8659f5e3ee
gnu: ztoolkit-rsvg: Drop package label.
...
* gnu/packages/audio.scm (ztoolkit-rsvg)[propagated-inputs]: Use
MODIFY-INPUTS.
2023-05-16 11:21:47 +02:00
2d62262ead
gnu: ztoolkit: Update to 0.1.2.
...
* gnu/packages/audio.scm (ztoolkit): Update to 0.1.2.
2023-05-16 11:21:47 +02:00
fe01acea56
gnu: rust-trybuild-1: Update to 1.0.77.
...
* gnu/packages/crates-io.scm (rust-trybuild-1): Update to 1.0.77.
[cargo-inputs]: Add rust-basic-toml-0.1, rust-serde-derive-1. Remove
rust-toml-0.5.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-16 09:34:29 +03:00
8b45602465
gnu: Add rust-basic-toml-0.1.
...
* gnu/packages/crates-io.scm (rust-basic-toml-0.1): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-16 09:33:44 +03:00
242cc93438
gnu: tofi: Build the man-pages.
...
* gnu/packages/xdisorg.scm (tofi)[native-inputs]: Add scdoc.
2023-05-15 22:29:35 +03:00
15838db973
gnu: tofi: Update to 0.9.1.
...
* gnu/packages/xdisorg.scm (tofi): Update to 0.9.1.
[source]: Add patch to fix building on 32-bit systems.
* gnu/packages/patches/tofi-32bit-compat.patch.
* gnu/local.mk (dist_patch_DATA): Register it.
Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-15 22:29:35 +03:00
d9c0280d5e
gnu: tokyocabinet: Fix building on non-x86 systems.
...
* gnu/packages/databases.scm (tokyocabinet)[arguments]: Adjust
configure-flags to not enable x86 specific cflags when building for
other architectures.
2023-05-15 21:33:56 +03:00
6e38ec447f
gnu: vulkan-loader: Limit tests to x86_64 and i686.
...
* gnu/packages/vulkan.scm (vulkan-loader)[arguments]: Only run the tests
when building on x86_64-linux or i686-linux.
2023-05-15 17:08:32 +03:00
bcda49b656
gnu: Use dummy linker for '*-elf' systems.
...
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Return "no-ld.so" for
systems with a "-elf" suffix.
2023-05-15 21:31:51 +08:00
4975a517c8
gnu: Add font-recursive.
...
* gnu/packages/fonts.scm (font-recursive): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-15 18:25:07 +08:00
2d98244c9d
gnu: alacritty: Update how we patch libraries.
...
* gnu/packages/terminals.scm (alacritty)[arguments]: Rewrite the
'add-absolute-library-references phase to search all of the rust sources
and patch the necessary libraries.
2023-05-15 13:06:07 +03:00
79e9a70c94
gnu: lighttpd: Update to 1.4.70.
...
* gnu/packages/web.scm (lighttpd): Update to 1.4.70.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-15 18:00:58 +08:00
bf4b2ed165
gnu: Add font-scientifica.
...
* gnu/packages/fonts.scm (font-scientifica): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-15 17:50:56 +08:00
13e252af79
gnu: mariadb: Fix building on riscv64-linux.
...
* gnu/packages/databases.scm (mariadb)[arguments]: Add a phase when
building for riscv64-linux to apply a patch.
[native-inputs]: When building for riscv64-linux add patch and a patch
file.
* gnu/packages/patches/mariadb-rocksdb-atomic-linking.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2023-05-15 11:16:39 +03:00
56bf67505a
gnu: emacs-ement: Update to 0.9.1.
...
* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.9.1.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-05-15 11:19:40 +04:00
c5fa9dd0e9
gnu: cmus: Enable MPRIS support.
...
* gnu/packages/music.scm (cmus): Enable MPRIS support.
[inputs]: Add elogind.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-14 23:14:26 +02:00
5f49e195ca
gnu: csvkit: Update to 1.1.1.
...
* gnu/packages/wireservice.scm (csvkit): Update to 1.1.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-14 23:14:25 +02:00
0c1803571d
gnu: python-agate: Update to 1.7.1
...
* gnu/packages/wireservices.scm (python-agate): Update to 1.7.1.
[native-inputs]: Add python-agate-locales.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-14 23:14:25 +02:00
7070d3d9e8
gnu: Add python-agate-locales.
...
* gnu/packages/wireservice.scm (python-agate-locales): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-14 23:14:25 +02:00
b37303f06d
gnu: python-agate-sql: Update to 0.5.9.
...
* gnu/packages/wireservices.scm (python-agate-sql): Update to 0.5.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-14 23:14:25 +02:00
192809e650
gnu: python-agate-dbf: Update to 0.2.2.
...
* gnu/packages/wireservices.scm (python-agate-dbf): Update to 0.2.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-14 23:14:25 +02:00
da6e6d38f3
gnu: python-pytest-httpx: Update to 0.22.0, fix build.
...
* gnu/packages/python-check.scm (python-pytest-httpx): Update to 0.22.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Do not override the 'check phase.
Signed-off-by: Vinicius Monego <monego@posteo.net>
2023-05-14 16:34:22 -03:00
ede269edd0
gnu: python-scikit-rf: Update to 0.27.1.
...
* gnu/packages/engineering.scm (python-scikit-rf): Update to 0.27.1.
2023-05-14 16:34:22 -03:00
f0b4cfb475
gnu: vim: Update to 9.0.1384.
...
* gnu/packages/vim.scm (vim): Update to 9.0.1384.
2023-05-14 21:05:07 +03:00
b3adba7b5e
gnu: linux-libre 5.15: Update to 5.15.111.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.111.
(linux-libre-5.15-pristine-source): Update hash.
2023-05-14 13:31:17 -04:00
c8eed72f33
gnu: linux-libre 6.1: Update to 6.1.28.
...
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.28.
(linux-libre-6.1-pristine-source): Update hash.
2023-05-14 13:31:17 -04:00
7fa98ce048
gnu: linux-libre 6.2: Update to 6.2.15.
...
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.15.
(linux-libre-6.2-pristine-source): Update hash.
2023-05-14 13:31:12 -04:00
7b00b155d8
gnu: Add morss.
...
* gnu/packages/syndication.scm (morss): New variable.
2023-05-14 11:10:24 -03:00
c5ebf6ff97
gnu: python-cmaes: Update to 0.9.1.
...
* gnu/packages/machine-learning.scm (python-cmaes): Update to 0.9.1.
[source, home-page]: Follow redirect.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Remove python-setuptools, python-wheel.
2023-05-14 11:10:24 -03:00
52c9400724
gnu: libshout-idjc: Update to 2.4.6.
...
* gnu/packages/audio.scm (libshout-idjc): Update to 2.4.6.
[inputs]: Add libshout.
[home-page]: Follow redirect.
2023-05-14 11:10:24 -03:00
5cbf06ff95
gnu: pre-commit: Update to 3.3.1.
...
* gnu/packages/version-control.scm (pre-commit): Update to 3.3.1.
2023-05-14 11:10:24 -03:00
30af248f1d
gnu: mlt: Update to 7.16.0.
...
* gnu/packages/video.scm (mlt): Update to 7.16.0.
2023-05-14 11:10:23 -03:00
a6b05e89ee
gnu: mixxx: Update to 2.3.5.
...
* gnu/packages/music.scm (mixxx): Update to 2.3.5.
2023-05-14 11:10:23 -03:00
1442d5d6de
gnu: python-anyqt: Update to 0.2.0.
...
* gnu/packages/python-xyz.scm (python-anyqt): Update to 0.2.0.
2023-05-14 11:10:23 -03:00
be18d943ba
gnu: python-opentsne: Update to 0.7.1.
...
* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.7.1.
2023-05-14 11:10:17 -03:00
eb7312401e
gnu: guix-build-coordinator: Update to 0-82.2c9e004.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-82.2c9e004.
2023-05-14 13:47:42 +01:00
38cfe61780
gnu: guix-build-coordinator: Neaten up the package definitions.
...
Remove duplication and redundant append calls.
* gnu/packages/package-management.scm (guix-build-coordinator)[inputs]: Always
add sqitch.
[propagated-inputs]: Always add guile-fibers-next.
(guix-build-coordinator-agent-only)[arguments]: Remove unnecessary duplication
of phases.
[propagated-inputs]: Remove unnecessary append.
2023-05-14 13:46:22 +01:00
70986f052a
gnu: gcc: Change make-gccgo to use gexp's.
...
As otherwise this seems to generate broken derivations for i586-gnu.
* gnu/packages/gcc.scm (make-gccgo): Use gexp's for the package arguments.
2023-05-14 13:43:06 +01:00
ded8cdbe89
gnu: gcc: Change custom-gcc to use gexp's.
...
As this seems to be generating broken derivations for i586-gnu otherwise.
* gnu/packages/gcc.scm (custom-gcc): Use gexp's for the generated package
arguments.
2023-05-14 13:43:06 +01:00
69d74e35b2
gnu: discrover: Remove package labels.
...
* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Remove package
labels.
2023-05-14 13:48:01 +02:00
1c88229d44
gnu: rmath-standalone: Set timezone variables.
...
These variables are needed by R's configure script.
* gnu/packages/statistics.scm (rmath-standalone)[arguments]: Add 'set-timezone
phase; remove trailing #T from 'chdir phase.
2023-05-14 13:47:11 +02:00
8ec227471a
gnu: diamond: Update to 2.1.6.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 2.1.6.
[arguments]: Do not disable tests; pass configure flag to avoid SSE4 and AVX2
in the interest of compatibility.
[license]: Set to GPLv3+.
2023-05-14 13:39:05 +02:00
6754eb339c
gnu: delly: Simplify.
...
* gnu/packages/bioinformatics.scm (delly)[source]: Simplify snippet.
[arguments]: Do not use quasiquote; simplify 'install-templates phase.
2023-05-14 13:29:34 +02:00
302e7b7820
gnu: python-pybigwig: Update to 0.3.22.
...
* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.22.
[source]: Simplify snippet.
[arguments]: Explicitly disable tests; simplify 'link-with-libBigWig phase.
[build-system]: Use pyproject-build-system.
2023-05-14 13:26:21 +02:00
7e303658d7
gnu: codingquarry: Use G-expression.
...
* gnu/packages/bioinformatics.scm (codingquarry)[arguments]: Use G-expression
to simplify 'install phase. Install files to /share/codingquarry prefix.
[native-search-paths]: Adjust prefix.
[native-inputs]: Move python-2 from here...
[inputs]: ...to here.
2023-05-14 13:21:59 +02:00
68ccd1a0d8
gnu: blast+: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (blast+): Update to 2.14.0.
[arguments]: Remove trailing #T from build phases; let WHICH* return #FALSE on
failure; use G-expression.
[inputs]: Drop package labels.
2023-05-14 12:58:22 +02:00
28bfc5cd08
gnu: cpp: Mention that autoload prevents module cycles.
...
* gnu/packages/cpp.scm: Add a comment on the #:autoload to explain that
serialization depends on cpp.
2023-05-14 12:29:04 +02:00
006bf1ba97
gnu: Add lager.
...
* gnu/packages/cpp.scm (lager): New variable.
2023-05-14 12:22:30 +02:00
882f55ff73
gnu: Add zug.
...
* gnu/packages/cpp.scm (zug): New variable.
2023-05-14 12:22:30 +02:00
8d6f66d621
gnu: Add immer.
...
* gnu/packages/cpp.scm (immer): New variable.
2023-05-14 12:22:29 +02:00
72919598c8
gnu: Add c-rrb.
...
* gnu/packages/c.scm (c-rrb): New variable.
2023-05-14 12:22:29 +02:00
f8d06e2c32
gnu: nlohmann-json: Improve package style.
...
* gnu/package/cpp.scm (nlohmann-json)[source]<snippet>: Fit to 80 chars width.
Use G-Expressions.
[arguments]: Use G-Expressions.
2023-05-14 12:22:29 +02:00
4a3f946408
gnu: nlohmann-json: Update to 3.11.2.
...
* gnu/packages/cpp.scm (nlohmann-json): Update to 3.11.2.
[source]<snippet>: Adjust accordingly.
[native-inputs]<json_test_data>: Update to 3.1.0.
2023-05-14 12:22:29 +02:00
58e84ec9af
gnu: Rename json-modern-cxx to nlohmann-json.
...
* gnu/packages/cpp.scm (nlohmann-json): New variable.
(json-modern-cxx): Mark as deprecated alias.
(xtl, jsonnet)[inputs]: Use nlohmann-json.
* gnu/packages/build-tools.scm (bear)[inputs]: Likewise.
* gnu/packages/cybersecurity.scm (blacksmith)[inputs]: Likewise.
* gnu/packages/databases.scm (sqlitebrowser)[inputs]: Adjust comment.
* gnu/packages/games.scm (openrct2)[inputs]: Use nlohmann-json.
* gnu/packages/graphics.scm (f3d)[native-inputs]: Likewise.
* gnu/packages/hardware.scm (openrgb)[inputs]: Likewise.
[arguments]: Adjust accordingly.
* gnu/packages/image-processing.scm (paraview)[inputs]: Adjust comment.
* gnu/packages/irods.scm (irods, irods-client-icommands)[inputs]: Use
nlohmann-json.
* gnu/packages/jupyter.scm (xeus)[inputs]: Likewise.
* gnu/packages/messaging.scm (mtxclient, nheko)[inputs]: Likewise.
* gnu/packages/text-editors.scm (jucipp)[inputs]: Likewise.
* gnu/packages/video.scm (mktoolnix)[inputs]: Likewise.
* gnu/packages/xdisorg.scm (nwg-launchers)[inputs]: Likewise.
2023-05-14 12:22:29 +02:00
3c8d0f9e71
gnu: bitcoin-core: Update to 23.1.
...
* gnu/packages/finance.scp (bitcoin-core): Update to 23.1.
[inputs]: Add sqlite.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-05-14 10:38:54 +02:00
930e6e3e7a
gnu: mesa-opencl: Remove reference to patch.
...
Fixes <https://bugs.gnu.org/63456 >.
* gnu/packages/patches/mesa-opencl-all-targets.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gl.scm (mesa-opencl)[source]: Remove patch application.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-05-14 10:19:39 +02:00
56f52639bb
gnu: poke: Update to 3.2.
...
* gnu/packages/engineering.scm (poke): Update to 3.2.
2023-05-14 10:21:12 +03:00
be21541778
gnu: mousepad: Update to 0.6.1.
...
* gnu/packages/xfce.scm (mousepad): Update to 0.6.1.
2023-05-14 15:10:52 +08:00
3b87e7ce52
gnu: ristretto: Update to 0.13.1.
...
* gnu/packages/xfce.scm (ristretto): Update to 0.13.1.
2023-05-14 15:10:52 +08:00
9c1b9bfef3
gnu: Add Iosevka comfy font.
...
* gnu/packages/fonts.scm (font-iosevka-comfy): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-14 11:31:48 +08:00
03af9d56fb
gnu: Add bbcsdl.
...
* gnu/packages/game-development.scm (bbcsdl): New variable.
2023-05-14 11:09:22 +08:00
a44f5ec73d
gnu: Add font-spleen.
...
* gnu/packages/fonts.scm (font-spleen): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-14 10:52:42 +08:00
5585fbbfd0
gnu: dwl: Update to 0.4.
...
* gnu/packages/wm.scm (dwl): Update to 0.4.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-14 10:43:14 +08:00
270db2a56b
gnu: Add xuidesigner.
...
* gnu/packages/music.scm (xuidesigner): New variable.
2023-05-13 18:26:25 +02:00
18d6173214
gnu: shepherd: Fetch code from 'mirror://gnu'.
...
* gnu/packages/admin.scm (shepherd-0.10): Fix URL.
2023-05-13 17:25:48 +02:00
1d9efb858f
gnu: shepherd: Add 0.10.0.
...
* gnu/packages/admin.scm (shepherd-0.10): New variable.
(guile2.2-shepherd): Inherit from SHEPHERD-0.10.
2023-05-13 16:27:40 +02:00
ed1e792039
gnu: python-sentry-sdk: Disable tests not working with pytest-7.
...
* gnu/packages/python-xyz.scm (python-sentry-sdk)[arguments]: Update 'check'
phase.
2023-05-13 14:52:17 +02:00
6af7a94446
gnu: guile-opengl: Update to 0.2.0.
...
* gnu/packages/gl.scm (guile-opengl): Update to 0.2.0. Remove obsolete build
system hack.
(guile3.0-opengl): Remove obsolete build system hack.
2023-05-13 07:42:21 -04:00
882ca2011e
gnu: diffoscope: Update to 242.
...
* gnu/packages/diffoscope.scm (diffoscope): Update to 242.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-13 18:38:28 +08:00
cc47c5277d
gnu: ftxui: Build ftxui-benchmark.
...
* gnu/packages/cpp.scm (ftxui)[native-inputs]: Add benchmark.
[arguments]: Remove #:phases.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-13 17:54:14 +08:00
1fa30c597b
gnu: raylib: Fix audio and use system glfw.
...
* gnu/packages/game-development.scm (raylib)[inputs]: Use glfw and pluseaudio.
[arguments]: Set flags for glfw and pulseaudio.
2023-05-13 17:35:19 +08:00
733c8a6c54
gnu: raylib: Update to 4.5.0.
...
* gnu/packages/game-development.scm (raylib): Update to 4.5.0.
2023-05-13 17:35:19 +08:00
23ca566e74
gnu: python-rapidjson: Use pyproject-build-system.
...
* gnu/packages/python-web.scm (python-rapidjson)[build-system]: Use
pyproject-build-system.
[arguments]: Do not use custom 'build and 'check phases.
2023-05-13 11:03:52 +02:00
c77d5eaaf5
gnu: python-markdown-it-py: Simplify by using pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-markdown-it-py)[arguments]: Remove
custom 'build and 'install phases.
[build-system]: Use pyproject-build-system.
2023-05-13 11:03:52 +02:00
1a2eb983cb
gnu: python-sphinx-panels: Use older docutils.
...
* gnu/packages/sphinx.scm (python-sphinx-panels)[propagated-inputs]: Replace
python-docutils with python-docutils-0.15.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
2023-05-13 11:03:52 +02:00
cf89a215ce
gnu: ghc-tasty: Add missing dependency on i686-linux.
...
Fixes <https://issues.guix.gnu.org/63421 >.
* gnu/packages/haskell-check.scm (ghc-tasty)[inputs]: Conditionally
add ghc-unbounded-delays.
2023-05-13 09:34:35 +02:00
d67a3622ef
gnu: python-orjson: Fix version string of Python module.
...
* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Remove invalid
characters from version string.
2023-05-12 23:23:12 +02:00
351d193eb1
gnu: python-orjson: Reuse phases from pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Include modules from
pyproject-build-system; use their 'build and 'install phases instead of
duplicating their contents.
2023-05-12 23:22:01 +02:00
27341afe53
gnu: python-canonicaljson: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-canonicaljson)[arguments]: Remove custom
'build, 'check, and 'install phases.
[build-system]: Use pyproject-build-system.
2023-05-12 23:06:34 +02:00
1a21f4117e
gnu: python-pyproject-metadata: Simplify by using pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-pyproject-metadata)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
2023-05-12 22:59:41 +02:00
db3d74008a
gnu: python-seaborn: Simplify by using pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
2023-05-12 22:56:42 +02:00
206815b796
gnu: shrinkwrap: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (shrinkwrap)[arguments]: Remove.
[build-system]: Use pyproject-build-system.
2023-05-12 22:53:46 +02:00
e4ca1bcea5
gnu: jamm: Use G-expression.
...
* gnu/packages/bioinformatics.scm (jamm)[arguments]: Use G-expression.
2023-05-12 22:50:08 +02:00
662e2e82b1
gnu: arriba: Use SEARCH-INPUT-FILE and -DIRECTORY.
...
* gnu/packages/bioinformatics.scm (arriba)[arguments]:
Use SEARCH-INPUT-DIRECTORY and SEARCH-INPUT-FILE; use G-expression; drop
trailing #T from build phases.
2023-05-12 22:40:18 +02:00
001d9b1c64
gnu: multichoose: Clean up.
...
* gnu/packages/bioinformatics.scm (multichoos): Fix indentation.
[arguments]: Use G-expression.
2023-05-12 22:33:44 +02:00
6d72af0747
gnu: samblaster: Update to 0.1.26.
...
* gnu/packages/bioinformatics.scm (samblaster): Update to 0.1.26.
2023-05-12 22:31:22 +02:00
6331e41cde
gnu: samblaster: Simplify.
...
* gnu/packages/bioinformatics.scm (samblaster): Fix indentation.
[arguments]: Use G-expression; drop trailing #T from 'install phase.
[description]: Use double spacing between all sentences.
2023-05-12 22:29:38 +02:00
7da3ca1bd7
gnu: methyldackel: Update to 0.6.1.
...
* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1.
[arguments]: Set LIBBIGWIG variable instead of patching Makefile.
[inputs]: Replace htslib-1.9 with htslib.
2023-05-12 22:27:17 +02:00
7a199bb74c
gnu: methyldackel: Simplify arguments.
...
* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Use list, drop
argument list.
[native-inputs]: Drop package label.
2023-05-12 22:24:30 +02:00
5d446e439d
gnu: phast: Simplify by using G-expression.
...
* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and
drop trailing #T from build phases.
2023-05-12 22:23:23 +02:00
fac8721bfd
gnu: ribotaper: Simplify with G-expression.
...
* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Use G-expression and
drop trailing #T from build phase.
2023-05-12 22:21:14 +02:00
0e20ed322d
gnu: sra-tools: Do link with libxml2.
...
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use G-expression for
clarity; drop trailing #T from build phases; modify 'configure phase to
dynamically link with libxml2.
[inputs]: Drop package labels; add libxml2.
2023-05-12 21:54:01 +02:00
8ba3bf6564
gnu: ncbi-vdb: Ensure that vdb-sqlite is installed.
...
The most important change here is the addition of the 'install-libs phase.
All other changes are just the result of switching to G-expressions.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add 'install-libs
phase; use G-expression; drop trailing #T from build phases.
[inputs]: Drop package labels.
2023-05-12 21:51:41 +02:00
263f235cd0
gnu: Add python-mgatk.
...
* gnu/packages/bioinformatics.scm (python-mgatk): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-05-12 15:30:44 +02:00
6419ca7fd7
gnu: Add Free as in Freedom (2.0).
...
* gnu/packages/fsf.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2023-05-12 20:22:02 +08:00
b363fab46f
gnu: sbcl-serapeum: Update to 20230511.
...
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230511.
2023-05-12 11:56:20 +02:00
e3e011a081
gnu: python-lightning-cloud: Use older version of fastapi.
...
The variant of the fastapi package must match that of
python-pytorch-lightning.
* gnu/packages/machine-learning.scm (python-lightning-cloud)
[propagated-inputs]: Replace python-fastapi with
python-fastapi-for-pytorch-lightning.
2023-05-12 10:50:01 +02:00
a070eb7a15
gnu: Add python-optparse-pretty.
...
* gnu/packages/python-xyz.scm (python-optparse-pretty): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-05-12 09:43:20 +02:00
9d05f9a9f5
gnu: Add r-dropletutils.
...
* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
2023-05-12 09:36:26 +02:00
a5bae9c748
gnu: Add r-ggpattern.
...
* gnu/packages/cran.scm (r-ggpattern): New variable.
2023-05-12 09:17:07 +02:00
6c6e2b5fbc
gnu: Add r-gridpattern.
...
* gnu/packages/cran.scm (r-gridpattern): New variable.
2023-05-12 09:17:07 +02:00
d07342b166
gnu: texlive-datetime2: Add needed propagated-inputs.
...
Required packages can be seen with:
$ rg RequirePackage $(guix build texlive-datetime2)
* gnu/packages/tex.scm (texlive-datetime2)[propagated-inputs]: Add
TEXLIVE-ETOOLBOX, TEXLIVE-LATEX-XKEYVAL, and TEXLIVE-TRACKLANG.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-05-11 23:56:24 +02:00
277c24442c
gnu: Add emacs-framemove.
...
* gnu/packages/emacs-xyz.scm (emacs-framemove): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-05-11 23:55:43 +02:00
60cf9866cf
gnu: texlive-ddphonism: Replace deprecated input.
...
* gnu/packages/tex.scm (texlive-ddphonism)[propagated-inputs]: Replace
deprecated texlive-latex-tools by texlive-tools.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-05-11 22:33:28 +02:00
713f4e57f7
gnu: texlive-totpages: Replace deprecated input.
...
* gnu/packages/tex.scm (texlive-totpages)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-05-11 22:33:28 +02:00
012a514edb
gnu: texlive-totcount: Replace deprecated input.
...
* gnu/packages/tex.scm (texlive-totcount)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-05-11 22:33:27 +02:00
43c0bf757a
gnu: texlive-ncctools: Replace deprecated input.
...
* gnu/packages/tex.scm (texlive-ncctools)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-05-11 22:33:27 +02:00
b924254163
gnu: texlive-soulutf8: Replace deprecated inputs.
...
* gnu/packages/tex.scm (texlive-soulutf8)[propagated-inputs]: Replace
deprecated texlive-generic-etexcmds by texlive-etexcmds and deprecated
texlive-generic-infwarerr by texlive-infwarerr.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-05-11 22:33:26 +02:00
345ec9f33a
gnu: texlive-xetex: Replace deprecated inputs.
...
* gnu/packages/tex.scm (texlive-xetex)[propagated-inputs]: Replace deprecated
texlive-generic-atbegshi by texlive-atbegshi and deprecated
texlive-latex-atveryend by texlive-atveryend.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-05-11 22:33:24 +02:00
6a02462ba2
gnu: python-skranger: Install library.
...
* gnu/packages/python-xyz.scm (python-skranger)[arguments]: Install the
library that we've just built.
2023-05-11 20:55:54 +02:00
642b73a029
gnu: Add python-skranger.
...
* gnu/packages/python-xyz.scm (python-skranger): New variable.
2023-05-11 20:41:16 +02:00
ee4d9a74b2
Revert "gnu: Add python-pytest-enabler."
...
This reverts commit 0a8c46e89f
2023-05-11 20:41:16 +02:00
f3a23fed20
gnu: lagrange: Update to 1.15.9.
...
* gnu/packages/web-browsers.scm (lagrange): Update to 1.15.9.
2023-05-11 21:33:05 +03:00
b9a87d02e8
gnu: mutt: Update to 2.2.10.
...
* gnu/packages/mail.scm (mutt): Update to 2.2.10.
2023-05-11 21:33:05 +03:00
ce6a1b29bd
gnu: qiv: Update to 2.3.3.
...
* gnu/packages/image-viewers.scm (qiv): Update to 2.3.3.
2023-05-11 21:33:05 +03:00
7120dc6e16
gnu: git-annex: Update to 10.20230407.
...
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20230407.
2023-05-11 21:33:05 +03:00
96e013f964
gnu: global: Update to 6.6.10.
...
* gnu/packages/code.scm (global): Update to 6.6.10.
2023-05-11 21:33:02 +03:00
23a575f97c
gnu: Add python-omnipath.
...
* gnu/packages/python-web.scm (python-omnipath): New variable.
2023-05-11 17:12:54 +02:00
6cac909c95
gnu: Add python-inflect.
...
* gnu/packages/python-xyz.scm (python-inflect): New variable.
2023-05-11 17:12:54 +02:00
0616939641
gnu: Add python-docrep.
...
* gnu/packages/python-xyz.scm (python-docrep): New variable.
2023-05-11 17:12:54 +02:00
0a8c46e89f
gnu: Add python-pytest-enabler.
...
* gnu/packages/python-check.scm (python-pytest-enabler): New variable.
2023-05-11 17:12:54 +02:00
5e07608a30
gnu: Add python-adjusttext.
...
* gnu/packages/python-xyz.scm (python-adjusttext): New variable.
2023-05-11 17:12:54 +02:00
b8e912c35f
gnu: barrier: Include NULL compatibility.
...
Fixes <https://bugs.gnu.org/63244 >.
Reported by <john@fremlin.org>
* gnu/packages/barrier.scm (barrier)[arguments]: Use G-exp, add phases
including NULL macro.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-11 16:38:28 +02:00
92a7817fcb
gnu: git: Update to 2.40.1 [security fixes].
...
Fixes CVE-2023-25652 and CVE-2023-29007.
* gnu/packages/version-control.scm (git): Update to 2.40.1.
(git-minimal)[arguments]: Rewrite to use gexps. In
'remove-unusable-perl-commands' phase, make "git-add--interactive"
removal conditional.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-05-11 16:38:28 +02:00
b984ac16dc
gnu: laby: Add patch for being able to execute game code.
...
Reported upstream at https://github.com/sgimenez/laby/pull/68
* gnu/packages/patches/laby-use-tmpdir-from-runtime.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/games.scm (laby)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-11 16:38:28 +02:00
8cb6fc32a6
gnu: laby: Make laby function in pure environments.
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* gnu/packages/games.scm (laby)
[build-system]: Switch to 'glib-or-gtk-build-system'.
[inputs]: Add 'gdk-pixbuf' and 'librsvg-for-system'.
[arguments]: Wrap to use SVG-enabled pixbuf loaders.cache.
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-11 16:38:28 +02:00
420b6a8555
gnu: laby: Use new package style.
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* gnu/packages/games.scm (laby)[arguments]: Use gexps.
Use "this-package-input" to locate package input.
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-11 16:38:28 +02:00
b718e42c96
gnu: Add oneDNN.
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* gnu/packages/machine-learning.scm (oneapi-dnnl): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-11 22:19:08 +08:00
af6ed2fc14
gnu: Add ISPC.
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* gnu/packages/c.scm (ispc): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-11 22:19:08 +08:00
4557c83a7d
gnu: python-distributed: Update to 2023.4.1.
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* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1.
[source]: Remove snippet.
[arguments]: Update build phase 'versioneer; restore 'sanity-check phase;
simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-importlib-metadata.
2023-05-11 15:59:22 +02:00
aa17958ca9
gnu: python-zict: Update to 3.0.0.
...
* gnu/packages/python-xyz.scm (python-zict): Update to 3.0.0.
[build-system]: Use pyproject-build-system.
[arguments]: Ignore optional lmdb test.
[native-inputs]: Add python-pytest-asyncio, python-pytest-repeat, and
python-pytest-timeout.
2023-05-11 15:59:22 +02:00
ab91da5004
gnu: python-dask: Update to 2023.4.1.
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* gnu/packages/python-xyz.scm (python-dask): Update to 2023.4.1.
[source]: Remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; update 'versioneer phase; add
'fix-pytest-config and 'pre-check phases; set #:test-flags.
[native-inputs]: Add python-click and python-importlib-metadata.
2023-05-11 15:59:22 +02:00
e1c3adb27d
gnu: python-fsspec: Update to 2023.5.0.
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* gnu/packages/python-xyz.scm (python-fsspec): Update to 2023.5.0.
[native-inputs]: Add python-pytest, python-pytest-mock, and python-numpy.
[propagated-inputs]: Add python-aiohttp, python-libarchive-c, python-requests,
and python-tqdm.
[arguments]: Add phase to embed the correct version string; disable tests that
need internet access.
[build-system]: Use pyproject-build-system.
[source]: Ftech sources with git to include tests.
2023-05-11 15:59:22 +02:00
468b5d9548
gnu: guile-gnutls: Fix cross-compilation.
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The patch was inadvertently removed in
5e1e674421
2023-05-11 13:21:45 +02:00
4c7b5207cb
gnu: supercollider: Update to 3.13.0.
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* gnu/packages/audio.scm (supercollider): Update to 3.13.0.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-11 18:46:04 +08:00
3972d5f03c
gnu: supercollider: Use G-expressions.
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* gnu/packages/audio.scm (supercollider)[source]: Use G-expression in snippet.
[arguments]: Use G-expressions.
<#:phases>: Replace `(assoc-ref outputs ...)` with `#$output`.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-11 18:29:57 +08:00
c2cac2e985
gnu: ftxui: Update to 4.0.0.
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* gnu/packages/cpp.scm (ftxui): Update to 4.0.0.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-05-11 18:15:25 +08:00
f2a5a32618
gnu: mpv-mpris: Update to 1.0.
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* gnu/packages/video.scm (mpv-mpris): Update to 1.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-11 12:27:03 +03:00
3d05d54918
gnu: python-pyopengl-accelerate: Update to 3.1.6.
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Restores compatibility with Python 3.10.
* gnu/packages/python-xyz.scm (python-pyopengl-accelerate): Update
to 3.1.6.
2023-05-11 09:43:41 +02:00
a13b742fa7
gnu: python-pyopengl: Update to 3.1.6.
...
* gnu/packages/python-xyz.scm (python-pyopengl): Update to 3.1.6.
2023-05-11 09:43:39 +02:00
705ddc6a4f
gnu: automake: Fix cross-build.
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This is a follow-up to commit
ea908c1c04
2023-05-11 09:03:44 +02:00
741a587958
gnu: autoconf: Fix cross-build.
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This is a follow-up to commit
8fa17cb6d5
2023-05-11 09:03:15 +02:00
b4e5844700
gnu: kodi: Fix build against latest mesa.
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* gnu/packages/patches/kodi-mesa-eglchromium.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kodi.scm (kodi)[source]: Use it.
2023-05-10 13:56:10 -05:00
7e15287055
gnu: kodi: Fix build with latest glibc.
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* gnu/packages/kodi.scm (kodi)[inputs]: Use most recent 'fmt' and 'spdlog'
packages.
* gnu/packages/logging.scm (spdlog-for-kodi): Delete.
2023-05-10 13:56:04 -05:00
b7534e4b5d
gnu: Add python-pytorch-lightning.
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* gnu/packages/machine-learning.scm (python-pytorch-lightning): New variable.
2023-05-10 19:27:08 +02:00
ff59c49c44
gnu: Add python-jsonargparse.
...
* gnu/packages/python-xyz.scm (python-jsonargparse): New variable.
2023-05-10 19:27:08 +02:00
e171a8bd88
gnu: Add python-docstring-parser.
...
* gnu/packages/python-xyz.scm (python-docstring-parser): New variable.
2023-05-10 19:27:08 +02:00
2ebd5b9adf
gnu: Add python-starsessions-for-pytorch-lightning.
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* gnu/packages/python-web.scm (python-starsessions-for-pytorch-lightning): New variable.
2023-05-10 19:27:08 +02:00
acb958938a
gnu: Add python-typeshed-client.
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* gnu/packages/python-xyz.scm (python-typeshed-client): New variable.
2023-05-10 19:27:08 +02:00
7b9e90e40d
gnu: python-torchvision: Update to 0.15.2.
...
* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.15.2.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
2023-05-10 19:27:08 +02:00
452fec7226
gnu: python-arrow: Update to 1.2.3.
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* gnu/packages/time.scm (python-arrow): Update to 1.2.3.
2023-05-10 19:27:08 +02:00
4d673ba743
gnu: Add python-types-requests.
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* gnu/packages/python-xyz.scm (python-types-requests): New variable.
2023-05-10 19:27:08 +02:00
26e2610673
gnu: Add python-types-urllib3.
...
* gnu/packages/python-xyz.scm (python-types-urllib3): New variable.
2023-05-10 19:27:07 +02:00
cb37197a24
gnu: Add python-fastapi-for-pytorch-lightning.
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* gnu/packages/python-web.scm (python-fastapi-for-pytorch-lightning): New variable.
2023-05-10 19:27:07 +02:00
3f05f625ea
gnu: Add python-starlette-for-fastapi-0.88.
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* gnu/packages/python-web.scm (python-starlette-for-fastapi-0.88): New variable.
2023-05-10 19:27:07 +02:00
463a598585
gnu: Add python-inquirer.
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* gnu/packages/machine-learning.scm (python-inquirer): New variable.
2023-05-10 19:27:07 +02:00
9220dee755
gnu: Add python-readchar.
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* gnu/packages/machine-learning.scm (python-readchar): New variable.
2023-05-10 19:27:07 +02:00
96c51a9dbf
gnu: python-scikit-optimize: Fix build with newer numpy and sklearn.
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* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with
git and apply patches.
2023-05-10 19:27:07 +02:00
ff3c55bb98
gnu: Add python-dateutils.
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* gnu/packages/time.scm (python-dateutils): New variable.
2023-05-10 19:27:07 +02:00
d071bc5a82
gnu: python-pillow-simd: Update to 9.2.0.
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* gnu/packages/python-xyz.scm (python-pillow-simd): Update to 9.2.0.
2023-05-10 19:27:07 +02:00
9e1cbc62e5
gnu: python-blessed: Update to 1.20.0.
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* gnu/packages/python-xyz.scm (python-blessed): Update to 1.20.0.
[source]: Simplify snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Use test-flags to avoid pytest-coverage; remove custom 'check phase.
[propagated-inputs]: Remove python-jinxed python-six.
[native-inputs]: Remove python-mock.
2023-05-10 19:27:07 +02:00
8f97d96ddf
gnu: Add python-torchmetrics.
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* gnu/packages/machine-learning.scm (python-torchmetrics): New variable.
2023-05-10 19:27:07 +02:00
1aa1a6a816
gnu: Add python-types-setuptools.
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* gnu/packages/python-xyz.scm (python-types-setuptools): New variable.
2023-05-10 19:27:07 +02:00
d32334eea2
gnu: Add python-mir-eval.
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* gnu/packages/python-xyz.scm (python-mir-eval): New variable.
2023-05-10 19:27:07 +02:00
e4480090e2
gnu: Add python-lightning-utilities.
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* gnu/packages/machine-learning.scm (python-lightning-utilities): New variable.
2023-05-10 19:27:07 +02:00
7afddfbfa0
gnu: Add python-lightning-cloud.
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* gnu/packages/machine-learning.scm (python-lightning-cloud): New variable.
2023-05-10 19:27:07 +02:00
b6b6e89419
gnu: python-pytorch-for-r-torch: Define as alias for python-pytorch.
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* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Remove
duplicate definition.
2023-05-10 19:27:07 +02:00
b60ea1cd17
gnu: python-traitlets: Update to 5.9.0.
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* gnu/packages/python-xyz.scm (python-traitlets): Update to 5.9.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling, python-pre-commit, and
python-pytest-mock.
[arguments]: Remove custom 'check phase.
2023-05-10 19:27:07 +02:00
e43ceae59f
gnu: Add python-deepdiff.
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* gnu/packages/python-xyz.scm (python-deepdiff): New variable.
2023-05-10 19:27:07 +02:00
e652b44725
gnu: python-pytorch: Update to 1.13.1.
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* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.13.1.
[source]: Update snippet.
2023-05-10 19:27:07 +02:00
e2eb43f945
gnu: python-shiboken-2: Add fix for python-pyside-2.
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* gnu/packages/qt.scm (python-shiboken-2)[arguments]: Add
'workaround-importlib-error' phase.
2023-05-10 18:00:37 +02:00
e0c35d1578
gnu: guile-fibers-next: Update to 1.2.0-2.745bd40.
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* gnu/packages/guile-xyz.scm (guile-fibers-next): Update to 1.2.0-2.745bd40.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-05-10 11:08:07 +01:00
5ff8ec12ef
gnu: guix-build-coordinator: Update to 0-81.3f6473c.
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* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-81.3f6473c.
2023-05-10 11:06:02 +01:00
5e1e674421
gnu: guile-gnutls: Update to 3.7.12.
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* gnu/packages/tls.scm (guile-gnutls): Update to 3.7.12.
[source]: Switch to a tarball, to avoid a circular dependency if guile-gnutls
is used in git-download.
[arguments]: Remove phase changes for building from Git.
[native-inputs]: Remove autoconf and automake as they're now unnecessary.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-05-10 10:41:03 +01:00
357e0b2690
gnu: cuirass: Update to 4a8a4bc.
...
Fixes <https://issues.guix.gnu.org/63389 >.
* gnu/packages/ci.scm (cuirass): Update to 4a8a4bc.
[arguments]: Remove 'set-PATH-for-tests' and 'disable-remote-tests'
phases, which are unnecessary. In 'wrap-program' phase, check for
"guile-gnutls".
[inputs]: Replace GUILE-FIBERS with GUILE-FIBERS-1.1 and GNUTLS with
GUILE-GNUTLS.
2023-05-10 00:23:53 +02:00
fbea62f829
gnu: emacs-gerbil-mode: Move to scheme.scm.
...
This fixes a bug due to a top-level circular reference:
$ guix show scheme48
[...]
ice-9/boot-9.scm:1685:16: In procedure raise-exception:
error: gerbil: unbound variable
* gnu/packages/emacs-xyz.scm (emacs-gerbil-mode): Move to...
* gnu/packages/scheme.scm (emacs-gerbil-mode): ... here.
2023-05-10 00:23:53 +02:00
7f89eee664
gnu: icecat: Update to 102.11.0-guix0-preview1 [security fixes].
...
Includes fixes for CVE-2023-32205, CVE-2023-32206, CVE-2023-32207,
CVE-2023-32211, CVE-2023-32212, CVE-2023-32213, CVE-2023-32214, and
CVE-2023-32215.
* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
2023-05-09 14:45:39 -04:00
5b58608f56
gnu: Add python-clinguin.
...
* gnu/packages/potassco.scm (python-clinguin): New variable.
2023-05-09 19:54:27 +02:00
a9bd722d67
gnu: python-fastapi: Do not delete tests, and add orjson.
...
* gnu/packages/python-web.scm (python-fastapi)[arguments]: Remove all custom
phases; ignore two test files.
[propagated-inputs]: Add python-orjson.
2023-05-09 19:54:27 +02:00
0f7d8a8305
gnu: Add python-fastapi.
...
* gnu/packages/python-web.scm (python-fastapi): New variable.
2023-05-09 19:43:44 +02:00
dd3ee6073e
gnu: python-databases: Revise description.
...
* gnu/packages/databases.scm (python-databases)[synopsis]: Spell out
“Asynchronous”.
[description]: Mention that it's a wrapper around other libraries using
SQLAlchemy.
2023-05-09 19:43:44 +02:00
8f01f084d3
gnu: python-databases: Update to 0.7.0.
...
* gnu/packages/databases.scm (python-databases): Update to 0.7.0.
2023-05-09 19:43:44 +02:00
966fd0bfdc
gnu: python-aiosqlite: Update to 0.18.0.
...
* gnu/packages/databases.scm (python-aiosqlite): Update to 0.18.0.
[source]: Use git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[arguments]: Adjust accordingly.
[propagated-inputs]: Remove.
[native-inputs]: Remove python-aiounittest.
Add python-flit-core, python-coverage and python-mypy.
2023-05-09 19:43:44 +02:00
3cc9e00473
gnu: python-aiomysql: Update to 0.1.1.
...
* gnu/packages/databases.scm (python-aiomysql): Update to 0.1.1.
[build-system]: Change to pyproject-build-system.
2023-05-09 19:43:43 +02:00
8d62db6b54
gnu: python-pymysql: Update to 1.0.2.
...
* gnu/packages/databases.scm (python-pymysql): Update to 1.0.2.
2023-05-09 19:43:43 +02:00
b09e87be26
gnu: python-sqlalchemy: Use pyproject-build-system.
...
* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Replace custom
'check phase with #:test-flags.
[build-system]: Use pyproject-build-system.
2023-05-09 19:43:43 +02:00
98e943435f
gnu: python-sqlalchemy: Update to 1.4.42.
...
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.42.
2023-05-09 19:20:18 +02:00
851199ef57
gnu: python-starlette: Update to 0.25.0.
...
* gnu/packages/python-web.scm (python-starlette): Update to 0.25.0.
[source]: Switch to git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling, python-httpx, python-pytest, and
python-typing-extensions-next.
2023-05-09 19:20:18 +02:00
3f00f46ada
Revert "gnu: rust-bootstrap: Remove aarch64 as a supported architecture."
...
This reverts commit c56d57110d
2023-05-09 16:54:29 +03:00
7e421c1f5a
gnu: r-scran: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1.
2023-05-09 15:24:15 +02:00
0880f325b7
gnu: r-scuttle: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1.
2023-05-09 15:24:15 +02:00
8c7ddd3a44
gnu: r-chromvar: Update to 1.22.1.
...
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1.
2023-05-09 15:24:15 +02:00
d850b72346
gnu: r-hdf5array: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1.
[propagated-inputs]: Add r-s4arrays.
2023-05-09 15:24:15 +02:00
3bdd6fb256
gnu: r-s4vectors: Update to 0.38.1.
...
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1.
2023-05-09 15:24:15 +02:00
da8638facb
gnu: r-preprocesscore: Update to 1.62.1.
...
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.1.
2023-05-09 15:24:15 +02:00
6b2a0aab19
gnu: r-iclusterplus: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.1.
2023-05-09 15:24:15 +02:00
c96ebf4cf9
gnu: r-clusterprofiler: Update to 4.8.1.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.1.
2023-05-09 15:24:15 +02:00
f7642f34d0
gnu: r-dose: Update to 3.26.1.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.1.
2023-05-09 15:24:15 +02:00
4228100215
gnu: r-linnorm: Update to 2.24.1.
...
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.1.
2023-05-09 15:24:15 +02:00
c6c69d4cc6
gnu: r-dnacopy: Update to 1.74.1.
...
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.1.
2023-05-09 15:24:15 +02:00
Ricardo Wurmus
Arjan Adriaanse
Efraim Flashner
Yovan Naumovski
宋文武
Bassam Saeed
André Batista
Ahmad Draidi
jgart
Tobias Kortkamp
Greg Hogan
Sharlatan Hellseher
Vinicius Monego
Leo Famulari
Christopher Baines
Liliana Marie Prikler
Michael Ford
Andy Tai
Arnaud Lechevallier
Antero Mejr
Ludovic Courtès
Guillaume Le Vaillant
David Thompson
Vagrant Cascadian
Artyom V. Poptsov
Lars-Dominik Braun
Mădălin Ionel Patrașcu
Pierre Neidhardt
Fabio Natali
Simon Tournier
Ivana Drazovic
zamfofex
Zhu Zihao
Lu Hui
kiasoc5
Janneke Nieuwenhuizen
Eric Bavier
Mark H Weaver