3e9dc2754e
gnu: icecat: Remove vestigial icecat-78-makeicecat.patch.
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This is a followup to commit a63231003e
2021-12-03 04:45:15 -05:00
c0d9ba22d0
gnu: cuirass: Update to 1.1.0-6.df8837c.
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* gnu/packages/ci.scm (cuirass): Update to 1.1.0-6.df8837c.
2021-12-03 10:41:37 +01:00
fcf7e6513c
gnu: python-pandocfilters: Update to 1.5.0.
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* gnu/packages/textutils.scm (python-pandocfilters): Update to 1.5.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-03 10:41:37 +01:00
d49e7a592f
gnu: icecat: Fix CVE-2021-43527.
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* gnu/packages/patches/icecat-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat-source): Apply it.
2021-12-03 04:37:42 -05:00
080a5de2ee
gnu: nss: Fix CVE-2021-43527 via graft.
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* gnu/packages/patches/nss-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nss.scm (nss/fixed): New variable
(nss)[replacement]: New field.
2021-12-03 04:37:21 -05:00
345b341919
gnu: openjdk16: Use MAKE-FILE-WRITABLE.
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* gnu/packages/java.scm (openjdk16)[arguments]: Do not shell out to "chmod".
2021-12-02 23:58:56 +01:00
68e71fbb17
gnu: Add openjdk17.
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* gnu/packages/java.scm (openjdk17): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-02 23:58:53 +01:00
f697fc267c
doc: Give more details about generating patches with base commit information.
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* doc/contributing.texi (Submitting Patches): Talk more about '--base'.
2021-12-02 14:31:13 -05:00
1f5c1bc024
gnu: python2-decorator: Downgrade to 4.3.0
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* gnu/packages/python-xyz.scm (python2-decorator): Keep at 4.3.0.
(python-decorator)[properties]: Add python2-variant.
2021-12-02 18:56:29 +01:00
a2423c0ca4
gnu: ribodiff: Remove trailing #T.
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* gnu/packages/bioinformatics.scm (ribodiff)[arguments]: Remove trailing #T
from build phase.
2021-12-02 18:32:33 +01:00
1123d25830
gnu: ribodiff: Disable broken test.
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* gnu/packages/bioinformatics.scm (ribodiff)[arguments]: Add build phase
'disable-plot-test.
2021-12-02 18:32:10 +01:00
f28f5be11d
gnu: python2-statsmodels: Downgrade to 0.9.0.
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* gnu/packages/statistics.scm (python2-statsmodels): Downgrade to 0.9.0.
2021-12-02 18:31:38 +01:00
31d372cd8a
gnu: khmer: Fix build with Python 3.8.
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* gnu/packages/bioinformatics.scm (khmer)[source]: Remove trailing #T.
[arguments]: Remove trailing #T from build phases; add build phase
'python-3.8-compatibility.
2021-12-02 18:24:31 +01:00
32d5fb01f8
gnu: python-biom-format: Update to 2.1.10.
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* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.10.
[source]: Simplify snippet.
[arguments]: Add phase 'relax; remove trailing #T from other build phases.
[propagated-inputs]: Add python-anndata; replace python-pandas-0.25 with
python-pandas.
2021-12-02 18:02:07 +01:00
fab80c3672
gnu: Add trayer-srg.
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* gnu/packages/wm.scm (trayer-srg): New variable.
Co-authored-by: Disseminate Dissent <disseminatedissent@protonmail.com>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:44:31 +01:00
28ad55a59d
gnu: pardre: Update to 2.2.5.
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* gnu/packages/bioinformatics.scm (pardre): Update to 2.2.5.
[arguments]: Remove trailing #T and update comment about tests.
2021-12-02 15:40:46 +01:00
fc20fad6f7
gnu: pardre: Use C++ bindings for MPI.
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* gnu/packages/bioinformatics.scm (pardre)[inputs]: Replace openmpi with
openmpi-c++.
2021-12-02 15:40:46 +01:00
2d6be35ea2
gnu: Add openmpi-c++.
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* gnu/packages/mpi.scm (openmpi-c++): New variable.
2021-12-02 15:40:45 +01:00
df4f960cb8
gnu: Add libconfini.
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* gnu/packages/cpp.scm (libconfini): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:38:17 +01:00
2d92b3bbb6
gnu: shotcut: Update to 21.10.31.
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* gnu/packages/video.scm (shotcut): Update to 21.10.31.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
82e5a1b4c3
gnu: kdenlive: Update to 21.08.3.
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* gnu/packages/kde.scm (kdenlive): Update to 21.08.3.
[arguments]: Pass "-DBUILD_TESTING=off" to #:configure-flags as tests are
currently disabled.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
6fc0cfe1b5
gnu: mlt: Update to 7.2.0.
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* gnu/packages/video.scm (mlt): Update to 7.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
e8d5dd5c9b
gnu: ccls: Update to 0.20210330.
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* gnu/packages/cpp.scm (ccls): Update to 0.20210330.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:26:05 +01:00
a4cc1ae446
gnu: guile-udev: Update to 0.2.0
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* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:05:28 +01:00
46b73fd22d
gnu: python-ipython: Update to 7.20.0.
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* gnu/packages/python-xyz.scm (python-ipython): Update to 7.20.0.
2021-12-02 13:42:17 +01:00
5723503f9f
gnu: python-ipython: Remove trailing #T.
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* gnu/packages/python-xyz.scm (python-ipython)[arguments]: Remove trailing #T
from build phases.
2021-12-02 13:42:17 +01:00
923a121751
gnu: yggdrasil: Simplify build phases.
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* gnu/packages/networking.scm (yggdrasil)[arguments]: Rewrite custom
'build phase reusing go-build-system 'build phase. Remove custom
'install phase.
2021-12-02 14:28:06 +02:00
d19e646c83
gnu: go-golang-zx2c4-com-wireguard: Fix downloading source.
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* gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard)[source]:
Adjust commit string in git-reference.
2021-12-02 14:13:27 +02:00
e0755470f8
gnu: go-github-com-vividcortex-ewma: Adjust import-path.
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* gnu/packages/golang.scm (go-github-com-vividcortex-ewma)[arguments]:
Adjust import-path to location other go packages expect it to be.
2021-12-02 14:12:31 +02:00
052f56e5a6
gnu: guix: Update to 8cc099b.
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* gnu/packages/package-management.scm (guix): Update to 8cc099b
2021-12-02 12:52:59 +01:00
a8fff63daa
gnu: Add python-mygene.
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* gnu/packages/bioinformatics.scm (python-mygene): New variable.
2021-12-02 11:57:28 +01:00
b15a525703
gnu: Add python-biothings-client.
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* gnu/packages/bioinformatics.scm (python-biothings-client): New variable.
2021-12-02 11:57:13 +01:00
c2c63a00de
gnu: Add r-scdblfinder.
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* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
2021-12-02 10:03:07 +01:00
bef86fed3e
Revert "gnu: godot: Update to 3.4."
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This reverts commit dd4365efa1https://debbugs.gnu.org/cgi/bugreport.cgi?bug=52233#20
2021-12-02 01:27:12 -05:00
934a246409
gnu: cl-tooter: Update to 1.0.0-3.ec97bee.
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* gnu/packages/lisp-xyz.scm (cl-tooter): Update to 1.0.0-3.ec97bee.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:12:58 -05:00
e9e2204897
gnu: cl-i18n: Update to 0.5.1-1.4216fe9.
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* gnu/packages/lisp-xyz.scm (cl-i18n): Update to 0.5.1-1.4216fe9.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:12:57 -05:00
dd4365efa1
gnu: godot: Update to 3.4.
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* gnu/packages/game-development.scm (godot): Update to 3.4.
[source]: Add new bundled dependencies to the origin snippet.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:02:47 -05:00
7a171235af
gnu: linux-libre 4.19: Update to 4.19.219.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.219.
(linux-libre-4.19-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
6f18f35297
gnu: linux-libre 5.4: Update to 5.4.163.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.163.
(linux-libre-5.4-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
f01588736c
gnu: linux-libre 5.10: Update to 5.10.83.
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* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.83.
(linux-libre-5.10-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
c3ec5eaa75
gnu: linux-libre: Update to 5.15.6.
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* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.6.
(linux-libre-5.15-pristine-source): Update hash.
2021-12-01 18:43:02 -05:00
d53679c531
gnu: Remove couger.
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This package has been moved to the Guix Past channel.
* gnu/packages/bioinformatics.scm (couger): Remove variable.
2021-12-02 00:32:12 +01:00
cd40978a4b
gnu: randomjungle: Fix compatibility errors.
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* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase
'fix-compatibility-errors to patch type errors.
2021-12-02 00:32:12 +01:00
205a65839a
news: Add entry about Icedove 91.
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* etc/news.scm: New entry.
2021-12-01 22:52:02 +01:00
a63231003e
gnu: icecat: Remove leftovers of release 78.
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No longer required as icedove is now based on the 91 branch.
* gnu/packages/gnuzilla.scm (mozilla-78-compare-locales): Remove.
(all-mozilla-78-locales): Remove.
(%icecat-78-version): Remove.
(icecat-78-source): Remove.
2021-12-01 22:07:00 +01:00
52cb5cf5b8
gnu: icedove: Update to 91.3.2.
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The profile folder moved from `~/.icedove` to `~/.thunderbird`. You may
need to migrate (copy) your profile over.
* gnu/packages/gnuzilla.scm (icedove): Update to 91.3.2.
[source]: Switch back to icecat-source.
[arguments]: `obj-x86_64-pc-linux-gnu` folder is now generated during
build, so it can't deleted in front. Remove surounding `'` from
MOZ_DEDICATED_PROFILES to follow source code. MOZ_APP_BASENAME and
MOZ_APP_DISPLAYNAME are no longer set in `comm/mail/confvars.sh`. Update
path of `customizeToolbar.js`.
Delete `'bootstrap` phase and no longer set AUTOCONF variable as the
autoconf build part was removed. Set MACH_USE_SYSTEM_PYTHON and
MOZ_APP_NAME, the latter is the binary name.
`--enable-calendar` flag got removed. Use bundled NSS until
core-updates merge.
[inputs]: Update to `icu4c-69` and `nspr-4.32`. Use bundled NSS for now.
[native-inputs]: Switch to comm-esr91 branch. Remove autoconf, add m4.
Update rust and cargo to 1.51. Use `rust-cbindgen-0.19`.
2021-12-01 22:07:00 +01:00
f1a2e90409
gnu: Add nspr@4.32.
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Required for icecat/icedove 91.
* gnu/packages/nss.scm (nspr-4.32): New variable.
2021-12-01 22:06:54 +01:00
d7d7b57965
gnu: emacs-citar: Remove unnecessary input.
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* gnu/packages/emacs-xyz.scm (emacs-citar)[propagated-inputs]: Remove emacs-helm-bibtex.
2021-12-01 22:00:45 +01:00
2b08cc968b
gnu: bullet: Update to 3.17.
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* gnu/packages/game-development.scm (bullet): Update to 3.17.
[arguments]<#:configure-flags>: Disable access to third-party libs.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01 21:54:41 +01:00
c7c4f80881
gnu: Update Trezor support.
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* gnu/packages/patches/python-trezor-agent-fix-argv0.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Apply previous removal.
* gnu/packages/finance.scm (python-trezor-agent): Update to 0.14.4.
[source]: Remove now useless patch.
(python-mnemonic): Update to 0.20.
(python-trezor): Update to 0.12.4
(trezor-agent): Update to 0.11.0-1.
[source]: Add file-name field.
[arguments]: Remove trailing #T in phases.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01 18:05:26 +01:00
Mark H Weaver
Mathieu Othacehe
jgart
Ricardo Wurmus
Arne Babenhauserheide
Leo Famulari
Liliana Marie Prikler
Vinicius Monego
Artyom V. Poptsov
Efraim Flashner
Ludovic Courtès
cage
Andy Tai
Jonathan Brielmaier
Nicolas Goaziou
Attila Lendvai