'patch' phase,
substitute ".note.gnu.build-id" in 'xen.lds.S'.
2022-03-24 23:26:55 +01:00
Maxim Cournoyer 07f55a361e
gnu: Add python-robotframework-pabot.
* gnu/packages/python-xyz.scm (python-robotframework-pabot): New variable.
2022-03-24 16:08:37 -04:00
Maxim Cournoyer d8f62653e5
gnu: python-robotframework: Update to 5.0 and run acceptance tests.
* gnu/packages/python-xyz.scm (python-robotframework): Update to 5.0.
[patches]: Remove python-robotframework-ug2html.patch.  Add
python-robotframework-atest.patch and update
python-robotframework-source-date-epoch.patch.
[phases]: Use gexps.
{delete-problematic-tests}: New phase.
{check}: Also run `atest', the acceptance test suite.
[native-inputs]: Use new style.  Add python-lxml, python-pyyaml,
python-xmlschema, scrot and xvfb-run.
* gnu/packages/patches/python-robotframework-atest.patch: New file.
* gnu/packages/patches/python-robotframework-source-date-epoch.patch: Update patch.
* gnu/packages/patches/python-robotframework-ug2html.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-03-24 15:43:04 -04:00
Efraim Flashner d1851d7880
gnu: gcompris-qt: Use kde download mirror url.
* gnu/packages/education.scm (gcompris-qt)[source]: Use kde mirror url
scheme.
2022-03-24 20:50:09 +02:00
Leo Famulari f76898be6d
gnu: mpdscribble: Update to 0.24.
* gnu/packages/mpd.scm (mpdscribble): Update to 0.24.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-03-24 13:05:30 -04:00
Zhu Zihao ab98b51ef1
gnu: cogl: Fix the home page.
[[PGP Signed Part:No public key for 66397F84F76693F9 created at 2022-03-23T11:08:49+0100 using EDDSA]]

[[End of PGP Signed Part]]
>From a133e9e91f189f873f86481c7d8c3b8b4c5f755d Mon Sep 17 00:00:00 2001
From: Zhu Zihao <all_but_last@163.com>
Date: Wed, 23 Mar 2022 18:05:40 +0800
Subject: [PATCH] gnu: cogl: Fix the home page.

The website https://www.cogl3d.org/ is not owned by Project Cogl now. Since
Cogl is a part of Project Clutter, make Cogl use the same homepage as Clutter.

* gnu/packages/gnome.scm (cogl): Fix the indentation.

[homepage]: Use the same homepage as clutter.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-24 12:53:09 +01:00
fesoj000 8044a1fec9
services: murmur: Fix server program name.
* gnu/services/telephony.scm (murmur-activation):
(murmur-shepherd-service): Change file name of mumble server, which is
now called mumble-server instead of murmurd since version 1.4.x.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-03-24 12:45:48 +01:00
Artyom V. Poptsov 02c81a44c6
gnu: avr-xyz: Add simavr
* gnu/packages/avr-xyz.scm: New module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add 'avr-xyz.scm'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-24 12:45:48 +01:00
Remco van 't Veer e91c9edb20
services: dnsmasq: Add more options.
* gnu/services/dns.scm (<dnsmasq-configuration>): Add
forward-private-reverse-lookup?, strict-order? and cpe-id options.
(dnsmasq-shepherd-service): Pass added options to dnsmasq and use
match-record instead of match-lambda.
* doc/guix.texi (Guix Services): Document options added to dnsmasq.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-24 12:45:48 +01:00
Ludovic Courtès 9877408d2f
gnu: guile-fibers: Remove GNU/Hurd from 'supported-systems'.
* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[supported-systems]: New
field.
2022-03-24 12:45:47 +01:00
Ludovic Courtès c31897055d
gnu: guile-fibers: Support cross-compilation.
* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[native-inputs]: Add GUILE-3.0.
(guile2.2-fibers)[inputs, native-inputs]: Adjust accordingly.
2022-03-24 12:45:47 +01:00
Leo Famulari 24cbe07ae6
gnu: linux-libre 4.9: Update to 4.9.308.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.308.
(linux-libre-4.9-pristine-source): Update hash.
2022-03-24 01:43:29 -04:00
Leo Famulari 6d597cb492
gnu: linux-libre 4.14: Update to 4.14.273.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.273.
(linux-libre-4.14-pristine-source): Update hash.
2022-03-24 01:43:29 -04:00
Leo Famulari 757d418b43
gnu: linux-libre 4.19: Update to 4.19.236.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.236.
(linux-libre-4.19-pristine-source): Update hash.
2022-03-24 01:43:28 -04:00
Leo Famulari 220a59a33c
gnu: linux-libre 5.4: Update to 5.4.187.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.187.
(linux-libre-5.4-pristine-source): Update hash.
2022-03-24 01:43:28 -04:00
Leo Famulari 085a8a76e8
gnu: linux-libre 5.10: Update to 5.10.108.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.108.
(linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes.
2022-03-24 01:43:28 -04:00
Leo Famulari 109a008128
gnu: linux-libre 5.15: Update to 5.15.31.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.31.
(linux-libre-5.15-pristine-source, deblob-scripts-5.15): Update hashes.
2022-03-24 01:43:28 -04:00
Leo Famulari e7f15b5ce8
gnu: linux-libre: Update to 5.16.17.
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.17.
(linux-libre-5.16-pristine-source, deblob-scripts-5.16): Update hashes.
2022-03-24 01:43:24 -04:00
Liliana Marie Prikler 7258c90572
gnu: python-notmuch2: Use new style.
* gnu/packages/mail.scm (python-notmuch2)[version]: Explicitly inherit from
notmuch.
[arguments]: Use list of G-Expressions.
2022-03-23 21:12:38 +01:00
Tanguy Le Carrour 8d33d7b42f
gnu: python-notmuch2: Fix build.
* gnu/packages/mail.scm (python-notmuch2)[#:phases]: Add
‘create-notmuch-config’ and ‘patch-setup.’py after ‘enter-python-dir’.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-03-23 21:07:00 +01:00
Nicolas Goaziou 9a31942cab
gnu: python-pillow-simd: Fix version.
* gnu/packages/python-xyz.scm (python-pillow-simd)[version]: Move "v" prefix
out of version string.
2022-03-23 14:26:40 +01:00