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Author SHA1 Message Date
Vinicius Monego 1f3173786a
gnu: python-vine: Update to 5.1.0. 
* gnu/packages/python-xyz.scm (python-vine): Update to 5.1.0.
[build-system]: Use pyproject-build-system.

Change-Id: I2621eb21deb516d16e9cc50ff9237aed1b6b46b8
 2024-03-29 16:19:51 -03:00
Vinicius Monego 905a306102
gnu: python-kombu: Update to 5.3.6. 
* gnu/packages/python-xyz.scm (python-kombu): Update to 5.3.6.
[build-system]: Use pyproject-build-system.
[arguments]: Do not override the check phase. Ignore a file in #:test-flags.
[native-inputs]: Add python-botocore, python-tzdata. Remove python-pytz.
[propagated-inputs]: Add python-typing-extensions. Remove
python-cached-property.

Change-Id: I4b36effff8b17af388d56c90bf8983954adf4333
 2024-03-29 16:19:51 -03:00
Vinicius Monego a65a96aff6
gnu: python-billiard: Update to 4.2.0. 
* gnu/packages/python-xyz.scm (python-billiard): Update to 4.2.0.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-Expressions. Do not delete test files.

Change-Id: I69ec62c0c28e9c7ff6ce65f722b250f50dbb33da
 2024-03-29 16:19:48 -03:00
Sharlatan Hellseher 423ca234cb
gnu: rust-xkbcommon-dl: Fix loading of libxkbcommon-x11.so. 
This to resolve Alacritty segmentation fault reported in #68243, attemp
to fix in #69797.

* gnu/packages/crates-graphics.scm (rust-xkbcommon-dl) [arguments]:
Handle libxkbcommon-x11.so in the ‘add-absolute-library-references’
phase.

Change-Id: Ib724775210cfad7dedaa454f0f456c0dded67dcc
 2024-03-29 19:08:38 +00:00
Sharlatan Hellseher 25d66b55c2
gnu: python-distributed: Disable parallel tests. 
As seen in <https://ci.guix.gnu.org/build/3708961/log/raw>, parallel
tests introduced package build regression.

* gnu/packages/python-science.scm (python-distributed) [arguments]
<#:test-flags>: Disable parallel tests.
[native-inputs]: Remove python-pytest-xdist.

Change-Id: I3a04098604fa03ab91ceb228dd70c34c3d84db78
 2024-03-29 19:08:08 +00:00
Fabio Natali 6cde0f480d
gnu: Add python-apprise. 
* gnu/packages/python-xyz.scm (python-apprise): New variable.

Change-Id: I55b8c7b558ce34835cff31b9fac6ff3b81ff5fec
Signed-off-by: jgart <jgart@dismail.de>
 2024-03-29 12:04:32 -05:00
Mehmet Tekman 37d31495c1
gnu: krita: Update to 5.2.1. 
Due to a missing patch in the upstream libraqm, we cannot depend on the
existing libraqm library, but must instead use the one embedded in the
package. It compiles, but needs to be told to use the -fPIC flag.

Dependency fftw also does not provide the required CMake file
FFTW3Librarydepends.cmake, and only does so when compile via cmake and
not gnu. Due to the many packages that depend on fftw, a seperate
fftw-cmake was used.

* gnu/packages/kde.scm (krita): Update to 5.2.1.

Change-Id: I956451d05d8499580b909e843fd8e4418e396642
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-03-29 16:45:45 +00:00
Mehmet Tekman 74d2c8304f
gnu: fftw-cmake: New Variables. 
This is a clone of the fftw function, but uses cmake to build in order
for the FFTW3LibraryDepends.cmake file to be built, neccesary for
packages with cmake builds that depend on fftw3.

See: https://bugzilla.redhat.com/show_bug.cgi?id=1729652#c5

This variable inherits from the existing fftw3 in order to not break any
downstream packages that make use of the target optimizations given by
the gnu build.

* gnu/packages/algebra.scm (fftw-cmake): New variable.

Change-Id: Idb06f86031123de3b2621953a385f4f57d9b5cc5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-03-29 16:45:12 +00:00
jgart 82d33ff33c
gnu: python-statsmodels: Update home-page url. 
* gnu/packages/statistics.scm (home-page): Update home-page url.
[home-page]: Add package associated versioning to project website url.

Change-Id: I0909674d0f8c502aa55f4f7423308bd0eaaaf52e
 2024-03-29 11:15:10 -05:00
Sharlatan Hellseher b0b9d757a7
gnu: python-hvpy: Update to 1.1.0. 
* gnu/packages/astronomy.scm (python-hvpy): Update to 1.1.0.
[propagated-inputs]: Remove python-pydantic; add python-pydantic-2 and
python-pydantic-settings.

Change-Id: Id567cff01204d2e8d71bc49ec9ffc88b2bbb3f4e
 2024-03-29 15:08:12 +00:00
Sharlatan Hellseher a0cf3af1ad
gnu: Add python-pydantic-settings. 
* gnu/packages/python-xyz.scm (python-pydantic-settings): New variable.

Change-Id: I410edc37f17a293f3d40ce9a2ab6416ea35bae39
 2024-03-29 15:08:12 +00:00
Sharlatan Hellseher 90b636e4b3
gnu: Add python-pytest-examples. 
* gnu/packages/check.scm (python-pytest-examples): New variable.

Change-Id: I8199a7d7294c3b04134474f9f116468ac327cba8
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 0fd36bed26
gnu: Add python-cmyt. 
* gnu/packages/python-xyz.scm (python-cmyt): New variable.

Change-Id: I45caa38fc391fe7890f87f41b18d3cfa8da07c80
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 18ac6a247c
gnu: Add python-ewah-bool-utils. 
* gnu/packages/python-compression.scm (python-ewah-bool-utils): New variable.

Change-Id: Ib9730d599f66bc2b864bfd305135e367f89ba9dd
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 36ce356616
gnu: Add python-nose-exclude. 
* gnu/packages/check.scm (python-nose-exclude): New variable.

Change-Id: I5c91b682163890c822f7d4a548e92fdd287d78a2
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 632cb6aa55
gnu: Add python-astroplan. 
* gnu/packages/astronomy.scm (python-astroplan): New variable.

Change-Id: Ia13998c3ccfaab57a9d0670dbd7b4e1c1b92b57a
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 6933d9ef0a
gnu: Add python-asdf-compression. 
* gnu/packages/astronomy.scm (python-asdf-compression): New variable.

Change-Id: I221990d2f25f31dd5272a3ccc4c603da8dac353b
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 7d817bb380
gnu: Add python-asdf-zarr. 
* gnu/packages/astronomy.scm (python-asdf-zarr): New variable.

Change-Id: If26b31aeeb90a595a4d384755ba9060101ee4c8a
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 0c1c89ac65
gnu: python-pynbody: Update to 1.6.0. 
* gnu/packages/astronomy.scm (python-pynbody): Update to 1.6.0.
[arguments] <#:test-flags>: Disable more tests.

Change-Id: Icfb65fccbd1e7694a64aa52caa7b905e1b9a1a87
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 25e5d205e0
gnu: python-crds: Update to 11.17.19. 
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.19.

Change-Id: I455e3d6aeb0188d13c02e1c57aa3793689c0de5c
 2024-03-29 15:08:11 +00:00
Sharlatan Hellseher 22efd8b2ca
gnu: python-stdatamodels: Update to 1.10.0. 
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.10.0.

Change-Id: I69f98de3e98d22c636ec726ab3ce17f5d96fbb51
 2024-03-29 15:08:10 +00:00
Sharlatan Hellseher 278bc81add
gnu: python-stcal: Enable sanity check. 
* gnu/packages/astronomy.scm (python-stcal) [arguments] <#:phases>:
Revert 'sanity-check phase. Add 'silent-check-for-opencv phase.

Change-Id: Ifd3ae01d261fe6dba8f5e75d4a5134510d826a57
 2024-03-29 15:08:10 +00:00
Sharlatan Hellseher 5828d49359
gnu: python-stcal: Update to 1.6.1. 
* gnu/packages/astronomy.scm (python-stcal): Update to 1.6.1.

Change-Id: Ifca867967c302234d38bbe4fa6fcd2a1d61914cf
 2024-03-29 15:08:10 +00:00
Sharlatan Hellseher a2f7238aaa
gnu: python-specutils: Update to 1.13.0. 
* gnu/packages/astronomy.scm (python-specutils): Update to 1.13.0.

Change-Id: Ic935f471fd9f5e27745c370940e3f70f715d2ca4
 2024-03-29 15:08:10 +00:00
Sharlatan Hellseher 2b8e62cba5
gnu: python-glymur: Update to 0.12.9. 
* gnu/packages/python-xyz.scm (python-glymur): Update to 0.12.9.

Change-Id: Ifb84738df85cb6142fc5ecafa164a6dc4148a69e
 2024-03-29 15:08:10 +00:00
Sharlatan Hellseher 0a8d67cf74
gnu: python-radiospectra: Update to 0.5.0. 
* gnu/packages/astronomy.scm (python-radiospectra): Update to 0.5.0.

Change-Id: I9146be6756530e5bda59ea53e3200ed8403fd672
 2024-03-29 15:08:10 +00:00
Sharlatan Hellseher 427c271aea
gnu: python-suntime: Refresh package style. 
* gnu/packages/astronomy.scm (python-suntime): Re-indent package.
[build-system]: Swap to pyproject-build-system
[description]: Concatenate small paragraphs into single one.

Change-Id: I368f042eeab2f49c6f41b2ccf0c9a69c8abfec17
 2024-03-29 15:08:10 +00:00
Sharlatan Hellseher 00dcf62a8d
gnu: python-suntime: Update to 1.3.2. 
* gnu/packages/astronomy.scm (python-suntime): Update to 1.3.2.

Change-Id: I0af01462f3732ce9ece89a3d8bd8533563ece929
 2024-03-29 15:08:10 +00:00
Sharlatan Hellseher 3745a93a98
gnu: python-drizzle: Update to 1.15.1. 
* gnu/packages/astronomy.scm (python-drizzle): Update to 1.15.1.

Change-Id: I263ef052f61f0b6088be408b208fa31d55050429
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher 91a8fccf61
gnu: python-gwcs: Update to 0.21.0. 
* gnu/packages/astronomy.scm (python-gwcs): Update to 0.21.0.

Change-Id: I3e634366c4eaf36b76dd7e3e120fb3ed0b21dcab
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher 988c730a9a
gnu: python-astroquery: Update to 0.4.7. 
* gnu/packages/astronomy.scm (python-astroquery): Update to 0.4.7.
[arguments] <#:test-flags>: Disable one failing test.
<#:phases>: Remove 'prepare-test-environment phase. Add custom 'check
phase.

Change-Id: I159a9d765de7f8de00c4bf226febfc90d2ba6c76
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher f730baee59
gnu: python-pyvo: Update to 1.5.1. 
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.5.1.

Change-Id: I51228822626a0fac9013580a7bfb7160980ac8fb
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher 4bf460b7f5
gnu: python-asdf-astropy: Update to 0.6.0 
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.6.0.

Change-Id: I5eca1d6c113b053b8353ed43e7dfc2c7165a3139
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher dbe107658a
gnu: python-asdf-wcs-schemas: Update to 0.4.0. 
* gnu/packages/astronomy.scm (python-asdf-wcs-schemas): Update to 0.4.0.
[propagated-inputs]: Remove python-asdf-unit-schemas; add python-asdf-coordinates-schemas.

Change-Id: I491f3f7b96b11a1ac894a30aa304d3042299de99
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher 19d56a3d51
gnu: python-asdf-coordinates-schemas: Update to 0.3.0. 
* gnu/packages/astronomy.scm (python-asdf-coordinates-schemas): Update to 0.3.0.

Change-Id: Iad7848823f4b6c996aeb74919cbf252014126075
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher 250f181744
gnu: python-asdf: Update to 3.1.0. 
* gnu/packages/astronomy.scm (python-asdf): Update to 3.1.0.
[arguments] <#:phases>: Add 'fix-test-setup phase.
<#:test-arguments>: Move "-p no:legacypath" option from pyproject.toml
to here.

Change-Id: Ief5734d97d483d2e7af3ea59d702fd4697eb048a
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher dc21d8e57a
gnu: python-asdf-transform-schemas: Update to 0.5.0. 
* gnu/packages/astronomy.scm (python-asdf-transform-schemas): Update to 0.5.0.

Change-Id: Ibf122fa98260de9a472a9c2786f85e1f1098fa19
 2024-03-29 15:08:09 +00:00
Sharlatan Hellseher 87d5ae0093
gnu: python-asdf-standard: Update to 1.1.1. 
* gnu/packages/astronomy.scm (python-asdf-standard): Update to 1.1.1.
[arguments] <#:phases>: Swap 'remove-blocking-tests phases to use <#:test-flags>.
<#:test-flags>: Add more file to ignore to break cycle with python-asdf.

Change-Id: I8c80d4371adf55de77ef718a21bf8599d0fce17e
 2024-03-29 15:08:08 +00:00
Sharlatan Hellseher 5754757486
gnu: python-asdf-unit-schemas: Update to 0.2.0. 
* gnu/packages/astronomy.scm (python-asdf-unit-schemas): Update to 0.2.0.

Change-Id: Ib767a5b3e1d58205e18eb71465a1505d6ba7a7eb
 2024-03-29 15:08:08 +00:00
Sharlatan Hellseher e1e2ee1e55
gnu: python-cdflib: Enable all tests. 
* gnu/packages/astronomy.scm (python-cdflib) [arguments] <#:test-flags>:
Remove it to enable all tests.

Change-Id: I0fd44c117519efb306573d5ec603c430dbb1dc8c
 2024-03-29 15:08:08 +00:00
Sharlatan Hellseher 8aa70135ce
gnu: python-cdflib: Update to 1.2.6. 
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.6.

Change-Id: Iae2e39e756e5e9664a1b524aa1155d128dc0292c
 2024-03-29 15:08:08 +00:00
Sharlatan Hellseher 6534e69173
gnu: python-astropy-iers-data: Update to 0.2024.3.18.0.29.47. 
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to
0.2024.3.18.0.29.47.

Change-Id: Ibc243250266bc1a2c3733a05f554389d2f1dac2c
 2024-03-29 15:08:08 +00:00
Sharlatan Hellseher f5e1cccd2b
gnu: python-ginga: Update to 5.0.0. 
* gnu/packages/astronomy.scm (python-ginga): Update to 5.0.0.

Change-Id: I4b6dee90dded7606e823e1a2a6df7a5dead962d4
 2024-03-29 15:08:08 +00:00
Sharlatan Hellseher 2de864d204
gnu: python-glymur: Speed up tests. 
* gnu/packages/python-xyz.scm (python-glymur): Enable parallel
tests to speed them up.
[arguments] <#:test-flags>: Add it with "-n" option.
[native-inputs]: Add python-pytest-xdist.

Change-Id: Ied066330cc24a50b47307cefb2694675be8af0a4
 2024-03-29 15:08:08 +00:00
Sharlatan Hellseher 2962c0f025
gnu: python-stdatamodels: Speed up tests. 
gnu/packages/astronomy.scm (python-stdatamodels): Enable parallel
tests to speed them up.
[arguments] <#:test-flags>: Add "-n" option.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I43390240a4a0db48d9abab4c34d1c1c771028486
 2024-03-29 15:08:08 +00:00
Sharlatan Hellseher 9b0508e204
gnu: python-dask: Speed up tests. 
* gnu/packages/python-xyz.scm (python-dask) [arguments] <#:test-flags>:
Add option to run tests in parallel.
[native-inputs]: Add python-xdist. Reformat as a list.

Change-Id: I9b4b1c53f827e1f5d3edd0908f8e37e1a3bddb71
 2024-03-29 15:08:07 +00:00
Sharlatan Hellseher 249f0a9c9f
gnu: python-distributed: Speed up tests. 
* gnu/packages/python-science.scm (python-distributed) [arguments]
<#:test-flags>: Add option to run tests in parallel. Disable 3 more
flaky tests.
[native-inputs]: Add python-pytest-xdist. Sort alphabetically.

Change-Id: I588c1a1dc82e3208cc1eeeefbdc58fb080775ac0
 2024-03-29 15:08:07 +00:00
Sharlatan Hellseher 1a3aa6b19b
gnu: python-zarr: Speed up tests. 
* gnu/packages/python-xyz.scm (python-zarr): Use G-expressions.
[arguments] <#:test-flags>: Parallelize tests to speed them up.
<#:phases>: 'disable-service-tests remove trailing #t from
lambda. Use standard 'check phase.
[native-inputs]: Add python-fsspec, python-h5py,
python-pytest-doctestplus, python-pytest-timeout, and
python-pytest-xdist.

Change-Id: I3fc4e2a1649ad9f95ed9e3fe87e3f57ad4f58af8
 2024-03-29 15:08:07 +00:00
Sharlatan Hellseher bb1e74a96f
gnu: python-partd: Enable tests. 
Newer version of the project is migrated to pyproject.toml, this change
may help to prepare for the future upgrade.

* gnu/packages/python-xyz.scm (python-partd) [build-system]: Swap to
pyproject-build-system, allowing to detect tests and run them.

Change-Id: Ia4375b83cea6dcbf7781b3dc40f544261075d2ca
 2024-03-29 15:08:07 +00:00
Sharlatan Hellseher 950b10540c
gnu: python-zarr: Update to 2.17.1. 
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.17.1.

Change-Id: Id7873b68bb82400f66539d03fe9a357deb61d58c
 2024-03-29 15:08:07 +00:00