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105438 Commits (53bf9fba0c9542a46702bb30251f5796da371e64)

Author SHA1 Message Date
jgart 9dacecb111
gnu: Update waybar to 0.9.18.
* gnu/packages/wm.scm (waybar): Update to 0.9.18.
2023-06-01 22:59:38 -05:00
jgart ab4347a1ad
gnu: python-fire: Update to 0.5.0.
* gnu/packages/python-xyz.scm (python-fire): Update to 0.5.0.
[inputs]: Remove python-six and python-termcolor.
[propagated-inputs]: Add python-six and python-termcolor.
2023-06-01 22:59:38 -05:00
Ricardo Wurmus b4382b294e
gnu: Add python-colored.
* gnu/packages/python-xyz.scm (python-colored): New variable.
2023-06-01 20:48:17 +02:00
Ricardo Wurmus eb2918aa96
gnu: Add python-plotext.
* gnu/packages/python-xyz.scm (python-plotext): New variable.
2023-06-01 20:48:17 +02:00
Ricardo Wurmus d411b7d5e7
gnu: Add python-pyani.
* gnu/packages/bioinformatics.scm (python-pyani): New variable.
2023-06-01 20:48:17 +02:00
Ricardo Wurmus 525ef60ff4
gnu: Add python-illumina-utils.
* gnu/packages/bioinformatics.scm (python-illumina-utils): New variable.
2023-06-01 20:48:17 +02:00
Efraim Flashner cf388642ce
gnu: libtommath: Honor the #:tests? flag.
* gnu/packages/multiprecision.scm (libtommath)[arguments]: Adjust custom
'check phase to honor the #:tests? flag.
2023-06-01 15:52:37 +03:00
Efraim Flashner b428b49d8f
gnu: libtommath: Prevent possible integer overflow.
* gnu/packages/multiprecision.scm (libtommath)[source]: Add patch.
* gnu/packages/patches/libtommath-integer-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2023-06-01 15:52:37 +03:00
Efraim Flashner 7c52ae295b
gnu: bear: Update to 3.1.2.
* gnu/packages/build-tools.scm (bear): Update to 3.1.2.
2023-06-01 15:24:23 +03:00
Ricardo Wurmus ced6e0fe94
gnu: Add python-ete3.
* gnu/packages/bioinformatics.scm (python-ete3): New variable.
2023-06-01 14:10:04 +02:00
Andy Tai e6705f994f
gnu: parallel: Update to 20230522.
* gnu/packages/parallel.scm (parallel): Update to 20230522.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:55:09 +03:00
Greg Hogan 9511488941
gnu: zenity: Update to 3.44.1.
* gnu/packages/gnome.scm (zenity): Update to 3.44.1.
[native-inputs]: Add gtk+:bin.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:44:58 +03:00
Greg Hogan 21388dce63
gnu: iperf: Update to 3.13.
* gnu/packages/networking.scm (iperf): Update to 3.13.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:42:43 +03:00
Greg Hogan 3ab95b2753
gnu: iotop: Update to 1.23.
* gnu/packages/linux.scm (iotop): Update to 1.23.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:41:37 +03:00
Greg Hogan fd76ffb974
gnu: html-xml-utils: Update to 8.6.
* gnu/packages/xml.scm (html-xml-utils): Update to 8.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:39:58 +03:00
Greg Hogan e6fb7f6467
gnu: hstr: Update to 3.1.
* gnu/packages/shellutils.scm (hstr): Update to 3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:38:13 +03:00
Greg Hogan dc61b7fcf7
gnu: glances: Update to 3.4.0.3.
* gnu/packages/python-xyz.scm (glances): Update to 3.4.0.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:36:35 +03:00
Greg Hogan f7d5722d36
gnu: fish: Update to 3.6.1.
* gnu/packages/shells.scm (fish): Update to 3.6.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:18:31 +03:00
Greg Hogan 247ac4b73f
gnu: fio: Update to 3.35.
* gnu/packages/benchmark.scm (fio): Update to 3.35.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:15:01 +03:00
Greg Hogan dc6afa69eb
gnu: atop: Update to 2.9.0.
* gnu/packages/admin.scm (atop): Update to 2.9.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-01 12:13:08 +03:00
Efraim Flashner 4abf0af4b1
gnu: openblas: Update make-flags comments and coding style.
* gnu/packages/maths.scm (openblas)[arguments]: In the make-flags use
the target-* macros. Adjust the wording describing why the different
architectures have the flags they do.
2023-06-01 11:14:03 +03:00
Efraim Flashner 076688fa1e
gnu: openblas: Update architectures we provide substitutes for.
* gnu/packages/maths.scm (openblas)[arguments]: Adjust the substitutable?
flag to only not provide substitutes when building for powerpc-linux.
Adjust the comment accordingly.
2023-06-01 11:14:03 +03:00
Efraim Flashner 872e1434f1
gnu: openblas-ilp64: Add powerpc64le-linux as a supported system.
* gnu/packages/maths.scm (openblas-ilp64)[supported-systems]: Add
powerpc64le-linux.
2023-06-01 11:14:03 +03:00
Ricardo Wurmus 93804e978f
gnu: r-mbecs: Fix indentation.
* gnu/packages/bioconductor.scm (r-mbecs)[arguments]: Adjust indentation and
spelling of comment.
2023-06-01 09:21:57 +02:00
Ricardo Wurmus d019053aca
gnu: Add squashfuse.
* gnu/packages/file-systems.scm (squashfuse): New variable.
2023-06-01 09:15:26 +02:00
Mădălin Ionel Patrașcu 10d3f8aa7b
gnu: Add r-mbecs.
* gnu/packages/bioconductor.scm (r-mbecs): New variable.
2023-06-01 09:15:26 +02:00
Leo Famulari 13e2138c23
gnu: Remove linux-libre 6.2.
This kernel series is no longer supported upstream.

* gnu/packages/linux.scm (linux-libre-6.2-version, linux-libre-6.2-gnu-revision,
deblob-scripts-6.2, linux-libre-6.2-pristine-source, linux-libre-6.2-source,
linux-libre-headers-6.2, linux-libre-6.2): Remove variables.
* gnu/packages/aux-files/linux-libre/6.2-arm.conf,
gnu/packages/aux-files/linux-libre/6.2-arm64.conf,
gnu/packages/aux-files/linux-libre/6.2-i686.conf,
gnu/packages/aux-files/linux-libre/6.2-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
2023-05-31 21:21:25 -04:00
Leo Famulari 35bdf804cb
gnu: linux-libre 4.14: Update to 4.14.316.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.316.
(linux-libre-4.14-pristine-source): Update hash.
2023-05-31 21:21:25 -04:00
Leo Famulari c428ed520d
gnu: linux-libre 4.19: Update to 4.19.284.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.284.
(linux-libre-4.19-pristine-source): Update hash.
2023-05-31 21:21:24 -04:00
Leo Famulari 1bd5d06736
gnu: linux-libre 5.4: Update to 5.4.244.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.244.
(linux-libre-5.4-pristine-source): Update hash.
2023-05-31 21:21:24 -04:00
Leo Famulari a939d7cfee
gnu: linux-libre 5.10: Update to 5.10.181.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.181.
(linux-libre-5.10-pristine-source): Update hash.
2023-05-31 21:21:24 -04:00
Leo Famulari 9ab028e70e
gnu: linux-libre 5.15: Update to 5.15.114.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.114.
(linux-libre-5.15-pristine-source): Update hash.
2023-05-31 21:21:23 -04:00
Leo Famulari 876486476a
gnu: linux-libre 6.1: Update to 6.1.31.
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.31.
(linux-libre-6.1-pristine-source): Update hash.
2023-05-31 21:21:23 -04:00
Leo Famulari 7576eff1bf
gnu: linux-libre: Update to 6.3.5.
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.5.
(linux-libre-6.3-pristine-source): Update hash.
2023-05-31 21:21:12 -04:00
Ludovic Courtès 9f7cd1fcaf
gnu: Add updater input properties for R and Python packages.
* gnu/packages/cran.scm (r-glue, r-xfun, r-vctrs)
(r-lifecycle): Turn comment about r-knitr into 'properties' field.
* gnu/packages/mpi.scm (python-mpi4py)[properties]: New field.
2023-05-31 23:26:12 +02:00
Ricardo Wurmus 6ea2e1105a
gnu: r-desctools: Update to 0.99.49.
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.49.
[propagated-inputs]: Add r-withr.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus df71989159
gnu: r-rrcov: Update to 1.7-3.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-3.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus e2bc0cb1b4
gnu: r-rcpparmadillo: Update to 0.12.4.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.0.0.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus ecae6c08fb
gnu: r-knitr: Update to 1.43.
* gnu/packages/statistics.scm (r-knitr): Update to 1.43.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus ef8d938f7b
gnu: r-markdown: Update to 1.7.
* gnu/packages/statistics.scm (r-markdown): Update to 1.7.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 232b2530b8
gnu: r-matrix: Update to 1.5-4.1.
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-4.1.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 1c2d80a2f9
gnu: r-cartogram: Update to 0.3.0.
* gnu/packages/cran.scm (r-cartogram): Update to 0.3.0.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 112afc5979
gnu: r-zoib: Update to 1.6.
* gnu/packages/cran.scm (r-zoib): Update to 1.6.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus a713d1b90e
gnu: r-crul: Update to 1.4.0.
* gnu/packages/cran.scm (r-crul): Update to 1.4.0.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 4560bd6f51
gnu: r-dismo: Update to 1.3-14.
* gnu/packages/cran.scm (r-dismo): Update to 1.3-14.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 131db17bd5
gnu: r-rgeos: Update to 0.6-3.
* gnu/packages/cran.scm (r-rgeos): Update to 0.6-3.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 0268d10d13
gnu: r-tzdb: Update to 0.4.0.
* gnu/packages/cran.scm (r-tzdb): Update to 0.4.0.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 44f3470a7d
gnu: r-lwgeom: Update to 0.2-13.
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-13.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 5be4640724
gnu: r-mlr3pipelines: Update to 0.5.0-1.
* gnu/packages/cran.scm (r-mlr3pipelines): Update to 0.5.0-1.
[native-inputs]: Add r-knitr.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 12adca4654
gnu: r-mlr3misc: Update to 0.12.0.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.12.0.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 75076e408f
gnu: r-scattermore: Update to 1.1.
* gnu/packages/cran.scm (r-scattermore): Update to 1.1.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus d186488fdd
gnu: r-igraph: Update to 1.4.3.
* gnu/packages/cran.scm (r-igraph): Update to 1.4.3.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 49e7043b39
gnu: r-confintr: Update to 1.0.1.
* gnu/packages/cran.scm (r-confintr): Update to 1.0.1.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 73699a2eb5
gnu: r-spatstat: Update to 3.0-6.
* gnu/packages/cran.scm (r-spatstat): Update to 3.0-6.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 33f60fa7b4
gnu: r-spatstat-random: Update to 3.1-5.
* gnu/packages/cran.scm (r-spatstat-random): Update to 3.1-5.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 5ed4c99e4c
gnu: r-spatstat-linnet: Update to 3.1-1.
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-1.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 7b741bb54a
gnu: r-spatstat-geom: Update to 3.2-1.
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-1.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 3bf5efb933
gnu: r-spatstat-utils: Update to 3.0-3.
* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.0-3.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 6ffbd31b89
gnu: r-spatstat-model: Update to 3.2-4.
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-4.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus c3c5aeb666
gnu: r-spatstat-explore: Update to 3.2-1.
* gnu/packages/cran.scm (r-spatstat-explore): Update to 3.2-1.
2023-05-31 18:19:55 +02:00
Ricardo Wurmus 11f8669e4d
gnu: r-scatterpie: Update to 0.2.0.
* gnu/packages/cran.scm (r-scatterpie): Update to 0.2.0.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 278ab76489
gnu: r-qgraph: Update to 1.9.5.
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.5.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus a29c730c0e
gnu: r-stanheaders: Update to 2.26.25.
* gnu/packages/cran.scm (r-stanheaders): Update to 2.26.25.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 51f686edd8
gnu: r-quanteda: Update to 3.3.1.
* gnu/packages/cran.scm (r-quanteda): Update to 3.3.1.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus e9dc2ed219
gnu: r-influencer: Update to 0.1.5.
* gnu/packages/cran.scm (r-influencer): Update to 0.1.5.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 29104c1aa0
gnu: r-biclust: Update to 2.0.3.1.
* gnu/packages/cran.scm (r-biclust): Update to 2.0.3.1.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 801c3d999b
gnu: r-imager: Update to 0.45.2.
* gnu/packages/cran.scm (r-imager): Update to 0.45.2.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus b5c7614037
gnu: r-fda: Update to 6.1.4.
* gnu/packages/cran.scm (r-fda): Update to 6.1.4.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 8c01b74e91
gnu: r-treemap: Update to 2.4-4.
* gnu/packages/cran.scm (r-treemap): Update to 2.4-4.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 2de5eb5434
gnu: r-tuner: Update to 1.4.4.
* gnu/packages/cran.scm (r-tuner): Update to 1.4.4.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 75f551bff1
gnu: r-acet: Update to 1.9.0.
* gnu/packages/cran.scm (r-acet): Update to 1.9.0.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 3602cb2cc9
gnu: r-parameters: Update to 0.21.1.
* gnu/packages/cran.scm (r-parameters): Update to 0.21.1.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 0b9facbccf
gnu: r-styler: Update to 1.10.0.
* gnu/packages/cran.scm (r-styler): Update to 1.10.0.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 58c72740b0
gnu: r-ggnewscale: Update to 0.4.9.
* gnu/packages/cran.scm (r-ggnewscale): Update to 0.4.9.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus b44e9884c8
gnu: r-bookdown: Update to 0.34.
* gnu/packages/cran.scm (r-bookdown): Update to 0.34.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus c24273d430
gnu: r-sf: Update to 1.0-13.
* gnu/packages/cran.scm (r-sf): Update to 1.0-13.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 25667e3b57
gnu: r-s2: Update to 1.1.4.
* gnu/packages/cran.scm (r-s2): Update to 1.1.4.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 1843f41c9b
gnu: r-deldir: Update to 1.0-9.
* gnu/packages/cran.scm (r-deldir): Update to 1.0-9.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 99d4b5b0db
gnu: r-future-apply: Update to 1.11.0.
* gnu/packages/cran.scm (r-future-apply): Update to 1.11.0.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 670d2bb114
gnu: r-parallelly: Update to 1.36.0.
* gnu/packages/cran.scm (r-parallelly): Update to 1.36.0.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus a85d445e66
gnu: r-rnifti: Update to 1.5.0.
* gnu/packages/cran.scm (r-rnifti): Update to 1.5.0.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus a17674d6c0
gnu: r-admisc: Update to 0.32.
* gnu/packages/cran.scm (r-admisc): Update to 0.32.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 5bda35f468
gnu: r-chk: Update to 0.9.0.
* gnu/packages/cran.scm (r-chk): Update to 0.9.0.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus e3f539b1a7
gnu: r-emmeans: Update to 1.8.6.
* gnu/packages/cran.scm (r-emmeans): Update to 1.8.6.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus b823110e00
gnu: r-targets: Update to 1.1.3.
* gnu/packages/cran.scm (r-targets): Update to 1.1.3.
[propagated-inputs]: Remove r-withr.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 41a5eb6d29
gnu: r-pscl: Update to 1.5.5.1.
* gnu/packages/cran.scm (r-pscl): Update to 1.5.5.1.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus c26210fe7b
gnu: r-proc: Update to 1.18.2.
* gnu/packages/cran.scm (r-proc): Update to 1.18.2.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 47070e8220
gnu: r-nodbi: Update to 0.9.5.
* gnu/packages/cran.scm (r-nodbi): Update to 0.9.5.
[propagated-inputs]: Remove r-jsonify.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus c027322e3f
gnu: r-insight: Update to 0.19.2.
* gnu/packages/cran.scm (r-insight): Update to 0.19.2.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus e468215979
gnu: r-learnr: Update to 0.11.4.
* gnu/packages/cran.scm (r-learnr): Update to 0.11.4.
[propagated-inputs]: Remove r-curl.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 182fe39d07
gnu: r-learnr: Update to 0.17.3.
* gnu/packages/cran.scm (r-learnr): Update to 0.17.3.
[propagated-inputs]: Remove r-checkmate, r-curl, r-digest, r-ellipsis, r-evaluate,
r-htmltools, r-htmlwidgets, r-jsonlite, r-knitr, r-lifecycle,
r-markdown, r-promises, r-rappdirs, r-renv, r-rlang, r-rmarkdown,
r-rprojroot, r-shiny, and r-withr.
2023-05-31 18:19:54 +02:00
Ricardo Wurmus 4402d5afca
gnu: r-catdata: Update to 1.2.3.
* gnu/packages/cran.scm (r-catdata): Update to 1.2.3.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 6778a0249c
gnu: r-statnet-common: Update to 4.9.0.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.9.0.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 06e6bf4f1e
gnu: r-timeseries: Update to 4030.106.
* gnu/packages/cran.scm (r-timeseries): Update to 4030.106.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 5b3b08bb06
gnu: r-ucminf: Update to 1.1-4.3.
* gnu/packages/cran.scm (r-ucminf): Update to 1.1-4.3.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 35c0cdd2d0
gnu: r-ctrdata: Update to 1.13.2.
* gnu/packages/cran.scm (r-ctrdata): Update to 1.13.2.
[propagated-inputs]: Remove r-dplyr and r-rvest; add r-tibble.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 1047c7e715
gnu: r-pls: Update to 2.8-2.
* gnu/packages/cran.scm (r-pls): Update to 2.8-2.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 552ba71f57
gnu: r-httr2: Update to 0.2.3.
* gnu/packages/cran.scm (r-httr2): Update to 0.2.3.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 27d87b528c
gnu: r-httpuv: Update to 1.6.11.
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.11.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus f5951bbc70
gnu: r-sys: Update to 3.4.2.
* gnu/packages/cran.scm (r-sys): Update to 3.4.2.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus c657cb8b65
gnu: r-ecosolver: Update to 0.5.5.
* gnu/packages/cran.scm (r-ecosolver): Update to 0.5.5.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 30d49c8dd7
gnu: r-clock: Update to 0.7.0.
* gnu/packages/cran.scm (r-clock): Update to 0.7.0.
[propagated-inputs]: Add r-cli and r-lifecycle.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 72e06ca299
gnu: r-climaemet: Update to 1.1.1.
* gnu/packages/cran.scm (r-climaemet): Update to 1.1.1.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 1a5f906e44
gnu: r-rticles: Update to 0.25.
* gnu/packages/cran.scm (r-rticles): Update to 0.25.
[propagated-inputs]: Add r-lifecycle.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 40bc99d5ca
gnu: r-waldo: Update to 0.5.1.
* gnu/packages/cran.scm (r-waldo): Update to 0.5.1.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 5950385cad
gnu: r-castor: Update to 1.7.10.
* gnu/packages/cran.scm (r-castor): Update to 1.7.10.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus aae17d3efa
gnu: r-abn: Update to 2.7-5.
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-5.
[native-inputs]: Add r-r-rsp.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 85a70cbde6
gnu: r-ggpicrust2: Update to 1.6.5.
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.5.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 9dcb09076d
gnu: r-valr: Update to 0.6.8.
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.8.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 63c587b80b
gnu: r-dt: Update to 0.28.
* gnu/packages/statistics.scm (r-dt): Update to 0.28.
[source]: Update versions and hashes of datatables extensions.
[arguments]: Minify additional plugin sources.
[native-inputs]: Update plugins sources from 1.12.0 to 1.13.4.
2023-05-31 18:19:53 +02:00
Ricardo Wurmus 82df30dbfd
gnu: Add python-zbarlight.
* gnu/packages/python-xyz.scm (python-zbarlight): New variable.
2023-05-31 18:19:53 +02:00
Nicolas Goaziou dd15d0ffec
gnu: btrfs-progs: Fix build.
* gnu/packages/linux.scm (btrfs-progs)[arguments]<#:configure-flags>: Fix
typo.  Splicing MEMBER return value results in an invalid IF form.  The whole
IF should be spliced instead.

Reported-by: mrvdb on #guix.
2023-05-31 16:09:19 +02:00
Janneke Nieuwenhuizen 12e6a59238
gnu: libunistring: Fix make check for the Hurd.
* gnu/packages/libunistring.scm (libunistring)[arguments]: Set XFAIL_TESTS
with test-perror2, and test-strerror_r when building to the Hurd.
2023-05-31 07:51:28 +02:00
Christopher Baines 77f52db416
gnu: nar-herder: Update to 0-20.b27ca4d.
* gnu/packages/package-management.scm (nar-herder): Update to 0-20.b27ca4d.
2023-05-30 16:39:20 +01:00
Christopher Baines 63e5975cac
gnu: guile-squee: Update to 0-4.fab9d95.
* gnu/packages/guile-xyz.scm (guile-squee): Update to 0-4.fab9d95.
2023-05-30 16:39:20 +01:00
Christopher Baines 0c00cf229f
gnu: guile-fibers-next: Update to 1.3.0-1.99fc3e3.
* gnu/packages/guile-xyz.scm (guile-fibers-next): Update to 1.3.0-1.99fc3e3.
2023-05-30 16:39:17 +01:00
Andre A. Gomes 5a8bb79c1c
gnu: nyxt: Update to 3.1.0.
* gnu/packages/web-browsers.scm (nyxt): Update to 3.1.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-05-30 15:59:24 +02:00
Andre A. Gomes 3e9a814c0c
gnu: webkitgtk: Update to 2.40.2.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.40.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-05-30 13:51:35 +02:00
Michael Ford b58fab5982
gnu: bitcoin-core: Update to 25.0.
* gnu/packages/finance.scm (bitcoin-core): Update to 25.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-05-30 13:42:27 +02:00
Andy Tai 2b1b0a580d
gnu: xpra: Update to 4.4.5.
* gnu/packages/xorg.scm (xpra): Update to 4.4.5.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 18:13:25 +08:00
Hilton Chain 52fed8fbd7
gnu: busybox: Update to 1.36.1.
* gnu/packages/busybox.scm (busybox): Update to 1.36.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 18:04:18 +08:00
Hilton Chain bf1ed215c7
gnu: smartdns: Update to 42.
* gnu/packages/dns.scm (smartdns): Update to 42.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 17:59:15 +08:00
Hilton Chain 031aaf1e50
gnu: hyfetch: Update to 1.4.8.
* gnu/packages/admin.scm (hyfetch): Update to 1.4.8.
[arguments]: Disable tests.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 17:58:29 +08:00
Hilton Chain 21630dba4a
gnu: font-sarasa-gothic: Update to 0.40.7.
* gnu/packages/fonts.scm (font-sarasa-gothic): Update to 0.40.7.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 17:56:35 +08:00
Hilton Chain e59db6d11a
gnu: font-lxgw-wenkai-tc: Update to 1.000.
* gnu/packages/fonts.scm (font-lxgw-wenkai-tc): Update to 1.000.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 17:55:08 +08:00
Hilton Chain 83771a21c8
gnu: font-lxgw-wenkai: Update to 1.300.
* gnu/packages/fonts.scm (font-lxgw-wenkai): Update to 1.300.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 17:54:45 +08:00
Hilton Chain e026e8203b
gnu: font-chiron-hei-hk: Update to 2.506.
* gnu/packages/fonts.scm (font-chiron-hei-hk): Update to 2.506.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 17:52:48 +08:00
Hilton Chain 18d522379e
gnu: font-chiron-sung-hk: Update to 1.008.
* gnu/packages/fonts.scm (font-chiron-sung-hk): Update to 1.008.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-30 17:51:36 +08:00
宋文武 d32fb0ee6b
gnu: warzone2100: Rewrite package arguments to G-expressions.
* gnu/packages/games.scm (warzone2100)[arguments]: Convert to list of
G-expressions.
2023-05-30 17:46:43 +08:00
宋文武 368f0fa0f2
gnu: warzone2100: Update to 4.3.5.
* gnu/packages/games.scm (warzone2100): Update to 4.3.5.
2023-05-30 17:45:44 +08:00
gemmaro 3807876af4
gnu: Add skktools.
* gnu/packages/language.scm (skktools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-30 00:15:30 +02:00
Tanguy Le Carrour 110462bb2f
home: services: Add msmtp service.
* gnu/home/services/mail.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Mail Home Services): New node.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-05-30 00:15:30 +02:00
Ludovic Courtès b8f89ab2c9
gnu: shepherd: Update to 0.10.1.
Fixes <https://issues.guix.gnu.org/63717>.

* gnu/packages/admin.scm (shepherd-0.10): Update to 0.10.1.
2023-05-30 00:15:29 +02:00
Ludovic Courtès d23d8fcee9
services: herd: "Resolve" transient services only when needed.
This allows us to get rid of the "eval root" actions, which in turn
would lead to confusing "Evaluating user expression" messages.

Fixes <https://issues.guix.gnu.org/55857>.

* gnu/services/herd.scm (resolve-transients): In 'values', avoid
'eval-there' call when UNRESOLVED is empty.
2023-05-30 00:15:29 +02:00
Leo Famulari e91ceece76
gnu: linux-libre 5.15: Update to 5.15.113.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.113.
(linux-libre-5.15-pristine-source): Update hash.
2023-05-29 13:53:46 -04:00
Leo Famulari 4213909937
gnu: linux-libre 6.1: Update to 6.1.30.
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.30.
(linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes.
2023-05-29 13:53:46 -04:00
Leo Famulari a17ae16f48
gnu: linux-libre: Update to 6.3.4.
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.4.
(linux-libre-6.3-pristine-source, deblob-scripts-6.3): Update hashes.
2023-05-29 13:53:43 -04:00
Janneke Nieuwenhuizen 524bd780a0
gnu: commencement: m4-boot0: Disable tests for the Hurd too.
GNU lib's stack-overflow tests fail.

* gnu/packages/commencement.scm (m4-boot0)[arguments]: Set #:tests? to #false
for the Hurd.
2023-05-29 19:40:44 +02:00
Dhruvin Gandhi cf78f5b549
gnu: Add node-global-gradle-clean.
* gnu/packages/node-xyz.scm (node-global-gradle-clean): New variable.

Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2023-05-29 16:22:33 +02:00
Efraim Flashner 7b400e7f87
gnu: libmicrohttpd: Update to 0.9.77.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.77.
2023-05-29 11:03:34 +03:00
Felix Lechner 7ff003bcbf
gnu: eudev: Use new package style.
* gnu/packages/linux.scm (eudev)[arguments]: Convert to list of G-Expressions.
[native-inputs]: Drop labels.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-05-29 09:43:41 +02:00
Jonathan Brielmaier 1e3ed56b17
gnu: icedove: Update to 102.11.2.
* gnu/packages/gnuzilla.scm (%icedove-version): Update to 102.11.2.

Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2023-05-29 09:32:30 +02:00
Jonathan Brielmaier 6b71adda7c
gnu: telegram-desktop: Add missing copyright line.
Follow-up for 6192acf8b7.

* gnu/packages/telegram.scm: Add copyright line for Saku.

Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2023-05-29 09:32:30 +02:00
Janneke Nieuwenhuizen 77fe306c66
gnu: avahi: Support for cross-building and the Hurd.
* gnu/packages/avahi.scm (avahi)[inputs]: Include libcap only for supported
systems and when not cross-building.
[arguments]: Add --disable-autoipd when not using libcap.
2023-05-29 09:25:51 +02:00
Liliana Marie Prikler d64d6ea2cf
gnu: python-renpy: Use G-Expressions.
* gnu/packages/game-development.scm (python-renpy)[arguments]: Convert to
list of G-Expressions.
2023-05-28 23:14:20 +02:00
Liliana Marie Prikler eb3a7b6646
gnu: python-renpy: Update to 8.1.0.
* gnu/packages/game-development.scm (python-renpy): Update to 8.1.0.
[source]: No longer unbundle fribidi.
Drop sync service and report as official version.
[arguments]<#:phases>: Drop ‘fix-include-paths’.
[propagated-inputs]: Add python-ecdsa.
2023-05-28 23:14:20 +02:00
Liliana Marie Prikler 1b3c9ef96e
gnu: python-pygame-sdl2: Use G-Expressions.
* gnu/packages/game-development.scm (python-pygame-sdl2)[arguments]: Convert
to list of G-Expressions.
2023-05-28 23:14:19 +02:00
Liliana Marie Prikler 12fcdbd409
gnu: python-pygame-sdl2: Update to 2.1.0-for-renpy-8.1.0.
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
2.1.0-for-renpy-8.1.0.
2023-05-28 23:14:19 +02:00
Liliana Marie Prikler 4f01ef2acb
gnu: python-mpi4py: Update home-page.
* gnu/packages/mpi.scm (python-mpi4py)[home-page]: Use “github.com” instead
of “bitbucket.com”.
2023-05-28 23:14:19 +02:00
Liliana Marie Prikler 437cea6da8
gnu: paraview: Update to 5.11.1.
* gnu/packages/image-processing.scm (paraview): Update to 5.11.1.
[source]: Unbundle nlohmannjson.
[arguments]<#:configure-flags>: Add
“-DVTK_MODULE_USE_EXTERNAL_VTK_nlohmannjson=ON”.
[inputs]: Add nlohmann-json.
2023-05-28 23:14:19 +02:00
Liliana Marie Prikler eb5d0f926d
gnu: Remove paraview-5.9.
* gnu/packages/image-processing.scm (paraview-5.9): Delete variable.
2023-05-28 23:14:19 +02:00
Liliana Marie Prikler f74d0645cc
gnu: cli11: Use G-Expressions.
* gnu/packages/cpp.scm (cli11)[arguments]: Convert to list of G-Expressions.
2023-05-28 23:14:18 +02:00
Liliana Marie Prikler 3be2000d5f
gnu: cli11: Update to 2.3.2.
* gnu/packages/cpp.scm (cli11): Update to 2.3.2.
[source]: Remove snippet.
[arguments]: Drop #:imported-modules, #:modules, and #:phases.
[native-inputs]: Add “catch2”.
2023-05-28 23:14:18 +02:00
Liliana Marie Prikler 8391bceceb
gnu: emacs-next-tree-sitter: "Downgrade" to 29.0.91.
* gnu/packages/emacs.scm (emacs-next-tree-sitter)[version, source]: Inherit
fields from emacs-next.
2023-05-28 23:14:18 +02:00
Liliana Marie Prikler c3133fe96f
gnu: emacs-next: Update to 29.0.91.
* gnu/packages/emacs.scm (emacs-next): Update to 29.0.91.
2023-05-28 23:14:16 +02:00
Efraim Flashner 9845e408e5
gnu: guix: Remove trailing #t from phases.
* gnu/packages/package-management.scm (guix)[arguments]: Remove trailing
  #t from phases.
2023-05-28 14:46:09 +03:00
Efraim Flashner ef5a05bac8
gnu: guix: Fix cross-building.
* gnu/packages/package-management.scm (guix)[arguments]: In custom
'set-font-path phase also search native-inputs for the input directory.
2023-05-28 14:43:15 +03:00
Saku Laesvuori 6192acf8b7
gnu: telegram-desktop: Update to 4.8.1
* gnu/packages/patches/webrtc-for-telegram-desktop-fix-gcc12-cstdint.patch:
  Delete file.
* gnu/local.mk (dist_patch_DATA): Remove deleted patch.
* gnu/packages/telegram.scm (libyuv-for-telegram-desktop,
cmake-helpers-for-telegram-desktop, codegen-for-telegram-desktop,
lib-base-for-telegram-desktop, lib-crl-for-telegram-desktop,
lib-lottie-for-telegram-desktop, lib-rpl-for-telegram-desktop,
lib-spellcheck-for-telegram-desktop, lib-ui-for-telegram-desktop,
lib-webrtc-for-telegram-desktop, lib-webview-for-telegram-desktop,
tgcalls-for-telegram-desktop): Bump to submodule checkout.
(webrtc-for-telegram-desktop): Bump to submodule checkout.
[patches]: Remove patch.
[snippet]: Unbundle abseil-cpp and crc32c
[inputs]: Add crc32c and glibmm-next. Replace glib with glib-next.
(cld3-for-telegram-desktop): New variable.
(telegram-desktop): Update to 4.8.1
[snippet]: Add cld3 as a submodule.
[arguments]<phases>: Add cld3 as a submodule.
[native-inputs]: Replace glib with glib-next
[inputs]: Add crc32c, kimageformats, plasma-wayland-protocols, protobuf,
  qtdeclarative-5 and wayland-protocols. Replace glib with glib-next and
  glibmm-2.64 with glibmm-next.
* gnu/packages/patches/telegram-desktop-allow-disable-libtgvoip.patch:
  Update patch.

Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2023-05-28 13:19:18 +02:00
Saku Laesvuori 10ac7c9ab5
gnu: Add glibmm-next.
* gnu/packages/glib.scm (glibmm-next): New variable.

Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2023-05-28 13:12:50 +02:00
Saku Laesvuori c10c24e956
gnu: c++-gsl: Update to 4.0.0
* gnu/packages/cpp.scm (c++gsl): Update to 4.0.0.
* gnu/packages/patches/c++-gsl-find-system-gtest.patch: Delete file.
* gnu/packages/patches/c++-gsl-move-array-bounds-tests.patch: Delete
  file.
* gnu/local.mk (dist_patch_DATA): Remove deleted patches.

Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2023-05-28 13:09:40 +02:00
Guillaume Le Vaillant 5c959d0fa7
gnu: cl-utm-ups: Update to 1.2-0.f1e6fd4.
* gnu/packages/lisp-xyz.scm (sbcl-utm-ups): Update to 1.2-0.f1e6fd4.
2023-05-28 12:04:49 +02:00
Greg Hogan b96b82bcd4
gnu: xclock: Update to 1.1.1.
* gnu/packages/xorg.scm (xclock): Update to 1.1.1.
[source](origin): Update file extension.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-26 20:54:19 +08:00
Greg Hogan 152523748e
gnu: ugrep: Update to 3.11.2.
* gnu/packages/search.scm (ugrep): Update to 3.11.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-26 20:52:50 +08:00
Greg Hogan 201df17a60
gnu: jc: Update to 1.23.2.
* gnu/packages/admin.scm (jc): Update to 1.23.2.
[build-system]: Change to PYPROJECT-BUILD-SYSTEM.
[native-inputs]: Add python-pytest.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-26 20:50:39 +08:00
Ricardo Wurmus 60b71b0db4
gnu: Add python-gseapy.
* gnu/packages/bioinformatics.scm (python-gseapy): New variable.
2023-05-26 14:36:14 +02:00
Guillaume Le Vaillant bb6ddc269f
gnu: Remove bitcoin-abc.
This package (version 0.21.12 from July 2020, which currently doesn't build)
is for an outdated version of the Bitcoin Cash protocol. Since November 2020,
the bitcoin-abc program has become an implementation of the eCash protocol,
which is different from Bitcoin Cash (different consensus model).

* gnu/packages/finance.scm (bitcoin-abc): Remove variable.

Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com>
2023-05-26 12:46:05 +02:00
Sharlatan Hellseher 3299b40b35
gnu: python-asdf: Enable tests.
* gnu/packages/astronomy.scm (python-asdf)[arguments]: Remove #:tests, skip
failing tests in #:test-flags.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:06 -03:00
Sharlatan Hellseher b9bf533f15
gnu: python-asdf-coordinates-schemas: Update to 0.2.0.
* gnu/packages/astronomy.scm (python-asdf-coordinates-schemas): Update
to 0.2.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the 'check phase.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:06 -03:00
Sharlatan Hellseher 9595b7619b
gnu: python-asdf: Update to 2.15.0.
* gnu/packages/astronomy.scm (python-asdf): Update to 2.15.0.
[native-inputs]: Add python-fsspec.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher c6d2c61259
gnu: python-ephem: Update to 4.1.4.
* gnu/packages/astronomy.scm (python-ephem): Update to 4.1.4.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher c8c233a127
gnu: python-photutils: Update to 1.7.0.
* gnu/packages/astronomy.scm (python-photutils): Update to 1.7.0.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher 0f4867667f
gnu: python-poppy: Update to 1.1.1.
* gnu/packages/astronomy.scm (python-poppy): Update to 1.1.1.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher 264d08fdc4
gnu: python-astral: Update to 3.2.
* gnu/packages/astronomy.scm (python-astral): Update to 3.2.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the 'check phase, specify #:test-flags and skip
failing tests.  Add 'prepare-test-environment phase.  Use G-Expressions.
[native-inputs]: Add python-poetry-core, python-pytest.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher 740ebec5aa
gnu: python-pynbody: Update to 1.3.1.
* gnu/packages/astronomy.scm (python-pynbody): Update to 1.3.1.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the 'check phase and remove custom
'disable-tests-require-testdata phase, specify #:test-flags.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher d6e587e11d
gnu: python-astroquery: Use G-Expressions.
* gnu/packages/astronomy.scm (python-astroquery)[arguments]: Use
G-Expressions.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher 3c17950aff
gnu: python-astropy-healpix: Switch to pyproject-build-system.
* gnu/packages/astronomy.scm (python-astropy-healpix)[build-system]: Switch to
pyproject-build-system.
[arguments]: Do not override the 'check phase.  Use G-Expressions.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher 2e501ccc03
gnu: python-fitsio: Use G-Expressions.
* gnu/packages/astronomy.scm (python-fitsio): Use G-Expressions.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher ee9dfc1dda
gnu: python-pyvo: Update to 1.4.1.
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.4.1.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the 'check phase.
[native-inputs]: Add python-setuptools-scm.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher e811fa139f
gnu: python-reproject: Update to 0.10.0.
* gnu/packages/astronomy.scm (python-reproject): Update to 0.10.0.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher bf555e8f1b
gnu: python-ccdproc: Enable tests.
* gnu/packages/astronomy.scm (python-ccdproc)[arguments]: Remove #:tests?.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher 1761f53358
gnu: python-sgp4: Update to 2.22.
* gnu/packages/astronomy.scm (python-sgp4): Update to 2.22.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher d64c16937f
gnu: python-spherical-geometry: Add update note.
* gnu/packages/astronomy.scm (python-spherical-geometry): Add note on why the
package can't be updated to the latest version.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:05 -03:00
Sharlatan Hellseher 2dccb0e724
gnu: python-sunpy: Update to 4.1.5.
* gnu/packages/astronomy.scm (python-sunpy): Update to 4.1.5.
[arguments]: In #:test-flags, skip 2 failing tests.  In the
'prepare-test-environment phase, remove redundant substitutions.
[native-inputs]: Add opencv.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:20:00 -03:00
Sharlatan Hellseher 6a7c842cf9
gnu: python-gwcs: Update to 0.18.3.
* gnu/packages/astronomy.scm (python-gwcs): Update to 0.18.3.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:15:13 -03:00
Sharlatan Hellseher fd3c18b0d0
gnu: python-asdf-wcs-schemas: Switch to pyproject-build-system.
* gnu/packages/astronomy.scm (python-asdf-wcs-schemas)[build-system]: Switch
to pyproject-build-system.
[arguments]: Do not override the 'check phase.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:15:13 -03:00
Sharlatan Hellseher 035090a424
gnu: python-asdf-astropy: Update to 0.4.0.
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.4.0.
[source]: Update outdated source URI.
[arguments]: Add 'set-home-env phase before 'check.
[native-inputs]: Remove python-matplotlib.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-25 21:15:09 -03:00
Arnaud Lechevallier 085bf9cd21
gnu: Add emacs-substitute.
* gnu/packages/emacs-xyz.scm (emacs-substitute): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-05-25 22:19:39 +02:00
Nicolas Goaziou 0e570b1726
gnu: emacs-notmuch-maildir: Update to 0.2.2.
* gnu/packages/emacs-xyz.scm (emacs-notmuch-maildir): Update to 0.2.2.
[propagated-inputs]: Add EMACS-COMPAT.
2023-05-25 22:19:38 +02:00
Nicolas Goaziou 7945a35141
gnu: emacs-undohist-el: Update to 0.3.0.
* gnu/packages/emacs-xyz.scm (emacs-undohist-el): Update to 0.3.0.
2023-05-25 22:19:38 +02:00
Giovanni Biscuolo 375137185b
gnu: openboard: Update to 1.7-dev-0.47a96e1.
* gnu/packages/education.scm (openboard)[version]: Update to 1.7-dev-0.47a96e1.
[arguments]: Fix quazip substitution in `fix-library-path'.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-05-25 22:19:38 +02:00
Maciej Kalandyk 45c173b3c8
gnu: Add emacs-prism.
* gnu/packages/emacs-xyz.scm (emacs-prism): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-05-25 22:19:37 +02:00
Nicolas Goaziou 0f8b84b390
gnu: emacs-inspector: Update to 0.31.
* gnu/packages/emacs-xyz.scm (emacs-inspector): Update to 0.31.
[arguments]: Do not load "tree-inspector-tests.el", which was moved to another repository.
[propagated-inputs]: Remove EMACS-TREEVIEW.
2023-05-25 22:19:37 +02:00
Nicolas Goaziou 1c87d1507a
gnu: Add emacs-tree-inspector.
* gnu/packages/emacs-xyz.scm (emacs-tree-inspector): New variable.
2023-05-25 22:19:36 +02:00
Christopher Baines f36b8a9763
gnu: guix-build-coordinator: Fix source hash.
The previous commit has the wrong hash, I think I ended up building the data
service instead for some reason and didn't set the hash of this package
correctly.

* gnu/packages/package-management.scm (guix-build-coordinator)[source]: Fix
hash.
2023-05-25 20:22:11 +01:00
Navid Afkhami 9f37dc3be3
gnu: Add python-tensorly.
* gnu/packages/machine-learning.scm (python-tensorly): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-05-25 17:19:29 +02:00
Maxim Cournoyer 99fc7e5dd3
tests: Fix the Jami service system tests.
This fixes a regression introduced with commit a09c7da ("tests: Fork and exec
a new Guile for the marionette REPL.") and only partially fixed with the
follow-up commit f518882 (" tests: Add missing module imports for
marionette-evaluated code.").

* gnu/tests/telephony.scm (run-jami-test): Remove extraneous module imports.
Move the setting of the DBUS_SESSION_BUS_ADDRESS environment variable inside
the first marionette-eval'd setup test.
["service can be stopped"]: Add missing (gnu build dbus-service) module.
2023-05-25 10:17:32 -04:00
Greg Hogan db883ed5d7
gnu: xeyes: Update to 1.2.0.
* gnu/packages/xdisorg.scm (xeyes): Update to 1.2.0.
[inputs]: Add libxi.

Signed-off-by: jgart <jgart@dismail.de>
2023-05-25 09:09:27 -05:00
Ricardo Wurmus 0c662d570e
gnu: ekho: Update to 8.6.
* gnu/packages/speech.scm (ekho): Update to 8.6.
2023-05-25 15:59:33 +02:00
Ricardo Wurmus de926f43b8
gnu: python-vosk: Update for Python 3.10.
* gnu/packages/machine-learning.scm (python-vosk)[arguments]: Replace 3.9 with
3.10.
2023-05-25 15:37:39 +02:00
Ricardo Wurmus 7f79dabc96
gnu: kaldi-for-vosk: Update to 0-0.a25f216.
* gnu/packages/machine-learning.scm (kaldi-for-vosk): Update to 0-0.a25f216.
[inputs]: Replace jack-1 with jack-2.
[arguments]: Disable cu-array-test.
2023-05-25 15:37:39 +02:00
Ricardo Wurmus a9c91a1cb1
gnu: kaldi-for-vosk: Adjust style.
* gnu/packages/machine-learning.scm (kaldi-for-vosk)[inputs]: Remove spurious
semicolon.
[arguments]: Use LIST instead of double quoting; replace LET* with LET; adjust
indentation.
2023-05-25 15:37:39 +02:00
Ivan Gankevich a9cde26133
gnu: Add mouseloupe.
* gnu/packages/accessibility.scm (mouseloupe): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-25 12:51:16 +02:00
Aleksandr Vityazev 0d320a10bf
gnu: tinyproxy: Update to 1.11.1.
* gnu/packages/web.scm (tinyproxy): Update to 1.11.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-25 12:51:16 +02:00
Dominik Delgado Steuter e7ab908e0a
gnu: Add dialect.
* gnu/packages/gnome.scm (dialect): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-25 12:51:16 +02:00
Dominik Delgado Steuter 1af79a0615
gnu: yt-dlp: Fix substitution for ffmpeg path.
The old expression did not work; ffmpeg was not found
when using the --add-metadata flag.

* gnu/packages/video.scm (yt-dlp)
[arguments]: Adjust substitution in custom 'default-to-the-ffmpeg-input phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-25 12:51:16 +02:00
Ivan Vilata i Balaguer ca5696b1a3
gnu: encfs: Depend on OpenSSL v1.1 to fix test segfault.
[[PGP Signed Part:No public key for 3DECC105F5DD2382 created at 2023-05-19T19:45:47+0200 using RSA]]
Fixes <https://issues.guix.gnu.org/63280>.

* gnu/packages/crypto.scm (encfs): Update to 1.9.
[inputs]: Replace openssl with openssl-1.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-25 12:51:16 +02:00
Christopher Baines 0b0c2ef638
gnu: guix-build-coordinator: Update to 0.0.1-41.6885006.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0.0.1-41.6885006.
2023-05-25 09:55:15 +01:00
Christopher Baines e5184ba434
gnu: valgrind: Mark as not supported for armhf-linux.
From the build log:
  checking for a supported CPU... no (arm)
  configure: error: Unsupported host architecture. Sorry

* gnu/packages/valgrind.scm (valgrind)[supported-systems]: Remove armhf-linux.
2023-05-25 09:45:02 +01:00
Ricardo Wurmus 495d2b3960
gnu: gaupol: Update to 1.12.
* gnu/packages/video.scm (gaupol): Update to 1.12.
2023-05-24 23:58:30 +02:00
Ricardo Wurmus 86f853c4a3
gnu: gaupol: Use pyproject-build-system.
* gnu/packages/video.scm (gauplo)[build-system]: Use pyproject-build-system.
[arguments]: Delete custom 'install phase.
2023-05-24 23:58:30 +02:00
Ricardo Wurmus 0243d5fa1a
gnu: gaupol: Drop input labels.
* gnu/packages/video.scm (gaupol)[native-inputs]: Remove package labels.
2023-05-24 23:58:30 +02:00
Ricardo Wurmus b06b841e57
gnu: gaupol: Delete sanity check phase.
The sanity check fails because there is no graphical display.

* gnu/packages/video.scm (gaupol)[arguments]: Delete 'sanity-check phase.
2023-05-24 23:58:30 +02:00
Vagrant Cascadian a1323e97e1
gnu: librecast: Update to 0.6.1.
* gnu/packages/networking.scm (librecast): Update to 0.6.1.

Reviewed-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-24 14:07:33 -07:00
Efraim Flashner 1be6baed2b
gnu: opensbi: Remove input labels.
* gnu/packages/firmware.scm (make-opensbi-package)[native-inputs]:
Remove input labels.
2023-05-24 19:16:38 +03:00
Efraim Flashner d17ac233ee
gnu: opensbi: Update to 1.2.
* gnu/packages/firmware.scm (make-opensbi-package): Update to 1.2.
[native-inputs]: Add python.
[arguments]: Remove trailing #t from phases.
2023-05-24 19:16:34 +03:00
David Thompson 9fca95b263
gnu: guile-chickadee: Update to 0.10.0.
* gnu/packages/game-development.scm (guile-chickadee): Update to 0.10.0.
2023-05-24 11:53:03 -04:00
Morgan Smith 6d0571215d
gnu: isync: Add patch to improve openssl-3 compatibility.
* gnu/packages/patches/isync-openssl3-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (isync): Use patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:01 +02:00
Artyom V. Poptsov b5a85e31dd
gnu: guile-png: Update to 0.4.1.
* gnu/packages/guile-xyz.scm (guile-png): Update to 0.4.1.
  [arguments]: Remove extra phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:01 +02:00
Artyom V. Poptsov 99a61391d7
gnu: guile-png: Fix cross-building.
* gnu/packages/guile-xyz.scm (guile-png)[native-inputs]: Add guile-3.0,
  guile-lib, guile-zlib and guile-smc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:01 +02:00
Artyom V. Poptsov 8b1b9334e4
gnu: guile-png: Update to 0.4.0.
* gnu/packages/guile-xyz.scm (guile-png): Update to 0.4.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:01 +02:00
Artyom V. Poptsov 350a65cd65
gnu: guile-ics: Update to 0.5.0.
* gnu/packages/guile-xyz.scm (guile-ics): Update to 0.5.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:01 +02:00
Artyom V. Poptsov da39980b79
gnu: guile-ini: Fix cross-building.
* gnu/packages/guile-xyz.scm (guile-ini)[native-inputs]: Add guile-3.0,
  guile-lib and guile-smc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:01 +02:00
Artyom V. Poptsov 10888f26e0
gnu: guile-ini: Update to 0.5.3.
* gnu/packages/guile-xyz.scm (guile-ini): Update to 0.5.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:01 +02:00
Artyom V. Poptsov 761d78ea95
gnu: guile-smc: Fix cross-building.
* gnu/packages/guile-xyz.scm (guile-smc)[native-inputs]: Add guile-3.0 and
  guile-lib.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:01 +02:00
Artyom V. Poptsov 0a5998941a
gnu: guile-smc: Update to 0.6.0.
* gnu/packages/guile-xyz.scm (guile-smc): Update to 0.6.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:00 +02:00
Denis 'GNUtoo' Carikli 0c521c81fa
gnu: fakeroot: Update to 1.31.
* gnu/packages/linux.scm (fakeroot): Update to 1.31.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-24 15:04:00 +02:00
Ludovic Courtès e54d574add
gnu: guix: Depend on 'graphviz-minimal'.
* gnu/packages/package-management.scm (guix)[arguments]: Add
'set-font-path' phase.
[native-inputs]: Change GRAPHVIZ to GRAPHVIZ-MINIMAL.  Add
FONT-GHOSTSCRIPT.
(guix-daemon)[native-inputs]: Remove "font-ghostscript".
[arguments]: Delete 'set-font-path' phase.
2023-05-24 15:04:00 +02:00
Ludovic Courtès d5ca1a7243
gnu: graphviz: Add "minimal" variant.
* gnu/packages/graphviz.scm (graphviz-minimal): New variable.
2023-05-24 15:04:00 +02:00
Ludovic Courtès 689460f82a
services: guix: Depend on 'avahi-daemon' when 'discover?' is set.
Previously, with shepherd 0.10.0, guix-daemon would start quickly,
possibly before avahi-daemon is running.  Consequently, its "guix
discover" child process would exit immediately with a warning saying
"Avahi daemon is not running".

* gnu/services/base.scm (guix-shepherd-service): When DISCOVER? is true,
add 'avahi-daemon' to 'requirement'.
2023-05-24 15:04:00 +02:00
Ludovic Courtès 8b18fa7e07
gnu: python-mpi4py: Update to 3.1.4.
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.1.4.
2023-05-24 15:03:59 +02:00
Andy Tai 514644c102
gnu: ddd: Update to 3.4.0
* gnu/packages/debug.scm (ddd): Update to 3.4.0

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-24 20:43:08 +08:00
kiasoc5 0b6bcc747d
gnu: lolcat: Update to 1.4.
* gnu/packages/toys.scm (lolcat): Update to 1.4.
[version]: Switch to release tag.
[arguments]: Use G-expressions. Remove trailing #t.
<#:phases>: Replace assoc-ref with #$output.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-24 20:35:31 +08:00
Janneke Nieuwenhuizen c57693846c
home: services: ssh: Do not empty ~/.ssh/authorized_keys by default.
The default was an empty list which would remove any ~/.ssh/authorized_keys
file and replace it with a symlink to an empty file.  On some systems, notably
Ubuntu 22.10, the guix home generated ~/.ssh/authorized_keys file does not
allow login.

* doc/guix.texi (Secure Shell): Update, describe default #false value.
* gnu/home/services/ssh.scm (<home-openssh-configuration>)
[authorized-keys]: Change default to #f.
(openssh-configuration-files): Cater for default #f value: Do not register
"authorized_keys".
2023-05-24 11:56:12 +02:00
Artyom Bologov 0d82148858
gnu: Update sbcl-njson to 1.1.0.
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.1.0.
  [inputs]: Add sbcl-jzon.
  [arguments]: Add njson/jzon to 'asd-systems'.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-05-24 11:20:36 +02:00
Artyom Bologov 233d3bae95
gnu: Update sbcl-nactivitypub to 0.0.5.
* gnu/packages/lisp-xyz.scm (sbcl-nactivitypub): Update to 0.0.5.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-05-24 11:06:49 +02:00
Andre A. Gomes ae7a7d76d6
gnu: nyxt: Update to 3.0.0.
* gnu/packages/web-browsers.scm (nyxt): Update to 3.0.0.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
2023-05-24 10:48:50 +02:00
Andre A. Gomes 556e9db251
gnu: sbcl-nasdf: Update to 0.1.5.
* gnu/packages/lisp-xyz.scm (sbcl-nasdf): Update to 0.1.5.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
2023-05-24 10:48:50 +02:00
Pierre Neidhardt 27a94b21b7
gnu: sbcl-nfiles: Update to 1.1.3.
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 1.1.3.
2023-05-24 10:48:50 +02:00
Pierre Neidhardt a882b4856a
gnu: sbcl-serapeum: Update to 20230524.
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230524.
2023-05-24 10:48:50 +02:00
Edison Ibáñez fc79528ae3
gnu: xonsh: Update to 0.14.0.
* gnu/packages/shells.scm (xonsh): Update to 0.14.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-24 11:41:50 +03:00
André Batista 9026600df2
gnu: prosody: Update to 0.12.3.
* gnu/packages/messaging.scm (prosody): Update to 0.12.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-24 11:07:03 +03:00
Alex Devaure d905fbfce6
gnu: libfprint: Fix building with newer meson.
* gnu/packages/freedesktop.scm (libfprint)[arguments]: Adjust
configure-flags to explicitly link to nss.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-24 10:57:07 +03:00
Andy Tai b4cfeda3a6
gnu: icewm: Update to 3.3.4.
* gnu/packages/wm.scm (icewm): Update to 3.3.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-24 10:46:07 +03:00
Arne Babenhauserheide 6d3169af64
gnu: htmlcxx: add --std=c++11 to configure flags.
* gnu/packages/web.scm (htmlcxx): add CXXFLAGS to configure-flag. C++17
  removed dynamic exception specifications.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-24 10:41:33 +03:00
Efraim Flashner b02e7504b0
gnu: xygrib: Build with newer proj.
* gnu/packages/geo.scm (xygrib)[source]: Add upstream patch to build
with newer version of proj.
[inputs]: Replace proj-7 with proj.
* gnu/packages/patches/xygrib-newer-proj.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2023-05-24 10:14:02 +03:00
Efraim Flashner 24f18482d3
gnu: xygrib: Fix building with newer openjpeg.
* gnu/packages/geo.scm (xygrib)[source]: Adjust snippet to also search
for newer openjpeg versions.
2023-05-24 10:12:50 +03:00
Efraim Flashner 007b156a3e
gnu: font-gnu-unifont: Remove more pre-generated files.
* gnu/packages/fonts.scm (font-gnu-unifont)[source]: Adjust the snippet
to remove more pre-generated files.
2023-05-24 09:49:25 +03:00
muradm e02584b456
services: cups: Add cups PAM service.
Fixes <https://issues.guix.gnu.org/63198>.

Have the CUPS service extend pam-root-service-type providing minimal
configuration to authenticate users.  Since PAM authentication is provided,
the regular cups package can be used as default instead of the minimal,
PAM-lacking variant.

* gnu/services/cups.scm (cups-configuration)
[cups]: Replace cups-minimal with cups.
[allow-empty-password?]: PAM service configuration permitting empty passwords.
(opaque-cups-configuration): Likewise.
(cups-pam-service): New procedure.
(cups-service-type): Extend pam-root-service-type with cups-pam-service.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-05-23 20:26:19 -04:00
Antero Mejr 297ba5c15a
gnu: Add python-vulture.
* gnu/packages/python-check.scm (python-vulture): New variable.

Signed-off-by: jgart <jgart@dismail.de>
2023-05-23 12:29:48 -05:00
Remco van 't Veer cb193c0dd1
gnu: ruby-2.7-fixed: Upgrade to 2.7.8 [fixes CVE-2023-{28755, 28756}]
Fixes: CVE-2023-28755 (ReDoS vulnerability in URI), and
CVE-2023-28756 (ReDoS vulnerability in Time).

* gnu/packages/ruby.scm (ruby-2.7-fixed): Update to 2.7.8.
(ruby-2.7)[replacement]: Graft.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-05-23 16:37:04 +02:00