d140d8a1c9
gnu: r-bluster: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-bluster): Update to 1.14.0.
Change-Id: I1648c28f20ff3649face1ac35ad76301591c5989
2024-05-08 12:53:21 +02:00
6b72971be3
gnu: r-dyndoc: Update to 1.82.0.
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* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.82.0.
Change-Id: Ib44ec47e918a680d271e8c8ea81db745f1f06325
2024-05-08 12:53:20 +02:00
657c030a57
gnu: r-dss: Update to 2.52.0.
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* gnu/packages/bioconductor.scm (r-dss): Update to 2.52.0.
Change-Id: I8c0e6f9d232d74037efc76db8e11cc6ae1035d63
2024-05-08 12:53:20 +02:00
071eedcbc1
gnu: r-dropletutils: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.24.0.
Change-Id: I95b2770d95b73ca6aee987b4dadaf9d125bf5ba8
2024-05-08 12:53:20 +02:00
fa46220283
gnu: r-drimseq: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.32.0.
Change-Id: Iff51e039659421421e54bf47765fb6e0d5ae8508
2024-05-08 12:53:20 +02:00
a841f1f692
gnu: r-dmrcate: Update to 3.0.0.
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* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.0.
[propagated-inputs]: Add r-annotationhub.
Change-Id: I1b91adbb7d766d3301d2cd03b933c57fe755dd8a
2024-05-08 12:53:20 +02:00
7f4e7bff48
gnu: r-derfinderhelper: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.38.0.
Change-Id: Iefab596f9f9d795d0fbcb85c2e01cea0f0263877
2024-05-08 12:53:20 +02:00
d9002c14f9
gnu: r-derfinder: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.38.0.
Change-Id: I4f73fe46311540dd31e3eb9d58114a555cada8ce
2024-05-08 12:53:20 +02:00
4b2e1b69cd
gnu: r-densvis: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-densvis): Update to 1.14.0.
Change-Id: I7d8d13236a8e2a87dd6ab1cb6fac7277c615c170
2024-05-08 12:53:20 +02:00
5c93327cd9
gnu: r-delayedarray: Update to 0.30.0.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.0.
Change-Id: I2b823b0f6da15420f9f208932e2306cde7c6de0e
2024-05-08 12:53:20 +02:00
fbfb298d0e
gnu: r-degreport: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-degreport): Update to 1.40.0.
Change-Id: I481637b9d661addbf2bc3ebaf1d396fc0087561e
2024-05-08 12:53:20 +02:00
622dc493e7
gnu: r-deepsnv: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.50.0.
Change-Id: Idb65967f3c76960b1db761c662adda3c84586abd
2024-05-08 12:53:20 +02:00
8e5486f5bd
gnu: r-decoupler: Update to 2.9.7.
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* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.9.7.
[propagated-inputs]: Add r-biocparallel and r-parallelly.
Change-Id: I8218c03aa7cfea84b9df58ff17500f9d3a6ecac5
2024-05-08 12:53:20 +02:00
12f94fb1ae
gnu: r-deconvr: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.10.0.
Change-Id: Ia56bc18028860d0aaeb78d479d5b7b162b5908b6
2024-05-08 12:53:20 +02:00
ebb70fe9b6
gnu: r-decontam: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-decontam): Update to 1.24.0.
Change-Id: Ia740e8953bd970ba9454944da2459a8d39c990bf
2024-05-08 12:53:20 +02:00
f1dbdc8522
gnu: r-deconrnaseq: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.46.0.
Change-Id: I637bcbd43e55d0125a2273e2431b9effebb4d409
2024-05-08 12:53:20 +02:00
aec3a47c8c
gnu: r-decomptumor2sig: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.20.0.
Change-Id: I4f7cd015a500b904d725a9098907253b81e7d57c
2024-05-08 12:53:20 +02:00
40e85015aa
gnu: r-decipher: Update to 3.0.0.
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* gnu/packages/bioconductor.scm (r-decipher): Update to 3.0.0.
[propagated-inputs]: Remove r-rsqlite.
Change-Id: I8fd3b7c179b7d4e06ad1e7f592add40b77061eee
2024-05-08 12:53:20 +02:00
199305df78
gnu: r-dearseq: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.16.0.
Change-Id: I34f7edb001fb1f63e67b5e2c8378f746aa8b7ad8
2024-05-08 12:53:20 +02:00
94b4335bd5
gnu: r-damefinder: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.16.0.
Change-Id: I934f27e813e05d5cfef32eb0bec0bd784a200c5a
2024-05-08 12:53:20 +02:00
091e0144a2
gnu: r-dama: Update to 1.76.0.
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* gnu/packages/bioconductor.scm (r-dama): Update to 1.76.0.
Change-Id: Ia2f960bffb184165a8aecfdb6673c03f4f10fc57
2024-05-08 12:53:20 +02:00
ba9b588001
gnu: r-cummerbund: Update to 2.46.0.
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* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.46.0.
Change-Id: Ia93d7cb81143bfd418d943717ee1cd5e748a0902
2024-05-08 12:53:20 +02:00
6134ddd012
gnu: r-coverageview: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.42.0.
Change-Id: I357e71ea80487c2ea7d6c0b8444684567c901af1
2024-05-08 12:53:20 +02:00
5c83d7b88c
gnu: r-coregx: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-coregx): Update to 2.8.0.
Change-Id: I1d33a891228edf133d8cb0948bb605df2c9c5765
2024-05-08 12:53:20 +02:00
cf92a83ec2
gnu: r-cellid: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-cellid): Update to 1.12.0.
Change-Id: I620fe4d005eb28786f3d6b50b3459953f23e8184
2024-05-08 12:53:20 +02:00
807f16e459
gnu: r-cardelino: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.6.0.
Change-Id: I2b3b37fb959546ae218f03cd727a32a1808a224b
2024-05-08 12:53:19 +02:00
5ae5bc6a87
gnu: r-breakpointr: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.22.0.
Change-Id: If1c9422eb8780bbeafb5054c5b0533411f40590d
2024-05-08 12:53:19 +02:00
94cb2cee11
gnu: r-biocgenerics: Update to 0.50.0.
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* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.50.0.
Change-Id: I2b44832f6cde8d943db8307050efa6b68bb814b4
2024-05-08 12:53:19 +02:00
eaeab2d12d
gnu: r-biocversion: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.19.1.
Change-Id: Ia707fe47c7749cc63fa057dddcc0d49f7443c2a1
2024-05-08 12:53:19 +02:00
06f7d75e10
gnu: r-barcodetrackr: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.12.0.
Change-Id: Ia20e92c383c7a89e1d6accba98cf879cd57de25a
2024-05-08 12:53:19 +02:00
89c8795fb8
gnu: r-banocc: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-banocc): Update to 1.28.0.
Change-Id: I90a50fc574f2c064375acad39315b167c5cb3586
2024-05-08 12:53:19 +02:00
47ab649ecd
gnu: r-bandits: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-bandits): Update to 1.20.0.
Change-Id: Icaa2655549d255e2894ed15977f0e5f0c9041fc4
2024-05-08 12:53:19 +02:00
3f1b37c851
gnu: r-bambu: Update to 3.6.0.
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* gnu/packages/bioconductor.scm (r-bambu): Update to 3.6.0.
Change-Id: I206c2867ba40bba100bd23c7d861bc3be778e09f
2024-05-08 12:53:19 +02:00
23d6984ba1
gnu: r-badregionfinder: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.32.0.
Change-Id: I396ff2488562d13c93280082e93e5de3821c93da
2024-05-08 12:53:19 +02:00
ef47716688
gnu: r-bader: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-bader): Update to 1.42.0.
Change-Id: I6fa42bf109b5e5bfad1eb4f032e453475af42c2e
2024-05-08 12:53:19 +02:00
2f1fe68bee
gnu: r-basespacer: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.48.0.
Change-Id: I9e2b2cb3a9497453e2653cdbe0288987ea187f0a
2024-05-08 12:53:19 +02:00
48c7540a27
gnu: r-bags: Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-bags): Update to 2.44.0.
Change-Id: I4d7438dca325f8814d7c3bc644aa79c2ebab9d22
2024-05-08 12:53:19 +02:00
204c59d2fd
gnu: r-baalchip: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.30.0.
[inputs]: Remove perl.
Change-Id: I42125e71f8985a4b9d9e797b1178386d2f9d6451
2024-05-08 12:53:19 +02:00
e1c3e7b8d0
gnu: r-awst: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-awst): Update to 1.12.0.
Change-Id: I1d9bdf4378b978bf9a3ee6e996c78eb25c2e10ad
2024-05-08 12:53:19 +02:00
6622a40596
gnu: r-awfisher: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.18.0.
Change-Id: I0f28eefaa791426014d2ed3268aa6a8cff6ac6ef
2024-05-08 12:53:19 +02:00
030591f684
gnu: r-attract: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-attract): Update to 1.56.0.
Change-Id: Ic9657b83e27fd228ef454b4f455fbb79002f056e
2024-05-08 12:53:19 +02:00
00c6334309
gnu: r-atsnp: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.20.0.
Change-Id: I36f9baa45b2483bcbb0c9a25c5b938c4a0df16fa
2024-05-08 12:53:19 +02:00
cd616ff646
gnu: r-atena: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-atena): Update to 1.10.0.
[propagated-inputs]: Add r-cli, r-genomicfeatures, and r-matrixgenerics.
Change-Id: I2aef381c001638e111125cd60b07b5fc7b9e01a9
2024-05-08 12:53:19 +02:00
499ca07277
gnu: r-asset: Update to 2.22.0.
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* gnu/packages/bioconductor.scm (r-asset): Update to 2.22.0.
Change-Id: Ie3984d92c32734b258f4106d9bef01bef060e089
2024-05-08 12:53:19 +02:00
537c1879a8
gnu: r-assessorf: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.22.0.
Change-Id: Ic2f5c1a2e5443e69574e30abe86ae3a19c2156ea
2024-05-08 12:53:19 +02:00
2fc6d3bf31
gnu: r-aspli: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-aspli): Update to 2.14.0.
[propagated-inputs]: Add r-txdbmaker.
Change-Id: Ib60f87bf6166c68c6baded4e8555bafcf9573100
2024-05-08 12:53:19 +02:00
e9d16dec70
gnu: r-asics: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-asics): Update to 2.20.0.
Change-Id: I6a778323b57e99a8bc8c1a2e2227079d9bdaff1c
2024-05-08 12:53:19 +02:00
ddddc13f93
gnu: r-asgsca: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.38.0.
Change-Id: I3f22548eae87db3eeb6691b45c30ab2edd452aac
2024-05-08 12:53:19 +02:00
dffc5cf95c
gnu: r-aseb: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-aseb): Update to 1.48.0.
Change-Id: Ifb4450374fa2831bab9e360de6ec12f7c22f47d9
2024-05-08 12:53:18 +02:00
f4c71864d5
gnu: r-asafe: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-asafe): Update to 1.30.0.
Change-Id: Id54647b1dadf071ea51c180ca50e5386a6078188
2024-05-08 12:53:18 +02:00
3f31823f41
gnu: r-arrayquality: Update to 1.82.0.
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* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.82.0.
Change-Id: I94b389cd121cb3748ad7a938c37b0c5152820ba3
2024-05-08 12:53:18 +02:00
a0cef9b470
gnu: r-arraymvout: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.62.0.
Change-Id: Ic8cc9efc851af7471125e2ff2084d685c099d32b
2024-05-08 12:53:18 +02:00
db7d9feb79
gnu: r-arrayqualitymetrics: Update to 3.60.0.
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* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.60.0.
Change-Id: Ia67c533b2b5c227a8cd2acaac8ab717517cd5d05
2024-05-08 12:53:18 +02:00
e17b3add0d
gnu: r-arrayexpress: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.64.0.
Change-Id: I01be57f62c13271442c4fb174ad923e29f8f63e8
2024-05-08 12:53:18 +02:00
98eebefbf8
gnu: r-antiprofiles: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.44.0.
Change-Id: Iac22dec83898624e88ad67983d4809729d6e2d09
2024-05-08 12:53:18 +02:00
98890f8da7
gnu: r-annmap: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-annmap): Update to 1.46.0.
Change-Id: I2f693693c75b2729aa81c593c0ff3c07cc4f486f
2024-05-08 12:53:18 +02:00
22784fbacf
gnu: r-anf: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-anf): Update to 1.26.0.
Change-Id: I0027bfaa713cf5b75c9ec52d72715c1d56955b92
2024-05-08 12:53:18 +02:00
28cbac7461
gnu: r-aneufinder: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.32.0.
Change-Id: I1e3061cf514b735c84abc8b4e850236f493dd75d
2024-05-08 12:53:18 +02:00
416fb74e92
gnu: r-altcdfenvs: Update to 2.66.0.
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* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.66.0.
Change-Id: I4d6881076a68394206501f254045ff59a2b4bcec
2024-05-08 12:53:18 +02:00
d237852199
gnu: r-alpsnmr: Update to 4.6.0.
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* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.6.0.
Change-Id: Ia35eda0125de276989767b8d663a128f3014582a
2024-05-08 12:53:18 +02:00
b6f742d0f6
gnu: r-alphabeta: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.18.0.
Change-Id: I9970a01aec806faad204033d9ece392becfaca99
2024-05-08 12:53:18 +02:00
70ac81d484
gnu: r-alevinqc: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.20.0.
Change-Id: Ib24ff6f3db37bf5d746c745999b768e1ec89dca3
2024-05-08 12:53:18 +02:00
af81afffd5
gnu: r-aldex2: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.36.0.
Change-Id: Iab362c11ad5960901eaefa016cda09cf65d23355
2024-05-08 12:53:18 +02:00
47d9a75f1b
gnu: r-anvil: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-anvil): Update to 1.16.0.
[propagated-inputs]: Add r-biocbaseutils and r-yaml.
Change-Id: I30f38ca310819d75e5f57e381b0845632b022ff7
2024-05-08 12:53:18 +02:00
736a73dec9
gnu: r-annotationhubdata: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.34.0.
Change-Id: I6e786c6c087b70650b3d0d84d14513a5856a08f2
2024-05-08 12:53:18 +02:00
daae14ea1d
gnu: r-animalcules: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.20.0.
[propagated-inputs]: Add r-ggforce and r-tidyr.
Change-Id: Ifc2493d7de069ba05ab79e6b8aeb0302325c9603
2024-05-08 12:53:18 +02:00
6ed0d665aa
gnu: r-ancombc: Update to 2.6.0.
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* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.6.0.
Change-Id: I925595eb4d2191a75880cc28188d9d71e55bebd9
2024-05-08 12:53:18 +02:00
e6f568abde
gnu: r-anaquin: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.28.0.
Change-Id: I4ab5cff777b72696008df29ad3ef12f35e3106db
2024-05-08 12:53:18 +02:00
a10b2020ca
gnu: r-amaretto: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.20.0.
Change-Id: I22c13aa35f82397a9af41f44f5f335836b69e97d
2024-05-08 12:53:18 +02:00
530f6d12d9
gnu: r-amplican: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-amplican): Update to 1.26.0.
[propagated-inputs]: Add r-pwalign.
Change-Id: I753f06199b24411565122e188da70e87278d7aa2
2024-05-08 12:53:18 +02:00
e623b114d2
gnu: r-amountain: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-amountain): Update to 1.30.0.
Change-Id: I17e8eedccc79be973bba942ffbfd8ce24d89e43e
2024-05-08 12:53:18 +02:00
01e031f6c5
gnu: r-airpart: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-airpart): Update to 1.12.0.
Change-Id: Iea2277db96d4b8785e0a0199ca08256699c31777
2024-05-08 12:53:18 +02:00
3a6e6347c2
gnu: r-aims: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-aims): Update to 1.36.0.
Change-Id: Iff2af60c0b6a0fc575d142a10f0156d520efd802
2024-05-08 12:53:17 +02:00
73e16238c8
gnu: r-agimicrorna: Update to 2.54.0.
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* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.54.0.
Change-Id: I16294ff145be59bb5499ad16772cd4efe72347f2
2024-05-08 12:53:17 +02:00
aa54d5f36f
gnu: r-adductomicsr: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.20.0.
Change-Id: I048fb7fbc173ce6883d80ca097b75b69704e2750
2024-05-08 12:53:17 +02:00
1406bc656a
gnu: r-agilp: Update to 3.36.0.
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* gnu/packages/bioconductor.scm (r-agilp): Update to 3.36.0.
Change-Id: Iddd5266a7f88a3a8eae567151b14010433f98c61
2024-05-08 12:53:17 +02:00
c30eaed62b
gnu: r-aggregatebiovar: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.14.0.
Change-Id: I5a510e12942e9afcd29b52f89d737a8a5707e3be
2024-05-08 12:53:17 +02:00
747c727c8f
gnu: r-agdex: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-agdex): Update to 1.52.0.
Change-Id: I2facf3bc4e3d504804fed3b42b26d6fce393ea3b
2024-05-08 12:53:17 +02:00
fe2f93f9fc
gnu: r-affyrnadegradation: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.50.0.
Change-Id: Iaa9846636b2cb4c1a303f5190be4d3e3f9ee9240
2024-05-08 12:53:17 +02:00
4dc97b0c46
gnu: r-affyplm: Update to 1.80.0.
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* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.80.0.
Change-Id: I2c16761eb1ad8cb2ffc087f6b928686964157efd
2024-05-08 12:53:17 +02:00
e5ab4f1dca
gnu: r-affylmgui: Update to 1.78.0.
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* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.78.0.
Change-Id: If26c0573c98b3d1bab684127e969489ae0c8c51e
2024-05-08 12:53:17 +02:00
8c028e21bc
gnu: r-affyilm: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.56.0.
Change-Id: I118c3fc0040100233d79539d5f3c24836e882f4c
2024-05-08 12:53:17 +02:00
32f127f915
gnu: r-affixcan: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.22.0.
Change-Id: Idf8886497dfabcd10502a36aa002ba7a83e46938
2024-05-08 12:53:17 +02:00
aa5177a090
gnu: r-adsplit: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.74.0.
Change-Id: Ib471d6086dfc782ca4ce5efaa8d7f59e601d3e41
2024-05-08 12:53:17 +02:00
128d0ead08
gnu: r-adimpute: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.14.0.
Change-Id: I888c1281fe44b7877fe01ad10cbca63a30ba337c
2024-05-08 12:53:17 +02:00
6a698c1162
gnu: r-adamgui: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.20.0.
Change-Id: I16b63e3e98eddfe0e038b40062d38524881b8e41
2024-05-08 12:53:17 +02:00
21b9cd0355
gnu: r-adam: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-adam): Update to 1.20.0.
Change-Id: I417244fa99e124a285fb020e758ba471d6620d4e
2024-05-08 12:53:17 +02:00
e28ff2ed30
gnu: r-adacgh2: Update to 2.44.0.
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* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.44.0.
[propagated-inputs]: Remove r-snapcgh.
Change-Id: I47c7a0d00d32cf71ec2f16844ab3a60d120cfc3f
2024-05-08 12:53:17 +02:00
5d1d4936b1
gnu: r-absseq: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-absseq): Update to 1.58.0.
Change-Id: I9433d9307416e967a70587eee5b5d891c270f8ee
2024-05-08 12:53:17 +02:00
1fdc5eba8a
gnu: r-abarray: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-abarray): Update to 1.72.0.
Change-Id: I207f652b0c5f6d9069de675f245f4fb471d560e9
2024-05-08 12:53:17 +02:00
6dbc09c6d0
gnu: r-tximportdata: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-tximportdata): Update to 1.32.0.
Change-Id: If18a4d7d8b6877beedec24cb17a989e7485af8c8
2024-05-08 12:53:17 +02:00
6332e4ed23
gnu: r-tcgabiolinksgui-data: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.24.0.
Change-Id: Ie34a052ff74d193f7472ef25fa9fabf6dbbb19a7
2024-05-08 12:53:17 +02:00
0148d18e4b
gnu: r-sesamedata: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.22.0.
Change-Id: I7b57169a24d3f210f9d5373d375c1fcdc8a32b76
2024-05-08 12:53:17 +02:00
49912ae08e
gnu: r-parathyroidse: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.42.0.
Change-Id: I1ee5d4eb8d2f511cd437851aa6fd17b23f85b548
2024-05-08 12:53:17 +02:00
8c4929306f
gnu: r-curatedtcgadata: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.26.0.
Change-Id: Ia96fe42b0b41043879cff80d99c56b48afb06e5b
2024-05-08 12:53:17 +02:00
a14d5f02b9
gnu: r-gagedata: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.42.0.
Change-Id: I3a8be1fb8255f621b6481dabdeac5460b90ebbb7
2024-05-08 12:53:17 +02:00
eca80e2bf7
gnu: r-affydata: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-affydata): Update to 1.52.0.
Change-Id: Ibbdeca7d8ed91da88d14f547403d43c8b9e45775
2024-05-08 12:53:17 +02:00
aa538cc886
gnu: r-all: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-all): Update to 1.46.0.
Change-Id: I20d1f918a24e47cee853668b736639369c1e904e
2024-05-08 12:53:17 +02:00
f27c6caa8c
gnu: r-hsmmsinglecell: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.24.0.
Change-Id: Ie94c7cd87ac4cdaad47035cb110fb58bb6f68126
2024-05-08 12:53:16 +02:00
5b5c134658
gnu: r-pasilla: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.32.0.
Change-Id: I90a11b64f4cba746c9d5d70bd7746497fe3781a6
2024-05-08 12:53:16 +02:00
7d5f112600
gnu: r-msigdb: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-msigdb): Update to 1.12.0.
Change-Id: Ia63cb5d074afcd5b6c597d22c4e5c4f14b59303d
2024-05-08 12:53:16 +02:00
46eb71b653
gnu: r-msexperiment: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-msexperiment): Update to 1.6.0.
[propagated-inputs]: Add r-biocgenerics and r-dbi.
Change-Id: I1acadf9e878f4593baf583933c5ccca3daf7ec0d
2024-05-08 12:53:16 +02:00
7e05fa61b0
gnu: r-msdata: Update to 0.44.0.
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* gnu/packages/bioconductor.scm (r-msdata): Update to 0.44.0.
Change-Id: I479c861eceb1f50c91d589118a68e217236e89e4
2024-05-08 12:53:16 +02:00
27c00a789e
gnu: r-minfidata: Update to 0.50.0.
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* gnu/packages/bioconductor.scm (r-minfidata): Update to 0.50.0.
Change-Id: I6504e8f6ffe57ba1cdf538d2f60c21ff26b06407
2024-05-08 12:53:16 +02:00
efc85dfb4d
gnu: r-mousegastrulationdata: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.18.0.
Change-Id: I4b005c54451d7c306cb4137e4fe668c6e53c840a
2024-05-08 12:53:16 +02:00
16e58db1ba
gnu: r-methylclockdata: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-methylclockdata): Update to 1.12.0.
Change-Id: Ibfa765d93c0ed2005f7fb6f630c3104cd30e8371
2024-05-08 12:53:16 +02:00
3b1f4f041d
gnu: r-macrophage: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.20.0.
Change-Id: I589dd25948fedd3bbe91fddada8e155567cf2d93
2024-05-08 12:53:16 +02:00
89a647662c
gnu: r-jaspar2016: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-jaspar2016): Update to 1.32.0.
Change-Id: I826a8a93e0adce98b7ad767c8fbaa7ffb957c554
2024-05-08 12:53:16 +02:00
5c28a456e7
gnu: r-italicsdata: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.42.0.
Change-Id: I10947b136b273e06b9ac88bf1786b62b0a6739f5
2024-05-08 12:53:16 +02:00
cd0b5d0892
gnu: r-illumina450probevariants-db: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.40.0.
Change-Id: Ic18b5dcdda0e002375bb9ed43944168f78eb2906
2024-05-08 12:53:16 +02:00
3f122a9a1a
gnu: r-hdcytodata: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.24.0.
Change-Id: Icf2ad5519ee710c3b275f2f608a2bc7674bf3805
2024-05-08 12:53:16 +02:00
38d81984dc
gnu: r-genomationdata: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.36.0.
Change-Id: Idf6dbb8e87ed124d9dd3ae10ff3ea78c58b22496
2024-05-08 12:53:16 +02:00
66f99b50e5
gnu: r-genelendatabase: Update to 1.39.0.
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* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.39.0.
Change-Id: I0630a8fed9f28ad5883a8bb1e4f3c77f16e7ac34
2024-05-08 12:53:16 +02:00
76805a5744
gnu: r-flowsorted-blood-epic: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.8.0.
Change-Id: I000d233d1a78f36e8daed08f0112cc592b2f99f6
2024-05-08 12:53:16 +02:00
aded842e92
gnu: r-flowsorted-blood-450k: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.42.0.
Change-Id: I07c3a8640e8b7ca9e36b0a3e81d9831fc4d7299e
2024-05-08 12:53:16 +02:00
f5a724eb16
gnu: r-copyhelper: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.36.0.
Change-Id: I4726f8bf6c654b03ee4eb84ae697e7844d06e164
2024-05-08 12:53:16 +02:00
b53302805e
gnu: r-chromstardata: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.30.0.
Change-Id: I19aa49ac9d6499d2cea91b0d45fd04f10511b18f
2024-05-08 12:53:16 +02:00
cfb000d7e5
gnu: r-champdata: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-champdata): Update to 2.36.0.
Change-Id: I5387b2e3722e95911a5355cc56d83086ef205a4c
2024-05-08 12:53:16 +02:00
9e2ac92d2f
gnu: r-celldex: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-celldex): Update to 1.14.0.
[propagated-inputs]: Add r-alabaster-base, r-alabaster-matrix, r-alabaster-se, r-dbi,
r-gypsum, r-jsonlite, r-matrix, and r-rsqlite.
Change-Id: Iba166c14dae781e14a9762dc3480ece5ba12a802
2024-05-08 12:53:16 +02:00
4bcc9c836d
gnu: r-breastcancervdx: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-breastcancervdx): Update to 1.42.0.
Change-Id: I52de3659b7d07d03491091ef0de4ee5d305ec4eb
2024-05-08 12:53:16 +02:00
0e2bfbce09
gnu: r-breakpointrdata: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.22.0.
Change-Id: I111126dae913bd01e5a3f87551108e6ba1733b89
2024-05-08 12:53:16 +02:00
9d1c351076
gnu: r-biscuiteerdata: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.18.0.
Change-Id: Icc31cf376b8f2f085cc045c02383164128f0f009
2024-05-08 12:53:16 +02:00
a4e4f9cf21
gnu: r-bodymaprat: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-bodymaprat): Update to 1.20.0.
Change-Id: I8eb8b9e71cb1068e058b3e827096f25607ac5f01
2024-05-08 12:53:15 +02:00
62e7c74453
gnu: r-bladderbatch: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.42.0.
Change-Id: I49350259fef502e59368e4dc0894dcf52db33917
2024-05-08 12:53:15 +02:00
5b87013c93
gnu: r-bcellviper: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.40.0.
Change-Id: I5d7af04599d79147eaa2626aead238179e78cfde
2024-05-08 12:53:15 +02:00
6ac2448400
gnu: r-arrmdata: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.40.0.
Change-Id: I4695eec74200dd5deac20a71c020a9517e56f9a7
2024-05-08 12:53:15 +02:00
fa4635d3ad
gnu: r-aneufinderdata: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.32.0.
Change-Id: I91727bf7974078374a2bf9ca935b9df2ca60201f
2024-05-08 12:53:15 +02:00
4add20468d
gnu: r-adductdata: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.20.0.
Change-Id: I9f795cf931e90fa5f8331a5d3ffa855b56355ca6
2024-05-08 12:53:15 +02:00
378904acf5
gnu: r-pfam-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.19.1.
Change-Id: If95fa52bdfeb87ed606b9b7564ce73606a8616c8
2024-05-08 12:53:15 +02:00
7eabe6d69d
gnu: r-escape: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-escape): Update to 2.0.0.
[propagated-inputs]: Remove r-broom, r-data-table, r-matrix, and r-rlang; add r-aucell,
r-ggdist, r-ggpointdensity, and r-seuratobject.
Change-Id: I7fa2ea581a85a579feeac50e1e4b32ac4fa83d7b
2024-05-08 12:53:15 +02:00
a5729ea6ae
gnu: r-org-mm-eg-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.19.1.
Change-Id: I3ae90e3d60941caf901d49c91662f38900588a27
2024-05-08 12:53:15 +02:00
afb439ddf1
gnu: r-org-hs-eg-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.19.1.
Change-Id: Ib120639d743ba4abd0a129f968bd09a3f9c62775
2024-05-08 12:53:15 +02:00
b0cd3610d3
gnu: r-org-dr-eg-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.19.1.
Change-Id: Ib5d87389f017f2a4ed106ecaef01f82a689ad46e
2024-05-08 12:53:15 +02:00
1e295ff0d3
gnu: r-org-dm-eg-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.19.1.
Change-Id: I3c19de819fe694d9af11c4263132338340fccc47
2024-05-08 12:53:15 +02:00
30be3f2fc8
gnu: r-org-ce-eg-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.19.1.
Change-Id: If5ae28c7f68194c7e6dc1b849932417ec1679ec9
2024-05-08 12:53:15 +02:00
d85a5a2047
gnu: r-go-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-go-db): Update to 3.19.1.
Change-Id: I894831796ac3121795d76df059b10680e9545ba0
2024-05-08 12:53:15 +02:00
5cac1ec6c5
gnu: r-genomeinfodbdata: Update to 1.2.12.
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* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.12.
Change-Id: I185d52161ec45de7d03fedeb51f2a28864df9903
2024-05-08 12:53:15 +02:00
44c5036af2
gnu: r-reactome-db: Update to 1.88.0.
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* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.88.0.
Change-Id: I80b58a45e8265e82e7a84d8d428fc4339fd926a7
2024-05-08 12:53:15 +02:00
43b32ab2e6
gnu: r-org-sc-sgd-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.19.1.
Change-Id: Iee6d57797bb3dde152ce0e22a3ed25c30c039a09
2024-05-08 12:53:15 +02:00
487cf830ae
gnu: r-org-bt-eg-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.19.1.
Change-Id: If37dc4be3287f0729b2e2d4aecef6745700b429c
2024-05-08 12:53:15 +02:00
37696fafac
gnu: r-org-eck12-eg-db: Update to 3.19.1.
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* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.19.1.
Change-Id: I0f3a84abd0dff114231c341e776b542a7b047176
2024-05-08 12:53:15 +02:00
a1852df9ff
gnu: r-mafh5-gnomad-v3-1-2-grch38: Update to 3.15.1.
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* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): Update to 3.15.1.
Change-Id: I6b83a3701c2a4282864bf648677b258c1315598c
2024-05-08 12:53:15 +02:00
8d531f9afb
gnu: Add r-ucsc-utils.
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* gnu/packages/bioconductor.scm (r-ucsc-utils): New variable.
Change-Id: I02eebaa69a57b8bbd97b38ae7d62799971f70d45
2024-05-08 12:53:15 +02:00
61a5676a9d
gnu: r-biocpkgtools: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.22.0.
Change-Id: I4afb2530597279d9f2b6c01fc7d76c95c88aa629
2024-05-08 12:53:14 +02:00
b9040cb312
gnu: r-debcam: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-debcam): Update to 1.22.0.
Change-Id: Iec96dd28f8adc4d8c070f2e50098a02a4582ec33
2024-05-08 12:53:14 +02:00
45b4f78687
gnu: Add r-txdbmaker.
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* gnu/packages/bioconductor.scm (r-txdbmaker): New variable.
Change-Id: I2e236b42117525a48917604ea14396ff661b72f7
2024-05-08 12:53:14 +02:00
cf3471cc9e
gnu: Add r-pwalign.
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* gnu/packages/bioconductor.scm (r-pwalign): New variable.
Change-Id: I6a12f48c5de948292af7c6888b12e849e1f42db7
2024-05-08 12:53:14 +02:00
155ac301f7
gnu: Add r-psmatch.
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* gnu/packages/bioconductor.scm (r-psmatch): New variable.
Change-Id: I7b3071424563b713912016301f551ce00aceddea
2024-05-08 12:53:14 +02:00
6e126301b4
gnu: Add r-gypsum.
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* gnu/packages/bioconductor.scm (r-gypsum): New variable.
Change-Id: Id3bdf044d9a885605b1b2b2ceba32398da6ddec0
2024-05-08 12:53:14 +02:00
2c6bd40baf
gnu: Add r-alabaster-se.
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* gnu/packages/bioconductor.scm (r-alabaster-se): New variable.
Change-Id: I698a2d678e4819d9ac4b2668a2f7ef2063f8d674
2024-05-08 12:53:14 +02:00
1dd2cce88f
gnu: Add r-alabaster-sce.
...
* gnu/packages/bioconductor.scm (r-alabaster-sce): New variable.
Change-Id: I8121614d5b93922555b6cb5fd7a05d68980aff20
2024-05-08 12:53:14 +02:00
092609b36a
gnu: Add r-alabaster-ranges.
...
* gnu/packages/bioconductor.scm (r-alabaster-ranges): New variable.
Change-Id: I99e1e6549537acb37de2788961dbd17ef6c1de27
2024-05-08 12:53:14 +02:00
ba8fbb89e4
gnu: Add r-alabaster-matrix.
...
* gnu/packages/bioconductor.scm (r-alabaster-matrix): New variable.
Change-Id: If5b438983a70f8f81e3442d8a1cb3821f4e3489a
2024-05-08 12:53:14 +02:00
8031162607
gnu: Add r-alabaster-base.
...
* gnu/packages/bioconductor.scm (r-alabaster-base): New variable.
Change-Id: Ifb9fe95fb237d12dadf134278f130e614925b5ec
2024-05-08 12:53:14 +02:00
9bd400722d
gnu: Add r-alabaster-schemas.
...
* gnu/packages/bioconductor.scm (r-alabaster-schemas): New variable.
Change-Id: I3d9218af9b4408e3375f9ccd98a4c95935b2c273
2024-05-08 12:53:14 +02:00
1117e96d9f
gnu: r-cytoml: Update to 2.16.0.
...
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.16.0.
Change-Id: I14ae3ae0d5ff8d66b964651b6fe3753d934f1554
2024-05-08 12:53:14 +02:00
c29bc85ec6
gnu: Add r-jsonvalidate.
...
* gnu/packages/cran.scm (r-jsonvalidate): New variable.
Change-Id: I1393fb3b4034f870663dc887be783e8aaf4c9884
2024-05-08 12:53:14 +02:00
66e179ac18
gnu: r-xts: Remove vignette outputs.
...
* gnu/packages/cran.scm (r-xts)[source]: Add snippet to remove generated
files.
Change-Id: Iba82b900e632e2cf5a99c9deb807bae6cf3dabcd
2024-05-08 12:53:14 +02:00
628d007b83
gnu: r-desctools: Set HOME variable.
...
* gnu/packages/statistics.scm (r-desctools)[argumonts]: Add phase 'pre-check.
Change-Id: Icec222a5cdcb2c95ad7bd600ce5188bd5588bb4e
2024-05-08 12:53:14 +02:00
79c2b32337
gnu: r-with-tests: Update to 4.4.0.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.4.0.
Change-Id: If77c95867cc16141c397e48c899a9ade3e89876d
2024-05-08 12:53:14 +02:00
2bea3f2562
gnu: kubo: Unbundle go-cidutil, go-log and go-ipfs-util.
...
* gnu/packages/ipfs.scm (kubo) [source]: Delete "go-cidutil", "go-log",
"go-ipfs-util" from bundled packages.
[inputs]: Add go-github-com-ipfs-go-cidutil, go-github-com-ipfs-go-log,
go-github-com-ipfs-go-log-v2, and go-github-com-ipfs-go-ipfs-util.
Change-Id: I3e49deb9572c6ac471210a392a52117fd0b9ce1a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:07:21 +01:00
231ffaf1ac
gnu: Add go-github-com-ipfs-go-cidutil.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-cidutil): New variable.
Change-Id: I6077fc00d22b541a959a6623c8666c35288ca105
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:05:05 +01:00
6f60f90c15
gnu: Add go-github-com-ipfs-go-log.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log): New variable.
Change-Id: I5b5b1d594b5458a7ca156346c6a6dc3c8d5bd69d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:05:05 +01:00
58cc52f2dc
gnu: Add go-github-com-ipfs-go-log-v2.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log-v2): New variable.
Change-Id: Id6d85bfa883670345420c21937681ae2844f6263
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 00:03:02 +01:00
8cb146a3e6
gnu: Add go-github-com-ipfs-go-detect-race.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-detect-race): New variable.
Change-Id: Ic65c12a717a50c4309bc89d29d158a43fbc0c81a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 23:51:25 +01:00
f669a24a95
gnu: Add go-github-com-ipfs-go-ipfs-util.
...
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-util): New variable.
Change-Id: Ic496282dc62b7c0d5bd9017aff6a3818b2661309
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 23:51:16 +01:00
2795d0f3e7
gnu: kubo: Unbundle go-bazil-org-fuse.
...
* gnu/packages/ipfs.scm (kubo) [source]: Remove vendor/bazil.org.
[inputs]: Add go-bazil-org-fuse.
Change-Id: Ie55e609c15a6eaca7ec32521a55620bf674af240
2024-05-07 23:18:48 +01:00
1f6c4f226d
gnu: Add go-bazil-org-fuse.
...
* gnu/packages/golang-xyz.scm (go-bazil-org-fuse): New variable.
Change-Id: I933d90dca50110f53831febc81d587c14973934f
2024-05-07 23:18:48 +01:00
330a133b85
gnu: go-git-sr-ht-emersion-go-scfg: Move to golang-xyz.
...
* gnu/packages/golang.scm: (go-git-sr-ht-emersion-go-scfg): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here
Change-Id: I75cc680543313e41abc86e71d48a9be9e9ce694a
2024-05-07 23:18:48 +01:00
74b2a9d5a4
gnu: go-git-sr-ht-emersion-gqlclient: Move to golang-web.
...
* gnu/packages/golang.scm (go-git-sr-ht-emersion-gqlclient): Move from
here ...
* gnu/packages/golang-web.scm: ... to here.
Change-Id: I2b07dc198f6710680da0430e5f302893060e37b8
2024-05-07 23:18:47 +01:00
072b06f2f3
gnu: go-git-sr-ht-sircmpwn-getopt: Move to golang-xyz.
...
* gnu/packages/golang.scm (go-git-sr-ht-sircmpwn-getopt): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here.
Change-Id: Ic53ec6828f7389326191b659dd16b623e6d1af43
2024-05-07 23:18:47 +01:00
9716914d4e
gnu: web: Remove syncthing module from used modules.
...
There is no more mudule from syncthing which needs to be imported
anymore.
* gnu/packages/web.scm: Remove (gnu packages syncthing) module.
Change-Id: I688e72009e2daa5e75eaeaaeff9026ca888b266b
2024-05-07 23:17:46 +01:00
fb44cd89df
gnu: go-github-com-nbrownus-go-metrics-prometheus: Disable tests.
...
* gnu/packages/golang-xyz.scm (go-github-com-nbrownus-go-metrics-prometheus):
Disable all tests.
Change-Id: I7f340fd1e58edc0203068c762a1bbc798003a84b
2024-05-07 21:33:45 +01:00
aa1090713a
gnu: tmsu: Enable test suite.
...
* gnu/packages/file-systems.scm (tmsu): Fail over to the project's
Makefile targets.
[arguments]: <#:go>: Use go-1.21.
<#:phases>: Add 'adjust-makefile' phase. Use custom 'build, 'check and
'install phases.
Change-Id: Ice920f2196123f1a1f1561879ab919bc0d4e8512
2024-05-07 21:33:44 +01:00
c7bd735bc4
gnu: sqls: Use go-1.21.
...
Merge all inputs into native-inputs since the output result of the
package is an executable that does not require sources from Golang
modules to be available after installation.
* gnu/packages/databases.scm (sqls):
[arguments]: <#:go>: Use go-1.21.
[inputs]: Remove go-github-com-go-sql-driver-mysql,
go-github-com-lib-pq, go-github-com-mattn-go-runewidth,
go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter,
go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2,
go-golang-org-x-crypto, go-golang-org-x-xerrors, and
go-gopkg-in-yaml-v2.
[native-inputs]: Add go-github-com-go-sql-driver-mysql,
go-github-com-lib-pq, go-github-com-mattn-go-runewidth,
go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter,
go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2,
go-golang-org-x-crypto, go-golang-org-x-xerrors, and
go-gopkg-in-yaml-v2.
Change-Id: I9312a483dfa954b5f0ad4cfac04b5153570bf571
2024-05-07 21:33:44 +01:00
e582f27a53
gnu: Add go-github-com-msteinert-pam-v2.
...
* gnu/packages/golang-xyz.scm (go-github-com-msteinert-pam-v2): New variable.
Change-Id: I7dfcb72703722f894eb52c603f02e64e7350f53a
2024-05-07 21:33:44 +01:00
243ff41195
gnu: Add soju.
...
* gnu/packages/irc.scm (soju): New variable..
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I18b7e574339e98fdf2623338aac1635c8e727699
2024-05-07 21:33:44 +01:00
13912821a2
gnu: go-github-com-matttproud-golang-protobuf-extensions-pbutil: Update to 2.0.0.
...
* gnu/packages/syncthing.scm (go-github-com-matttproud-golang-protobuf-extensions-pbutil):
Update to 2.0.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ia9f1acacd337b95526ee0b9b7b31f1de598f30d3
2024-05-07 21:33:44 +01:00
b2054615da
gnu: go-github-com-prometheus-client-golang: Update to 1.17.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-client-golang):
Update to 1.17.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I4d3e9d3e61991f94fc2a7bd4b85e7d4010c4b508
2024-05-07 21:32:36 +01:00
2359feb658
gnu: go-github-com-prometheus-common: Update to 0.45.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-common): Update to
0.45.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic03cdaf87253df869e1d791336189032fac0d625
2024-05-07 15:38:28 +01:00
b7800aa34f
gnu: go-github-com-prometheus-client-model: Update to 0.5.0.
...
* gnu/packages/golang.scm (go-github-com-prometheus-client-model):
Update to 0.5.0.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iebb57390b99a4ed2567588872a9745a69aae9ced
2024-05-07 15:38:28 +01:00
881f9630c9
gnu: Add go-gopkg-in-irc-v4.
...
* gnu/packages/irc.scm (go-gopkg-in-irc-v4): New variable.
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ie1afdde3d1a23154e592445b5ce91e5918c6c822
2024-05-07 15:38:28 +01:00
b6a8c4c142
gnu: go-gopkg-in-irc-v3: Enable tests.
...
* gnu/packages/irc.scm (go-gopkg-in-irc-v3): Enable tests, remove input
lables.
[propagated-inputs]: Remove go-github-com-stretchr-testify.
[native-inputs]: Add go-github-com-stretchr-testify and
python-irc-parser-tests.
Change-Id: I83c8094e9417052781993c3cde900c47875a2029
2024-05-07 15:38:28 +01:00
bb49060039
gnu: Add python-irc-parser-tests.
...
* gnu/packages/irc.scm (python-irc-parser-tests): New variable.
Change-Id: Iaffea626ed06e228562b3c92123d30c9712de7c3
2024-05-07 15:38:28 +01:00
4f4034bb46
gnu: Add go-git-sr-ht-emersion-go-sqlite3-fts5.
...
* gnu/packages/golang-xyz.scm (go-git-sr-ht-emersion-go-sqlite3-fts5):
New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Icb6f77b306ff5c8a816d8a42e90a1bf23115b38f
2024-05-07 15:38:28 +01:00
bb1beff54d
gnu: Add go-git-sr-ht-sircmpwn-go-bare.
...
* gnu/packages/golang-xyz.scm (go-git-sr-ht-sircmpwn-go-bare): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iea3ac2489549fe4cb1b1ce216a998c30c9f996d6
2024-05-07 15:38:28 +01:00
2799f6c6e1
gnu: go-github-com-mattn-go-sqlite3: Update to 1.14.22.
...
* gnu/packages/golang-xyz.scm (go-github-com-mattn-go-sqlite3): Update to 1.14.22.
Change-Id: I01bf397b7d74db812883994deb2c2249adf14d1f
2024-05-07 15:38:27 +01:00
bea3defe23
gnu: Add go-github-com-pires-go-proxyproto.
...
* gnu/packages/golang-xyz.scm (go-github-com-pires-go-proxyproto): New variable.
Change-Id: Iec8e8ead7e18cbbd9be00ec398d11e632e4b2ac4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 15:38:27 +01:00
e78fb8223f
gnu: Add go-nhooyr-io-websocket.
...
* gnu/packages/golang-web.scm (go-nhooyr-io-websocket): New variable.
Change-Id: Ifced88b4d916b8593e4b65022cf419c8ae18a769
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 15:38:27 +01:00
c9bbfc9f3c
gnu: Add go-github-com-msteinert-pam.
...
* gnu/packages/golang-xyz.scm (go-github-com-msteinert-pam): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Id84648d258d2f1c7f2c9902e80dccb06642d7787
2024-05-07 15:38:27 +01:00
d12456bebd
gnu: Add go-github-com-sherclockholmes-webpush-go.
...
* gnu/packages/golang-web.scm (go-github-com-sherclockholmes-webpush-go): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ida07915e1659b79353dd267991bcb615ee5cc837
2024-05-07 15:38:27 +01:00
223c531ec4
gnu: Add go-github-com-golang-jwt-jwt.
...
* gnu/packages/golang-crypto.scm (go-github-com-golang-jwt-jwt-v4): New variable.
(go-github-com-golang-jwt-jwt-v4): Inherit from go-github-com-golang-jwt-jwt.
Change-Id: I2382208434859b7a9b9a314930fa8769072964c7
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07 15:38:25 +01:00
014875b29e
gnu: psascan: Limit to 64-bit systems.
...
* gnu/packages/cpp.scm (psascan)[supported-systems]: New field.
Change-Id: I19eef41449a16b4440f3dd73cdb181c7c3383e84
2024-05-07 01:44:28 +03:00
51c711a328
gnu: bitmapperbs: Limit to x86_64-linux.
...
* gnu/packages/bioinformatics.scm (bitmapperbs)[supported-systems]: New
field.
Change-Id: I03484413e5af8e779fe0e5199e456eaab124e8b7
2024-05-07 01:31:20 +03:00
cc051064c5
gnu: grantlee: Fix build on some architectures.
...
* gnu/packages/qt.scm (grantlee)[source]: Add patch.
* gnu/packages/patches/grantlee-register-metaenumvariable.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: Iecef53baeb023a80139ac70b9caefcfa7b79a3c6
2024-05-07 00:43:24 +03:00
0a5929033f
gnu: minimap2: Fix make-flags.
...
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Adjust the
make-flags to contain actual build flags for all architectures.
Change-Id: I5b4077a25d6d46172ff566ceaa16629ebf066721
2024-05-06 23:53:04 +03:00
6571231f2d
gnu: minimap2: Update to 2.28.
...
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.28.
[arguments]: Adjust custom 'install phase to not delete non-existent
file. Remove trailing #t from phase.
Change-Id: Ie6cc21f2b761532f08967efea54d3a12b944f213
2024-05-06 23:42:22 +03:00
a4c0a58594
gnu: proteinortho: Add tunable property.
...
* gnu/packages/bioinformatics.scm (proteinortho)[properties]: Add
tunable? flag.
Change-Id: If59d5785c8c8e4aedb5b88479da6fba0e9754640
2024-05-06 23:16:57 +03:00
dd23efe020
gnu: proteinortho: Update to 6.3.2.
...
* gnu/packages/bioinformatics.scm (proteinortho): Update to 6.3.2.
[source]: Adjust snippet to also delete lapack source tarball.
[arguments]: Rewrite using g-expressions. Add flag to run tests
sequentially. Adjust make-flags for cross-compiling and to set PREFIX.
Delete 'configure and custom 'configure phase. Remove trailing #t from
phases.
Change-Id: I40249e5ac92c26223119b81b4677c08d5ab230e6
2024-05-06 23:16:56 +03:00
d967ffb367
gnu: python-http-client: Fix test suite.
...
* gnu/packages/python-web.scm (python-http-client)[arguments]: Add a
phase to adjust the tests to not be dependant on the current date.
Change-Id: I94f512c9b019173f6e15e04791dbfc662fc93c89
2024-05-06 23:16:56 +03:00
a9c89cd11b
gnu: r-lpsymphony: Fix building on some architectures.
...
* gnu/packages/bioconductor.scm (r-lpsymphony) [arguments]: When
building for aarch64-linux or riscv64-linux replace all the config.guess
and config.sub files with newer ones.
[native-inputs]: When building for aarch64-linux or riscv64-linux add
config.
Change-Id: Iaddda8c6d7330fb02bdd83733e7fa70b851a82f2
2024-05-06 23:16:55 +03:00
3053c40995
gnu: mouseloupe: Update the package style.
...
* gnu/packages/accessibility.scm (mouseloupe)[arguments]: Switch to
g-expressions.
Change-Id: I9af4433b2effbcbd9c0178ea3f02d81e202f4c05
2024-05-06 23:16:55 +03:00
2d5b779b45
gnu: mouseloupe: Don't hardcode building for i686.
...
* gnu/packages/accessibility.scm (mouseloupe)[source]: Add snippet to
remove flag from the Makefile explicitly building for i686.
Change-Id: Iec5a5002a51ff7f2be469f6815e6ff6166b32876
2024-05-06 23:16:54 +03:00
284938bb72
gnu: wolf-shaper: Add tunable property.
...
* gnu/packages/music.scm (wolf-shaper)[properties]: Add tunable? flag.
Change-Id: I32b26effaa18b814fcca8f4cd88b083969682a81
2024-05-06 23:16:54 +03:00
f4c954e314
gnu: wolf-shaper: Fix building on more architectures.
...
* gnu/packages/music.scm (wolf-shaper)[arguments]: Add make-flag to
disable optimizations.
Change-Id: I2976d1769324765df3f0aa8b636f528526bdfd78
2024-05-06 23:16:53 +03:00
5a69a52d74
gnu: solidity: Update to 0.8.25.
...
* gnu/packages/solidity.scm (solidity): Update to 0.8.25.
[arguments]: Add configure-flag to allow an older version of z3.
[inputs]: Replace fmt-8.0 with fmt.
Change-Id: I1501d16323566c066c58c1c4bbf90dd17a23f021
2024-05-06 23:16:53 +03:00
614bd4a777
gnu: solidity: Allow a newer version of jsoncpp.
...
* gnu/packages/solidity.scm (solidity)[arguments]: Add a phase to allow
newer versions of jsoncpp.
Change-Id: I4f7b5b3685f8d784da221ccb0eea1ba297e3e0b8
2024-05-06 23:16:53 +03:00
d3bfc94271
gnu: galera: Update to 26.4.18.
...
* gnu/packages/databases.scm (galera): Update to 26.4.18.
[inputs]: Move check from here ...
[native-inputs]: ... to here.
Change-Id: Iac2ce8e1ebbe0e4059b26b7e83afbdafea19641b
2024-05-06 23:16:52 +03:00
f55af58045
gnu: strongswan: Remove pre-generated files.
...
* gnu/packages/vpn.scm (strongswan)[source]: Add snippet to remove some
pre-generated files.
[native-inputs]: Add bison, flex, perl.
Change-Id: Ifc316a1c309f8687418455189457cee83b06bfa1
2024-05-06 23:16:52 +03:00
2423b0bb2d
gnu: strongswan: Fix building on non-x86 architectures.
...
* gnu/packages/vpn.scm (strongswan)[arguments]: When building for
not-x86 architectures disable aesni support. Also adjust the test suite
so we skip the RSA tests.
Change-Id: Idbc7bb229b83b0f43f3286b94fa4da077711c0ed
2024-05-06 23:16:51 +03:00
38733b5039
gnu: gnome-js-common: Fix build on some architectures.
...
* gnu/packages/gnome.scm (gnome-js-common)[arguemnts]: When building for
aarch64-linux or riscv64-linux replace the config.guess and config.sub
files.
[native-inputs]: When building for aarch64-linux or riscv64-linux add
config.
Change-Id: Ia27b0fec7d0b50e9e4ab7ea7329d390ddc482795
2024-05-06 23:16:51 +03:00
c6d99eb371
gnu: theorafile: Fix cross-compiling.
...
* gnu/packages/video.scm (theorafile)[arguments]: Use cc-for-target.
Change-Id: I191bd177263e57f1193fce1d360ba161726f39b9
2024-05-06 23:16:50 +03:00
ee926b19ad
gnu: theorafile: Use test-target.
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* gnu/packages/video.scm (theorafile)[arguments]: Add test-target.
Remove custom 'check phase.
Change-Id: Ia741bc7c202a418801672ffcf88bd7b8577c359e
2024-05-06 23:16:50 +03:00
9a19c50b9b
gnu: theorafile: Update to 0.0.0-2.ea5fd6d.
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* gnu/packages/video.scm (0.0.0-2.ea5fd6d): Update to 0.0.0-2.ea5fd6d.
[arguments]: Remove trailing #t from phases.
Change-Id: I5dc34627d3d3e264743fa65c480872da2182ada0
2024-05-06 23:16:49 +03:00
88a4a46ed4
gnu: elisa: Update to 23.08.5.
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* gnu/packages/kde-multimedia.scm (elisa): Update to 23.08.5.
[arguments]: Remove trailing #t from phases.
Change-Id: I4de0b34ce52baefeed5aaeb493fa54d14515fcef
2024-05-06 23:16:49 +03:00
ad330f7d08
gnu: rednotebook: Correctly wrap the binary.
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* gnu/packages/rednotebook.scm (rednotebook)[arguments]: Adjust the
'wrap-with-library-paths phase to use the correct webkitgtk input.
Remove trailing #t.
Change-Id: I3d245f279ca704ab34023a8977a2c6f1003302ab
2024-05-06 23:16:48 +03:00
af8ad9148f
gnu: libvisual-plugins: Reformat with 'guix style'.
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* gnu/packages/gstreamer.scm (libvisual-plugins): Reformat package using
'guix style'.
Change-Id: I91cb02b22bc50c71ad314d2a48207a77e3700a41
2024-05-06 23:16:48 +03:00
a2f81c1b9d
gnu: libvisual-plugins: Build with librsvg-for-system.
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* gnu/packages/gstreamer.scm (libvisual-plugins)[inputs]: Replace
librsvg with librsvg-for-system.
Change-Id: Ie4199e6f52236dfae086b1425607b6e0f1f9129b
2024-05-06 23:16:47 +03:00
f1efd142b6
gnu: libvisual-plugins: Disable oinksie plugin.
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* gnu/packages/gstreamer.scm (libvisual-plugins)[arguments]: Add a
configure-flag to disable the oinksie plugin.
Change-Id: I6181384c715eeeceba81d196960e4cd0148cc55a
2024-05-06 23:16:47 +03:00
2b6ca9db79
gnu: darkice: Fix build.
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* gnu/packages/audio.scm (darkice)[arguments]: Add a make-flag to use an
earlier C++ standard.
Change-Id: I2b7be09be9deb4637e996a9a697e31efed5c5508
2024-05-06 23:16:46 +03:00
d5d2963826
gnu: wmfire: Fix build.
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* gnu/packages/gnustep.scm (wmfire)[source]: Add patch.
* gnu/packages/patches/wmfire-dont-inline-draw-fire.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
Change-Id: I3e937c5e9dbd8a5e2eebfd92213407d9477a47ab
2024-05-06 23:16:46 +03:00
ae1873558c
gnu: varnish: Fix build on i686-linux.
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* gnu/packages/web.scm (varnish)[arguments]: When building for
i686-linux add a make-flag to adjust the CFLAGS.
Change-Id: I9dbd9566de33f2ad7445e3a7ee8bc2d01e430cc9
2024-05-06 23:16:45 +03:00
600860e8ac
gnu: varnish-modules: Update to 0.22.0.
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* gnu/packages/web.scm (varnish-module): Update to 0.22.0.
Change-Id: I0bd60aed1d4243887a6501f4561ec5c83f1a3c06
2024-05-06 23:16:45 +03:00
f14513b660
gnu: graphene: Fix build on armhf-linux.
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* gnu/packages/gtk.scm (graphene)[arguments]: When building for
armhf-linux add a configure-flag to disable neon optimizations.
Change-Id: I42b412d3f7536180e959e268b68f2c292edda749
2024-05-06 23:16:31 +03:00
c5db054e64
gnu: guile-jwt: Update to 0.3.0.
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* gnu/packages/guile-xyz.scm (guile-jwt): Update to 0.3.0.
[propagated-inputs]: Add guile-gcrypt.
Change-Id: I694b63437f51121dd3440ccb32ce279583596586
2024-05-06 21:56:59 +02:00
752c089b4a
Revert "gnu: pcsc-lite: Update to 2.1.0."
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This reverts commit a8f0e8a31d
2024-05-06 19:01:38 +02:00
28e74f49fe
Revert "gnu: hwdata: Update to 0.378."
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This reverts commit 7ed5a336bd
2024-05-06 14:29:25 +02:00
f89d06d13b
gnu: Add emacs-devicetree-ts-mode.
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* gnu/packages/emacs-xyz.scm (emacs-devicetree-ts-mode): New variable.
Update copyright.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I6ab5a52d1aa045794f72edd3c810255f2e432038
2024-05-06 14:14:31 +02:00
03de08d3b6
gnu: Add tree-sitter-devicetree.
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* gnu/packages/tree-sitter.scm (tree-sitter-devicetree): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: Ia73316fa422be84a79e16f2fa40371853ae83570
2024-05-06 14:14:03 +02:00
a2d4a64d04
gnu: emacs-xyz: Add emacs-xref-union.
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* gnu/packages/emacs-xyz.scm (emacs-xref-union): New variable.
Change-Id: Idea12ce6869f5244a873e933cf1135db284d2391
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 14:12:24 +02:00
fa6716e080
gnu: waybar: Update to 0.10.2.
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* gnu/packages/wm.scm (waybar): Update to 0.10.2.
0.10.1 changelog: https://github.com/Alexays/Waybar/releases/tag/0.10.1 .
0.10.2 changelog: https://github.com/Alexays/Waybar/releases/tag/0.10.2 .
The meson build has been stable for these two releases, no new/removed
dependencies.
Change-Id: I2359a2111a35041860172232722e6d91a1ff35e7
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:48:38 +02:00
1cb70ce152
gnu: wxmaxima: Update to 24.02.2.
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* gnu/packages/maths.scm (wxmaxima): Update to 24.02.2.
Change-Id: I33cd6a3230a7d1672aadf942ad0b089dfa8603b0
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:47:25 +02:00
29db98ec67
gnu: tenacity: Update to 1.3.1.
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* gnu/packages/audio.scm (tenacity): Update to 1.3.1.
Change-Id: Id06fb3e9283524341f30d961854d8e6f6df1543e
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:46:59 +02:00
2c299b338a
gnu: retroarch: Fix OpenGL core and Vulkan drivers.
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* gnu/packages/emulators.scm (retroarch)[arguments]: Ignore check result for
HAVE_GLSLANG_HLSL in the configure phase.
Change-Id: I3ba110b834acca25ada0e680a6bcb879b4db96f4
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:46:26 +02:00
81743c54a3
gnu: qutebrowser: Add python-tldextract to inputs.
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* gnu/packages/web-browsers.scm (qutebrowser)[inputs]: Add python-tldextract.
Change-Id: I2c1cf1c71cf0e6ba01711d36fd38d3b09e242caa
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:45:30 +02:00
d6a39f3e89
gnu: highlight: Update to 4.11.
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* gnu/packages/pretty-print.scm (highlight): Update to 4.11.
[source]: Switch to git-fetch.
[home-page]: Switch to html page.
[arguments]<#:make-flags>: Use #$output replace %output.
<#:phases>: Use ‘this-package-input‘ to find lua and perl.
Reviewed-by: Dale Mellor <guix-devel-0brg6a@rdmp.org>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I0c402fcea5708c4882b52309b3e072301f0a5614
2024-05-06 13:44:24 +02:00
7ed5a336bd
gnu: hwdata: Update to 0.378.
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* gnu/packages/pciutils.scm (hwdata): Update to 0.378.
Reviewed-by: Dale Mellor <guix-devel-0brg6a@rdmp.org>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I7200477ce06280913802e94cd5ef6d9639b8de9f
2024-05-06 13:42:50 +02:00
a8f0e8a31d
gnu: pcsc-lite: Update to 2.1.0.
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* gnu/packages/security-token.scm (pcsc-lite): Update to 2.1.0.
Reviewed-by: Christina O'Donnell <cdo@mutix.org>
Change-Id: I133fd056afb84259cf5cb1f3e9c664ac336e50b9
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-06 13:41:57 +02:00
3bc4f32058
gnu: musescore: Propagate alsa-plugins pulseaudio to runtime.
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In order for libasound_module_conf_pulse.so to be present at runtime of
MuseScore the alsa-plugins output "pulseaudio" must be present.
Playback of scores was not working, at least on a foreign distro like
Debian. When running on Debian, MuseScore complained that
libasound_module_conf_pulse.so was missing at startup. This patch was
tested on Debian 12 and fixed the issue.
* gnu/packages/music.scm (musescore): Propagate alsa-plugins pulseaudio to runtime
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: I4e2db8e45fdf33987817cef41bcd336526b16d90
2024-05-06 13:41:11 +02:00
20cb45a502
gnu: leocad: Update to 23.03
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* gnu/packages/lego.scm (leocad): Update to 23.03
Change-Id: I0fc566e0325aa992440cf4f895b5780df7e49632
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-05-06 13:26:16 +02:00
e4090a558f
gnu: msmtp: Update to 1.8.26.
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* gnu/packages/mail.scm (msmtp): Update to 1.8.26.
Change-Id: I85eea2d64944a3e1b7b4ed3022772190ee5787c2
2024-05-06 13:24:42 +02:00
bdba291a72
gnu: emacs-telega: Update to 0.8.255.
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* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.8.255.
* gnu/packages/patches/emacs-telega-path-placeholder.patch: Update patch.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I8cec5a5170318f0ae99116a98afcefe31203b585
2024-05-06 13:22:29 +02:00
f736a784e1
gnu: trust4: Update to 1.1.0.
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* gnu/packages/bioinformatics.scm (trust4): Update to 1.1.0.
Change-Id: I4780038a5db110514e27f07a576166def4063da7
2024-05-06 12:36:53 +02:00
709e87caff
gnu: Add trust4.
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gnu/packages/bioinformatics.scm (trust4): New variable.
Change-Id: I6a0fd339a0f761a473f50c7da74c26cfac7b1caf
2024-05-06 11:47:05 +02:00
57769fb0b3
gnu: Add r-seraster.
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* gnu/packages/bioinformatics.scm (r-seraster): New variable.
Change-Id: I9f9fd24a9aa563f7c74154e613b85dee46bdcf79
2024-05-06 11:38:17 +02:00
fc51a747fa
gnu: Add r-rearrr.
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* gnu/packages/cran.scm (r-rearrr): New variable.
Change-Id: I41e06b24e565a4070f570b7fd5c656f185aacfa9
2024-05-06 11:38:08 +02:00
64fcc49dc5
gnu: Add r-metadeconfoundr.
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* gnu/packages/bioinformatics.scm (r-metadeconfoundr): New variable.
Change-Id: I733fb464d2a3c7fd1335826be9f23e2610e6fd60
2024-05-06 11:26:54 +02:00
2c52bbd16d
gnu: Add r-detectseparation.
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* gnu/packages/cran.scm (r-detectseparation): New variable.
Change-Id: I6c795719c22a6ff929785e799f749ce053e83fbe
2024-05-06 11:24:57 +02:00
458cd1e1d8
gnu: Add r-roi-plugin-lpsolve.
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* gnu/packages/cran.scm (r-roi-plugin-lpsolve): New variable.
Change-Id: Ia3f47ba0b414ecd9273c101977ec8d14916fa656
2024-05-06 11:24:56 +02:00
112ecacba3
gnu: Add r-roi.
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* gnu/packages/cran.scm (r-roi): New variable.
Change-Id: I58cbb4be238a5cc9f861ee9dafea03a133f7c0f1
2024-05-06 11:24:56 +02:00
Ricardo Wurmus
Artyom V. Poptsov
Sharlatan Hellseher
Jesse Eisses
Efraim Flashner
Nicolas Goaziou
Aleksandr Vityazev
Daniel Ziltener
Picnoir
Andy Tai
宋文武
Wilko Meyer
chris
Arjan Adriaanse
Rovanion Luckey
James Smith
Timotej Lazar
Sergey Trofimov
Mădălin Ionel Patrașcu