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113967 Commits (3c8d7bd3c6c0949986e5a870d3ca2d607f5184bb)

Author SHA1 Message Date
Ricardo Wurmus 3c8d7bd3c6
gnu: r-manor: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-manor): Update to 1.72.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 6e5c2c48df
gnu: r-makecdfenv: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.76.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 4d1208e654
gnu: r-made4: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-made4): Update to 1.74.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 343036f151
gnu: r-maaslin2: Update to 1.13.0. 
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.13.0.
[propagated-inputs]: Remove r-mumin and r-rmarkdown.
[arguments]: Remove.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus d1da543257
gnu: r-limma: Update to 3.56.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus b962e908a0
gnu: r-keggrest: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 2c32ed3955
gnu: r-interactivedisplaybase: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.38.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus ab9cdb4082
gnu: r-impute: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 8d8a7d55e2
gnu: r-rhtslib: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.2.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus c3882920fd
gnu: r-hpar: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.42.0.
[propagated-inputs]: Add r-experimenthub.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus fdc4c55da2
gnu: r-harshlight: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.72.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus f7a3988fc7
gnu: r-gseabase: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.62.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 57e4aab4ee
gnu: r-gostats: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.66.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 96613abcc5
gnu: r-globaltest: Update to 5.54.0. 
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.54.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 5cb6453b43
gnu: r-glad: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-glad): Update to 2.64.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus a6f4e6e7fb
gnu: r-genomicranges: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.52.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 7c75371b19
gnu: r-genomicfiles: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 25ffc3d9ef
gnu: r-genomicfeatures: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 8e72841e03
gnu: r-genomicalignments: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus d87887a2ba
gnu: r-genomeinfodb: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus dac6f08730
gnu: r-genomation: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.32.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus ff563c9a60
gnu: r-geneoverlap: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus d7a10c3d52
gnu: r-genefilter: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.0.
[propagated-inputs]: Remove r-biocgenerics; add r-matrixgenerics.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 70c3d4ac37
gnu: r-gage: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.50.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 476042884c
gnu: r-fastseg: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.46.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 3ce5803cac
gnu: r-ensembldb: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus f9b6a2ad85
gnu: r-enmix: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus cbe7726d68
gnu: r-edger: Update to 3.42.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 2a1f12e3d1
gnu: r-edaseq: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.34.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 59cecee237
gnu: r-dittoseq: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.12.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 70784f1dcf
gnu: r-dirichletmultinomial: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.42.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 876c2dcb74
gnu: r-diffcyt: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.20.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f327d05ecc
gnu: r-dexseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.46.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus dc78185fc7
gnu: r-deseq2: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.0.
[propagated-inputs]: Remove r-geneplotter.
[native-inputs]: Add r-rmarkdown.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 176c45cb21
gnu: r-complexheatmap: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.16.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f86ea9868a
gnu: r-chipseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.50.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 219901a7b2
gnu: r-chipseeker: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.36.0.
[propagated-inputs]: Remove r-ggvenndiagram and r-rcolorbrewer; add r-aplot, r-tibble,
and r-yulab-utils.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 6c700d8b3a
gnu: r-champ: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-champ): Update to 2.30.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 7b4443f365
gnu: r-category: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.66.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 5d526f71c8
gnu: r-bsgenome: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.68.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 9201a7728b
gnu: r-biovizbase: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.48.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus bbd90f85b9
gnu: r-biostrings: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.68.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus c9d5ec9e66
gnu: r-biocparallel: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus d0199e0c5c
gnu: r-biomart: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 766fb8a21c
gnu: r-biobase: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.60.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus b8c4b8b44f
gnu: r-bamsignals: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.32.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 968878ef27
gnu: r-aroma-light: Update to 3.30.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.30.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 83b381a95b
gnu: r-annotationhub: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.8.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f6c878674f
gnu: r-annotationforge: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus aa97ff9c34
gnu: r-annotationfilter: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.24.0.
 2023-04-29 20:27:55 +02:00