c373223e63
gnu: Add r-graphite.
...
* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18 15:29:07 +01:00
ff1146b9b1
gnu: Add r-curatedtcgadata.
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* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18 15:29:07 +01:00
6f15ea2415
gnu: Add r-reactome-db.
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* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18 15:29:07 +01:00
29fd736a66
gnu: Add r-biobroom.
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* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17 20:02:18 +01:00
48bcbef07a
gnu: Add r-bioassayr.
...
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17 20:02:18 +01:00
991554fc92
gnu: Add r-chemminer.
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* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17 20:02:18 +01:00
d38775b13f
gnu: Add r-bigpint.
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* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17 20:02:18 +01:00
820373dbc8
gnu: Add r-bigmemoryextras.
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* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17 20:02:18 +01:00
6ca6f8663b
gnu: Add r-biggr.
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* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17 20:02:17 +01:00
5aef09bd0e
gnu: Add r-hyperdraw.
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* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17 20:02:17 +01:00
75a8bb3185
gnu: Add r-hypergraph.
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* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17 20:02:17 +01:00
e823337c6e
gnu: Add r-rsbml.
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* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17 20:02:17 +01:00
40fe63ad8a
gnu: Add r-bifet.
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* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17 20:02:17 +01:00
de9374b73c
gnu: Add r-bicare.
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* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17 20:02:17 +01:00
6bd50acf41
gnu: Add r-bhc.
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* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17 20:02:16 +01:00
75eb1149f3
gnu: Add r-bgx.
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* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17 20:02:16 +01:00
d11d6feafa
gnu: Add r-bgmix.
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* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17 20:02:16 +01:00
6e10ac0780
gnu: r-destiny: Update to 3.0.0.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
2019-12-15 15:39:13 +01:00
b4ee414880
gnu: r-siggenes: Update to 1.60.0.
...
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
2019-12-15 15:39:13 +01:00
4efdac562b
gnu: r-bumphunter: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
2019-12-15 15:39:13 +01:00
dfd4287cba
gnu: r-minfi: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
2019-12-15 15:39:13 +01:00
b57cffb974
gnu: r-methylumi: Update to 2.32.0.
...
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
2019-12-15 15:39:13 +01:00
8f7bc872e1
gnu: r-lumi: Update to 2.38.0.
...
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
2019-12-15 15:39:13 +01:00
a2877d6970
gnu: r-linnorm: Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
2019-12-15 15:39:12 +01:00
1b890c3231
gnu: r-ioniser: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
2019-12-15 15:39:12 +01:00
a18f325e0a
gnu: r-triform: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
2019-12-15 15:39:12 +01:00
9b72bbf784
gnu: r-varianttools: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
2019-12-15 15:39:12 +01:00
9f218627d6
gnu: r-heatplus: Update to 2.32.0.
...
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
2019-12-15 15:39:12 +01:00
c245ec3d49
gnu: r-gosemsim: Update to 2.12.0.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
2019-12-15 15:39:12 +01:00
5ed767521c
gnu: r-anota: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
2019-12-15 15:39:12 +01:00
869965df1c
gnu: r-sigpathway: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
2019-12-15 15:39:12 +01:00
b4e1268c7b
gnu: r-fgsea: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
2019-12-15 15:39:12 +01:00
166b3c2da6
gnu: r-dose: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
2019-12-15 15:39:12 +01:00
0654a9bc3b
gnu: r-enrichplot: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
2019-12-15 15:39:11 +01:00
08c01b7e0e
gnu: r-clusterprofiler: Update to 3.14.0.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
2019-12-15 15:39:11 +01:00
6374984a20
gnu: r-mlinterfaces: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
2019-12-15 15:39:11 +01:00
fc4a9dd579
gnu: r-annaffy: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
2019-12-15 15:39:11 +01:00
4ed18ddc0f
gnu: r-a4core: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
102b982cbe
gnu: r-a4classif: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
d6859c7c9b
gnu: r-a4preproc: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
977a7802c1
gnu: r-a4reporting: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
85c945aa97
gnu: r-a4base: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
344eb4c404
gnu: r-a4: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
aef4b34669
gnu: r-abseqr: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
2019-12-15 15:39:10 +01:00
32b471f4a7
gnu: r-bacon: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
2019-12-15 15:39:10 +01:00
6dfe5056c9
gnu: r-rgadem: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
2019-12-15 15:39:10 +01:00
35a1b3ec4c
gnu: r-motiv: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0.
[propagated-inputs]: Add r-genomicranges.
2019-12-15 15:39:10 +01:00
dda936ca9a
gnu: r-motifstack: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0.
[propagated-inputs]: Add r-ggplot2.
2019-12-15 15:39:10 +01:00
e89f16e646
gnu: r-genomicscores: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
2019-12-15 15:39:10 +01:00
36aecb2105
gnu: r-atacseqqc: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.1.
2019-12-15 15:39:10 +01:00
4997e0254a
gnu: r-gofuncr: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.0.
2019-12-15 15:39:10 +01:00
307667c4ef
gnu: r-abaenrichment: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
2019-12-15 15:39:10 +01:00
3a731c8334
gnu: r-annotationfuncs: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
2019-12-15 15:39:10 +01:00
eda4908556
gnu: r-annotationtools: Update to 1.60.0.
...
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
2019-12-15 15:39:10 +01:00
50e6f76278
gnu: r-allelicimbalance: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
2019-12-15 15:39:10 +01:00
3a35d27450
gnu: r-aucell: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0.
[propagated-inputs]: Add r-biocgenerics and r-s4vectors.
2019-12-15 15:39:09 +01:00
ca7192a1c9
gnu: r-ebimage: Update to 4.28.1.
...
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
2019-12-15 15:39:09 +01:00
3796e2442b
gnu: r-yamss: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.0.
2019-12-15 15:39:09 +01:00
cf0a1cb3b4
gnu: r-gtrellis: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.18.0.
2019-12-15 15:39:09 +01:00
4f8e0487fc
gnu: r-somaticsignatures: Update to 2.22.0.
...
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.22.0.
2019-12-15 15:39:09 +01:00
580e434267
gnu: r-yapsa: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.12.0.
2019-12-15 15:39:09 +01:00
2f90bab8d1
gnu: r-gcrma: Update to 2.58.0.
...
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.58.0.
2019-12-15 15:39:09 +01:00
a87aa2ff5a
gnu: r-simpleaffy: Update to 2.62.0.
...
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.62.0.
2019-12-15 15:39:09 +01:00
87942b74c6
gnu: r-yaqcaffy: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.46.0.
2019-12-15 15:39:09 +01:00
eb697ff5bb
gnu: r-quantro: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.20.0.
2019-12-15 15:39:09 +01:00
94fdea1267
gnu: r-yarn: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.12.0.
2019-12-15 15:39:08 +01:00
f0dd0fec40
gnu: r-roar: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-roar): Update to 1.22.0.
2019-12-15 15:39:08 +01:00
1f0101ae01
gnu: r-xbseq: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.18.0.
2019-12-15 15:39:08 +01:00
a07ee2584a
gnu: r-massspecwavelet: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.52.0.
2019-12-15 15:39:08 +01:00
4fb52345b2
gnu: r-xcms: Update to 3.8.1.
...
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.1.
[propagated-inputs]: Add r-iranges.
2019-12-15 15:39:08 +01:00
92f40538d3
gnu: r-wrench: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.4.0.
2019-12-15 15:39:08 +01:00
25db5611e2
gnu: r-wiggleplotr: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.10.1.
2019-12-15 15:39:08 +01:00
1a2569e4cc
gnu: r-widgettools: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.64.0.
2019-12-15 15:39:08 +01:00
316bcd07a8
gnu: r-webbioc: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.58.0.
2019-12-15 15:39:08 +01:00
18b93e0350
gnu: r-zfpkm: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
c5a4c5a1ce
gnu: r-rbowtie2: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
82d87ce02a
gnu: r-progeny: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
2019-12-15 15:39:08 +01:00
4f0d858841
gnu: r-arrmnormalization: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
97e317007c
gnu: r-biocfilecache: Update to 1.10.2.
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* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
2019-12-15 15:39:07 +01:00
049de95de7
gnu: r-iclusterplus: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
2019-12-15 15:39:07 +01:00
02684becc9
gnu: r-rbowtie: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
2cebc5d135
gnu: r-sgseq: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
2019-12-15 15:39:07 +01:00
3dd2450e65
gnu: r-rhisat2: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
2019-12-15 15:39:07 +01:00
a15e52ec78
gnu: r-quasr: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
2019-12-15 15:39:07 +01:00
11db82b07c
gnu: r-rqc: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
2019-12-15 15:39:07 +01:00
a9e5145c32
gnu: r-birewire: Update to 3.18.0.
...
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
2019-12-15 15:39:07 +01:00
8d766270c4
gnu: r-birta: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
2019-12-15 15:39:07 +01:00
643aaf7eaf
gnu: r-ropls: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
2019-12-15 15:39:06 +01:00
7d29dc9c7b
gnu: r-biosigner: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
2019-12-15 15:39:06 +01:00
700072565f
gnu: r-annotatr: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
2019-12-15 15:39:06 +01:00
4390788ea2
gnu: r-rsubread: Update to 2.0.0.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
2019-12-15 15:39:06 +01:00
482ba0b3ed
gnu: r-flowutils: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
2019-12-15 15:39:06 +01:00
8ad6b23f68
gnu: r-consensusclusterplus: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
2019-12-15 15:39:06 +01:00
b2a2f32130
gnu: r-flowcore: Update to 1.52.1.
...
* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
2019-12-15 15:39:06 +01:00
8042087804
gnu: r-flowmeans: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
2019-12-15 15:39:06 +01:00
ba71567acd
gnu: r-flowsom: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
2019-12-15 15:39:06 +01:00
4930a89ad5
gnu: r-mixomics: Update to 6.10.6.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
2019-12-15 15:39:06 +01:00
51ffac455e
gnu: r-rcistarget: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
2019-12-15 15:39:06 +01:00
42b06298ef
gnu: r-cicero: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
2019-12-15 15:39:06 +01:00
33ce50e322
gnu: r-genie3: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
2019-12-15 15:39:06 +01:00
Ricardo Wurmus