82d8ab01f5
maint: Require Guile 3.0.
...
* configure.ac: Require Guile 3.0.
* doc/guix.texi (Requirements): Adjust accordingly.
* gnu/packages/package-management.scm (guile2.2-guix): Remove.
* guix/lint.scm (exception-with-kind-and-args?): Remove 'cond-expand'.
* guix/scripts/deploy.scm (deploy-machine*): Likewise.
* guix/store.scm (call-with-store): Likewise.
* guix/swh.scm (http-get*, http-post*): Likewise.
* guix/ui.scm (without-compiler-optimizations, guard*)
(call-with-error-handling): Likewise.
2021-06-01 23:26:07 +02:00
49b15701ad
gnu: llvm-7: Update to 7.1.0.
...
* gnu/packages/llvm.scm (llvm-7): Update to 7.1.0.
2021-06-01 22:50:47 +03:00
8d14d602ea
gnu: unbound: Enable DoH support.
...
* gnu/packages/dns.scm (unbound)[inputs]: Add NGHTTP2:LIB.
[arguments]: Add "--with-libnghttp2" to #:configure-flags.
2021-06-01 20:21:54 +02:00
304895d5e0
gnu: ungoogled-chromium: Update to 91.0.4472.77-0.6802c88.
...
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 91.
(%chromium-version): Set to 91.0.4472.77.
(%ungoogled-revision): Set to 91.0.4472.77-1-0-g6802c88.
(%debian-patches): Remove obsolete patch.
(%ungoogled-origin): Update hash.
(ungoogled-chromium-snippet): Add substitution for an unbundling file.
(ungoogled-chromium): Update hash.
[arguments]: Add a substitution previously provided by a Debian patch.
[inputs]: Change from ICU-68 to ICU-69.
2021-06-01 20:21:54 +02:00
e54c03c1f5
gnu: icu4c: Add 69.1.
...
* gnu/packages/icu4c.scm (icu4c-69): New public variable.
2021-06-01 20:21:54 +02:00
9ea6e3f4d8
gnu: gcc-9: Update to 9.4.0.
...
* gnu/packages/gcc.scm (gcc-9): Update to 9.4.0.
2021-06-01 20:54:06 +03:00
cb821238ed
gnu: musescore: Add missing QML imports.
...
This fixes an issue wherein the palettes sidebar would turn up empty.
* gnu/packages/music.scm (musescore)[build-system]: Use qt-build-systems.
[inputs]: Add qtgraphicaleffects.
2021-06-01 18:52:48 +02:00
776a21a096
gnu: rust-cbindgen@0.17: Update to 0.19.0.
...
* gnu/packages/rust-apps.scm (rust-cbindgen-0.17): Update to 0.19.0 and
rename to rust-cbindgen-0.19.
2021-06-01 17:59:34 +02:00
0b76b25a0e
tests: hpcguix-web: Fix it.
...
* gnu/tests/web.scm (run-hpcguix-web-server-test): Increase the VM memory size
and add retries for the http-get test.
2021-06-01 14:33:27 +02:00
7ae2b1f2dc
gnu: Add bamutils.
...
* gnu/packages/bioinformatics.scm (bamutils): New variable.
2021-06-01 13:14:38 +02:00
b4e3b77270
gnu: sbcl: Update to 2.1.5.
...
* gnu/packages/lisp.scm (sbcl): Update to 2.1.5.
2021-06-01 12:01:24 +02:00
641a88e8c8
gnu: Add python-vedo.
...
* gnu/packages/python-science.scm (python-vedo): New variable.
2021-06-01 10:24:46 +01:00
d769fcd683
gnu: vtk: Wrap python modules.
...
* gnu/packages/image-processing.scm (vtk)[inputs]: Add python.
[arguments]: Add VTK_WRAP_PYTHON and VTK_PYTHON_VERSION flags.
2021-06-01 10:19:48 +01:00
fd0650eebe
gnu: guix: Update to 1.3.0-3.50dfbbf.
...
* gnu/packages/package-management.scm (guix): Update to 1.3.0-3.50dfbbf.
2021-06-01 11:03:45 +02:00
50dfbbf8ef
gnu: Add python-sinfo.
...
* gnu/packages/python-xyz.scm (python-sinfo): New variable.
2021-06-01 10:18:00 +02:00
b346a7c7db
gnu: Add python-stdlib-list.
...
* gnu/packages/python-xyz.scm (python-stdlib-list): New variable.
2021-06-01 10:13:38 +02:00
a6a1939251
gnu: guix-build-coordinator: Update to 0-30.f9af463.
...
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-30.f9af463.
2021-06-01 09:01:58 +01:00
0b8fa24bbd
publish: Add keep-alive support when sending nar.
...
The default Guile web server implementation supports the keep alive
mechanism. However, in our custom http-write implementation, the connection
is unconditionally close after sending nar files.
To prevent that, when supported, add the client port to the server poll set so
that further requests can be handled without closing the connection.
* guix/scripts/publish.scm (nar-response-port): Rename it into ...
(nar-compressed-port): ... this procedure. Operate directly on a given PORT.
(http-write): Add keep-alive support when sending nar files.
* guix/scripts/substitute.scm (process-substitution): Pass the download size
to the progress-report-port procedure so that it doesn't block reading from
the input port when keep-alive is supported.
2021-06-01 09:10:32 +02:00
2acc114a96
publish: Preserve the request connection header.
...
The Guile web server is reading the response connection header to decide
whether to close the connection. However, as the request connection header is
not forwarded to the response, this mechanism cannot work.
* guix/scripts/publish.scm (add-extra-headers): New procedure.
(make-request-handler): Use it to forward the request connection header to the
response.
2021-06-01 09:10:32 +02:00
4f2fa2f980
progress: Add a download-size argument to progress-report-port.
...
* guix/progress.scm (progress-report-port): Add a download-size argument.
2021-06-01 09:10:32 +02:00
ea55e1355b
services: dnsmasq: Extend 'activation-service'.
...
* gnu/services/dns.scm (dnsmasq-activation): New procedure …
(dnsmasq-service-type): … use it.
2021-05-31 22:06:54 +02:00
62a8d487d6
services: hostapd: Use package from configuration.
...
* gnu/services/networking.scm (hostapd-shepherd-services): Replace
'hostapd' by the package specified in the configuration.
2021-05-31 22:04:57 +02:00
8a0dc5f1bf
tests: Fix loadable-kernel-modules-service tests.
...
* gnu/tests/linux-modules.scm
(run-loadable-kernel-modules-service-test): Actually load the modules
with kernel-module-loader-service-type. Use a singleton service instead
of defining a custom one.
* doc/guix.texi (Service Reference): To give an example of
linux-loadable-module-service-type use a singleton instead of defining a
new service.
2021-05-31 21:57:26 +02:00
eb8928eeba
gnu: emacs-tramp: Update to 2.5.0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.0.5.
2021-05-31 21:37:53 +02:00
93744e470b
gnu: emacs-solaire-mode: Update to 2.0.0.
...
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): Update to 2.0.0.
2021-05-31 21:37:15 +02:00
4e74d25d85
gnu: texmacs: Update to 1.99.21.
...
* gnu/packages/text-editors.scm (texmacs): Update to 1.99.21.
2021-05-31 21:35:53 +02:00
5af640b6d7
gnu: emacs-moody: Update to 0.5.5.
...
* gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.5.5.
2021-05-31 21:25:28 +02:00
6cdc1c72f1
gnu: emacs-posframe: Update to 1.0.3.
...
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.0.3.
2021-05-31 21:24:15 +02:00
4092813037
gnu: lagrange: Update to 1.5.0.
...
* gnu/packages/web-browsers.scm (lagrange): Update to 1.5.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31 21:06:36 +02:00
d16ddafcc7
gnu: Add emacs-eyebrowse.
...
* gnu/packages/emacs-xyz.scm (emacs-eyebrowse): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31 21:05:57 +02:00
71854b7dfe
gnu: Add python-easy-ansi.
...
* gnu/packages/python-xyz.scm (python-easy-ansi): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31 21:05:03 +02:00
dafd3265ad
gnu: Add emacs-evil-paredit.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-paredit): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31 21:03:09 +02:00
f7825ee85a
gnu: tome4: Update to 1.7.3.
...
* gnu/packages/games.scm (tome4): Update to 1.7.3.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31 20:59:29 +02:00
f463f376e9
gnu: bits: Use git-version and git-file-name.
...
* gnu/packages/bioinformatics.scm (bits)[version]: Use git-version.
[source]: Use git-file-name.
2021-05-31 16:10:20 +02:00
d1e1c02e28
gnu: piranha: Use git-version.
...
* gnu/packages/bioinformatics.scm (piranha)[version]: Use git-version.
2021-05-31 16:10:00 +02:00
8c033085cc
gnu: r-chipkernels: Use git-version and git-file-name.
...
* gnu/packages/bioinformatics.scm (r-chipkernels)[version]: Use git-version.
[source]: Use git-file-name.
2021-05-31 16:09:35 +02:00
3acfbd4811
gnu: f-seq: Use git-version and git-file-name.
...
* gnu/packages/bioinformatics.scm (f-seq)[version]: Use git-version.
[source]: Use git-file-name.
2021-05-31 16:09:07 +02:00
09b50a6ec2
gnu: bismark: Use git-file-name.
...
* gnu/packages/bioinformatics.scm (bismark)[source]: Use git-file-name.
2021-05-31 16:08:47 +02:00
f383f9e311
gnu: filevercmp: Use git-version.
...
* gnu/packages/bioinformatics.scm (filevercmp)[version]: Use git-version; bind
"revision" in outer let.
2021-05-31 16:08:12 +02:00
ec543ba672
gnu: r-chipseeker: Move out of experiment section.
...
* gnu/packages/bioconductor.scm (r-chipseeker): Move the package from the
"experiment" section to the section for regular Bioconductor packages.
2021-05-31 15:54:41 +02:00
a6e7afd4d5
gnu: r-spp: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-spp): Move from here...
* gnu/packages/bioconductor.scm (r-spp): ...to here.
2021-05-31 15:53:20 +02:00
1a6108ce2b
gnu: r-geneoverlap: Move out of experiment section.
...
* gnu/packages/bioconductor.scm (r-geneoverlap): Move the package definition
out of the "experiment" section into the section for regular Bioconductor
packages.
2021-05-31 15:53:09 +02:00
b0ecd6cea9
gnu: r-phantompeakqualtools: Let-bind commit, set revision to 1.
...
* gnu/packages/bioinformatics.scm (r-phantompeakqualtools): Bind the commit
outside of the package value.
[version]: Use git-version.
[source]: Use git-file-name.
2021-05-31 15:46:30 +02:00
c294c0d782
gnu: r-methylkit: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-methylkit): Move from here...
* gnu/packages/bioconductor.scm (r-methylkit): ...to here.
2021-05-31 15:39:49 +02:00
7ab44aeed6
gnu: r-copywriter: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-copywriter): Move from here...
* gnu/packages/bioconductor.scm (r-copywriter): ...to here.
2021-05-31 15:39:49 +02:00
36cb01066c
gnu: r-copyhelper: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here...
* gnu/packages/bioconductor.scm (r-copyhelper): ...to here.
[source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.
2021-05-31 15:39:47 +02:00
31e50e1f48
gnu: r-chipseq: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-chipseq): Move from here...
* gnu/packages/bioconductor.scm (r-chipseq): ...to here.
2021-05-31 15:39:00 +02:00
0eaa75c811
gnu: r-rhdf5: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5): ...to here.
2021-05-31 15:39:00 +02:00
cc1dbea883
gnu: r-annotationfilter: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here...
* gnu/packages/bioconductor.scm (r-annotationfilter): ...to here.
2021-05-31 15:39:00 +02:00
67e99369c1
gnu: r-rhdf5filters: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5filters): ...to here.
2021-05-31 15:39:00 +02:00
Ludovic Courtès
Efraim Flashner
Marius Bakke
Leo Prikler
Jonathan Brielmaier
Mathieu Othacehe
Roel Janssen
Pierre Neidhardt
Paul Garlick
Christopher Baines
Brice Waegeneire
Nicolas Goaziou
Solene Rapenne via Guix-patches via
Stefan Reichör
Xinglu Chen
Ricardo Wurmus
zimoun