aca2defe01
packages: 'modify-inputs' preserves and introduces input labels if needed.
...
Fixes a bug whereby, in an expression like this:
(modify-inputs lst
(delete ...)
(prepend ...))
the 'delete' clause would have no effect because 'prepend' would pass it
a label-less input list.
* guix/packages.scm (inputs-sans-labels): Remove.
(modify-inputs): In the 'prepend' and 'append' cases, preserve/add input
labels instead of removing them.
2021-12-13 17:48:25 +01:00
148a03b971
gnu: binutils@2.33: Remove non-applicable patches.
...
* gnu/packages/base.scm (binutils-2.33)[source]: Add empty 'patches' field.
2021-12-13 13:58:31 +01:00
0b1f5d2477
gnu: python-aws-xray-sdk: Set PYTHONPATH when running tests.
...
* gnu/packages/python-web.scm (python-aws-xray-sdk)[arguments]: Check:
Set PYTHONPATH.
2021-12-13 13:55:17 +01:00
063dfc5636
gnu: python-jsonpickle: Update to 1.5.2.
...
This brings support for NumPy 1.20+, which we need.
* gnu/packages/python-web.scm (python-jsonpickle): Update to 1.5.2.
2021-12-13 13:54:38 +01:00
90bee69fca
gnu: python-jose: Add missing dependency.
...
* gnu/packages/python-web.scm (python-jose)[propagated-inputs]: Add
PYTHON-ECDSA.
2021-12-13 13:54:15 +01:00
5f32468acf
gnu: Add r-chromvarmotifs.
...
* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-13 13:38:27 +01:00
1052ae5f03
Merge branch 'master' into core-updates-frozen
2021-12-13 11:49:15 +01:00
788f56b4dc
doc: Add missing closing paren.
...
* doc/guix.texi (Desktop Services): Add missing closing paren in example.
2021-12-13 11:31:53 +01:00
c946e1464d
doc: Handle ' ' when syntax-highlighting HTML.
...
* doc/build.scm (syntax-highlighted-html)[build](entity->string): Handle " ".
2021-12-13 11:31:53 +01:00
cf2251b9f7
gnu: Add r-sanssouci.
...
* gnu/packages/bioconductor.scm (r-sanssouci): New variable.
2021-12-13 11:17:43 +01:00
73d2fb94e3
gnu: Add r-isoformswitchanalyzer.
...
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
2021-12-13 10:54:16 +01:00
495646aa73
gnu: Add r-drimseq.
...
* gnu/packages/bioconductor.scm (r-drimseq): New variable.
2021-12-13 10:54:05 +01:00
531a69ecb6
gnu: Add r-dearseq.
...
* gnu/packages/bioconductor.scm (r-dearseq): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-13 09:50:58 +01:00
efd4d36a28
gnu: linux-libre 4.4: Update to 4.4.294.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.294.
(linux-libre-4.4-pristine-source): Update hash.
2021-12-12 23:14:01 -05:00
912db36d27
gnu: linux-libre 4.9: Update to 4.9.292.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.292.
(linux-libre-4.9-pristine-source): Update hash.
2021-12-12 23:14:01 -05:00
a9dfc3781a
gnu: linux-libre 4.14: Update to 4.14.257.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.257.
(linux-libre-4.14-pristine-source): Update hash.
2021-12-12 23:14:01 -05:00
56778b40a3
gnu: linux-libre 4.19: Update to 4.19.220.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.220.
(linux-libre-4.19-pristine-source): Update hash.
2021-12-12 23:14:01 -05:00
ef8c464e17
gnu: linux-libre 5.4: Update to 5.4.164.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.164.
(linux-libre-5.4-pristine-source): Update hash.
2021-12-12 23:14:01 -05:00
50c529c574
gnu: linux-libre 5.10: Update to 5.10.84.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.84.
(linux-libre-5.10-pristine-source): Update hash.
2021-12-12 23:14:00 -05:00
e49f9f68dc
gnu: linux-libre: Update to 5.15.7.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.7.
(linux-libre-5.15-pristine-source): Update hash.
2021-12-12 23:13:57 -05:00
c8609493ba
news: Add entry about 'static-networking-service-type'.
...
* etc/news.scm: Add entry.
2021-12-13 00:09:33 +01:00
869d69ad32
gnu: gaupol: Don't attempt to compile bytecode twice.
...
* gnu/packages/video.scm (gaupol)[arguments]: Disable needless compilation
with a substitution. While here, remove trailing #t's.
2021-12-12 23:26:02 +01:00
dd5851e088
gnu: mps-youtube: Disable sanity check.
...
* gnu/packages/video.scm (mps-youtube)[arguments]: Add #:phases.
2021-12-12 23:26:02 +01:00
2ac8a13a6a
gnu: smplayer: Remove reference to %outputs.
...
...which no longer exists in qt-build-system.
* gnu/packages/video.scm (smplayer)[arguments]: Turn into gexp. Use #$OUTPUT
instead of %OUTPUTS. Remove trailing #true's.
2021-12-12 23:26:01 +01:00
9896e828ca
gnu: ruby-asciidoctor-pdf: Update to 1.6.1.
...
* gnu/packages/ruby.scm (ruby-asciidoctor-pdf): Update to 1.6.1.
[arguments]: Remove trailing #t's.
2021-12-12 23:26:01 +01:00
539031ed86
gnu: ruby-rouge: Update to 3.26.1.
...
* gnu/packages/ruby.scm (ruby-rouge): Update to 3.26.1.
2021-12-12 23:26:01 +01:00
923c78619c
gnu: ruby-loofah: Update to 2.13.0.
...
* gnu/packages/ruby.scm (ruby-loofah): Update to 2.13.0.
[source]: Switch to GIT-FETCH.
[arguments]: Remove.
[native-inputs]: Add RUBY-HOE-MARKDOWN.
2021-12-12 23:26:01 +01:00
78bf278a80
gnu: Add ruby-hoe-markdown.
...
* gnu/packages/ruby.scm (ruby-hoe-markdown): New variable.
2021-12-12 23:26:01 +01:00
a3b25dbfa6
gnu: ruby-nokogiri: Update to 1.12.5.
...
* gnu/packages/ruby.scm (ruby-nokogiri-1.10): New variable.
(ruby-nokogiri): Inherit from it. Update to 1.12.5.
(ruby-nokogiri-diff)[propagated-inputs]: Change from RUBY-NOKOGIRI to
RUBY-NOKOGIRI-1.10.
2021-12-12 23:26:01 +01:00
f73ba627ab
tests: Replace uses of deprecated 'static-networking-service'.
...
* gnu/tests/ganeti.scm (%ganeti-os): Replace call to
'static-networking-service' by instantiating
STATIC-NETWORKING-SERVICE-TYPE.
* gnu/tests/networking.scm (%test-static-networking)
(%openvswitch-os, %dhcpd-os): Likewise.
2021-12-12 23:20:50 +01:00
5967aee398
services: Define '%loopback-static-networking'.
...
* gnu/services/base.scm (%loopback-static-networking): New variable.
(%base-services): Use it.
* gnu/system/hurd.scm (%base-services/hurd): Use it.
* gnu/system/install.scm (%installation-services): Use it.
* doc/guix.texi (Networking Setup): Document it.
2021-12-12 23:20:50 +01:00
1644f4f1f8
services: Define '%qemu-static-networking'.
...
* gnu/services/base.scm (%qemu-static-networking): New variable.
* gnu/system/hurd.scm (%base-services/hurd): Use it.
* doc/guix.texi (Networking Setup): Document it.
2021-12-12 23:20:49 +01:00
223f1b1eb3
services: static-networking: Change interface to mimic netlink.
...
* gnu/services/base.scm (<static-networking>)[interface, ip, netmask]
[gateway]: Remove.
[addresses, links, routes]: New fields.
[requirement]: Default to '(udev).
(<network-address>, <network-link>, <network-route>): New record types.
(ensure-no-separate-netmask, %ensure-no-separate-netmask): Remove.
(ipv6-address?, cidr->netmask, ip+netmask->cidr)
(network-set-up/hurd, network-tear-down/hurd)
(network-set-up/linux, network-tear-down/linux)
(static-networking->hurd-pfinet-options): New procedures.
(static-networking-shepherd-service): New procedure.
(static-networking-shepherd-services): Rewrite in terms of the above.
(static-networking-service): Deprecate. Adjust to new
'static-networking' API.
(%base-services): Likewise.
* gnu/system/install.scm (%installation-services): Likewise.
* gnu/system/hurd.scm (%base-services/hurd): Likewise, and separate
'loopback' from 'networking'.
* gnu/build/hurd-boot.scm (set-hurd-device-translators): Remove
"servers/socket/2".
* gnu/tests/networking.scm (run-openvswitch-test)["networking has
started on ovs0"]: Check for 'networking instead of 'networking-ovs0,
which is no longer provided.
* doc/guix.texi (Networking Setup): Document the new interface. Remove
documentation of 'static-networking-service'.
(Virtualization Services): Change Ganeti example to use the new
interface.
2021-12-12 23:20:49 +01:00
39e3b4b7ce
services: secret-service: Turn into a Shepherd service.
...
* gnu/services/virtualization.scm (secret-service-activation): Remove.
(secret-service-shepherd-services): New procedure.
(secret-service-type)[extensions]: Remove ACTIVATION-SERVICE-TYPE
extension. Add SHEPHERD-ROOT-SERVICE-TYPE and
USER-PROCESSES-SERVICE-TYPE extensions.
* gnu/build/secret-service.scm (delete-file*): New procedure.
(secret-service-receive-secrets): Use it.
2021-12-12 23:20:49 +01:00
0cc742b261
services: static-networking: Use Guile-Netlink on GNU/Linux.
...
* gnu/services/base.scm (static-networking-shepherd-service): Define
'set-up-via-ioctl', 'tear-down-via-ioctl', 'set-up-via-netlink',
'tear-down-via-netlink', and 'helpers' and use them in 'start' and
'stop'. Add (ip *) modules to 'modules'.
2021-12-12 23:20:49 +01:00
1759292c8b
gnu: guile-netlink: Allow cross-compilation.
...
* gnu/packages/guile-xyz.scm (guile-netlink)[arguments]: Remove,
since #:tests? #f is unnecessary.
[native-inputs]: Add GUILE-3.0.
2021-12-12 23:20:49 +01:00
a4d33fef31
doc: Add new "Networking Setup" node for the main setup options.
...
This should make it easier to find how to get started setting up
networking.
* doc/guix.texi (Networking Setup): New section.
(Networking Services): Remove 'static-networking-service',
'dhcp-client-service-type', 'network-manager-service-type',
'connman-service-type', 'wicd-service', 'modem-manager-service-type',
'usb-modeswitch-service-type', and 'wpa-supplicant-service-type'.
2021-12-12 23:20:49 +01:00
33c498b9ee
tests: openvswitch: Check whether ovs0 is up.
...
* gnu/tests/networking.scm (run-openvswitch-test)["ovs0 is up"]: New test.
2021-12-12 23:20:49 +01:00
72f140c253
tests: Add 'static-networking' test.
...
* gnu/tests/networking.scm (run-static-networking-test): New procedure.
(%test-static-networking): New variable.
2021-12-12 23:20:48 +01:00
867dcbe3a1
gnu: python-pyflakes@2.2: Adjust tests for Python 3.9.
...
* gnu/packages/patches/python-pyflakes-test-location.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-pyflakes-2.2): Use it.
2021-12-12 22:16:33 +01:00
9155566392
gnu: sundials: Add 'release-monitoring-url' property.
...
* gnu/packages/maths.scm (sundials)[properties]: New field.
2021-12-12 22:16:32 +01:00
951a4db989
gnu: sundials: Build with '-fcommon'.
...
* gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS".
2021-12-12 22:16:32 +01:00
9b24cd3b8e
gnu: guile-dsv: Update to 0.5.0
...
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.5.0.
2021-12-12 19:49:55 +01:00
604880ae22
progress: Rate limit drawing in the progress-reporter/bar.
...
This helps smooth the output in cases where the bar is updated very quickly,
for example in guix weather where it's computing derivations.
* guix/progress.scm (progress-reporter/bar): Wrap the drawing code with the
rate-limited procedure.
2021-12-12 14:12:15 +00:00
7317c6e739
gnu: Change source file-name suffix in rust packages.
...
* gnu/packages/rust-apps.scm (rust-cbindgen)[source]: Change source
file-name suffix from '.crate' to '.tar.gz'.
* gnu/packages/crates-graphics.scm (rust-ansi-term-0.12): Likewise.
(rust-ansi-term-0.11): Likewise.
(rust-rgb-0.8): Likewise.
* gnu/packages/crates-io.scm (rust-adler32-1): Likewise.
(rust-antidote-1): Likewise.
(rust-atty-0.2): Likewise.
(rust-autocfg-0.1): Likewise.
(rust-backtrace-sys-0.1): Likewise.
(rust-base-x-0.2): Likewise.
(rust-bencher-0.1): Likewise.
(rust-bitflags-1): Likewise.
(rust-blas-sys-0.7): Likewise.
(rust-cargon-0.0): Likewise.
(rust-cblas-sys-0.1): Likewise.
(rust-cc-1): Likewise.
(rust-cfg-if-0.1): Likewise.
(rust-clang-sys-0.26): Likewise.
(rust-clap-2): Likewise.
(rust-clicolors-control-1): Likewise.
(rust-cloudabi-0.1): Likewise.
(rust-cloudabi-0.0): Likewise.
(rust-cmake-0.1): Likewise.
(rust-compiler-builtins-0.1): Likewise.
(rust-constant-time-eq-0.1): Likewise.
(rust-core-foundation-sys-0.6): Likewise.
(rust-data-encoding-2): Likewise.
(rust-defmac-0.2): Likewise.
(rust-defmac-0.1): Likewise.
(rust-dirs-1): Likewise.
(rust-discard-1): Likewise.
(rust-doc-comment-0.3): Likewise.
(rust-dtoa-0.4): Likewise.
(rust-dtoa-0.2): Likewise.
(rust-fallible-iterator-0.2): Likewise.
(rust-filetime-0.2): Likewise.
(rust-findshlibs-0.5): Likewise.
(rust-fixedbitset-0.2): Likewise.
(rust-fixedbitset-0.1): Likewise.
(rust-fnv-1): Likewise.
(rust-foreign-types-shared-0.2): Likewise.
(rust-fs-extra-1): Likewise.
(rust-fuchsia-cprng-0.1): Likewise.
(rust-fuchsia-zircon-0.3): Likewise.
(rust-fuchsia-zircon-sys-0.3): Likewise.
(rust-futures-0.1): Likewise.
(rust-futures-core-preview-0.3): Likewise.
(rust-futures-cpupool-0.1): Likewise.
(rust-futures-io-preview-0.3): Likewise.
(rust-futures-sink-preview-0.3): Likewise.
(rust-getopts-0.2): Likewise.
(rust-glob-0.3): Likewise.
(rust-glob-0.2): Likewise.
(rust-heapsize-0.4): Likewise.
(rust-heapsize-0.3): Likewise.
(rust-heapsize-plugin-0.1): Likewise.
(rust-heck-0.3): Likewise.
(rust-hex-0.3): Likewise.
(rust-hex-0.2): Likewise.
(rust-hostname-0.1): Likewise.
(rust-iovec-0.1): Likewise.
(rust-itoa-0.4): Likewise.
(rust-itoa-0.1): Likewise.
(rust-json-0.11): Likewise.
(rust-kernel32-sys-0.2): Likewise.
(rust-language-tags-0.2): Likewise.
(rust-lazy-static-1): Likewise.
(rust-libloading-0.5): Likewise.
(rust-lock-api-0.1): Likewise.
(rust-log-0.4): Likewise.
(rust-maplit-1): Likewise.
(rust-matches-0.1): Likewise.
(rust-matrixmultiply-0.2): Likewise.
(rust-matrixmultiply-0.1): Likewise.
(rust-md5-0.7): Likewise.
(rust-md5-0.6): Likewise.
(rust-memmap-0.7): Likewise.
(rust-memmap-0.6): Likewise.
(rust-mime-0.3): Likewise.
(rust-miniz-oxide-0.3): Likewise.
(rust-miniz-sys-0.1): Likewise.
(rust-miow-0.3): Likewise.
(rust-miow-0.2): Likewise.
(rust-modifier-0.1): Likewise.
(rust-net2-0.2): Likewise.
(rust-nodrop-0.1): Likewise.
(rust-nodrop-union-0.1): Likewise.
(rust-num-traits-0.1): Likewise.
(rust-numtoa-0.1): Likewise.
(rust-openssl-probe-0.1): Likewise.
(rust-owning-ref-0.4): Likewise.
(rust-parity-wasm-0.40): Likewise.
(rust-peeking-take-while-0.1): Likewise.
(rust-percent-encoding-2): Likewise.
(rust-percent-encoding-1): Likewise.
(rust-permutohedron-0.2): Likewise.
(rust-pico-sys-0.0): Likewise.
(rust-pkg-config-0.3): Likewise.
(rust-plain-0.2): Likewise.
(rust-plugin-0.2): Likewise.
(rust-pocket-resources-0.3): Likewise.
(rust-ppv-lite86-0.2): Likewise.
(rust-proc-macro2-1): Likewise.
(rust-quick-error-2): Likewise.
(rust-quick-error-1): Likewise.
(rust-quote-1): Likewise.
(rust-rand-0.7): Likewise.
(rust-rand-0.6): Likewise.
(rust-rand-0.3): Likewise.
(rust-rand-chacha-0.1): Likewise.
(rust-rand-core-0.4): Likewise.
(rust-rand-core-0.3): Likewise.
(rust-rand-hc-0.2): Likewise.
(rust-rand-hc-0.1): Likewise.
(rust-rand-isaac-0.1): Likewise.
(rust-rand-jitter-0.1): Likewise.
(rust-rand-os-0.1): Likewise.
(rust-rand-pcg-0.3): Likewise.
(rust-rand-pcg-0.2): Likewise.
(rust-rand-pcg-0.1): Likewise.
(rust-rand-xorshift-0.1): Likewise.
(rust-rawpointer-0.2): Likewise.
(rust-rawpointer-0.1): Likewise.
(rust-rdrand-0.4): Likewise.
(rust-redox-syscall-0.1): Likewise.
(rust-redox-termios-0.1): Likewise.
(rust-resolv-conf-0.6): Likewise.
(rust-rustc-demangle-0.1): Likewise.
(rust-rustc-serialize-0.3): Likewise.
(rust-rustc-std-workspace-core-1): Likewise.
(rust-ryu-1): Likewise.
(rust-safemem-0.3): Likewise.
(rust-same-file-1): Likewise.
(rust-schannel-0.1): Likewise.
(rust-scoped-threadpool-0.1): Likewise.
(rust-scoped-tls-1): Likewise.
(rust-scoped-tls-0.1): Likewise.
(rust-scopeguard-1): Likewise.
(rust-scopeguard-0.3): Likewise.
(rust-security-framework-sys-0.3): Likewise.
(rust-semver-parser-0.9): Likewise.
(rust-semver-parser-0.7): Likewise.
(rust-serde-derive-1): Likewise.
(rust-shlex-1): Likewise.
(rust-shlex-0.1): Likewise.
(rust-slab-0.4): Likewise.
(rust-socket2-0.3): Likewise.
(rust-sourcefile-0.1): Likewise.
(rust-spin-0.5): Likewise.
(rust-stacker-0.1): Likewise.
(rust-static-assertions-1): Likewise.
(rust-static-assertions-0.3): Likewise.
(rust-stdweb-internal-runtime-0.1): Likewise.
(rust-stdweb-internal-test-macro-0.1): Likewise.
(rust-streaming-stats-0.2): Likewise.
(rust-strsim-0.9): Likewise.
(rust-strsim-0.8): Likewise.
(rust-synstructure-test-traits-0.1): Likewise.
(rust-tar-0.4): Likewise.
(rust-tempdir-0.3): Likewise.
(rust-tempfile-3): Likewise.
(rust-term-0.4): Likewise.
(rust-term-0.2): Likewise.
(rust-termcolor-1): Likewise.
(rust-termion-1): Likewise.
(rust-termios-0.3): Likewise.
(rust-thread-id-3): Likewise.
(rust-thread-local-1): Likewise.
(rust-thread-local-0.3): Likewise.
(rust-threadpool-1): Likewise.
(rust-time-0.1): Likewise.
(rust-tokio-mock-task-0.1): Likewise.
(rust-toml-0.5): Likewise.
(rust-tracing-core-0.1): Likewise.
(rust-traitobject-0.1): Likewise.
(rust-try-from-0.3): Likewise.
(rust-try-lock-0.2): Likewise.
(rust-typeable-0.1): Likewise.
(rust-typemap-0.3): Likewise.
(rust-typenum-1): Likewise.
(rust-ucd-trie-0.1): Likewise.
(rust-ucd-util-0.1): Likewise.
(rust-unicode-xid-0.2): Likewise.
(rust-unicode-xid-0.1): Likewise.
(rust-unreachable-1): Likewise.
(rust-unsafe-any-0.4): Likewise.
(rust-untrusted-0.7): Likewise.
(rust-vcpkg-0.2): Likewise.
(rust-vec-map-0.8): Likewise.
(rust-version-check-0.9): Likewise.
(rust-version-check-0.1): Likewise.
(rust-void-1): Likewise.
(rust-wasi-0.5): Likewise.
(rust-wasm-bindgen-shared-0.2): Likewise.
(rust-wasm-bindgen-test-macro-0.2): Likewise.
(rust-widestring-0.4): Likewise.
(rust-winapi-0.3): Likewise.
(rust-winapi-0.2): Likewise.
(rust-winapi-build-0.1): Likewise.
(rust-winapi-util-0.1): Likewise.
(rust-wincolor-1): Likewise.
(rust-winutil-0.1): Likewise.
(rust-ws2-32-sys-0.2): Likewise.
(rust-xattr-0.2): Likewise.
(rust-xdg-2): Likewise.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-12 15:19:00 +02:00
c89940a43a
gnu: Use librsvg-bootstrap.
...
* gnu/packages/emacs.scm (emacs)[inputs]: Use librsvg-bootstrap.
* gnu/pacakges/gtk.scm (gtk+-2, gtk+)[propagated-inputs]: Same.
2021-12-12 15:19:00 +02:00
801f1a7c29
gnu: Add librsvg-bootstrap.
...
* gnu/packages/gnome.scm (librsvg-bootstrap): New variable.
2021-12-12 15:18:57 +02:00
8226771a33
gnu: go-1.14: Fix building on some platforms.
...
* gnu/packages/golang.scm (go-1.14)[arguments]: In custom 'prebuild
phase also search for loader without 'linux' in the string. In custom
'build phase set the GOCACHE directory.
[native-inputs]: On systems which don't have support in go-1.4 use
gccgo-10 instead.
2021-12-12 14:25:45 +02:00
492dac2fb0
gnu: python-patsy: Update to 0.5.2.
...
* gnu/packages/statistics.scm (python-patsy): Update to 0.5.2.
[arguments]: Run tests conditionally; run tests with pytest.
[native-inputs]: Replace python-nose with python-pytest.
2021-12-12 12:41:54 +01:00
3fc12128c2
gnu: remmina: Build with libsoup 2.
...
* gnu/packages/vnc.scm (remmina)[inputs]: Replace libsoup with
libsoup-minimal-2.
2021-12-12 12:41:54 +01:00
Ludovic Courtès
Mădălin Ionel Patrașcu
Ricardo Wurmus
Marcel Schilling
Leo Famulari
Marius Bakke
Artyom V. Poptsov
Christopher Baines
Z572
Efraim Flashner