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76502 Commits (48a6f1d351a0f119ca25ae9b66f535dd2300ac7d)

Author SHA1 Message Date
Marius Bakke 48a6f1d351
gnu: python-dask: Remove bundled versioneer. 
* gnu/packages/python-xyz.scm (python-dask)[source](snippet): New field.
[arguments]: Add versioneer phase.
[native-inputs]: Add PYTHON-VERSIONEER.
 2021-12-13 23:28:58 +01:00
Marius Bakke 99e0c4bc74
gnu: python-versioneer: Add support for Guix build directories. 
* gnu/packages/patches/python-versioneer-guix-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-versioneer)[source](patches): New field.
 2021-12-13 23:28:58 +01:00
Marius Bakke 5940d4cfed
gnu: python-versioneer: Update to 0.21. 
* gnu/packages/python-xyz.scm (python-versioneer): Update to 0.21.
 2021-12-13 23:28:58 +01:00
Marius Bakke e1dc580bdf
gnu: fossil: Update to 2.17. 
* gnu/packages/version-control.scm (fossil): Update to 2.17.
[source](uri): Adjust.
[inputs]: Change from SQLITE to SQLITE-NEXT.
[arguments]: Remove trailing #t's.
 2021-12-13 23:28:58 +01:00
Marius Bakke 50b36f688b
gnu: SQLite. Add 3.37. 
* gnu/packages/sqlite.scm (sqlite-next): New variable.
 2021-12-13 23:28:58 +01:00
Marius Bakke dab8fd7ed4
gnu: SQLite: Remove 3.33. 
* gnu/packages/sqlite.scm (sqlite-3.33): Remove variable.
 2021-12-13 23:28:58 +01:00
Marius Bakke 467485a50a
gnu: Remove superfluous "linux-libre-headers" inputs. 
This input is already propagated from glibc.

* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Remove LINUX-LIBRE-HEADERS-5.10.
* gnu/packages/linux.scm (btrfs-progs)[native-inputs]: Likewise.
* gnu/packages/accessibility.scm (brltty)[inputs]: Remove LINUX-LIBRE-HEADERS.
* gnu/packages/graphics.scm (directfb)[inputs]: Likewise.
* gnu/packages/gstreamer.scm (libdc1394)[inputs]: Likewise.
* gnu/packages/linux.scm (python-evdev)[native-inputs]: Likewise.
(bcc, bpftrace)[inputs]: Likewise.
* gnu/packages/networking.scm (lksctp-tools)[inputs]: Likewise.
* gnu/packages/video.scm (tslib)[inputs]: Likewise.
* gnu/packages/web-browsers.scm (links)[native-inputs]: Likewise.
* gnu/packages/cdrom.scm (cdrtools)[inputs]: Likewise.
[arguments]: Adjust accordingly.
* gnu/packages/lirc.scm (lirc)[inputs, arguments]: Likewise.
* gnu/packages/vpn.scm (xl2tpd)[inputs, arguments]: Likewise.
 2021-12-13 23:28:57 +01:00
Maxim Cournoyer 6dffced09e
Merge branch 'core-updates-frozen' into 'master'. 
At last!
 2021-12-13 16:29:21 -05:00
Ludovic Courtès e3196755e6
gnu: Further simplify package inputs. 
This is the result of running:

  ./pre-inst-env guix style --input-simplification=safe

and manually undoing changes on a dozen of packages to reduce
rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
 2021-12-13 22:15:07 +01:00
Nicolas Goaziou b603554ed0
gnu: emacs-geiser-guile: Update to 0.19. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-guile): Update to 0.19.
[inputs]: Update to guile-3.0.
 2021-12-13 21:59:45 +01:00
Nicolas Goaziou cd3c3965c2
gnu: emacs-solaire-mode: Update to 2.0.4. 
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): Update to 2.0.4.
 2021-12-13 21:51:47 +01:00
Maxim Cournoyer fc9ca46aa6
gnu: Add python-robotframework-datadriver. 
* gnu/packages/python-xyz.scm (python-robotframework-datadriver): New variable.
 2021-12-13 12:34:00 -05:00
Maxim Cournoyer 33f80689a9
gnu: Add python-robotframework-stacktrace. 
* gnu/packages/python-xyz.scm (python-robotframework-stacktrace): New variable.
 2021-12-13 12:33:59 -05:00
Ludovic Courtès 2194451544
gnu: optionmatrix: Avoid deprecated 'texlive-union'. 
* gnu/packages/finance.scm (optionmatrix)[native-inputs]: Use
'texlive-updmap.cfg'.
 2021-12-13 17:57:15 +01:00
Ludovic Courtès 8394619bac
gnu: Simplify package inputs. 
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
 2021-12-13 17:48:25 +01:00
Ludovic Courtès 148a03b971
gnu: binutils@2.33: Remove non-applicable patches. 
* gnu/packages/base.scm (binutils-2.33)[source]: Add empty 'patches' field.
 2021-12-13 13:58:31 +01:00
Ludovic Courtès 0b1f5d2477
gnu: python-aws-xray-sdk: Set PYTHONPATH when running tests. 
* gnu/packages/python-web.scm (python-aws-xray-sdk)[arguments]: Check:
Set PYTHONPATH.
 2021-12-13 13:55:17 +01:00
Ludovic Courtès 063dfc5636
gnu: python-jsonpickle: Update to 1.5.2. 
This brings support for NumPy 1.20+, which we need.

* gnu/packages/python-web.scm (python-jsonpickle): Update to 1.5.2.
 2021-12-13 13:54:38 +01:00
Ludovic Courtès 90bee69fca
gnu: python-jose: Add missing dependency. 
* gnu/packages/python-web.scm (python-jose)[propagated-inputs]: Add
PYTHON-ECDSA.
 2021-12-13 13:54:15 +01:00
Mădălin Ionel Patrașcu 5f32468acf
gnu: Add r-chromvarmotifs. 
* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-13 13:38:27 +01:00
Ludovic Courtès 1052ae5f03
Merge branch 'master' into core-updates-frozen 2021-12-13 11:49:15 +01:00
Ricardo Wurmus cf2251b9f7
gnu: Add r-sanssouci. 
* gnu/packages/bioconductor.scm (r-sanssouci): New variable.
 2021-12-13 11:17:43 +01:00
Ricardo Wurmus 73d2fb94e3
gnu: Add r-isoformswitchanalyzer. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
 2021-12-13 10:54:16 +01:00
Ricardo Wurmus 495646aa73
gnu: Add r-drimseq. 
* gnu/packages/bioconductor.scm (r-drimseq): New variable.
 2021-12-13 10:54:05 +01:00
Marcel Schilling 531a69ecb6
gnu: Add r-dearseq. 
* gnu/packages/bioconductor.scm (r-dearseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-13 09:50:58 +01:00
Leo Famulari efd4d36a28
gnu: linux-libre 4.4: Update to 4.4.294. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.294.
(linux-libre-4.4-pristine-source): Update hash.
 2021-12-12 23:14:01 -05:00
Leo Famulari 912db36d27
gnu: linux-libre 4.9: Update to 4.9.292. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.292.
(linux-libre-4.9-pristine-source): Update hash.
 2021-12-12 23:14:01 -05:00
Leo Famulari a9dfc3781a
gnu: linux-libre 4.14: Update to 4.14.257. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.257.
(linux-libre-4.14-pristine-source): Update hash.
 2021-12-12 23:14:01 -05:00
Leo Famulari 56778b40a3
gnu: linux-libre 4.19: Update to 4.19.220. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.220.
(linux-libre-4.19-pristine-source): Update hash.
 2021-12-12 23:14:01 -05:00
Leo Famulari ef8c464e17
gnu: linux-libre 5.4: Update to 5.4.164. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.164.
(linux-libre-5.4-pristine-source): Update hash.
 2021-12-12 23:14:01 -05:00
Leo Famulari 50c529c574
gnu: linux-libre 5.10: Update to 5.10.84. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.84.
(linux-libre-5.10-pristine-source): Update hash.
 2021-12-12 23:14:00 -05:00
Leo Famulari e49f9f68dc
gnu: linux-libre: Update to 5.15.7. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.7.
(linux-libre-5.15-pristine-source): Update hash.
 2021-12-12 23:13:57 -05:00
Marius Bakke 869d69ad32
gnu: gaupol: Don't attempt to compile bytecode twice. 
* gnu/packages/video.scm (gaupol)[arguments]: Disable needless compilation
with a substitution.  While here, remove trailing #t's.
 2021-12-12 23:26:02 +01:00
Marius Bakke dd5851e088
gnu: mps-youtube: Disable sanity check. 
* gnu/packages/video.scm (mps-youtube)[arguments]: Add #:phases.
 2021-12-12 23:26:02 +01:00
Marius Bakke 2ac8a13a6a
gnu: smplayer: Remove reference to %outputs. 
...which no longer exists in qt-build-system.

* gnu/packages/video.scm (smplayer)[arguments]: Turn into gexp.  Use #$OUTPUT
instead of %OUTPUTS.  Remove trailing #true's.
 2021-12-12 23:26:01 +01:00
Marius Bakke 9896e828ca
gnu: ruby-asciidoctor-pdf: Update to 1.6.1. 
* gnu/packages/ruby.scm (ruby-asciidoctor-pdf): Update to 1.6.1.
[arguments]: Remove trailing #t's.
 2021-12-12 23:26:01 +01:00
Marius Bakke 539031ed86
gnu: ruby-rouge: Update to 3.26.1. 
* gnu/packages/ruby.scm (ruby-rouge): Update to 3.26.1.
 2021-12-12 23:26:01 +01:00
Marius Bakke 923c78619c
gnu: ruby-loofah: Update to 2.13.0. 
* gnu/packages/ruby.scm (ruby-loofah): Update to 2.13.0.
[source]: Switch to GIT-FETCH.
[arguments]: Remove.
[native-inputs]: Add RUBY-HOE-MARKDOWN.
 2021-12-12 23:26:01 +01:00
Marius Bakke 78bf278a80
gnu: Add ruby-hoe-markdown. 
* gnu/packages/ruby.scm (ruby-hoe-markdown): New variable.
 2021-12-12 23:26:01 +01:00
Marius Bakke a3b25dbfa6
gnu: ruby-nokogiri: Update to 1.12.5. 
* gnu/packages/ruby.scm (ruby-nokogiri-1.10): New variable.
(ruby-nokogiri): Inherit from it.  Update to 1.12.5.
(ruby-nokogiri-diff)[propagated-inputs]: Change from RUBY-NOKOGIRI to
RUBY-NOKOGIRI-1.10.
 2021-12-12 23:26:01 +01:00
Ludovic Courtès 1759292c8b
gnu: guile-netlink: Allow cross-compilation. 
* gnu/packages/guile-xyz.scm (guile-netlink)[arguments]: Remove,
since #:tests? #f is unnecessary.
[native-inputs]: Add GUILE-3.0.
 2021-12-12 23:20:49 +01:00
Ludovic Courtès 867dcbe3a1
gnu: python-pyflakes@2.2: Adjust tests for Python 3.9. 
* gnu/packages/patches/python-pyflakes-test-location.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-pyflakes-2.2): Use it.
 2021-12-12 22:16:33 +01:00
Ludovic Courtès 9155566392
gnu: sundials: Add 'release-monitoring-url' property. 
* gnu/packages/maths.scm (sundials)[properties]: New field.
 2021-12-12 22:16:32 +01:00
Ludovic Courtès 951a4db989
gnu: sundials: Build with '-fcommon'. 
* gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS".
 2021-12-12 22:16:32 +01:00
Artyom V. Poptsov 9b24cd3b8e
gnu: guile-dsv: Update to 0.5.0 
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.5.0.
 2021-12-12 19:49:55 +01:00
Z572 7317c6e739
gnu: Change source file-name suffix in rust packages. 
* gnu/packages/rust-apps.scm (rust-cbindgen)[source]: Change source
file-name suffix from '.crate' to '.tar.gz'.
* gnu/packages/crates-graphics.scm (rust-ansi-term-0.12): Likewise.
(rust-ansi-term-0.11): Likewise.
(rust-rgb-0.8): Likewise.
* gnu/packages/crates-io.scm (rust-adler32-1): Likewise.
(rust-antidote-1): Likewise.
(rust-atty-0.2): Likewise.
(rust-autocfg-0.1): Likewise.
(rust-backtrace-sys-0.1): Likewise.
(rust-base-x-0.2): Likewise.
(rust-bencher-0.1): Likewise.
(rust-bitflags-1): Likewise.
(rust-blas-sys-0.7): Likewise.
(rust-cargon-0.0): Likewise.
(rust-cblas-sys-0.1): Likewise.
(rust-cc-1): Likewise.
(rust-cfg-if-0.1): Likewise.
(rust-clang-sys-0.26): Likewise.
(rust-clap-2): Likewise.
(rust-clicolors-control-1): Likewise.
(rust-cloudabi-0.1): Likewise.
(rust-cloudabi-0.0): Likewise.
(rust-cmake-0.1): Likewise.
(rust-compiler-builtins-0.1): Likewise.
(rust-constant-time-eq-0.1): Likewise.
(rust-core-foundation-sys-0.6): Likewise.
(rust-data-encoding-2): Likewise.
(rust-defmac-0.2): Likewise.
(rust-defmac-0.1): Likewise.
(rust-dirs-1): Likewise.
(rust-discard-1): Likewise.
(rust-doc-comment-0.3): Likewise.
(rust-dtoa-0.4): Likewise.
(rust-dtoa-0.2): Likewise.
(rust-fallible-iterator-0.2): Likewise.
(rust-filetime-0.2): Likewise.
(rust-findshlibs-0.5): Likewise.
(rust-fixedbitset-0.2): Likewise.
(rust-fixedbitset-0.1): Likewise.
(rust-fnv-1): Likewise.
(rust-foreign-types-shared-0.2): Likewise.
(rust-fs-extra-1): Likewise.
(rust-fuchsia-cprng-0.1): Likewise.
(rust-fuchsia-zircon-0.3): Likewise.
(rust-fuchsia-zircon-sys-0.3): Likewise.
(rust-futures-0.1): Likewise.
(rust-futures-core-preview-0.3): Likewise.
(rust-futures-cpupool-0.1): Likewise.
(rust-futures-io-preview-0.3): Likewise.
(rust-futures-sink-preview-0.3): Likewise.
(rust-getopts-0.2): Likewise.
(rust-glob-0.3): Likewise.
(rust-glob-0.2): Likewise.
(rust-heapsize-0.4): Likewise.
(rust-heapsize-0.3): Likewise.
(rust-heapsize-plugin-0.1): Likewise.
(rust-heck-0.3): Likewise.
(rust-hex-0.3): Likewise.
(rust-hex-0.2): Likewise.
(rust-hostname-0.1): Likewise.
(rust-iovec-0.1): Likewise.
(rust-itoa-0.4): Likewise.
(rust-itoa-0.1): Likewise.
(rust-json-0.11): Likewise.
(rust-kernel32-sys-0.2): Likewise.
(rust-language-tags-0.2): Likewise.
(rust-lazy-static-1): Likewise.
(rust-libloading-0.5): Likewise.
(rust-lock-api-0.1): Likewise.
(rust-log-0.4): Likewise.
(rust-maplit-1): Likewise.
(rust-matches-0.1): Likewise.
(rust-matrixmultiply-0.2): Likewise.
(rust-matrixmultiply-0.1): Likewise.
(rust-md5-0.7): Likewise.
(rust-md5-0.6): Likewise.
(rust-memmap-0.7): Likewise.
(rust-memmap-0.6): Likewise.
(rust-mime-0.3): Likewise.
(rust-miniz-oxide-0.3): Likewise.
(rust-miniz-sys-0.1): Likewise.
(rust-miow-0.3): Likewise.
(rust-miow-0.2): Likewise.
(rust-modifier-0.1): Likewise.
(rust-net2-0.2): Likewise.
(rust-nodrop-0.1): Likewise.
(rust-nodrop-union-0.1): Likewise.
(rust-num-traits-0.1): Likewise.
(rust-numtoa-0.1): Likewise.
(rust-openssl-probe-0.1): Likewise.
(rust-owning-ref-0.4): Likewise.
(rust-parity-wasm-0.40): Likewise.
(rust-peeking-take-while-0.1): Likewise.
(rust-percent-encoding-2): Likewise.
(rust-percent-encoding-1): Likewise.
(rust-permutohedron-0.2): Likewise.
(rust-pico-sys-0.0): Likewise.
(rust-pkg-config-0.3): Likewise.
(rust-plain-0.2): Likewise.
(rust-plugin-0.2): Likewise.
(rust-pocket-resources-0.3): Likewise.
(rust-ppv-lite86-0.2): Likewise.
(rust-proc-macro2-1): Likewise.
(rust-quick-error-2): Likewise.
(rust-quick-error-1): Likewise.
(rust-quote-1): Likewise.
(rust-rand-0.7): Likewise.
(rust-rand-0.6): Likewise.
(rust-rand-0.3): Likewise.
(rust-rand-chacha-0.1): Likewise.
(rust-rand-core-0.4): Likewise.
(rust-rand-core-0.3): Likewise.
(rust-rand-hc-0.2): Likewise.
(rust-rand-hc-0.1): Likewise.
(rust-rand-isaac-0.1): Likewise.
(rust-rand-jitter-0.1): Likewise.
(rust-rand-os-0.1): Likewise.
(rust-rand-pcg-0.3): Likewise.
(rust-rand-pcg-0.2): Likewise.
(rust-rand-pcg-0.1): Likewise.
(rust-rand-xorshift-0.1): Likewise.
(rust-rawpointer-0.2): Likewise.
(rust-rawpointer-0.1): Likewise.
(rust-rdrand-0.4): Likewise.
(rust-redox-syscall-0.1): Likewise.
(rust-redox-termios-0.1): Likewise.
(rust-resolv-conf-0.6): Likewise.
(rust-rustc-demangle-0.1): Likewise.
(rust-rustc-serialize-0.3): Likewise.
(rust-rustc-std-workspace-core-1): Likewise.
(rust-ryu-1): Likewise.
(rust-safemem-0.3): Likewise.
(rust-same-file-1): Likewise.
(rust-schannel-0.1): Likewise.
(rust-scoped-threadpool-0.1): Likewise.
(rust-scoped-tls-1): Likewise.
(rust-scoped-tls-0.1): Likewise.
(rust-scopeguard-1): Likewise.
(rust-scopeguard-0.3): Likewise.
(rust-security-framework-sys-0.3): Likewise.
(rust-semver-parser-0.9): Likewise.
(rust-semver-parser-0.7): Likewise.
(rust-serde-derive-1): Likewise.
(rust-shlex-1): Likewise.
(rust-shlex-0.1): Likewise.
(rust-slab-0.4): Likewise.
(rust-socket2-0.3): Likewise.
(rust-sourcefile-0.1): Likewise.
(rust-spin-0.5): Likewise.
(rust-stacker-0.1): Likewise.
(rust-static-assertions-1): Likewise.
(rust-static-assertions-0.3): Likewise.
(rust-stdweb-internal-runtime-0.1): Likewise.
(rust-stdweb-internal-test-macro-0.1): Likewise.
(rust-streaming-stats-0.2): Likewise.
(rust-strsim-0.9): Likewise.
(rust-strsim-0.8): Likewise.
(rust-synstructure-test-traits-0.1): Likewise.
(rust-tar-0.4): Likewise.
(rust-tempdir-0.3): Likewise.
(rust-tempfile-3): Likewise.
(rust-term-0.4): Likewise.
(rust-term-0.2): Likewise.
(rust-termcolor-1): Likewise.
(rust-termion-1): Likewise.
(rust-termios-0.3): Likewise.
(rust-thread-id-3): Likewise.
(rust-thread-local-1): Likewise.
(rust-thread-local-0.3): Likewise.
(rust-threadpool-1): Likewise.
(rust-time-0.1): Likewise.
(rust-tokio-mock-task-0.1): Likewise.
(rust-toml-0.5): Likewise.
(rust-tracing-core-0.1): Likewise.
(rust-traitobject-0.1): Likewise.
(rust-try-from-0.3): Likewise.
(rust-try-lock-0.2): Likewise.
(rust-typeable-0.1): Likewise.
(rust-typemap-0.3): Likewise.
(rust-typenum-1): Likewise.
(rust-ucd-trie-0.1): Likewise.
(rust-ucd-util-0.1): Likewise.
(rust-unicode-xid-0.2): Likewise.
(rust-unicode-xid-0.1): Likewise.
(rust-unreachable-1): Likewise.
(rust-unsafe-any-0.4): Likewise.
(rust-untrusted-0.7): Likewise.
(rust-vcpkg-0.2): Likewise.
(rust-vec-map-0.8): Likewise.
(rust-version-check-0.9): Likewise.
(rust-version-check-0.1): Likewise.
(rust-void-1): Likewise.
(rust-wasi-0.5): Likewise.
(rust-wasm-bindgen-shared-0.2): Likewise.
(rust-wasm-bindgen-test-macro-0.2): Likewise.
(rust-widestring-0.4): Likewise.
(rust-winapi-0.3): Likewise.
(rust-winapi-0.2): Likewise.
(rust-winapi-build-0.1): Likewise.
(rust-winapi-util-0.1): Likewise.
(rust-wincolor-1): Likewise.
(rust-winutil-0.1): Likewise.
(rust-ws2-32-sys-0.2): Likewise.
(rust-xattr-0.2): Likewise.
(rust-xdg-2): Likewise.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-12 15:19:00 +02:00
Efraim Flashner c89940a43a
gnu: Use librsvg-bootstrap. 
* gnu/packages/emacs.scm (emacs)[inputs]: Use librsvg-bootstrap.
* gnu/pacakges/gtk.scm (gtk+-2, gtk+)[propagated-inputs]: Same.
 2021-12-12 15:19:00 +02:00
Efraim Flashner 801f1a7c29
gnu: Add librsvg-bootstrap. 
* gnu/packages/gnome.scm (librsvg-bootstrap): New variable.
 2021-12-12 15:18:57 +02:00
Efraim Flashner 8226771a33
gnu: go-1.14: Fix building on some platforms. 
* gnu/packages/golang.scm (go-1.14)[arguments]: In custom 'prebuild
phase also search for loader without 'linux' in the string. In custom
'build phase set the GOCACHE directory.
[native-inputs]: On systems which don't have support in go-1.4 use
gccgo-10 instead.
 2021-12-12 14:25:45 +02:00
Ricardo Wurmus 492dac2fb0
gnu: python-patsy: Update to 0.5.2. 
* gnu/packages/statistics.scm (python-patsy): Update to 0.5.2.
[arguments]: Run tests conditionally; run tests with pytest.
[native-inputs]: Replace python-nose with python-pytest.
 2021-12-12 12:41:54 +01:00