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84889 Commits (29bfd56aa0261449a931b50981d0c9780f7a03f0)

Author SHA1 Message Date
Ricardo Wurmus 29bfd56aa0
gnu: r-qdnaseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.30.0.
[propagated-inputs]: Remove r-future.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 19fb6bae8c
gnu: r-cghcall: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.56.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus c5cb1e0118
gnu: r-cghbase: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.54.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus c6cff9686b
gnu: r-marray: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.72.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 7bda0a9220
gnu: r-matrixgenerics: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.6.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 0d11010cef
gnu: r-chippeakanno: Update to 3.28.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus aad12099dd
gnu: r-graph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.72.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus d6a3debb6d
gnu: r-multtest: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.50.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 8826132332
gnu: r-mbkmeans: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.10.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 6f6478b175
gnu: r-diffbind: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus d05485f7f7
gnu: r-greylistchip: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.26.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 88c203a85f
gnu: r-apeglm: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.16.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus c6c1f9fc72
gnu: r-qvalue: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.26.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 980a36cbee
gnu: r-oligo: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.58.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 0cffd15771
gnu: r-oligoclasses: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.56.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 319038ace3
gnu: r-geneplotter: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.72.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus c3a3c417c0
gnu: r-zlibbioc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.40.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 469cf86fa2
gnu: r-xvector: Update to 0.34.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.34.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 0b341967e3
gnu: r-vsn: Update to 3.62.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.62.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus e174313541
gnu: r-variantannotation: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.40.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 47c3ec038e
gnu: r-tximport: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.22.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus bb69853f89
gnu: r-topgo: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.46.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 442a355026
gnu: r-systempiper: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus c3d9b4b097
gnu: r-sva: Update to 3.42.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.42.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 679abce085
gnu: r-summarizedexperiment: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.24.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 2a3f2f002e
gnu: r-structuralvariantannotation: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 41e1bf39aa
gnu: r-slingshot: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 91c78f9527
gnu: r-trajectoryutils: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.2.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus 9398e3e047
gnu: r-simplifyenrichment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.4.0.
 2021-11-07 22:34:41 +00:00
Ricardo Wurmus bf90dbefcc
gnu: r-shortread: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.52.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus f1dedc13dc
gnu: r-seqpattern: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 09d921d442
gnu: r-seqlogo: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.60.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus d076801410
gnu: r-rtracklayer: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.54.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus f0774df7c1
gnu: r-rsamtools: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.10.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus e38d619476
gnu: r-rhdf5filters: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.6.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 148e520d4a
gnu: r-rhdf5: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 559953466e
gnu: r-reportingtools: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.34.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus cbf8dbc3cb
gnu: r-regioner: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus c4908b9eff
gnu: r-rcas: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.20.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 3caf93321d
gnu: r-rbgl: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.70.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus dc4cc2aa32
gnu: r-protgenerics: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.26.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 78fd768566
gnu: r-pcamethods: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.86.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus ada8646a38
gnu: r-organismdbi: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.36.0.
 2021-11-07 22:34:40 +00:00
Ricardo Wurmus 3de4beb013
gnu: r-mzr: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.28.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 62d157a2e2
gnu: r-mzid: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.32.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus a6402a7fee
gnu: r-msnid: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.28.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 35e1bdc5b8
gnu: r-msnbase: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus b96f76aff0
gnu: r-mutationalpatterns: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.0.
[propagated-inputs]: Add r-rcolorbrewer.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus d4a0101ad9
gnu: r-methylkit: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.20.0.
 2021-11-07 22:34:39 +00:00
Ricardo Wurmus 0465cc8251
gnu: r-limma: Update to 3.50.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.0.
 2021-11-07 22:34:39 +00:00