8a38b676da
gnu: r-iranges: Update to 2.22.2.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.22.2.
2020-06-13 01:19:40 +02:00
f189f536be
gnu: r-s4vectors: Update to 0.26.1.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.26.1.
2020-06-13 01:19:40 +02:00
1a9de6cfe8
gnu: r-bioccheck: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.24.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:40 +02:00
9f416be83d
gnu: r-biocstyle: Update to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:40 +02:00
1ca88fb8e9
gnu: r-biocviews: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.0.
2020-06-13 01:19:40 +02:00
5de96ae98b
gnu: r-grohmm: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.22.0.
2020-06-13 01:19:40 +02:00
bb18d11d85
gnu: r-systempiper: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.22.0.
[propagated-inputs]: Add r-assertthat, r-magrittr, r-rsvg, r-dot, and
r-stringr; remove r-biocgenerics.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:40 +02:00
681cca95b3
gnu: r-shortread: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.46.0.
2020-06-13 01:19:40 +02:00
3d2899dab5
gnu: r-gostats: Update to 2.54.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.54.0.
2020-06-13 01:19:40 +02:00
be414286bc
gnu: r-category: Update to 2.54.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.54.0.
2020-06-13 01:19:40 +02:00
a8613ff861
gnu: r-gseabase: Update to 1.50.1.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.50.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:40 +02:00
7d8b96e24b
gnu: r-rbgl: Update to 1.64.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.64.0.
2020-06-13 01:19:39 +02:00
397568dbca
gnu: r-annotationforge: Update to 1.30.1.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.30.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:39 +02:00
db5addba2c
gnu: r-dexseq: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.34.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:39 +02:00
3d7de4ed82
gnu: r-deseq2: Update to 1.28.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.28.1.
[propagated-inputs]: Remove r-hmisc.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:39 +02:00
5fdea056c9
gnu: r-genefilter: Update to 1.70.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.70.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:39 +02:00
c85e5ac0df
gnu: r-rgraphviz: Update to 2.32.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.32.0.
2020-06-13 01:19:39 +02:00
2226a2a8de
gnu: r-preprocesscore: Update to 1.50.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.50.0.
2020-06-13 01:19:39 +02:00
67a289e5bd
gnu: Add r-dot.
...
* gnu/packages/cran.scm (r-dot): New variable.
2020-06-13 01:19:39 +02:00
06ceac32e6
gnu: Add r-v8.
...
* gnu/packages/cran.scm (r-v8): New variable.
2020-06-13 01:19:39 +02:00
e6aacef67e
gnu: Add r-scatterpie.
...
* gnu/packages/cran.scm (r-scatterpie): New variable.
2020-06-13 01:19:39 +02:00
45f54b418b
gnu: Add r-gprofiler2.
...
* gnu/packages/cran.scm (r-gprofiler2): New variable.
2020-06-13 01:19:39 +02:00
f9311eaa7c
gnu: node: Build shared library.
...
* gnu/packages/node.scm (node)[arguments]: Build shared library.
2020-06-13 01:19:39 +02:00
a620d22ea8
gnu: r-gprofiler: Move to (gnu packages cran).
...
* gnu/packages/bioinformatics.scm (r-gprofiler): Move this variable from here...
* gnu/packages/cran.scm (r-gprofiler): ...to here.
2020-06-13 01:19:38 +02:00
29e4d3ea06
gnu: guile-sqlite3: Update to 0.1.1.
...
* gnu/packages/guile.scm (guile-sqlite3): Update to 0.1.1.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-06-12 18:56:11 +02:00
7def5056b6
gnu: Add liblogging.
...
* gnu/packages/c.scm (liblogging): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-12 18:56:11 +02:00
0aee6e51b4
gnu: Add libfastjson.
...
* gnu/packages/c.scm (libfastjson): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-12 18:56:10 +02:00
70a49ef76b
gnu: Add libestr.
...
* gnu/packages/c.scm (libestr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-12 18:56:10 +02:00
3bec7a356a
gnu: Add emacs-shell-pop.
...
* gnu/packages/emacs-xyz.scm (emacs-shell-pop): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-12 18:56:10 +02:00
9a01efa262
gnu: Fix apache mirror URIs.
...
* gnu/packages/web.scm (serf)[source]: Remove redundant part of URI.
* gnu/packages/java.scm (ant-bootstrap, java-commons-httpclient,
java-jakarta-oro)[source]: Same.
* gnu/packages/maven.scm (maven-shared-utils, maven-plugin-annotations,
maven-wagon-provider-api, maven-artifact)[source]: Same.
2020-06-12 18:23:27 +03:00
fd1e885236
system: image: Do not produce an HFS tree when building an ISO.
...
Use "mbr_only" mode to make sure that no HFS+ tree are generated.
* gnu/system/image.scm (system-image): Set MKRESCUE_SED_MODE to "mbr_only".
2020-06-12 17:21:18 +02:00
cd0f1fbd1a
gnu: xf86-input-libinput: Reduce closure size.
...
* gnu/packages/xorg.scm (xf86-input-libinput)[inputs]: Replace libinput by
libinput-minimal.
2020-06-12 09:00:45 +02:00
9c6ea3cb56
gnu: icecat: Fix WebGL support.
...
* gnu/packages/gnuzilla.scm (icecat): Wrap mesa.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-06-12 01:29:54 +02:00
8a02e45d93
shepherd: 'read-pid-file/container' terminates the whole process group.
...
This mirrors a change made in the Shepherd 0.8.0. Previously, upon
startup failure, we could have left processes behind.
* gnu/build/shepherd.scm (read-pid-file/container): Kill (- PID) instead
of PID.
2020-06-12 00:04:42 +02:00
b6b95685d0
shepherd: Unblock signals in the child process.
...
Fixes <https://bugs.gnu.org/41791 >.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.
This change mirrors changes made in the Shepherd 0.8.1, where signals
are blocked in the shepherd process in support of 'signalfd'. The
regression was introduced with the switch to 0.8.1 in
3f9c62d1a8b345909adaeb22f454ad22554c55a1: child processes would not
receive SIGTERM upon 'herd stop SERVICE'.
* gnu/build/shepherd.scm <top level>: Autoload (shepherd system).
(make-forkexec-constructor/container): Call call to 'sigaction' and
'unblock-signals'.
2020-06-12 00:04:42 +02:00
648ae62112
gnu: Add exercism and dependencies.
...
* gnu/packages/education.scm (exercism): New variable.
* gnu/packages/patches/exercism-disable-self-update.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/golang.scm (go-github-com-spf13-afero)
(go-github-com-spf13-cast)
(go-github-com-spf13-cobra)
(go-github-com-spf13-jwalterweatherman)
(go-github-com-spf13-viper)
(go-github-com-fsnotify-fsnotify)
(go-github-com-magiconair-properties)
(go-github-com-pelletier-go-toml)
(go-github-com-subosito-gotenv)
(go-gopkg-in-ini-v1)
(go-github-com-mitchellh-mapstructure): New variables.
2020-06-11 22:44:27 +02:00
437e64b7d3
gnu: linux-libre: Update to 5.4.46.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.46.
(linux-libre-5.4-pristine-source): Update hash.
2020-06-11 16:19:38 -04:00
48f3631b0f
gnu: linux-libre@5.7: Update to 5.7.2.
...
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128.
(linux-libre-5.7-pristine-source): Update hash.
2020-06-11 16:19:36 -04:00
1c02643a06
gnu: linux-libre@5.6: Remove.
...
Users of linux-libre-5.6 should migrate to version 5.7.
* gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version)
(linux-libre-5.6-pristine-source, linux-libre-5.6-source)
(linux-libre-headers-5.6, linux-libre-arm-generic-5.6)
(linux-libre-arm64-generic-5.6): Remove variables.
2020-06-11 16:19:34 -04:00
e37aff92e2
gnu: linux-libre@4.19: Update to 4.19.128.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128.
(linux-libre-4.19-pristine-source): Update hash.
2020-06-11 16:19:32 -04:00
e5630f5d3c
gnu: linux-libre@4.14: Update to 4.14.184.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184.
(linux-libre-4.14-pristine-source): Update hash.
2020-06-11 16:19:30 -04:00
523d63638a
gnu: linux-libre@4.9: Update to 4.9.227.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227.
(linux-libre-4.9-pristine-source): Update hash.
2020-06-11 16:19:27 -04:00
59feeb96e4
gnu: linux-libre@4.4: Update to 4.4.227.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227.
(linux-libre-4.4-pristine-source): Update hash.
2020-06-11 16:19:25 -04:00
e73a016df2
gnu: adns: Update to 1.6.0.
...
* gnu/packages/adns.scm (adns): Update to 1.6.0.
[source]: Use https.
[native-inputs]: Add m4.
2020-06-11 23:13:40 +03:00
4908ba058f
gnu: subversion: Update to 1.14.0.
...
* gnu/packages/version-control.scm (subversion): Update to 1.14.0.
[source]: Update source URI.
2020-06-11 22:41:02 +03:00
ecf92194a5
gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080].
...
* gnu/packages/web.scm (nghttp2-1.41): New variable.
(nghttp2)[replacement]: New field.
2020-06-11 19:05:05 +02:00
cbd9581acc
gnu: r-with-tests, r-minimal: Update to 4.0.1.
...
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1.
2020-06-11 17:03:48 +02:00
67ee20fbd2
gnu: r-brms: Update to 2.13.0.
...
* gnu/packages/cran.scm (r-brms): Update to 2.13.0.
2020-06-11 17:03:48 +02:00
20702ad9a3
gnu: r-crochet: Update to 2.3.0.
...
* gnu/packages/cran.scm (r-crochet): Update to 2.3.0.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:48 +02:00
e5884ce4c7
gnu: r-openmx: Update to 2.17.4.
...
* gnu/packages/cran.scm (r-openmx): Update to 2.17.4.
2020-06-11 17:03:48 +02:00
b34ba0649a
gnu: r-stanheaders: Update to 2.21.0-5.
...
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5.
[propagated-inputs]: Add r-rcppeigen and r-rcppparallel.
2020-06-11 17:03:48 +02:00
3a9a695255
gnu: r-semtools: Update to 0.5-3.
...
* gnu/packages/cran.scm (r-semtools): Update to 0.5-3.
2020-06-11 17:03:48 +02:00
bd76f9561d
gnu: r-sem: Update to 3.1-11.
...
* gnu/packages/cran.scm (r-sem): Update to 3.1-11.
2020-06-11 17:03:48 +02:00
db4d3b2581
gnu: r-emplik: Update to 1.1-1.
...
* gnu/packages/cran.scm (r-emplik): Update to 1.1-1.
2020-06-11 17:03:48 +02:00
de26ce7265
gnu: r-rsvg: Update to 2.1.
...
* gnu/packages/cran.scm (r-rsvg): Update to 2.1.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:48 +02:00
8ddf3be097
gnu: r-actuar: Update to 3.0-0.
...
* gnu/packages/cran.scm (r-actuar): Update to 3.0-0.
2020-06-11 17:03:48 +02:00
8050cce35d
gnu: r-gdina: Update to 2.8.0.
...
* gnu/packages/cran.scm (r-gdina): Update to 2.8.0.
2020-06-11 17:03:48 +02:00
242fae8edf
gnu: r-seewave: Update to 2.1.6.
...
* gnu/packages/cran.scm (r-seewave): Update to 2.1.6.
[inputs]: Add libsndfile.
2020-06-11 17:03:47 +02:00
30031516d1
gnu: r-elasticnet: Update to 1.3.
...
* gnu/packages/cran.scm (r-elasticnet): Update to 1.3.
2020-06-11 17:03:47 +02:00
bb714ae79f
gnu: r-showtext: Update to 0.8-1.
...
* gnu/packages/cran.scm (r-showtext): Update to 0.8-1.
2020-06-11 17:03:47 +02:00
8957a336f7
gnu: r-showtextdb: Update to 3.0.
...
* gnu/packages/cran.scm (r-showtextdb): Update to 3.0.
2020-06-11 17:03:47 +02:00
b99ed8e6e5
gnu: r-abcrlda: Update to 1.0.3.
...
* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3.
2020-06-11 17:03:47 +02:00
7262c1ff18
gnu: r-rgdal: Update to 1.5-10.
...
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:47 +02:00
dfd0b55f9e
gnu: r-parameters: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-parameters): Update to 0.8.0.
2020-06-11 17:03:47 +02:00
53bf76c574
gnu: r-systemfonts: Update to 0.2.3.
...
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3.
2020-06-11 17:03:47 +02:00
897ed4a76f
gnu: r-rhpcblasctl: Update to 0.20-137.
...
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137.
2020-06-11 17:03:47 +02:00
4c4c34a154
gnu: r-ggraph: Update to 2.0.3.
...
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3.
2020-06-11 17:03:47 +02:00
ed7fa0af07
gnu: r-europepmc: Update to 0.4.
...
* gnu/packages/cran.scm (r-europepmc): Update to 0.4.
[propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:47 +02:00
93043ba337
gnu: r-msigdbr: Update to 7.1.1.
...
* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:47 +02:00
a50246f455
gnu: r-bookdown: Update to 0.19.
...
* gnu/packages/cran.scm (r-bookdown): Update to 0.19.
2020-06-11 17:03:46 +02:00
5547b4360f
gnu: r-rms: Update to 6.0-0.
...
* gnu/packages/cran.scm (r-rms): Update to 6.0-0.
[propagated-inputs]: Add r-cluster, r-digest, and r-mass.
2020-06-11 17:03:46 +02:00
d263b2d67b
gnu: r-polspline: Update to 1.1.19.
...
* gnu/packages/cran.scm (r-polspline): Update to 1.1.19.
2020-06-11 17:03:46 +02:00
5130c454dd
gnu: r-lemon: Update to 0.4.5.
...
* gnu/packages/cran.scm (r-lemon): Update to 0.4.5.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:46 +02:00
2de55fbab9
gnu: r-picante: Update to 1.8.2.
...
* gnu/packages/cran.scm (r-picante): Update to 1.8.2.
2020-06-11 17:03:46 +02:00
e27fc23b07
gnu: r-lavaan: Update to 0.6-6.
...
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-6.
2020-06-11 17:03:46 +02:00
52d7306100
gnu: r-cmprsk: Update to 2.2-10.
...
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-10.
2020-06-11 17:03:46 +02:00
4c96ee1c40
gnu: r-gmp: Update to 0.6-0.
...
* gnu/packages/cran.scm (r-gmp): Update to 0.6-0.
2020-06-11 17:03:46 +02:00
d6df7299d3
gnu: r-bigrquery: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-bigrquery): Update to 1.3.1.
2020-06-11 17:03:46 +02:00
f71791c501
gnu: r-iso: Update to 0.0-18.1.
...
* gnu/packages/cran.scm (r-iso): Update to 0.0-18.1.
2020-06-11 17:03:46 +02:00
fc1db3fcf5
gnu: r-sjplot: Update to 2.8.4.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.4.
2020-06-11 17:03:46 +02:00
4a0fbb7799
gnu: r-effectsize: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.1.
2020-06-11 17:03:46 +02:00
9908ec56cd
gnu: r-bayesplot: Update to 1.7.2.
...
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.2.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:46 +02:00
a4a34d3ea8
gnu: r-emmeans: Update to 1.4.7.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.7.
2020-06-11 17:03:45 +02:00
0220c89e96
gnu: r-mosaicdata: Update to 0.18.0.
...
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.18.0.
2020-06-11 17:03:45 +02:00
4223df8af1
gnu: r-doby: Update to 4.6.6.
...
* gnu/packages/cran.scm (r-doby): Update to 4.6.6.
[propagated-inputs]: Remove r-dplyr and r-plyr.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:45 +02:00
400d0c96d0
gnu: r-flextable: Update to 0.5.10.
...
* gnu/packages/cran.scm (r-flextable): Update to 0.5.10.
[propagated-inputs]: Add r-uuid.
2020-06-11 17:03:45 +02:00
38ea73aaf2
gnu: r-sjmisc: Update to 2.8.5.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.5.
2020-06-11 17:03:45 +02:00
ffb5225fd1
gnu: r-sjlabelled: Update to 1.1.5.
...
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.5.
2020-06-11 17:03:45 +02:00
2ab00525df
gnu: r-insight: Update to 0.8.5.
...
* gnu/packages/cran.scm (r-insight): Update to 0.8.5.
2020-06-11 17:03:45 +02:00
ee19cc9a4b
gnu: r-overlap: Update to 0.3.3.
...
* gnu/packages/cran.scm (r-overlap): Update to 0.3.3.
2020-06-11 17:03:45 +02:00
79d23a02c6
gnu: r-officer: Update to 0.3.11.
...
* gnu/packages/cran.scm (r-officer): Update to 0.3.11.
2020-06-11 17:03:45 +02:00
ff7d4d56ed
gnu: r-ellipse: Update to 0.4.2.
...
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.2.
2020-06-11 17:03:45 +02:00
9a80792902
gnu: r-reticulate: Update to 1.16.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.16.
2020-06-11 17:03:45 +02:00
34a0a2412b
gnu: r-promises: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-promises): Update to 1.1.1.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:44 +02:00
f8e5a65a7f
gnu: r-later: Update to 1.1.0.1.
...
* gnu/packages/cran.scm (r-later): Update to 1.1.0.1.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:44 +02:00
7775f23453
gnu: r-maptools: Update to 1.0-1.
...
* gnu/packages/cran.scm (r-maptools): Update to 1.0-1.
2020-06-11 17:03:44 +02:00
734e29b59f
gnu: r-arules: Update to 1.6-6.
...
* gnu/packages/cran.scm (r-arules): Update to 1.6-6.
2020-06-11 17:03:44 +02:00
ad0f5067f1
gnu: r-tinytex: Update to 0.23.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.23.
2020-06-11 17:03:44 +02:00
ba12564e77
gnu: r-vctrs: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-vctrs): Update to 0.3.1.
2020-06-11 17:03:44 +02:00
9cd9132b10
gnu: r-xfun: Update to 0.14.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.14.
2020-06-11 17:03:44 +02:00
6446ef1ce4
gnu: r-mice: Update to 3.9.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.9.0.
2020-06-11 17:03:44 +02:00
ac04a9ec04
gnu: r-jomo: Update to 2.7-1.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.7-1.
2020-06-11 17:03:44 +02:00
b69ff7ac56
gnu: r-squarem: Update to 2020.3.
...
* gnu/packages/cran.scm (r-squarem): Update to 2020.3.
2020-06-11 17:03:44 +02:00
e88411168c
gnu: r-fitdistrplus: Update to 1.1-1.
...
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-1.
[propagated-inputs]: Remove r-npsurv.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:44 +02:00
6aa54116c6
gnu: r-sp: Update to 1.4-2.
...
* gnu/packages/cran.scm (r-sp): Update to 1.4-2.
2020-06-11 17:03:44 +02:00
ac5dbcfd49
gnu: r-ggally: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-ggally): Update to 2.0.0.
[propagated-inputs]: Add r-lifecycle and r-scales.
2020-06-11 17:03:43 +02:00
d828ed59a3
gnu: r-getoptlong: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-getoptlong): Update to 1.0.0.
[propagated-inputs]: Add r-crayon.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:43 +02:00
dcfdf2def6
gnu: r-globaloptions: Update to 0.1.2.
...
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.2.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:43 +02:00
9de5f92a10
gnu: r-pkgload: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-pkgload): Update to 1.1.0.
[propagated-inputs]: Add r-cli and r-crayon.
2020-06-11 17:03:43 +02:00
75766c8e78
gnu: r-glue: Update to 1.4.1.
...
* gnu/packages/cran.scm (r-glue): Update to 1.4.1.
2020-06-11 17:03:43 +02:00
e671034cf4
gnu: r-ape: Update to 5.4.
...
* gnu/packages/cran.scm (r-ape): Update to 5.4.
2020-06-11 17:03:43 +02:00
6b2126f332
gnu: r-haven: Update to 2.3.1.
...
* gnu/packages/cran.scm (r-haven): Update to 2.3.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-vctrs.
2020-06-11 17:03:43 +02:00
130134b6b5
gnu: r-d3r: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-d3r): Update to 0.9.0.
[propagated-inputs]: Add r-rlang.
2020-06-11 17:03:43 +02:00
1812ff93fc
gnu: r-servr: Update to 0.17.
...
* gnu/packages/cran.scm (r-servr): Update to 0.17.
2020-06-11 17:03:43 +02:00
340c40b701
gnu: r-httpuv: Update to 1.5.4.
...
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.4.
2020-06-11 17:03:43 +02:00
55d34bf216
gnu: r-modelr: Update to 0.1.8.
...
* gnu/packages/cran.scm (r-modelr): Update to 0.1.8.
[propagated-inputs]: Remove r-dplyr; add r-vctrs.
2020-06-11 17:03:43 +02:00
b0e813f65a
gnu: r-ellipsis: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.1.
2020-06-11 17:03:42 +02:00
280fbacf78
gnu: r-ggpmisc: Update to 0.3.5.
...
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.5.
[propagated-inputs]: Add r-magrittr, r-rlang, r-scales, and r-stringr.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:42 +02:00
249f082806
gnu: r-lubridate: Update to 1.7.9.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.9.
2020-06-11 17:03:42 +02:00
b5613d63a2
gnu: r-sn: Update to 1.6-2.
...
* gnu/packages/statistics.scm (r-sn): Update to 1.6-2.
2020-06-11 17:03:42 +02:00
bbf495d59f
gnu: r-mnormt: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-mnormt): Update to 2.0.0.
[propagated-inputs]: Add r-tmvnsim.
2020-06-11 17:03:42 +02:00
5c6e70346e
gnu: Add r-tmvnsim.
...
* gnu/packages/statistics.scm (r-tmvnsim): New variable.
2020-06-11 17:03:42 +02:00
8c9474ad6d
gnu: r-car: Update to 3.0-8.
...
* gnu/packages/statistics.scm (r-car): Update to 3.0-8.
2020-06-11 17:03:42 +02:00
51dd48b0bd
gnu: r-cardata: Update to 3.0-4.
...
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-4.
2020-06-11 17:03:42 +02:00
7518244343
gnu: r-tidyr: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.0.
2020-06-11 17:03:42 +02:00
f208a5ecc5
gnu: r-mvtnorm: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-1.
2020-06-11 17:03:42 +02:00
ba8ebc96c2
gnu: r-glmnet: Update to 4.0.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 4.0.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:42 +02:00
d41b944938
gnu: r-rmarkdown: Update to 2.2.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.2.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:42 +02:00
8637b77a9f
gnu: r-rcpparmadillo: Update to 0.9.900.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.1.0.
2020-06-11 17:03:41 +02:00
17788c8c2f
gnu: r-backports: Update to 1.1.7.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.7.
2020-06-11 17:03:41 +02:00
91428c3611
gnu: r-dbplyr: Update to 1.4.4.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.4.
[propagated-inputs]: Add r-blob and r-magrittr.
2020-06-11 17:03:41 +02:00
b2c2982755
gnu: r-dplyr: Update to 1.0.0.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.0.
[propagated-inputs]: Remove r-assertthat, r-bh, r-pkgconfig, r-plogr, and
r-rcpp; add r-generics, r-lifecycle, and r-vctrs.
2020-06-11 17:03:41 +02:00
015a7455a8
gnu: r-ggplot2: Update to 3.3.1.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.1.
[native-inputs]: Add r-knitr.
2020-06-11 17:03:41 +02:00
06dfe35322
gnu: r-nlme: Update to 3.1-148.
...
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-148.
2020-06-11 17:03:41 +02:00
0b684d087d
gnu: r-foreign: Update to 0.8-80.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-80.
2020-06-11 17:03:41 +02:00
82b9ed4eae
gnu: php: Update to 7.4.7.
...
* gnu/packages/php.scm (php): Update to 7.4.7.
2020-06-11 15:45:05 +02:00
f65adfa445
gnu: sameboy: Update to 0.13.2.
...
* gnu/packages/emulators.scm (sameboy): Update to 0.13.2.
[arguments]: Specify NATIVE_CC to avoid requiring the `cc' program.
2020-06-11 14:08:07 +02:00
bb0d840b7d
gnu: java-jakarta-oro: Use a mirror URL.
...
* gnu/packages/java.scm (java-jakarta-oro)[source]: Download using an
apache mirror:// URL.
2020-06-11 11:54:31 +03:00
894d6a085d
gnu: java-commons-httpclient: Use a mirror URL.
...
* gnu/packages/java.scm (java-commons-httpclient)[source]: Use an apache
mirror:// URL.
2020-06-11 11:53:39 +03:00
f4bb881abd
gnu: ant-bootstrap: Use a mirror URL.
...
* gnu/packages/java.scm (ant-bootstrap)[source]: Use an apache mirror://
URL.
2020-06-11 11:52:18 +03:00
21d3307875
gnu: maven-artifact: Use a mirror URL.
...
* gnu/packages/maven.scm (maven-artifact)[source]: Use an apache
mirror:// URL.
2020-06-11 11:50:29 +03:00
67b1257775
gnu: maven-wagon-provider-api: Use a mirror URL.
...
* gnu/packages/maven.scm (maven-wagon-provider-api)[source]: Use an
apache mirror:// URL.
2020-06-11 11:49:41 +03:00
623aa56402
gnu: maven-plugin-annotations: Use a mirror URL.
...
* gnu/packages/maven.scm (maven-plugin-annotations)[source]: Use an
apache mirror:// URL.
2020-06-11 11:48:58 +03:00
a00687427d
gnu: maven-shared-utils: Use a mirror URL.
...
* gnu/packages/maven.scm (maven-shared-utils)[source]: Use an apache
mirror:// URL.
2020-06-11 11:48:08 +03:00
1c32eb95af
gnu: serf: Use a mirror URL.
...
* gnu/packages/web.scm (serf)[source]: Use an apache mirror:// URL.
2020-06-11 11:46:51 +03:00
3d79fd59fe
gnu: subversion: Use a mirror URL.
...
* gnu/packages/version-control.scm (subversion)[source]: Use an apache
mirror:// URL.
2020-06-11 11:34:59 +03:00
e192b9e02d
gnu: lyx: Use qt-build-system.
...
* gnu/packages/tex.scm (lyx)[build-system]: Switch to qt-build-system.
[arguments]: Remove imported modules. Remove custom 'wrap-qt phase.
2020-06-11 09:56:30 +03:00
dadf97952d
gnu: lyx: Don't install to custom directory.
...
* gnu/packages/tex.scm (lyx)[arguments]: Adjust configure-flags to not
add the version to the binary's suffix. Remove custom
'patch-desktop-file, 'setenv-check and 'install-symlink phases.
2020-06-11 09:56:30 +03:00
03a7b67b31
gnu: lyx: Update to 2.3.5.1.
...
* gnu/packages/tex.scm (lyx): Update to 2.3.5.1.
[arguments]: Remove 'fix-compilation-with-boost-1.69 phase. In
'patch-python phase patch more files, substitute with python3. Split
'setenv-check and create empty file after 'unpack.
2020-06-11 09:56:30 +03:00
7a7a29445c
gnu: lyx: Wrap binary.
...
Fixes <https://bugs.gnu.org/37147 >.
* gnu/packages/tex.scm (lyx)[arguments]: Import qt-utils. Add phase to
wrap the lyx2.3 binary.
2020-06-11 09:56:15 +03:00
a4620c019b
gnu: fet: Update to 5.45.0.
...
* gnu/packages/education.scm (fet): Update to 5.45.0.
2020-06-10 22:17:11 +02:00
4ee117d56b
gnu: scintilla: Update to 4.4.3.
...
* gnu/packages/text-editors.scm (scintilla): Update to 4.4.3.
2020-06-10 21:57:40 +02:00
a8c8b89048
gnu: thinkfan: Update to 1.2.
...
* gnu/packages/linux.scm (thinkfan): Update to 1.2.
[home-page]: Switch to an up-to-date home page.
2020-06-10 21:53:48 +02:00
c90730aefe
gnu: progress: Update to 0.15.
...
* gnu/packages/admin.scm (progress): Update to 0.15.
2020-06-10 20:36:37 +02:00
a474999c26
gnu: man-pages: Update to 5.07.
...
* gnu/packages/man.scm (man-pages): Update to 5.07.
2020-06-10 20:33:33 +02:00
58cb52a31d
gnu: ipopt: Fix source URI.
...
* gnu/packages/maths.scm (ipopt)[source]: Fix URI.
2020-06-10 17:34:41 +02:00
127c7fba1a
gnu: grfcodec: Fix source URL.
...
* gnu/packages/game-development.scm (grfcodec)[source]: Use HTTPS for URL.
Re-indent package.
2020-06-10 17:33:58 +02:00
c0f297e85f
gnu: cuirass: Update to 0.0.1-2280ae18.
...
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-2280ae18.
2020-06-10 17:32:12 +02:00
d5fd9c7223
gnu: ipopt: Use HTTPS home page URI.
...
* gnu/packages/maths.scm (ipopt)[home-page]: Use HTTPS URI.
2020-06-10 17:27:41 +02:00
0661638f5e
gnu: grfcodec: Use HTTPS home page URI.
...
* gnu/packages/game-development.scm (grfcodec)[home-page]: Use HTTPS URI.
2020-06-10 17:26:07 +02:00
bf8e10051b
gnu: fsarchiver: Use HTTPS home page URI.
...
* gnu/packages/file-systems.scm (fsarchiver)[home-page]: Use HTTPS URI.
2020-06-10 17:25:17 +02:00
42d1159335
gnu: asciidoc: Use HTTPS home page URI.
...
* gnu/packages/documentation.scm (asciidoc)[home-page]: Use HTTPS URI.
2020-06-10 17:19:02 +02:00
b26ad6dbe2
gnu: grammalecte: Update to 1.10.0.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.10.0.
2020-06-10 17:04:25 +02:00
73d9caba79
gnu: qtpass: Wrap binary.
...
* gnu/packages/password-utils.scm (qtpass)[arguments]: Import qt-utils
modules. Add phase to wrap qtpass binary.
2020-06-10 16:21:18 +03:00
e1e9baf22f
gnu: qtpass: Update to 1.3.2.
...
* gnu/packages/password-utils.scm (qtpass): Update to 1.3.2.
2020-06-10 16:19:57 +03:00
88e1d36ba6
gnu: mu: Update to 1.4.10.
...
* gnu/packages/mail.scm (mu): Update to 1.4.10.
2020-06-10 05:15:52 +02:00
d87c9fc506
gnu: herbstluftwm: Update to 0.8.3.
...
* gnu/packages/wm.scm (herbstluftwm): Update to 0.8.3.
2020-06-10 05:09:29 +02:00
75d493aea1
gnu: ethtool: Update to 5.7.
...
* gnu/packages/networking.scm (ethtool): Update to 5.7.
2020-06-10 05:09:29 +02:00
01979fafb3
gnu: haproxy: Update to 2.1.6.
...
* gnu/packages/networking.scm (haproxy): Update to 2.1.6.
2020-06-10 05:09:29 +02:00
d2a7cb46a6
gnu: dlib: Update to 19.20.
...
* gnu/packages/machine-learning.scm (dlib): Update to 19.20.
2020-06-10 04:37:24 +02:00
f6b8b1817e
gnu: pd: Update to 0.51-0.
...
* gnu/packages/music.scm (pd): Update to 0.51-0.
2020-06-10 04:37:24 +02:00
8c5b29c796
gnu: pd: Use HTTPS home page.
...
* gnu/packages/music.scm (pd)[home-page]: Use HTTPS.
2020-06-10 04:37:24 +02:00
98f08a99c6
gnu: pd: Don't hard-code Tk version.
...
* gnu/packages/music.scm (pd)[arguments]: Construct the wish file name from the tk package version.
2020-06-10 04:37:24 +02:00
7801e9f2d4
gnu: libnumbertext: Update to 1.0.6.
...
* gnu/packages/libreoffice.scm (libnumbertext): Update to 1.0.6.
2020-06-10 04:37:24 +02:00
56e1cc0c34
gnu: msmtp: Update to 1.8.11.
...
* gnu/packages/mail.scm (msmtp): Update to 1.8.11.
2020-06-10 04:37:24 +02:00
bfdce9ffda
gnu: mpop: Update to 1.4.10.
...
* gnu/packages/mail.scm (mpop): Update to 1.4.10.
2020-06-10 04:37:23 +02:00
5bc22ba81e
gnu: nvme-cli: Update to 1.11.2.
...
* gnu/packages/linux.scm (nvme-cli): Update to 1.11.2.
2020-06-10 04:37:23 +02:00
0cafb90d15
gnu: iptables: Update to 1.8.5.
...
* gnu/packages/linux.scm (iptables): Update to 1.8.5.
[source]: Add URL.
[arguments]: Add an ‘install-missing-script’ phase.
2020-06-10 04:37:23 +02:00
2d63cca146
gnu: nftables: Update to 0.9.5.
...
* gnu/packages/linux.scm (nftables): Update to 0.9.5.
2020-06-10 04:37:23 +02:00
67e890ec18
gnu: libnftnl: Update to 1.1.7.
...
* gnu/packages/linux.scm (libnftnl): Update to 1.1.7.
2020-06-10 04:37:23 +02:00
088e186b35
gnu: gtkspell3: Update to 3.0.10.
...
* gnu/packages/gtk.scm (gtkspell3): Update to 3.0.10.
[propagated-inputs]: Replace enchant-1.6 with default version 2.
2020-06-10 04:37:23 +02:00
ed4447236d
gnu: smb4k: Update to 3.0.6.
...
* gnu/packages/kde-utils.scm (smb4k): Update to 3.0.6.
2020-06-10 04:37:23 +02:00
553f2f3f54
gnu: mm-common: Update to 1.0.1.
...
* gnu/packages/gnome.scm (mm-common): Update to 1.0.1.
2020-06-10 04:37:23 +02:00
02cb4ca757
gnu: mm-common: Don't use NAME in source URI.
...
* gnu/packages/gnome.scm (mm-common)[source]: Hard-code NAME.
2020-06-10 04:37:22 +02:00
3f352df035
gnu: simple-scan: Update to 3.36.3.
...
* gnu/packages/gnome.scm (simple-scan): Update to 3.36.3.
2020-06-10 04:37:22 +02:00
e6c2a88f3d
gnu: djview: Update to 4.11.
...
* gnu/packages/djvu.scm (djview): Update to 4.11.
[source]: Use GIT-FETCH and add a FILE-NAME.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Add a ‘make-files-writable’ phase.
2020-06-10 04:37:22 +02:00
2971ed5734
gnu: dhall: Update to 1.32.0.
...
* gnu/packages/dhall.scm (dhall): Update to 1.32.0.
[inputs]: Add ghc-half.
2020-06-09 23:52:20 +02:00
5e7daec9b4
gnu: dhall: Disable network tests differently.
...
* gnu/packages/dhall.scm (dhall)[source]: Remove patch.
[arguments]: Rename ‘remove-more-tests’ phase to ‘remove-network-tests’.
Identify the tests by name instead of by content.
* gnu/packages/patches/dhall-remove-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-06-09 23:52:19 +02:00
3a629d36e9
gnu: rocksdb: Update to 6.10.1.
...
* gnu/packages/databases.scm (rocksdb): Update to 6.10.1.
2020-06-09 23:52:19 +02:00
7a358c7886
gnu: perl-sql-abstract: Update to 1.87.
...
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.87.
2020-06-09 23:52:19 +02:00
d2d7be35fe
gnu: rust-yaml-rust: Update to 0.4.4.
...
* gnu/packages/crates-io.scm (rust-yaml-rust): Update to 0.4.4.
[arguments]: Update rust-quickcheck to 0.9.
2020-06-09 23:52:19 +02:00
840857bf48
gnu: minisign: Update to 0.9.
...
* gnu/packages/crypto.scm (minisign): Update to 0.9.
2020-06-09 23:52:19 +02:00
96484ab9f7
gnu: python-pylint: Update to 2.5.3.
...
* gnu/packages/check.scm (python-pylint): Update to 2.5.3.
2020-06-09 23:52:19 +02:00
9bb102dc1c
gnu: stumpish: Remove bogus keyword.
...
This follows up on commit 81b045e149
2020-06-09 23:33:27 +02:00
583fcb27ae
gnu: thunar: Update to 1.8.15.
...
* gnu/packages/xfce.scm (thunar): Update to 1.8.15.
2020-06-09 22:30:09 +02:00
3320966068
gnu: singular: Update to 4.1.3p2.
...
* gnu/packages/algebra.scm (singular): Update to 4.1.3p2.
2020-06-09 22:30:09 +02:00
14adb59ab0
gnu: borg: Update to 1.1.13.
...
* gnu/packages/backup.scm (borg): Update to 1.1.13.
[arguments]: Skip a new FUSE test.
2020-06-09 22:30:08 +02:00
b70e612b9a
gnu: Add sbcl-stumpwm-kbd-layouts.
...
* gnu/packages/wm.scm (sbcl-stumpwm-kbd-layouts): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-06-09 22:07:53 +03:00
1afe58e47f
gnu: Add sbcl-stumpwm-stumptray.
...
* gnu/packages/wm.scm (sbcl-stumpwm-stumptray): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-06-09 22:07:53 +03:00
86ee8d15aa
gnu: Add sbcl-stumpwm-wifi.
...
* gnu/packages/wm.scm (sbcl-stumpwm-wifi): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-06-09 22:07:53 +03:00
ea94e4d38e
gnu: Add sbcl-stumpwm-net.
...
* gnu/packages/wm.scm (sbcl-stumpwm-net): New variable.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-06-09 22:07:53 +03:00
81b045e149
gnu: stumpwm: Update contrib module package names.
...
This also causes the contribution modules to inherit from a common base.
* gnu/packages/wm.scm (stumpish, sbcl-stumpwm-ttf-fonts, sbcl-stumpwm-pass,
sbcl-stumpwm-globalwindows, sbcl-stumpwm-swm-gaps): Bring package name in line
with the Guix symbol name.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-06-09 22:07:52 +03:00
152d50d903
gnu: Add sbcl-clx-xembed.
...
* gnu/packages/lisp-xyz.scm (sbcl-clx-xembed, cl-clx-xembed, ecl-clx-xembed):
New variables.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-06-09 22:07:52 +03:00
c178d5fa5a
gnu: Remove ganv-devel.
...
* gnu/packages/gtk.scm (ganv-devel): Remove variable.
* gnu/packages/music.scm (ingen)[inputs]: Change from GANV-DEVEL to GANV.
2020-06-09 20:45:33 +02:00
d32a3b395c
gnu: x265: Disable assembly optimizations on i686-linux.
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Fixes <https://bugs.gnu.org/41768 >.
* gnu/packages/video.scm (x265)[native-inputs]: Conditionally add NASM.
2020-06-09 20:43:36 +02:00
3cf7088fc6
gnu: Add java-pep-adapter.
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* gnu/packages/pep.scm (java-pep-adapter): New variable.
2020-06-09 20:01:09 +02:00
9b72216630
gnu: Add python-pep-adapter.
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* gnu/packages/pep.scm (python-pep-adapter): New variable.
2020-06-09 20:01:09 +02:00
cfd15d96e6
gnu: Add libpepadapter.
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* gnu/packages/pep.scm (libpepadapter): New variable.
2020-06-09 20:01:08 +02:00
221c514451
gnu: Add pep-engine.
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* gnu/packages/pep.scm (fdik-libetpan, sequoia4pEp, pep-engine): New
variables.
2020-06-09 20:01:08 +02:00
d7a341f8e1
gnu: Add yml2.
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* gnu/packages/pep.scm: New file.
* gnu/locak.mk (GNU_SYSTEM_MODULES): Add it.
2020-06-09 20:01:08 +02:00
80352a2f68
bootloader: grub: Fix cross-compilation.
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This is a follow-up of 536c53d347
2020-06-09 18:49:36 +02:00
5681ce5074
services: etc: Add '/etc/ttys' symlink for the Hurd.
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Reported by Vitaliy Shatrov <D0dyBo0D0dyBo0@protonmail.com> via IRC.
* gnu/system.scm (operating-system-etc-service): For the Hurd, add '/etc/ttys'
symlink. This fixes terminal behavior in the console by setting TERM=hurd.
2020-06-09 17:59:56 +02:00
9392652e91
installer: final: Dump "guix system init" command output when testing.
...
When debugging the installation tests, it can be very handy to be able to read
"guix system init" command output.
* gnu/installer/final.scm (install-system): Dump installation command output
to the console when running the installation tests.
2020-06-09 17:59:05 +02:00
ce16b07d10
installer: final: Remove left-over pk call.
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* gnu/installer/final.scm (kill-cow-users): Remove pk call.
2020-06-09 17:59:05 +02:00
5648ce07ff
gnu: guix: Update to 141b5c1620.
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* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.141b5c1620.
2020-06-09 17:42:23 +02:00
536c53d347
gnu: grub: Support graphical gfxterm on all systems.
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* gnu/bootloaders/grub.scm (eye-candy): Use gfxterm depending only on
(bootloader-configuration (terminal-outputs …)), which defaults to '(gfxterm).
This makes the system argument obsolete.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-06-09 17:18:21 +02:00
141b5c1620
gnu: emacs-helm: Update to 3.6.2.
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* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.6.2.
2020-06-09 10:45:11 +02:00
a50628bbe0
gnu: apache-arrow: Update to 0.17.1.
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* gnu/packages/databases.scm (apache-arrow): Update to 0.17.1.
* gnu/packages/databases.scm (python-pyarrow): Update to 0.17.1.
* gnu/packages/serialization.scm (python-feather-format): Update to 0.4.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-09 10:43:54 +02:00
fbc1cbb527
gnu: Add apache-thrift.
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* gnu/packages/rpc.scm (apache-thrift): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-09 10:43:54 +02:00
dacd126640
gnu: icedove: Update to 68.9.0.
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* gnu/packages/gnuzilla.scm (%icedove-build-id): Update.
(icedove): Update version and corresponding hg changeset.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-09 10:43:54 +02:00
ea80cdbcea
activation: Fix function call for system activation
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* gnu/build/activation.scm (boot-time-system):
Evaluate the linux-command-line thunk for linux systems to boot
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-09 10:43:54 +02:00
5f7c4416b5
Revert "installer: utils: Dump command output to syslog when testing."
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This reverts commit f73ed55791
2020-06-09 10:33:04 +02:00
f73ed55791
installer: utils: Dump command output to syslog when testing.
...
When debugging the installation tests, it can be very handy to be able to read
"run-command" output, for instance when executing "guix system init".
Introduce a new "invoke-with-log" procedure that is able to log a command
standard and error outputs to the syslog. Use it, only when running the
installation tests, to dump "run-command" output.
* gnu/installer/utils.scm (open-pipe-with-stderr, invoke-with-log): New
procedures,
(invoke-log-port): new variable,
(run-command): move to the end of the file and use invoke-with-log when
running the installation tests.
2020-06-09 10:32:19 +02:00
8423c2d309
build: image: Do not call make-essential-device-nodes by default.
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Calling "mknod" without root permissions fails. Plus those device nodes do not
appear to be needed to boot.
* gnu/build/image.scm (initialize-root-partition): Do not use
make-essential-device-nodes as default make-device-nodes procedure.
2020-06-09 10:32:19 +02:00
23567138f8
system: vm: Add missing imported module.
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* gnu/system/vm.scm (qemu-image): Import missing (gnu build hurd-boot) module.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2020-06-09 01:31:16 -04:00
535a6be2e5
system: Fix typo that breaks grub.cfg generation.
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* gnu/system.scm (boot-parameters->menu-entry): Delete quote to evalutate and
get kernel boot parameters.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2020-06-09 01:28:18 -04:00
9084fc2e90
gnu: znc: Update to 1.8.1.
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* gnu/packages/messaging.scm (znc): Update to 1.8.1.
2020-06-08 23:03:08 +02:00
c34a7dc2bb
gnu: v4l2loopback-linux-module: Really disable tests.
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Commit fdcd193744
2020-06-08 23:01:54 +02:00
076779c4d4
gnu: Add linux-libre-arm-generic-5.7.
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* gnu/packages/linux (linux-libre-arm-generic): New variable.
2020-06-08 13:05:51 -07:00
637b64ce7c
gnu: Add linux-libre-arm64-generic-5.7.
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* gnu/packages/linux (linux-libre-arm64-generic): New variable.
2020-06-08 13:05:48 -07:00
21569e53b2
gnu: Add linux-libre 5.7.1.
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* gnu/packages/linux (deblob-scripts-5.7): New variable.
(linux-libre-5.7-version): New variable.
(linux-libre-5.7-pristine-source): New variable.
(linux-libre-5.7-source): New variable.
(linux-libre-headers-5.7): New variable.
2020-06-08 13:05:44 -07:00
838c4b10e9
gnu: opensmtpd: Patch bug in 'smtpctl encrypt'.
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* gnu/packages/mail.scm (opensmtpd)[phases]{fix-smtpctl-encrypt-bug}: New
phase.
2020-06-08 15:43:07 -04:00
933abfba36
gnu: Blender: Update to 2.83.0.
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* gnu/packages/graphics.scm (blender): Update to 2.83.0.
2020-06-08 14:32:50 -04:00
1fd2c00efb
gnu: font-liberation: Update to 2.1.1.
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* gnu/packages/fonts.scm (font-liberation): Update to 2.1.1.
2020-06-08 19:01:41 +02:00
087e760e29
gnu: Add python-mechanize.
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* gnu/packages/python-xyz.scm (python2-mechanize): Rename to ...
(python-mechanize): ... this. Update to 0.4.5.
[arguments]: Remove.
[propagated-inputs]: Add PYTHON-HTML5LIB.
[home-page]: Update to current.
[license]: Set to LICENSE:BSD-3.
(python2-mechanize): Define in terms of PACKAGE-WITH-PYTHON2.
2020-06-08 19:01:41 +02:00
183858d938
gnu: python-regex: Update to 2020.6.8.
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* gnu/packages/python-xyz.scm (python-regex): Update to 2020.6.8.
[arguments]: New field.
2020-06-08 19:01:41 +02:00
a8a7a2c797
gnu: python-netifaces: Update to 0.10.9.
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* gnu/packages/python-xyz.scm (python-netifaces): Update to 0.10.9.
2020-06-08 19:01:40 +02:00
59e646ab4e
gnu: python-cssselect: Update to 1.1.0.
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* gnu/packages/python-web.scm (python-cssselect): Update to 1.1.0.
[source]: Change to GIT-FETCH.
[arguments]: Remove #:tests?. Add #:phases.
[native-inputs]: Add PYTHON-LXML and PYTHON-PYTEST.
[home-page]: Update to current.
2020-06-08 19:01:40 +02:00
b470122f67
gnu: python-odfpy: Update to 1.4.1.
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* gnu/packages/python-xyz.scm (python-odfpy): Update to 1.4.1.
[arguments]: Remove #:modules. Rewrite test phase to use pytest.
[native-inputs]: Add PYTHON-PYTEST.
[propagated-inputs]: Add PYTHON-DEFUSEDXML.
2020-06-08 19:01:40 +02:00
4a6974667e
gnu: openssh: Remove exception to build without xauth for the Hurd.
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* gnu/packages/ssh.scm (openssh)[inputs]: Unconditionally include xauth;
for the Hurd: use openssh-sans-x for now.
2020-06-08 16:50:40 +02:00
8176ce6fde
gnu: guix: Update to ab9e30039d.
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* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.ab9e30039d.
2020-06-08 16:50:09 +02:00
835b3d893f
gnu: guix: Update to 68d8c09465.
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* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.68d8c09465.
2020-06-08 14:45:40 +02:00
68d8c09465
gnu: services: Add %hurd-startup-service.
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This decouples startup of the Hurd from the "hurd" package, moving the RC
script into SYSTEM.
* gnu/packages/hurd.scm (hurd)[inputs]: Remove hurd-rc-script.
[arguments]: Do not substitute it. Update "runsystem.sh" to parse kernel
arguments and exec into --system=SYSTEM/rc.
(hurd-rc-script): Move to...
* gnu/services.scm (%hurd-rc-file): ...this new variable.
(hurd-rc-entry): New procedure.
(%hurd-startup-service): Use it in new variable.
* gnu/system.scm (hurd-default-essential-services): Use it.
2020-06-08 14:26:14 +02:00
b37c544196
hurd-boot: Further cleanup of "rc".
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* gnu/packages/hurd.scm (hurd-rc-script): Move implementation to ...
* gnu/build/hurd-boot.scm (boot-hurd-system): ...here, new file.
* gnu/build/linux-boot.scm (make-hurd-device-nodes): Move there likewise.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2020-06-08 14:26:14 +02:00
11e4200fee
system: hurd: Populate services.
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* gnu/system/hurd.scm (%base-services/hurd): Add hurd-console-service,
hurd-getty-services, guix-service. Also add sylog and loopback, needed for
...
* gnu/system.scm (hurd-default-essential-services): ... add
%shepherd-root-service with dependencies: %boot-service, %activation-service,
user-processes, root-file-system-service, file-system-service,
pam-root-service.
2020-06-08 14:26:14 +02:00
7ccd471c71
services: Add `hurd-getty-service-type'.
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* gnu/services/hurd.scm (<hurd-gettty-configuration>): New record.
(hurd-ttys-shepherd-service): New procedure.
(hurd-getty-service-type): New variable.
* doc/guix.texi (Hurd Services): Document it.
2020-06-08 14:26:14 +02:00
f9c04580bf
services: Add `hurd-console-service-type'.
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* gnu/services/hurd.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Hurd Services): Document it.
2020-06-08 14:26:14 +02:00
97c94fc2c2
gnu: hurd: Create minimal "runsystem" script to invoke "rc".
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This moves towards a regular Guix startup, loading SYSTEM/boot to activate the
system and start the shepherd.
* gnu/packages/hurd.scm (hurd-rc-script): Update to handle "runsystem" tasks.
Load system/boot to activate the system and start the shepherd. Create /hurd
symlink.
(hurd)[arguments]: Add 'create-runsystem' phase. Do not substitute now unused
init.c, runsystem.hurd. Substitute "/hurd/" for the fixed 'out + "/hurd/"' in
boot.c, console-run.c and startup.c. Also substitute
_HURD_STARTUP ("/hurd/startup") to the fixed 'out + "/hurd/startup"' in
libdiskfs/boot-start.c and libdiskfs/opts-std-startup.c.
2020-06-08 14:26:14 +02:00
c03e513a41
services: hurd: Populate system profile.
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* gnu/system.scm (hurd-default-essential-services): Populate profile with
packages.
2020-06-08 14:26:13 +02:00
f5ca79d2a2
services: Support etc-service for the Hurd.
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* gnu/system.scm (operating-system-etc-service): Cater for missing nsswitch
and missing sudoers-file. For the Hurd, add "login" and "motd".
(hurd-default-essential-services): Add operating-system-etc-service.
2020-06-08 14:12:29 +02:00
Ricardo Wurmus
Ludovic Courtès
Katherine Cox-Buday
Ryan Desfosses
Efraim Flashner
Mathieu Othacehe
Pierre Neidhardt
Ekaitz Zarraga
Jakub Kądziołka
Mark H Weaver
Julien Lepiller
Nicolas Goaziou
Tobias Geerinckx-Rice
Marius Bakke
Hartmut Goebel
Jan (janneke) Nieuwenhuizen
Stefan
Jonathan Brielmaier
Royce Strange
Vagrant Cascadian
Maxim Cournoyer
Leo Famulari