d59b4764f3
gnu: Add cl-prompter.
...
* gnu/packages/lisp-xyz.scm (cl-prompter, ecl-prompter, sbcl-prompter): New variables.
2023-04-27 17:50:38 +02:00
297805b1f8
gnu: python-docutils-0.15: Add missing input.
...
* gnu/packages/python-xyz.scm (python-docutils-0.15)[native-inputs]: Add
python-setuptools-57.
2023-04-27 16:32:47 +02:00
5775bbdd4b
gnu: gdcm: Disable dependent tests.
...
* gnu/packages/bioinformatics.scm (gdcm)[arguments]: Disable tests that depend
on the output of a disabled test.
2023-04-27 16:23:22 +02:00
fa685c87ea
gnu: freebayes: Update to 1.3.7.
...
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.7.
[arguments]: Do not use "grep -P" in tests; drop trailing #T.
2023-04-27 11:40:09 +02:00
133957f7bb
gnu: vcflib: Use libwfa2.pc.
...
* gnu/packages/bioinformatics.scm (vcflib)[source]: Use pkg-config to look for
libwfa2.
[inputs]: Move wfa2-lib from here...
[propagated-inputs]: ...to here.
[arguments]: Drop WFA_LINK_LIBRARIES option; fix typo in build phase name;
patch IntervalTree.h includes; add libwfa2 to pkg-config file.
2023-04-27 11:38:16 +02:00
479f2558fe
gnu: wfa2-lib: Install pkg-config file.
...
* gnu/packages/bioinformatics.scm (wfa2-lib)[arguments]: Install libwfa2.pc.
2023-04-27 11:37:36 +02:00
9d82c475a3
gnu: express: Adjust bamtools location.
...
* gnu/packages/bioinformatics.scm (express)[arguments]: Modify location of
libbamtools.so in 'use-shared-boost-libs-and-set-bamtools-paths; drop trailing
#T.
2023-04-27 09:25:26 +02:00
f196b3b7a5
gnu: python-tinycss2: Simplify.
...
* gnu/packages/python-web.scm (python-tinycss2)[build-system]: Use
pyproject-build-system.
[arguments]: Remove.
2023-04-27 09:11:05 +02:00
0dc7f773fd
gnu: python-openapi-core: Add missing input.
...
* gnu/packages/python-web.scm (python-openapi-core)[build-system]: Use
pyproject-build-system.
[arguments]: Do not override 'check phase; specify #:test-flags.
[native-inputs]: Add python-mock.
2023-04-27 08:43:29 +02:00
d8fe2e4735
gnu: libwebsockets: Update to 4.3.2.
...
* gnu/packages/web.scm (libwebsockets): Update to 4.3.2.
[arguments]: Remove.
[source]: Use GIT-FILE-NAME.
2023-04-27 08:06:13 +02:00
db19e30673
gnu: python-google-cloud-storage: Add missing input.
...
* gnu/packages/python-web.scm (python-google-cloud-storage)[native-inputs]:
Add python-mock.
2023-04-27 06:53:37 +02:00
40451d0f2d
gnu: python-google-resumable-media: Add missing input.
...
* gnu/packages/python-web.scm (python-google-resumable-media)[native-inputs]:
Add python-mock.
2023-04-27 06:53:12 +02:00
cec543e70f
gnu: python-aws-xray-sdk: Update to 2.12.0.
...
* gnu/packages/python-web.scm (python-aws-xray-sdk): Update to 2.12.0.
[build-system]: Use pyproject-build-system.
[arguments]: Specify #:test-flags; do not override 'check phase; add
'pre-check phase.
[native-inputs]: Add python-httpx, python-mock, python-pytest-asyncio, and
python-pytest-benchmark.
2023-04-27 06:48:27 +02:00
e5619147d4
gnu: python-httpx: Update to 0.24.0.
...
* gnu/packages/python-web.scm (python-httpx): Update to 0.24.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom check phase in favor of specifying #:test-flags.
[native-inputs]: Add python-hatchling and python-hatch-fancy-pypi-readme.
(python-httpx-bootstrap)[native-inputs]: Add python-hatchling and
python-hatch-fancy-pypi-readme.
2023-04-27 06:37:23 +02:00
3b19fc1801
gnu: python-httpcore: Update to 0.17.0.
...
* gnu/packages/python-web.scm (python-httpcore): Update to 0.17.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom check phase; specify #:test-flags; disable broken
tests.
2023-04-27 06:36:19 +02:00
f95498c92e
gnu: python-h11: Update to 0.14.0.
...
* gnu/packages/python-web.scm (python-h11): Update to 0.14.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
2023-04-27 06:35:38 +02:00
e1ca411852
gnu: python-wsproto: Update to 1.2.0.
...
* gnu/packages/python-web.scm (python-wsproto): Update to 1.2.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
2023-04-27 06:34:57 +02:00
bb385f2472
gnu: python-dendropy: Fix build.
...
* gnu/packages/bioinformatics.scm (python-dendropy)[native-inputs]: Add
python-pytest.
[arguments]: Add phase 'python-compatibility; remove 'skip-broken-tests; add
#:test-flags; do not delete test files.
[build-system]: Use pyproject-build-system.
2023-04-26 22:53:26 +02:00
4ea332cd50
gnu: python-watchgod: Update to 0.8.1.
...
* gnu/packages/python-xyz.scm (python-watchgod): Update to 0.8.1.
[build-system]: Use pyproject-build-system.
[arguments]: Specify #:test-flags instead of overwriting 'check phase.
[native-inputs]: Add python-anyio.
2023-04-26 22:52:05 +02:00
18786ae502
gnu: python-fastjsonschema: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-fastjsonschema): Reindent.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom check phase; update comment on why tests are
disabled.
2023-04-26 22:12:32 +02:00
182fbbb009
gnu: python-rapidjson: Update to 1.10.
...
* gnu/packages/python-web.scm (python-rapidjson): Update to 1.10.
[source]: Simplify snippet.
[arguments]: Run tests conditionally; do not delete test files.
2023-04-26 22:11:07 +02:00
00cf71df80
gnu: rapidjson: Update to 1.1.0-1.949c771.
...
* gnu/packages/patches/rapidjson-gcc-compat.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/web.scm (rapidjson): Update to 1.1.0-1.949c771.
[source]: Remove obsolete patch.
2023-04-26 22:09:06 +02:00
abda97b645
gnu: python-multiprocess: Update to 0.70.14.
...
* gnu/packages/python-xyz.scm (python-multiprocess): Update to 0.70.14.
[build-system]: Use pyproject-build-system.
[arguments]: Adjust directory containing tests; disable two more tests;
replace check phase instead of deleting and adding it; run tests
conditionally.
2023-04-26 21:33:02 +02:00
95fdd862d0
gnu: python-dill: Update to 0.3.6.
...
* gnu/packages/python-xyz.scm (python-dill): Update to 0.3.6.
[build-system]: Use pyproject-build-system.
[arguments]: Run tests conditionally; drop trailing #T from build phase.
2023-04-26 21:33:02 +02:00
d12ad4105a
gnu: python-jupyterlab-widgets: Update to 1.1.4.
...
* gnu/packages/jupyter.scm (python-jupyterlab-widgets): Update to 1.1.4.
[build-system]: Use pyproject-build-system.
2023-04-26 21:33:02 +02:00
faa4485b52
gnu: python-fire: Add missing input.
...
* gnu/packages/python-xyz.scm (python-fire)[native-inputs]: Add python-mock.
2023-04-26 21:33:02 +02:00
d38bdca344
gnu: gitg: Fix build.
...
* gnu/packages/patches/gitg-fix-positional-argument.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
* gnu/packages/gnome.scm (gitg)[source]<patches>: Use it here.
2023-04-26 20:52:33 +02:00
d7e489d6e0
gnu: gnome-2048: Fix build.
...
* gnu/packages/patches/gnome-2048-fix-positional-argument.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
* gnu/packages/games.scm (gnome-2048)[source]<patches>: Use it here.
2023-04-26 20:52:32 +02:00
e86851ccb3
gnu: python-umap-learn: Patch for sklearn/numpy compatibility.
...
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add phase
'numpy-compatibility.
2023-04-26 18:34:46 +02:00
5bfce83dc4
gnu: python-tables: Build cython files from source.
...
* gnu/packages/python-xyz.scm (python-tables)[source]: Remove generated C
files.
[arguments]: Remove trailing #T from build phases; use G-expression; override
library directories.
[inputs]: Add c-blosc and lzo.
2023-04-26 17:01:08 +02:00
2d883cbd6d
gnu: python-bokeh: Add missing input.
...
* gnu/packages/python-xyz.scm (python-bokeh)[native-inputs]: Add python-mock.
2023-04-26 16:39:10 +02:00
41ba9df6ba
gnu: python-tornado: Run a lot more tests and fix collections.
...
* gnu/packages/python-web.scm (python-tornado)[arguments]: Do run tests; add
phase 'fix-collections.
2023-04-26 16:11:11 +02:00
81ec8eba91
gnu: nikola: Add input.
...
* gnu/packages/python-xyz.scm (nikola)[propagated-inputs]: Add python-toml.
2023-04-26 15:56:30 +02:00
1f7d1125a3
gnu: cl-mock: Update to 1.1.0-0.01762fd.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-mock): Update to 1.1.0-0.01762fd.
[arguments]: Build cl-mock and cl-mock-basic systems.
[inputs]: Add sbcl-bordeaux-threads.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-04-26 15:08:15 +02:00
8d217f1e22
gnu: cl-fast-ecs: Update to 0.2.2.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-fast-ecs): Update to 0.2.2.
[native-inputs]: Add sbcl-chlorophyll, sbcl-cl-mock.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-04-26 15:08:15 +02:00
870f2d40e0
gnu: Add cl-chlorophyll.
...
* gnu/packages/lisp-xyz.scm (cl-chlorophyll, ecl-chlorophyll,
sbcl-chlorophyll): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-04-26 15:08:15 +02:00
e129321f13
gnu: cl-nclasses: Update to 0.4.0.
...
gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.4.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-04-26 15:08:15 +02:00
62fed3b874
gnu: flwrap: Update to 1.3.6.
...
* gnu/packages/radio.scm (flwrap): Update to 1.3.6.
2023-04-26 15:08:15 +02:00
bfbe2a518d
gnu: pdf2djvu: Update to 0.9.19.
...
* gnu/packages/djvu.scm (pdf2djvu): Update to 0.9.19.
2023-04-26 15:08:15 +02:00
f858704e7c
gnu: xonsh: Add missing input.
...
Xonsh vim emulation mode/environment variable does not work without this.
* gnu/packages/shell.scm (xonsh)[inputs]: Add PYTHON-PROMPT-TOOLKIT.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-26 14:56:55 +02:00
9d12ce6fa4
gnu: plocate: Update to 1.1.18.
...
* gnu/packages/search.scm (plocate): Update to 1.1.18.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-26 14:49:08 +02:00
2dc87d8dcf
gnu: emacs-vertico: Update to 1.3.
...
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 1.3.
2023-04-26 14:49:08 +02:00
3856ca96fc
gnu: Add emacs-lojban.
...
* gnu/packages/emacs-xyz.scm (emacs-lojban): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-26 14:49:07 +02:00
c3509c2148
gnu: valgrind: Update to 3.20.0.
...
* gnu/packages/valgrind.scm (valgrind): Update to 3.20.0. Remove patch.
[arguments]<phases>: Remove trailing #t.
* gnu/packages/patches/valgrind-enable-arm.patch: Delete file.
* gnu/packages/valgrind.scm (dist_patch_DATA): Unregister patch.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-26 14:34:23 +02:00
50dcd1acd7
gnu: lz4: Remove valgrind from native-inputs.
...
* gnu/compression.scm (lz4)[native-inputs]: Remove valgrind.
[arguments]<phases>: Remove trailing #t.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-26 14:34:08 +02:00
399e1b8e01
gnu: python-ipykernel: Fix build.
...
* gnu/packages/python-xyz.scm (python-ipykernel)[build-system]: Use
pyproject-build-system.
[arguments]: Use pyproject-build-system modules; add build phase
'hide-zmq-deprecation-warnings.
2023-04-26 13:33:30 +02:00
c22765c933
news: Add 'de' translation.
...
* etc/news.scm: Add German translation of core-updates entry.
2023-04-26 12:27:11 +02:00
4ef9fbcc35
gnu: python-jupyter-client: Disable one test.
...
* gnu/packages/python-xyz.scm (python-jupyter-client)[arguments]: Begrudgingly
disable one failing test, because there is no information on why it fails.
2023-04-26 11:44:45 +02:00
cc79caccee
gnu: python-jupyter-client-bootstrap: Hide zmq deprecation warning.
...
* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap)[arguments]:
Add phase 'hide-zmq-deprecation-warning.
2023-04-26 11:44:45 +02:00
358428c1ec
gnu: python-jupyter-client-bootstrap: Use pyproject-build-system.
...
* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap)[build-system]:
Use pyproject-build-system.
2023-04-26 11:44:45 +02:00
Pierre Neidhardt
Ricardo Wurmus
Liliana Marie Prikler
Andreas Enge
Sharlatan Hellseher
Artyom Bologov
Guillaume Le Vaillant
jgart
kiasoc5
Nicolas Goaziou
Christine Lemmer-Webber
zimoun
Florian Pelz