89d7c8efc6
gnu: Add r-chromvar.
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* gnu/packages/bioconductor.scm (r-chromvar): New variable.
2021-02-18 15:57:52 +01:00
9a38f39ec0
gnu: Add r-motifmatchr.
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* gnu/packages/bioconductor.scm (r-motifmatchr): New variable.
2021-02-18 15:40:44 +01:00
2def2e203f
gnu: Add r-tfbstools.
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* gnu/packages/bioconductor.scm (r-tfbstools): New variable.
2021-02-18 15:35:38 +01:00
e6bc150b0c
gnu: Add r-cner.
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* gnu/packages/bioconductor.scm (r-cner): New variable.
2021-02-18 15:19:46 +01:00
311bb4bc3d
gnu: r-delayedmatrixstats: Update to 1.12.3.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.3.
2021-02-11 21:33:37 +01:00
8acfd9f3d4
gnu: r-sparsematrixstats: Update to 1.2.1.
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* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.2.1.
2021-02-11 21:33:37 +01:00
de4fc49270
gnu: r-scran: Update to 1.18.5.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.5.
2021-02-11 21:33:37 +01:00
cf3e703820
gnu: r-scuttle: Update to 1.0.4.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.4.
2021-02-11 21:33:37 +01:00
79d51ffeca
gnu: r-beachmat: Update to 2.6.4.
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* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.4.
2021-02-11 21:33:37 +01:00
a1357422c3
gnu: r-rhdf5lib: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.1.
2021-02-11 21:33:37 +01:00
f7947f8991
gnu: r-hdf5array: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.1.
2021-02-11 21:33:37 +01:00
18ebacaa1c
gnu: r-preprocesscore: Update to 1.52.1.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.1.
2021-02-11 21:33:37 +01:00
da109ae738
gnu: r-chemminer: Update to 3.42.1.
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* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.1.
2021-02-11 21:33:37 +01:00
6f37c3ea40
gnu: r-gdsfmt: Update to 1.26.1.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.1.
2021-02-11 21:33:36 +01:00
9470f901d9
gnu: r-cytolib: Update to 2.2.1.
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* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.1.
2021-02-11 21:33:36 +01:00
691178d67b
gnu: r-multidataset: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.1.
2021-02-11 21:33:36 +01:00
6d0709231f
gnu: r-clusterprofiler: Update to 3.18.1.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.1.
2021-02-11 21:33:36 +01:00
ebf9ad7984
gnu: r-enrichplot: Update to 1.10.2.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.2.
2021-02-11 21:33:36 +01:00
669ea5ab09
gnu: r-matrixgenerics: Update to 1.2.1.
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* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.2.1.
2021-02-11 21:33:36 +01:00
61609fb88e
gnu: r-diffbind: Update to 3.0.13.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.13.
2021-02-11 21:33:36 +01:00
a7d6e1b6a1
gnu: r-ldheatmap: Move to (gnu packages bioconductor).
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This is a follow-up to commit 0c8bb20b7c
2020-12-29 22:17:37 +01:00
610cd6a170
gnu: r-ggbio: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-ggbio): Move from here...
* gnu/packages/bioconductor.scm (r-ggbio): ...to here.
2020-12-29 17:40:28 +01:00
81f481d6cd
gnu: r-gqtlstats: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
2020-12-29 17:40:28 +01:00
61ec8928c7
gnu: r-snpstats: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-snpstats): Move from here...
* gnu/packages/bioconductor.scm (r-snpstats): ...to here.
2020-12-29 17:40:28 +01:00
a2c66d18a5
gnu: r-homo-sapiens: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-homo-sapiens): Move from here...
* gnu/packages/bioconductor.scm (r-homo-sapiens): ...to here.
Replace 'string-append' by 'bioconductor-uri' with 'annotation'.
2020-12-29 17:40:28 +01:00
8c2b7c9a2a
gnu: r-erma: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-erma): Move from here...
* gnu/packages/bioconductor.scm (r-erma): ...to here.
2020-12-29 17:40:28 +01:00
8f1237c350
gnu: r-ldblock: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-ldblock): Move from here...
* gnu/packages/bioconductor.scm (r-ldblock): ...to here.
2020-12-29 17:40:28 +01:00
9534e7b706
gnu: r-gqtlstats: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
2020-12-29 17:40:28 +01:00
2a4322f7c3
gnu: r-gviz: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-gviz): Move from here...
* gnu/packages/bioconductor.scm (r-gviz): ...to here.
2020-12-29 17:40:28 +01:00
69a5e066c1
gnu: r-gwascat: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-gwascat): Move from here...
* gnu/packages/bioconductor.scm (r-gwascat): ...to here.
2020-12-29 17:40:28 +01:00
838db0de5e
gnu: r-sushi: Move to (gnu packages bioconductor).
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* gnu/packages/bioinformatics.scm (r-sushi): Move from here...
* gnu/packages/bioconductor.scm (r-sushi): ...to here.
2020-12-29 17:40:25 +01:00
17235ec28c
gnu: r-nmf: Move from "annotation" to "package" section.
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* gnu/packages/bioconductor.scm (r-nmf): Move variable.
2020-12-17 11:41:15 +01:00
eb3c105126
gnu: r-deconstructsigs: Move from "annotation" to "package" section.
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* gnu/packages/bioconductor.scm (r-deconstructsigs): Move variable.
2020-12-17 11:40:31 +01:00
e7fa79fd91
gnu: r-pasilla: Move from "annotation" to "experiment" section.
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* gnu/packages/bioconductor.scm (r-pasilla): Move variable.
2020-12-17 11:39:51 +01:00
cc54848ad0
gnu: r-ideoviz: Move from "annotation" to "package" section.
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* gnu/packages/bioconductor.scm (r-ideoviz): Move variable.
2020-12-17 11:39:06 +01:00
e5610fd9f4
gnu: r-genelendatabase: Move from "annotation" to "experiment" section.
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* gnu/packages/bioconductor.scm (r-genelendatabase): Move variable.
2020-12-17 11:38:24 +01:00
30a4bd3bb3
gnu: r-bluster: Move from "annotation" to "package" section.
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* gnu/packages/bioconductor.scm (r-bluster): Move variable.
2020-12-17 11:37:47 +01:00
1abb6a2a78
gnu: r-cummerbund: Move from "experiment" to "package" section.
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* gnu/packages/bioconductor.scm (r-cummerbund): Move variable.
2020-12-17 11:37:17 +01:00
17d95689b4
gnu: r-coverageview: Move from "experiment" to "package" section.
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* gnu/packages/bioconductor.scm (r-coverageview): Move variable.
2020-12-17 11:36:26 +01:00
04a0594662
gnu: Add r-org-eck12-eg-db.
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* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-17 11:26:53 +01:00
e4b0794e52
gnu: Add r-pathview.
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* gnu/packages/bioconductor.scm (r-pathview): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-17 11:26:53 +01:00
7395458d40
gnu: Add r-kegggraph.
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* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
2020-12-17 11:26:53 +01:00
eb2f1a7dd9
gnu: Add r-gagedata.
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* gnu/packages/bioconductor.scm (r-gagedata): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-12-17 11:26:53 +01:00
3872153a2f
gnu: r-scuttle: Update to 1.0.3.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.3.
[propagated-inputs]: Add r-genomicranges.
2020-12-09 23:30:12 +01:00
eed728951c
gnu: r-beachmat: Update to 2.6.2.
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* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.2.
2020-12-09 23:30:12 +01:00
589ac42212
gnu: r-cicero: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.1.
2020-12-09 23:30:12 +01:00
7cda2d415f
gnu: r-biosigner: Update to 1.18.2.
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* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
2020-12-09 23:30:12 +01:00
4714787793
gnu: r-biocneighbors: Update to 1.8.2.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2.
[propagated-inputs]: Remove r-rcppannoy.
2020-12-09 23:30:12 +01:00
ebf11de4e3
gnu: r-diffbind: Update to 3.0.8.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
2020-12-09 12:12:48 +01:00
4617cc7fd5
gnu: r-rhtslib: Propagate zlib.
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* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
2020-12-09 12:12:48 +01:00
Ricardo Wurmus
zimoun
Mădălin Ionel Patrașcu