7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:48 +01:00
64f9fb308f
gnu: r-bigmelon: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
2020-12-09 12:12:48 +01:00
9f6e2bfe1f
gnu: r-watermelon: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
2020-12-09 12:12:47 +01:00
8db36c1f68
gnu: r-yarn: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
2020-12-09 12:12:47 +01:00
adf6edc750
gnu: r-quantro: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
2020-12-09 12:12:47 +01:00
4eeaa159d2
gnu: r-lumi: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
2020-12-09 12:12:47 +01:00
0b7dd44706
gnu: r-methylumi: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
2020-12-09 12:12:47 +01:00
e5a4198bc3
gnu: r-minfi: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
2020-12-09 12:12:47 +01:00
45dfb75166
gnu: Add r-catalyst.
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* gnu/packages/bioconductor.scm (r-catalyst): New variable.
2020-12-09 12:12:47 +01:00
43bf50ecae
gnu: r-ggcyto: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
2020-12-09 12:12:47 +01:00
b856a48768
gnu: r-scdd: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
2020-12-09 12:12:47 +01:00
3f04b8167b
gnu: r-chipcomp: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
2020-12-09 12:12:47 +01:00
1174317e03
gnu: r-pcatools: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
2020-12-09 12:12:47 +01:00
b03c955c6f
gnu: r-scran: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
d4b5d18684
gnu: r-scater: Update to 1.18.3.
...
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:46 +01:00
0e60dda0ae
gnu: Add r-scuttle.
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* gnu/packages/bioconductor.scm (r-scuttle): New variable.
2020-12-09 12:12:46 +01:00
10c87ecf77
gnu: r-delayedmatrixstats: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2020-12-09 12:12:46 +01:00
4ef898d449
gnu: r-singlecellexperiment: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
2020-12-09 12:12:46 +01:00
d0db04fcaf
gnu: r-yapsa: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
2020-12-09 12:12:46 +01:00
798ec28916
gnu: r-biocsingular: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
2020-12-09 12:12:46 +01:00
dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
2020-12-09 12:12:46 +01:00
35dae95110
gnu: r-interactionset: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
2020-12-09 12:12:46 +01:00
5e719988f2
gnu: Add r-sparsematrixstats.
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* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
2020-12-09 12:12:46 +01:00
a23310ffc2
gnu: Add r-bluster.
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* gnu/packages/bioconductor.scm (r-bluster): New variable.
2020-12-09 12:12:45 +01:00
aca4ebe40a
gnu: r-annaffy: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
2020-12-09 12:12:45 +01:00
16f16b5e21
gnu: Add r-msmstests.
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* gnu/packages/bioconductor.scm (r-msmstests): New variable.
2020-12-09 12:12:43 +01:00
e520c68fa9
gnu: Add r-msmseda.
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* gnu/packages/bioconductor.scm (r-msmseq): New variable.
2020-12-09 12:12:43 +01:00
fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1.
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* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
2020-12-09 12:12:36 +01:00
0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link.
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* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
26cf5eb568
gnu: r-hdf5array: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-hdf5array): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
b58c4e7613
gnu: r-cytolib: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
c5ae5c1c40
gnu: r-rhdf5lib: Fix build.
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* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Fix build.
2020-12-09 12:12:36 +01:00
79cb6af375
gnu: r-rhdf5lib: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.0.
2020-12-09 12:12:36 +01:00
5992c25e7f
gnu: r-hdf5array: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.0.
2020-12-09 12:12:36 +01:00
c8da013780
gnu: Add r-matrixgenerics.
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* gnu/packages/bioconductor.scm (r-matrixgenerics): New variable.
2020-12-09 12:12:36 +01:00
ed44a72acf
gnu: r-hitc: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.34.0.
2020-12-09 12:12:35 +01:00
7105658e9c
gnu: r-fithic: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-fithic): Update to 1.16.0.
2020-12-09 12:12:35 +01:00
b6348b0edf
gnu: r-rgraphviz: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.34.0.
2020-12-09 12:12:35 +01:00
8fa30df02a
gnu: r-preprocesscore: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.0.
2020-12-09 12:12:35 +01:00
e5b2c80dc2
gnu: r-fourcseq: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-fourcseq): Update to 1.24.0.
2020-12-09 12:12:35 +01:00
3cacc3bdce
gnu: r-icens: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-icens): Update to 1.62.0.
2020-12-09 12:12:35 +01:00
126846a0da
gnu: r-m3c: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.12.0.
2020-12-09 12:12:35 +01:00
7a242042ae
gnu: r-rgreat: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.22.0.
2020-12-09 12:12:35 +01:00
15be98c136
gnu: r-biodist: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-biodist): Update to 1.62.0.
2020-12-09 12:12:34 +01:00
7891c83c3e
gnu: r-biocworkflowtools: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
feb0cbf402
gnu: r-biocset: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-biocset): Update to 1.4.0.
[propagated-inputs]: Add r-s4vectors; remove r-rtracklayer.
2020-12-09 12:12:34 +01:00
ff4834c065
gnu: Add r-biocio.
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* gnu/packages/bioconductor.scm (r-biocio): New variable.
2020-12-09 12:12:34 +01:00
6a5d8cadee
gnu: r-biocpkgtools: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.0.
2020-12-09 12:12:34 +01:00
072f722f8e
gnu: r-biocor: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-biocor): Update to 1.14.0.
2020-12-09 12:12:34 +01:00
e29b15ee97
gnu: r-bioconcotk: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.10.0.
2020-12-09 12:12:34 +01:00
13d0b780c1
gnu: r-multiassayexperiment: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
49a728581f
gnu: r-experimenthub: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
abc18fc596
gnu: r-biocgraph: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
7dced9ad01
gnu: r-bioccasestudies: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
b0f3bfe4ae
gnu: r-ebarrays: Update to 2.54.0.
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* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.54.0.
2020-12-09 12:12:34 +01:00
a4f4a55283
gnu: r-reactomepa: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.
2020-12-09 12:12:34 +01:00
26224e09ae
gnu: r-graphite: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.
2020-12-09 12:12:34 +01:00
95e30d8f6e
gnu: r-biobroom: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.
2020-12-09 12:12:33 +01:00
2f36b0406e
gnu: r-bioassayr: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.
2020-12-09 12:12:33 +01:00
95ef268142
gnu: r-chemminer: Update to 3.42.0.
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* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.
2020-12-09 12:12:33 +01:00
1e28867803
gnu: r-bigpint: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.
2020-12-09 12:12:33 +01:00
e80f8262f6
gnu: r-bigmemoryextras: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.
2020-12-09 12:12:33 +01:00
0f94a9edb0
gnu: r-biggr: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.
2020-12-09 12:12:33 +01:00
249b703056
gnu: r-hyperdraw: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
294fd58a42
gnu: r-hypergraph: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.62.0.
2020-12-09 12:12:33 +01:00
3320f044a3
gnu: r-rsbml: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.48.0.
2020-12-09 12:12:33 +01:00
d57be63323
gnu: r-bifet: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.10.0.
2020-12-09 12:12:33 +01:00
4ec665693d
gnu: r-bicare: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-bicare): Update to 1.48.0.
2020-12-09 12:12:33 +01:00
2219bef12f
gnu: r-bhc: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
3cebe2745a
gnu: r-bgx: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-bgx): Update to 1.56.0.
2020-12-09 12:12:33 +01:00
fad5da32dc
gnu: r-bgmix: Update to 1.50.0.
...
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.50.0.
2020-12-09 12:12:32 +01:00
fa7e242910
gnu: r-unifiedwmwqpcr: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
949626f209
gnu: r-htqpcr: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.44.0.
2020-12-09 12:12:32 +01:00
44ecd5f77f
gnu: r-variancepartition: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.20.0.
2020-12-09 12:12:32 +01:00
45ea773f94
gnu: r-variantfiltering: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
87f704b43c
gnu: r-timeseriesexperiment: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.8.0.
2020-12-09 12:12:32 +01:00
fd7e23b551
gnu: r-wavcluster: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.24.0.
2020-12-09 12:12:32 +01:00
0c53f27dd6
gnu: r-reqon: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-reqon): Update to 1.36.0.
2020-12-09 12:12:32 +01:00
42e00c0923
gnu: r-seqbias: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.38.0.
2020-12-09 12:12:32 +01:00
a50779b8a3
gnu: r-gdsfmt: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
e7b61ba7f6
gnu: r-roc: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-roc): Update to 1.66.0.
2020-12-09 12:12:31 +01:00
5d1bd61137
gnu: r-genie3: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.12.0.
2020-12-09 12:12:31 +01:00
7954fe16a0
gnu: r-cicero: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.0.
2020-12-09 12:12:31 +01:00
6481357330
gnu: r-rcistarget: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.10.0.
2020-12-09 12:12:31 +01:00
fafaeab48b
gnu: r-depecher: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-depecher): Update to 1.6.0.
2020-12-09 12:12:31 +01:00
0e78ce36f0
gnu: r-mixomics: Update to 6.14.0.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.0.
2020-12-09 12:12:31 +01:00
1f7ddaf0fb
gnu: r-flowsom: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.22.0.
2020-12-09 12:12:31 +01:00
63033b159a
gnu: r-cytoml: Update to 2.2.1.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.1.
2020-12-09 12:12:31 +01:00
5abf0a0dd2
gnu: r-opencyto: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
fd11c7b80f
gnu: r-flowstats: Update to 4.2.0.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.2.0.
2020-12-09 12:12:30 +01:00
1b347814f8
gnu: r-flowworkspace: Update to 4.2.0.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.2.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-aws-s3 and r-aws-signature. Remove r-stringr.
2020-12-09 12:12:30 +01:00
5bab0b7eee
gnu: r-rprotobuflib: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
33c5b6d7ca
gnu: r-flowclust: Update to 3.28.0.
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* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.28.0.
2020-12-09 12:12:30 +01:00
d5a53ab76b
gnu: r-flowviz: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.54.0.
2020-12-09 12:12:30 +01:00
eac1eaaa0f
gnu: r-ncdfflow: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.36.0.
2020-12-09 12:12:30 +01:00
2cd78131cc
gnu: r-flowmeans: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.50.0.
2020-12-09 12:12:30 +01:00
3f0e93b47b
gnu: r-flowcore: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.2.0.
[propagated-inputs]: Add r-s4vectors.
2020-12-09 12:12:29 +01:00
c6ccd4fcb1
gnu: r-cytolib: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.0.
[native-inputs]: Add pkg-config.
2020-12-09 12:12:29 +01:00
Ricardo Wurmus
zimoun
Roel Janssen