8226771a33
gnu: go-1.14: Fix building on some platforms.
...
* gnu/packages/golang.scm (go-1.14)[arguments]: In custom 'prebuild
phase also search for loader without 'linux' in the string. In custom
'build phase set the GOCACHE directory.
[native-inputs]: On systems which don't have support in go-1.4 use
gccgo-10 instead.
2021-12-12 14:25:45 +02:00
492dac2fb0
gnu: python-patsy: Update to 0.5.2.
...
* gnu/packages/statistics.scm (python-patsy): Update to 0.5.2.
[arguments]: Run tests conditionally; run tests with pytest.
[native-inputs]: Replace python-nose with python-pytest.
2021-12-12 12:41:54 +01:00
3fc12128c2
gnu: remmina: Build with libsoup 2.
...
* gnu/packages/vnc.scm (remmina)[inputs]: Replace libsoup with
libsoup-minimal-2.
2021-12-12 12:41:54 +01:00
4992858e21
gnu: salmon: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (salmon): Update to 1.6.0.
[inputs]: Update pufferfish sources.
2021-12-12 12:41:54 +01:00
c12c7f1284
gnu: sbcl-geco: Update to 2.1.2.
...
* gnu/packages/lisp-xyz.scm (sbcl-geco): Update to 2.1.2.
[home-page]: Update home page.
[license]: Fix license.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-12 10:24:52 +01:00
d1072f21ba
gnu: sbcl-aserve: Add HTML5 elements to htmlgen.
...
* gnu/patches/sbcl-aserve-add-HTML-5-elements.patch: New file.
* gnu/patches/sbcl-aserve-fix-rfe12668.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/lisp-xyz.scm (sbcl-aserve)[source]: Use them.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-12 10:24:52 +01:00
8778ff2aec
gnu: dunst : Update to 1.7.3.
...
* gnu/packages/dunst.scm (dunst): Update to 1.7.3.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-12 10:24:52 +01:00
5c3f5c1524
gnu: Use license prefix in (gnu packages sdl).
...
* gnu/packages/sdl.scm (sdl, sdl2, libmikmod, sdl-gfx, sdl-image,
sdl-mixer, sdl-net, sdl-pango, sdl-ttf, guile-sdl, guile-sdl2,
sdl2-cs) [license]: Use license prefix.
2021-12-12 11:21:02 +02:00
70fba40048
gnu: serveez: Update to 0.3.0.
...
* gnu/packages/serveez.scm (serveez): Update to 0.3.0.
[source]: Download using lzip tarball.
[native-inputs]: Add lzip.
[inputs]: Replace guile-2.0 with guile-2.2.
2021-12-12 10:59:07 +02:00
cec4b2dcbc
gnu: guile-sdl: Update to 0.5.3.
...
* gnu/packages/sdl.scm (guile-sdl): Update to 0.5.3.
[source]: Use lzip tarball.
[native-inputs]: Add lzip.
2021-12-12 10:59:07 +02:00
ab82bed5d1
gnu: guile-dsv: Update to 0.4.1
...
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.4.1.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-12 09:22:07 +01:00
8bb6c7425d
gnu: python-moto: Honor #:tests? flag.
...
* gnu/packages/python-xyz.scm (python-moto)[arguments]: Adjust custom 'check
phase to honor the #:tests? flag.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:55 +01:00
7a34e56dc8
gnu: python-moto: Update to 2.2.12.
...
* gnu/packages/python-xyz.scm (python-moto): Update to 2.2.12.
[arguments]: Make some cosmetic changes.
<#:phases>: Don't return #t. Support cross-compilation in
'patch-hardcoded-executable-names. Skip more tests and simplify the custom
'check phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:55 +01:00
365260f4cd
gnu: Update awscli, python-boto3 and python-botocore.
...
awscli, botocore and boto3 work together and typically require matching
versions.
* gnu/packages/python-xyz.scm (python-botocore): Update to 1.22.11.
(python-boto3): Update to 1.19.11.
[native-inputs]: Add python-pytest.
* gnu/packages/python-web.scm (awscli): Update to 1.21.11.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:55 +01:00
9660c2f158
gnu: python-s3transfer: Honor #:tests? flag.
...
* gnu/packages/python-web.scm (python-s3transfer)[arguments]: Adjust custom
'check phase to honor the #:tests? flag.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:55 +01:00
32135392dd
gnu: python-s3transfer: Update to 0.5.0.
...
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.5.0.
[arguments]<#:phases>: Remove 'patch phase because the issue was fixed
upstream. Don't return #t in custom 'check phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:54 +01:00
dbf5d938c5
gnu: python-cfn-lint: Honor #:tests? flag.
...
* gnu/packages/python-web.scm (python-cfn-lint)[arguments]: Make some cosmetic
changes. Adjust custom 'check phase to honor the #:tests? flag.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:54 +01:00
f3416ebc2e
gnu: python-cfn-lint: Update to 0.54.3.
...
* gnu/packages/python-web.scm (python-cfn-lint): Update to 0.54.3.
[home-page]: Follow redirect.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:54 +01:00
589b9d6f29
gnu: python-aws-sam-translator: Update to 1.40.0.
...
* gnu/packages/python-web.scm (python-aws-sam-translator): Update to 1.40.0.
[arguments]<#:phases>: Don't return #t.
[home-page]: Follow redirect.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:54 +01:00
7e9720eca4
gnu: python-vcrpy: Update to 4.1.1.
...
* gnu/packages/python-xyz.scm (python-vcrpy): Update to 4.1.1.
[arguments]: Replace 'check phase to run unit tests.
[native-inputs]: Add required dependencies.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:54 +01:00
8a1de89432
gnu: Add python-ipaddress.
...
* gnu/packages/python-xyz.scm (python-ipaddress): New variable;
(python2-ipaddress): Use package-with-python2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:54 +01:00
ea18b4c529
gnu: Add ascii.
...
* gnu/packages/shellutils.scm (ascii): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12 00:27:53 +01:00
d5cfca23e3
gnu: java-log4j-api: Add cpe-name.
...
* gnu/packages/java.scm (java-log4j-api)[properties]: Add cpe-name.
2021-12-12 00:00:35 +01:00
8c989e92b0
gnu: java-log4j-api: Update to 2.15.0.
...
Includes fixes for CVE-2017-5645, CVE-2020-9488 and CVE-2021-44228.
* gnu/packages/java.scm (java-log4j-api): Update to 2.15.0.
(java-log4j-core, java-log4j-1.2-api)[inputs]: Adjust accordingly.
2021-12-12 00:00:31 +01:00
514deaa8d4
gnu. java-lmax-disruptor: Update to 3.4.4.
...
* gnu/packages/java.scm (java-lmax-disruptor): Update to 3.4.4.
[source]: Use git-fetch instead of url-fetch.
2021-12-12 00:00:27 +01:00
684e22dce2
gnu: Add java-conversant-disruptor.
...
* gnu/packages/java.scm (java-conversant-disruptor): New variable.
2021-12-12 00:00:22 +01:00
b049f5bbea
gnu: Add java-jctools-core-1.
...
* gnu/packages/java.scm (java-jctools-core-1): New variable.
2021-12-12 00:00:18 +01:00
5259513d5e
gnu: java-jansi: Update to 2.4.0.
...
* gnu/packages/java.scm (java-jansi): Update to 2.4.0.
(java-jansi-1): New variable.
[source]: Use git-fetch instead of url-fetch.
(java-jline-2)[inputs]: Use java-jansi-1.
* gnu/packages/groovy.scm (java-groovy-bootstrap)[inputs]: Use java-jansi-1.
2021-12-12 00:00:06 +01:00
8c6508b928
gnu: icedove: Update to 91.4.0 [fixes CVE-2021-43528].
...
* gnu/packages/gnuzilla.scm (icedove): Update to 91.4.0.
2021-12-11 17:28:59 +01:00
2e28b450d5
gnu: emacs-telega: Update to 0.7.15-1.b4a5e20.
...
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to
0.7.15-1.b4a5e20.
* gnu/packages/patches/emacs-telega-path-placeholder.patch: Match patch with
newer source code.
* gnu/packages/patches/emacs-telega-test-env.patch: Match patch with newer
source code.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-11 16:08:04 +01:00
649ab3fe2d
gnu: tdlib: Update to 1.7.10.
...
* gnu/packages/messaging.scm (tdlib): Update to 1.7.10.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-11 16:07:36 +01:00
ebff268bfc
gnu: Add vivid.
...
* gnu/packages/rust-apps.scm (vivid): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-11 15:46:12 +01:00
c11c1080de
gnu: carla: Update to 2.4.1.
...
* gnu/packages/audio.scm (carla): Update to 2.4.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-11 15:37:51 +01:00
610645b175
gnu: i3status-rust: Add missing inputs.
...
* gnu/packages/rust-apps (i3status-rust)[inputs]: Add alsa-utils,
bash-minmal, coreutils, ibus, iproute, kdeconnect, lm-sensors, setxkbmap,
speedtest-cli, xdg-utils, xrandr.
[arguments]: Add phase to wrap-program bin/i3status-rs.
* gnu/local.mk: Add patch (change not applied in
575fcd3045
2021-12-11 15:35:44 +01:00
bf189fd2b5
gnu: gmnisrv: Update to 1.0.
...
* gnu/packages/web.scm (gmnisrv): Update to 1.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-11 15:33:42 +01:00
58dbf4c930
gnu: Add optionmatrix.
...
* gnu/packages/finance.scm (optionmatrix): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 14:37:33 +01:00
f00690c0ed
gnu: Add s9fes.
...
* gnu/packages/scheme.scm (s9fes): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 14:37:33 +01:00
0d8c801d83
gnu: pdfarranger: Update to 1.8.1.
...
* gnu/packages/pdf.scm (pdfarranger): Update to 1.8.1.
2021-12-11 14:27:37 +01:00
60dc7a7925
gnu: emacs-webpaste: Update to 3.2.2.
...
* gnu/packages/emacs-xyz.scm (emacs-webpaste): Update to 3.2.2.
2021-12-11 14:25:31 +01:00
b3a801330e
gnu: sbcl-slime-swank: Update to 2.26.1.
...
* gnu/packages/lisp-xyz.scm (sbcl-slime-swank): Update to 2.26.1.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 11:47:51 +01:00
0e14da5475
gnu: sbcl-mgl-pax: Update home page.
...
* gnu/packages/lisp-xyz.scm (sbcl-mgl-pax)[home-page]: Update home page.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 11:29:09 +01:00
acf44174c9
gnu: Add cl-mgl-gpr.
...
* gnu/packages/lisp-xyz.scm (cl-mgl-gpr, ecl-mgl-gpr, sbcl-mgl-gpr):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 11:26:14 +01:00
0191fedb7f
gnu: Add cl-random.
...
* gnu/packages/lisp-xyz.scm (cl-random, ecl-cl-random, sbcl-cl-random):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 11:18:52 +01:00
17bbd5ae07
gnu: Add cl-rmath.
...
* gnu/packages/lisp-xyz.scm (cl-rmath, ecl-cl-rmath, sbcl-cl-rmath):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 11:11:23 +01:00
e8fa25f6a4
gnu: Add cl-lla.
...
* gnu/packages/lisp-xyz.scm (cl-lla, ecl-lla, sbcl-lla): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 11:08:08 +01:00
163f7831c4
gnu: Add cl-num-utils.
...
* gnu/packages/lisp-xyz.scm (cl-num-utils, ecl-cl-num-utils,
sbcl-cl-num-utils): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 11:03:41 +01:00
d3b5414691
gnu: Add cl-core-gp.
...
* gnu/packages/lisp-xyz.scm (cl-core-gp, ecl-core-gp, sbcl-core-gp):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 10:46:16 +01:00
e9c6be1126
gnu: Add cl-zsort.
...
* gnu/packages/lisp-xyz.scm (cl-zsort, ecl-zsort, sbcl-zsort): New
variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-11 10:38:59 +01:00
01a007f467
gnu: Add emacs-cc-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-cc-mode): New variable.
2021-12-11 09:19:30 +01:00
cfdf66e6bf
gnu: Add gprof2dot.
...
* gnu/packages/graphviz.scm (gprof2dot): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 23:47:01 +01:00
f08ce1d9ce
gnu: Add sunclock.
...
* gnu/packages/astronomy.scm (sunclock): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 23:40:08 +01:00
f489116352
gnu: Add sfm.
...
* gnu/packages/suckless.scm (sfm): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 23:34:36 +01:00
6a53a7f36c
gnu: lagrange: Update to 1.9.2.
...
* gnu/packages/web-browsers.scm (lagrange): Update to 1.9.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 23:28:13 +01:00
e64eb96410
gnu: stagit: Update to 1.0.
...
* gnu/packages/version-control.scm (stagit): Update to 1.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 23:25:52 +01:00
e4aad0813b
gnu: emacs-dpd: Update to 0.2.1.
...
* gnu/packages/emacs-xyz.scm (emacs-dpd): Update to 0.2.1.
2021-12-10 23:15:58 +01:00
32750e8c3e
Merge remote-tracking branch 'signed/master' into core-updates
2021-12-10 21:49:25 +01:00
e1e3230312
gnu: privoxy: Update to 3.0.33.
...
* gnu/packages/tor.scm (privoxy): Update to 3.0.33.
[arguments]: Don't explicitly return #t from phases.
2021-12-10 18:30:55 +01:00
6104071e48
gnu: gnome-maps: Upgrade to 41.2.
...
* gnu/packages/geo.scm (gnome-maps): Upgrade to 41.2.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-10 18:17:45 +01:00
502d4b5d62
gnu: gnome-maps: Build with libsoup 2.
...
* gnu/packages/geo.scm (gnome-maps) [inputs]: Use libsoup-minimal-2 instead of
libsoup and webkitgtk-with-libsoup2 instead of webkitgtk.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-10 18:17:45 +01:00
af067eaff4
gnu: godot: Update to 3.4.
...
* gnu/packages/game-development.scm (godot): Update to 3.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-10 11:18:59 -05:00
53d69a60e7
gnu: superstarfighter: Update to 0.6.5.
...
* gnu/packages/games.scm (superstarfighter): Update to 0.6.5.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-10 11:18:55 -05:00
6cb805dcce
gnu: Add eg25-manager.
...
* gnu/packages/firmware.scm (eg25-manager): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-10 15:32:45 +01:00
6a887e4909
gnu: Add python-sphinxext-opengraph.
...
* gnu/packages/sphinx.scm (python-sphinxext-opengraph): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-10 15:32:45 +01:00
dc5ace95d3
gnu: Add python-sphinx-prompt.
...
* gnu/packages/sphinx.scm (python-sphinx-prompt): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-10 15:32:45 +01:00
7c2d84df1c
gnu: sendgmail: Don't limit domain name of sender.
...
There are three open pull requests adding this functionality:
- https://github.com/google/gmail-oauth2-tools/pull/17 (October 2019)
- https://github.com/google/gmail-oauth2-tools/pull/26 (May 2020)
- https://github.com/google/gmail-oauth2-tools/pull/37 (May 2021)
(The patch here is identical to #26 , so I just closed this one.)
Meanwhile, the most recent commit to the upstream repository was in
May 2019: that was the commit that first added `sendgmail`.
This commit adjusts Guix's `sendgmail`, following Postel's advice,
to make the command "liberal in its receiving behavior" (RFC 760):
it always accepts email addresses with any domain name, as in #26 ,
and it accepts (and ignores) the `-gsuite` flag used in #17 .
* gnu/packages/patches/sendgmail-remove-domain-restriction.patch:
New file. This is the patch from #26 .
* gnu/packages/patches/sendgmail-accept-ignored-gsuite-flag.patch:
New file, based on #17 .
* gnu/local.mk (dist_patch_DATA): Add the new patches.
* gnu/packages/mail.scm (sendgmail)[source]: Apply the new patches.
Increment the "revision" argument to `git-version` from 0 to 1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-10 15:32:45 +01:00
5cf2c889c9
gnu: sendgmail: Rename package to match command.
...
Suggested by Ludo’ in <https://issues.guix.gnu.org/50420#3 >.
* gnu/packages/golang.scm
(go-github-com-google-gmail-oauth2-tools-go-sendgmail): Move to ...
* gnu/packages/mail.scm (sendgmail): ... this variable.
Change `propagated-inputs` to `inputs`.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-10 15:32:45 +01:00
f0adb870ac
gnu: Add smlnj.
...
* gnu/packages/sml.scm (smlnj): New variable.
Co-authored-by: Brett Gilio <brettg@gnu.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-10 15:32:45 +01:00
18c406df97
gnu: ocaml-ppx-expect: Update to 0.14.2.
...
* gnu/packages/ocaml.scm (ocaml-ppx-expect): Update to 0.14.2.
2021-12-10 12:51:36 +01:00
94226686fe
gnu: ocaml-migrate-parsetree: Update to 2.3.0.
...
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): Update to 2.3.0.
2021-12-10 12:51:32 +01:00
6e06846c9d
gnu: ocamlformat: Update to 0.20.0.
...
* gnu/packages/ocaml.scm (ocamlformat): Update to 0.20.0.
2021-12-10 12:51:28 +01:00
af365f0001
gnu: Add ocaml-either.
...
* gnu/packages/ocaml.scm (ocaml-either): New variable.
2021-12-10 12:51:22 +01:00
5ad2dcecdc
gnu: ocaml-fix: Update to 20211125.
2021-12-10 12:51:06 +01:00
a66642f744
gnu: cdrkit-libre: Fix cross-compiling.
...
* gnu/packages/cdrom.scm (cdrkit-libre)[source]: Add patch.
* gnu/packages/patches/cdrkit-libre-cross-compile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-12-10 12:57:35 +02:00
af5fa4d202
gnu: Add ccwl.
...
* gnu/packages/bioinformatics.scm (ccwl): New variable.
2021-12-10 15:26:59 +05:30
8908c82bf9
gnu: dosfstools: Fix cross-compilation.
...
Reported by Florian Hoertlehner.
* gnu/packages/disk.scm (dosfstools)[arguments]: Correctly refer to the
build output. Use cc-for-target.
2021-12-10 10:58:56 +02:00
549aa66e46
gnu: notmuch: Update to 0.34.2.
...
* gnu/packages/mail.scm (notmuch): Update to 0.34.2.
2021-12-10 09:01:59 +01:00
c0b6036247
gnu: emacs-which-key: Update to 3.5.4.
...
* gnu/packages/emacs-xyz.scm (emacs-which-key): Update to 3.5.4.
2021-12-10 08:55:50 +01:00
4199725ac8
gnu: emacs-ebib: Update to 2.34.
...
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.34.
2021-12-10 08:54:21 +01:00
e1973ae74b
gnu: gajim: Fix typo.
...
* gnu/packages/messaging.scm (gajim)[arguments]: Add missing brackets.
All typos are my own.
2021-12-10 04:54:06 +01:00
4bf8348ff3
gnu: gajim: Restore 'disable-failing-tests phase.
...
Gajim consistently builds on my machines & bayfront, whilst
raghavgururajan reports the exact same derivation consistently failing
with the commented error. Odd.
* gnu/packages/messaging.scm (gajim)[arguments]: Restore the old
'disable-failing-tests phase.
2021-12-10 04:48:29 +01:00
1825e45484
gnu: gpxsee: Update to 10.0.
...
* gnu/packages/gps.scm (gpxsee): Update to 10.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:45:53 +01:00
2fa1bcd971
gnu: nnn: Update to 4.4.
...
* gnu/packages/admin.scm (nnn): Update to 4.4.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:44:01 +01:00
603d51829f
gnu: emacs-parsebib: Update to 3.1.
...
* gnu/packages/emacs-xyz.scm (emacs-parsebib): Update to 3.1.
2021-12-10 00:33:53 +01:00
3d90a81313
gnu: rosegarden: Update to 21.12.
...
* gnu/packages/music.scm (rosegarden): Update to 21.12.
2021-12-10 00:32:12 +01:00
a3cb34f7c5
gnu: pyzo: Update to 4.11.7.
...
* gnu/packages/python-xyz.scm (pyzo): Update to 4.11.7.
2021-12-10 00:28:45 +01:00
2f2b4a0f81
gnu: Add rust-spotify-tui-0.25.
...
* gnu/packages/crates-io.scm (rust-spotify-tui-0.25): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:29 +01:00
f15b6ae03a
gnu: rust-arboard-1: Update to 1.2.1.
...
* gnu/packages/crates-io.scm (rust-arboard-1): Update to 1.2.1.
[arguments](cargo-inputs): Add rust-env-logger-0.8, rust-simple-logger-1,
rust-wl-clipboard-rs-0.4 and rust-x11rb-0.8. Remove rust-xcb-0.9.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:28 +01:00
04cb4fcb5e
gnu: Add rust-wl-clipboard-rs-0.4.
...
* gnu/packages/crates-io.scm (rust-wl-clipboard-rs-0.4): New variable.
* gnu/packages/patches/rust-wl-clipboard-rs-newer-wl.patch: New file.
* gnu/local.mk: Add patch.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:28 +01:00
cf42c98929
gnu: Add rust-stderrlog-0.4.
...
* gnu/packages/crates-io.scm (rust-stderrlog-0.4): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:27 +01:00
cbd745912c
gnu: Add rust-thread-local-0.3.4.
...
* gnu/packages/crates-io.scm (rust-thread-local-0.3.4): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:27 +01:00
fe8f7651d1
gnu: Add rust-simple-logger-1.
...
* gnu/packages/crates-io.scm (rust-simple-logger-1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:26 +01:00
149dd92888
gnu: Add rust-atty-0.2.11.
...
* gnu/packages/crates-io.scm (rust-atty-0.2.11): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:26 +01:00
1c7305adff
gnu: rust-anyhow-1: Update to 1.0.46.
...
* gnu/packages/crates-io.scm (rust-anyhow-1): Update to 1.0.46.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:26 +01:00
bff2009149
gnu: Add rust-tree-magic-0.2.
...
* gnu/packages/crates-io.scm (rust-tree-magic-0.2): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:25 +01:00
35cba1790f
gnu: Add rust-x11rb-0.8.
...
* gnu/packages/crates-graphics.scm (rust-x11rb-0.8): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:25 +01:00
f6f285270a
gnu: Add rust-winapi-wsapoll-0.1.
...
* gnu/packages/crates-io.scm (rust-winapi-wsapoll-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:24 +01:00
4f38c1f57e
gnu: Add rust-rspotify-0.10.
...
* gnu/packages/crates-io.scm (rust-rspotify-0.10): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:24 +01:00
76eadbeb89
gnu: Add rust-derive-builder-0.7.
...
* gnu/packages/crates-io.scm (rust-derive-builder-0.7): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:24 +01:00
a4d35d0c78
gnu: Add rust-derive-builder-core-0.5.
...
* gnu/packages/crates-io.scm (rust-derive-builder-core-0.5): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:23 +01:00
39e38804f2
gnu: Add rust-dotenv-0.13
...
* gnu/packages/crates-io.scm (rust-dotenv-0.13): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:23 +01:00
d8c0d955a4
gnu: Add rust-tui-0.16.
...
* gnu/packages/crates-io.scm (rust-tui-0.16): New variable.
(rust-tui-0.15): Inherit from above.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:22 +01:00
ae01172fb3
gnu: Add rust-argh-0.1.
...
* gnu/packages/crates-io.scm (rust-argh-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:22 +01:00
2e625d0b2d
gnu: Add rust-argh-derive-0.1.
...
* gnu/packages/crates-io (rust-argh-derive-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:21 +01:00
dfdcd375a8
gnu: Add rust-argh-shared-0.1.
...
* gnu/packages/crates-io.scm (rust-argh-shared-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:21 +01:00
4665e6a73b
gnu: opam: Update to 2.1.2.
...
* gnu/packages/ocaml.scm (opam): Update to 2.1.2.
2021-12-09 23:59:21 +01:00
77ea796d1b
gnu: pplacer: Fix build.
...
* gnu/packages/bioinformatics.scm (pplacer)[inputs]: Replace gsl with
gsl-static.
* gnu/packages/ocaml.scm (ocaml4.07-gsl-1)[inputs]: Same.
2021-12-09 23:17:26 +02:00
1da7f9089f
gnu: Add gsl-static.
...
* gnu/packages/maths.scm (gsl-static): New variable.
2021-12-09 23:17:26 +02:00
1e81140cb5
gnu: python-dendropy: Skip additional test.
...
* gnu/packages/bioinformatics.scm (python-dendropy)[arguments]: Adjust
custom 'skip-broken-tests phase to skip additional test.
2021-12-09 22:43:42 +02:00
13bc332ed5
gnu: mumi: Update to 0.0.1-6.8a45281.
...
* gnu/packages/mail.scm (mumi): Update to 0.0.1-6.8a45281.
[arguments]: Remove trailing #T.
2021-12-09 19:17:22 +01:00
0e8826824c
gnu: python-rich: Remove optional input ipywidgets.
...
* gnu/packages/python-xyz.scm (python-rich)[propagated-inputs]: Remove
python-ipywidgets.
2021-12-09 19:17:21 +01:00
4709decb45
gnu: r-minimal: Remove extraneous references.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Remove references to
native build-time tools.
2021-12-09 19:17:16 +01:00
d974b3f860
gnu: uBlock Origin: Update to 1.39.2.
...
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.39.2.
2021-12-09 17:39:29 +01:00
4cb5f0daf2
gnu: ungoogled-chromium: Update to 96.0.4664.93-1.
...
* gnu/packages/chromium.scm (%chromium-version): Set to 96.0.4664.93.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2021-12-09 17:39:29 +01:00
f0cc0e8f30
gnu: imp: Build with default cmake.
...
* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove cmake flag.
2021-12-09 14:39:22 +02:00
2648d3207f
gnu: repeat-masker: Update to 4.1.2-p1.
...
* gnu/packages/bioinformatics.scm (repeat-masker): Update to 4.1.2-p1.
2021-12-09 12:10:18 +01:00
0bf3c9abaa
gnu: metabat: Update to 2.15.
...
* gnu/packages/bioinformatics.scm (metabat): Update to 2.15.
[source]: Remove patch.
[build-system]: Use cmake-build-system.
[arguments]: Adjust to new build system.
* gnu/packages/patches/metabat-fix-compilation.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-09 11:50:10 +01:00
ab445eb4b7
gnu: python2-scikit-learn: Disable one more test.
...
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Do not
inherit; remove obsolete 'make-files-writable phase; disable one more failing
test in 'check phase.
2021-12-09 11:17:45 +01:00
1c7914009a
gnu: seek: Update to 1-1.196ed4c.
...
* gnu/packages/bioinformatics.scm (seek): Update to 1-1.196ed4c.
[source]: Fetch from github.
[build-system]: Use cmake-build-system.
[arguments]: Remove all custom phases; replace 'check phase; disable tests;
set configure flags.
[inputs]: Add apache-thrift:include, apache-thrift:lib, and python.
[native-inputs]: Remove autoconf, automake, and perl; add pkg-config.
2021-12-09 11:17:45 +01:00
4fb363c906
gnu: libsvm: Install header and library.
...
* gnu/packages/machine-learning.scm (libsvm)[arguments]: Add build phase
'build-lib; also install header file and shared library in the 'install phase.
2021-12-09 11:17:45 +01:00
26e26bc819
gnu: miso: Update to 0.5.4-1.b714021.
...
* gnu/packages/bioinformatics.scm (miso): Update to 0.5.4-1.b714021.
[source]: Fetch via git; simplify snippet.
[inputs]: Replace samtools with samtools-1.2.
[home-page]: Update to new location.
2021-12-09 11:17:45 +01:00
0b8a75cc3a
gnu: Add samtools-1.2.
...
* gnu/packages/bioinformatics.scm (samtools-1.2): New variable.
2021-12-09 11:17:45 +01:00
f505f588a7
gnu: Add htslib-for-samtools-1.2.
...
* gnu/packages/bioinformatics.scm (htslib-for-samtools-1.2): New variable.
2021-12-09 11:17:45 +01:00
3ebcd637a5
gnu: python2-scipy: Override native inputs.
...
* gnu/packages/python-science.scm (python2-scipy)[native-inputs]: Override;
replace gfortran with gfortran-7; add gcc-7.
2021-12-09 11:17:45 +01:00
3cd37c94bd
gnu: python2-matplotlib: Fix mpl_toolkits module.
...
* gnu/packages/python-xyz.scm (python2-matplotlib)[arguments]: Add phase
'create-init-file; restore 'sanity-check phase.
2021-12-09 11:17:45 +01:00
b69156ef30
gnu: Add gfortran-7.
...
* gnu/packages/gcc.scm (gfortran-7): New variable.
2021-12-09 11:17:45 +01:00
bfaf6c1801
gnu: emacs-evil-magit: Remove deprecated package.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-magit): Delete variable.
evil-magit has been consolidated into evil-collection. The package has been
removed from MELPA since February. See here:
<https://github.com/emacs-evil/evil-magit >.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-09 09:17:35 +01:00
1490e02ea2
gnu: Add emacs-dpd.
...
* gnu/packages/emacs-xyz.scm (emacs-dpd): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-09 09:13:33 +01:00
479742f195
gnu: valeronoi: Update to 0.1.6.
...
* gnu/packages/engineering.scm (valeronoi): Update to 0.1.6.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-09 09:07:24 +01:00
38ea869b20
gnu: tiramisu: Update to 2.0.20211107.
...
* gnu/packages/gnome-xyz.scm (tiramisu): Update to 2.0.20211107.
[native-inputs]: Add vala.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-08 23:10:25 -05:00
37186ec462
gnu: isc-dhcp: Update bundled BIND to 9.11.36 [fixes CVE-2021-25219].
...
* gnu/packages/admin.scm (isc-dhcp)[inputs]:
Update bundled BIND to 9.11.36.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-12-09 01:24:37 +01:00
4ca0e9d5f7
gnu: bind: Update to 9.16.23 [fixes CVE-2021-25218, CVE-2021-25219].
...
* gnu/packages/dns.scm (isc-bind): Update to 9.16.23.
[source]: Add patch.
* gnu/packages/patches/bind-re-add-attr-constructor-priority.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-12-09 01:24:37 +01:00
e5e307b676
Revert "installer: Make LUKS2 the default format for encrypted devices"
...
This reverts commit a82e9f45fdhttps://logs.guix.gnu.org/guix/2021-12-08.log#231815 >.
2021-12-08 23:23:19 +01:00
95a4965f2d
gnu: python-slepc4py: Update to 3.16.1.
...
This is a followup 5b4d1e57b6
2021-12-08 23:04:00 +01:00
fe55ae488b
gnu: python-petsc4py: Update to 3.16.1.
...
This is a followup to 07ac13a26a
2021-12-08 22:59:44 +01:00
3b8825421b
gnu: geeqie: Fix X11 error at startup.
...
Fixes <https://issues.guix.gnu.org/52089 >.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.
Patch provided by John Kehayias <john.kehayias@protonmail.com>.
* gnu/packages/patches/geeqie-clutter.patch: New file.
* gnu/packages/image-viewers.scm (geeqie)[sources]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-12-08 22:35:03 +01:00
0ba4e94e84
gnu: Add realmd.
...
* gnu/packages/admin.scm (realmd): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-08 14:26:39 -05:00
8ac2d303e4
gnu: go-github-com-alcortesm-tgz: Don't reset gzip timestamps.
...
The tgz files are committed test fixtures, so don't reset their timestamps.
* gnu/packages/golang.scm (go-github-com-alcortesm-tgz)[arguments]:
Remove 'make-git-checkout-writable' phase. Delete 'reset-gzip-timestamps' phase
instead.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-08 13:35:34 -05:00
93c7a5103d
gnu: Remove go-gopkg.in-check.v1.
...
This package is a duplicate of go-gopkg-in-check-v1 in golang.scm,
has no binaries, and has no dependents, so remove it.
* gnu/packages/check.scm (go-gopkg.in-check.v1): Remove variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-08 13:35:34 -05:00
77c8382bb6
gnu: mumps: Allow compilation with GCC 10.
...
Following the suggestion at
<https://community.freefem.org/t/compline-on-macos-10-15-6/543 >.
* gnu/packages/maths.scm (mumps)[arguments]: In 'configure' phase, add
'-fallow-argument-mismatch' to 'OPTF'.
2021-12-08 18:56:53 +01:00
49599fab56
services: %desktop-services: Use SDDM rather than GDM on non-x86_64.
...
This works around the fact that Rust is currently unavailable in Guix on
platforms other than x86_64-linux:
https://lists.gnu.org/archive/html/guix-devel/2021-11/msg00197.html
* gnu/services/desktop.scm (desktop-services-for-system): New
procedure.
(%desktop-services): Turn into a macro.
2021-12-08 18:56:52 +01:00
24ead149db
system: Mark 'services' field as thunked.
...
This allows us to make services dependent on (%current-system), for
example.
* gnu/system.scm (<operating-system>)[services]: Mark as thunked.
2021-12-08 18:56:47 +01:00
20e6446a68
gnu: idutils: Fix build with glibc 2.33.
...
* gnu/packages/idutils.scm (idutils)[source]: Remove reference to 'gets'
from "lib/stdio.in.h".
2021-12-08 18:55:58 +01:00
9bac41c2b8
gnu: fzf: Wrap with a compliant find(1).
...
* gnu/packages/terminals.scm (fzf)[inputs]: Add findutils.
[arguments]: Wrap the ‘fzf’ executable with its /bin directory in $PATH.
Addresses <https://issues.guix.gnu.org/52372 >.
2021-12-08 18:13:48 +01:00
a59abcb350
gnu: libtorrent-rasterbar: Build with default cmake.
...
* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Remove
cmake flag.
2021-12-08 17:36:35 +02:00
00ae87c41a
gnu: tadbit: Update to 1.0.1-1.5c4c1dd.
...
* gnu/packages/bioinformatics.scm (tadbit): Update to 1.0.1-1.5c4c1dd.
[arguments]: Remove trailing #T from build phases; pass -fcommon to test
binaries; run tests conditionally.
2021-12-08 16:32:37 +01:00
7f4d25f86e
gnu: python2-sphinx: Remove websupport test.
...
* gnu/packages/sphinx.scm (python2-sphinx)[arguments]: Remove websupport test
file.
2021-12-08 16:13:08 +01:00
68619cad28
gnu: python2-sphinxcontrib-websupport: Downgrade to 1.1.2.
...
* gnu/packages/sphinx.scm (python2-sphinxcontrib-websupport): Downgrade to
1.1.2.
[arguments]: Override; delete 'sanity-check phase.
[propagated-inputs]: Override and add python2-six.
(python-sphinxcontrib-websupport)[properties]: Record python2-variant.
2021-12-08 16:13:08 +01:00
a4a7c78f68
gnu: python2-jinja2: Downgrade to 2.11.3
...
* gnu/packages/python-xyz.scm (python2-jinja2): Downgrade to the last version
supporting Python 2.
(python-jinja2)[properties]: Record python2-variant.
2021-12-08 16:13:08 +01:00
852ad65bd4
gnu: fastboot: Fix ‘--version’ output.
...
* gnu/packages/android.scm (fastboot)[arguments]: Replace broken
‘git rev-parse’ shell command with the actual package VERSION.
Reported by kwjc on #guix.
2021-12-08 15:42:33 +01:00
5573d98f81
gnu: rtl8821ce-linux-module: Update to 0.0.0-4-ca204c6.
...
Fixes compatibility with linux-libre@5.15:
[…]/source/core/rtw_br_ext.c:20:11: fatal error: net/ipx.h:
No such file or directory
#include <net/ipx.h>
^~~~~~~~~~~
compilation terminated.
* gnu/packages/linux.scm (rtl8821ce-linux-module):
Update to 0.0.0-4-ca204c6.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-12-08 15:42:33 +01:00
14ed9b049e
gnu: python2-markupsafe: Downgrade to 1.1.1.
...
* gnu/packages/python-xyz.scm (python2-markupsafe): Downgrade to 1.1.1,
because that's the last version to support Python 2.
2021-12-08 14:43:38 +01:00
c8060055de
gnu: ocaml-mcl: Add -fcommon to compiler flags.
...
* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon.
2021-12-08 14:31:54 +01:00
b835d10d61
gnu: paml: Pass -fcommon to compiler.
...
* gnu/packages/bioinformatics.scm (paml)[arguments]: Set CFLAGS.
2021-12-08 14:31:54 +01:00
2157d82ed3
gnu: paml: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (paml)[arguments]: Remove trailing #T from
build phases.
2021-12-08 14:31:54 +01:00
76b39f03d2
gnu: sambamba: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (sambamba)[arguments]: Remove trailing #T
from build phases.
2021-12-08 14:31:54 +01:00
62da1b34d1
gnu: discrover: Add texlive-fonts-ec to inputs.
...
* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Add
texlive-fonts-ec.
2021-12-08 14:31:54 +01:00
62e196608c
gnu: discrover: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (discrover)[arguments]: Remove trailing #T
from build phases.
2021-12-08 14:31:54 +01:00
1f63c46a1c
gnu: tbsp: Update to 1.0.0-2.dc30c03.
...
* gnu/packages/bioinformatics.scm (tbsp): Update to 1.0.0-2.dc30c03.
[arguments]: Relax requirement on matplot. This may turn out to be a mistake.
[inputs]: Replace python-biopython with python-biopython-1.73.
2021-12-08 14:31:54 +01:00
1f7c06965c
gnu: mantis: Update to 0.1-2.b6979a2.
...
* gnu/packages/bioinformatics.scm (mantis): Update to 0.1-2.b6979a2.
[arguments]: Disable the use of SSE4.2 instructions.
[native-inputs]: Build with GCC 7.
2021-12-08 14:31:53 +01:00
738f22fa06
gnu: imp: Disable tests.
...
* gnu/packages/bioinformatics.scm (imp)[arguments]: Disable unreliable test
suite.
2021-12-08 14:31:53 +01:00
acfbb53222
gnu: snap-aligner: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (snap-aligner): Update to 2.0.0.
2021-12-08 14:31:53 +01:00
42a7b5215b
gnu: snap-aligner: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Remove trailing #T
from 'install phase.
2021-12-08 14:31:53 +01:00
7c58677a29
gnu: snap-aligner: Run tests conditionally.
...
* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Respect TESTS?
option.
2021-12-08 14:31:53 +01:00
298a8d0b89
gnu: khmer: Cythonize source files.
...
* gnu/packages/bioinformatics.scm (khmer)[source]: Remove generated files.
[arguments]: Add phase 'do-use-cython to patch the setup.py to generate cpp
files from Cython sources; add 'build-extensions phase; replace 'check phase.
2021-12-08 14:31:53 +01:00
9a19e8f609
gnu: cwltool: Update to 3.1.20211107152837.
...
* gnu/packages/bioinformatics.scm (cwltool): Update to 3.1.20211107152837.
[arguments]: Adjust phase 'loosen-version-restrictions; remove trailing #T
from build phases; fix /bin/sh invocations in test files.
2021-12-08 14:31:52 +01:00
ac53cbb368
gnu: monero: Improve check phase.
...
* gnu/packages/finance.scm (monero)[arguments]: Take 'tests?' parameter
into consideration in 'check' phase.
2021-12-08 13:31:37 +01:00
3ccf33bbe6
gnu: monero-gui: Update to 0.17.3.0.
...
* gnu/packages/finance.scm (monero-gui): Update to 0.17.3.0.
2021-12-08 13:31:37 +01:00
107481ea0f
gnu: monero: Update to 0.17.3.0.
...
* gnu/packages/finance.scm (monero): Update to 0.17.3.0.
* gnu/packages/patches/monero-use-system-miniupnpc.patch: Update patch.
2021-12-08 13:31:37 +01:00
c9b42242f9
gnu: python-userspacefs: Update to 2.0.4.
...
* gnu/packages/python-xyz.scm (python-userspacefs): Update to 2.0.4.
2021-12-08 12:34:13 +02:00
f45e304aa4
gnu: python-dropbox: Update to 11.25.0.
...
* gnu/packages/file-systems.scm (python-dropbox): Update to 11.25.0.
[propagated-inputs]: Remove python-certifi, python-chardet, and python-urllib3.
2021-12-08 11:51:03 +02:00
ddcec589bc
gnu: lollypop: Update to 1.4.24.
...
* gnu/packages/gnome.scm (lollypop): Update to 1.4.24.
[native-inputs]: Remove INTLTOOL and ITSTOOL. Add GETTEXT-MINIMAL.
2021-12-08 08:46:28 +01:00
2b8b89b7ab
gnu: python-toolz: Update to 0.11.2.
...
* gnu/packages/python-xyz.scm (python-toolz): Update to 0.11.2.
2021-12-08 08:46:28 +01:00
6f29d34bb2
gnu: python-django: Update to 3.2.10 [fixes CVE-2021-4442].
...
* gnu/packages/django.scm (python-django): Update to 3.2.10.
2021-12-08 08:46:28 +01:00
b5e69cf6c1
gnu: python-django@2.2: Update to 2.2.25 [fixes CVE-2021-4442].
...
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.25.
2021-12-08 08:46:28 +01:00
cb8d62bd42
gnu: hitch: Update to 1.7.2.
...
* gnu/packages/web.scm (hitch): Update to 1.7.2.
2021-12-08 08:46:28 +01:00
ee03b51f6e
gnu: lollypop: Build with libsoup@2.
...
* gnu/packages/gnome.scm (lollypop)[inputs]: Change from LIBSOUP to
LIBSOUP-MINIMAL-2.
2021-12-08 08:45:11 +01:00
637735da4d
gnu: rhythmbox: Adjust inputs.
...
* gnu/packages/gnome.scm (rhythmbox)[inputs]: Change from PYTHON2-PYGOBJECT to
PYTHON-PYGOBJECT. Add LIBSOUP-MINIMAL-2.
2021-12-08 08:45:11 +01:00
14bc2ce43a
gnu: labelme: Loosen Python requirements.
...
* gnu/packages/image-processing.scm (labelme)[arguments]: Patch setup.py so it
does not require a specific version of Matplotlib.
2021-12-08 08:45:11 +01:00
906dd9ff63
gnu: icecat: Update to 91.4.0-guix0-preview1 [security fixes].
...
Includes fixes for CVE-2021-43536, CVE-2021-43537, CVE-2021-43538,
CVE-2021-43539, CVE-2021-43541, CVE-2021-43542, CVE-2021-43543,
CVE-2021-43545, CVE-2021-43546, and MOZ-2021-0009.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Remove icecat-CVE-2021-43527.patch, which is now included
in upstream icecat. Update the gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-CVE-2021-43527.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-07 19:09:24 -05:00
9e67f2ad41
gnu: Add kiwix-tools.
...
* gnu/packages/web.scm (kiwix-tools): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-07 17:28:44 -05:00
5fb1ba880f
gnu: newick-utils: Pass -fcommon to compiler.
...
* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Set CFLAGS.
2021-12-07 23:27:40 +01:00
ed5e6c7502
gnu: blasr: Update to 5.3.5.
...
* gnu/packages/bioinformatics.scm (blasr): Update to 5.3.5.
2021-12-07 23:20:36 +01:00
38cf62a236
gnu: blasr: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (blasr)[arguments]: Remove trailing #T from
build phase.
2021-12-07 23:20:36 +01:00
d068de0c7d
gnu: blasr-libcpp: Update to 5.3.5.
...
* gnu/packages/bioinformatics.scm (blasr-libcpp): Update to 5.3.5.
[inputs]: Add htslib.
2021-12-07 23:20:36 +01:00
b81daed2de
gnu: htseq: Update to 0.12.3.
...
* gnu/packages/bioinformatics.scm (htseq): Update to 0.12.3.
2021-12-07 23:20:36 +01:00
6eecbfb9ac
gnu: clipper: Update to 2.0.1.
...
* gnu/packages/bioinformatics.scm (clipper): Update to 2.0.1.
[source]: Add snippet to remove pre-compiled files.
[arguments]: Disable tests, delete 'sanity-check phase, and add
'use-python3-for-cython phase.
2021-12-07 23:20:36 +01:00
fc797a3e8f
gnu: pbbam: Update to 1.7.0.
...
* gnu/packages/bioinformatics.scm (pbbam): Update to 1.7.0.
[arguments]: Remove phase 'find-googletest; add phase 'patch-tests.
[propagated-inputs]: Add pbcopper.
2021-12-07 23:20:30 +01:00
8775efe8f1
gnu: dovecot-pigeonhole: Update to 0.5.17.1.
...
* gnu/packages/mail.scm (dovecot-pigeonhole): Update to 0.5.17.1.
2021-12-07 18:42:48 +01:00
86d8a0460c
gnu: dovecot: Update to 2.3.17.1.
...
* gnu/packages/mail.scm (dovecot): Update to 2.3.17.1.
2021-12-07 18:42:48 +01:00
b764d10e91
gnu: bwa-pssm: Fix build.
...
* gnu/packages/bioinformatics.scm (bwa-pssm)[arguments]: Add phase
'patch-C-error.
2021-12-07 17:53:14 +01:00
4195a877cb
gnu: Add pbcopper.
...
* gnu/packages/bioinformatics.scm (pbcopper): New variable.
2021-12-07 16:00:22 +01:00
0a9c946df9
gnu: giac: Update to 1.7.0-43.
...
* gnu/packages/algebra.scm (giac): Update to 1.7.0-43.
2021-12-07 15:39:54 +01:00
8dcf062f28
gnu: python-ndg-httpsclient: Add missing input.
...
* gnu/packages/python-web.scm (python-ndg-httpsclient)[propagated-inputs]: Add
python-pyasn1.
2021-12-07 15:39:18 +01:00
a98fe1d46e
gnu: fsom: Build with GCC 6.
...
* gnu/packages/bioinformatics.scm (fsom)[native-inputs]: Add gcc-6.
[arguments]: Remove trailing #T.
2021-12-07 15:37:16 +01:00
cbef1824da
gnu: python-velocyto: Remove generated C files.
...
* gnu/packages/bioinformatics.scm (python-velocyto)[source]: Remove all
generated .c files.
2021-12-07 15:31:33 +01:00
6e67cda755
gnu: python-schema-salad: Update to 8.2.20211116214159.
...
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
8.2.20211116214159.
[arguments]: Remove trailing #T.
[propagated-inputs]: Replace python-cachecontrol-0.11 with
python-cachecontrol.
[native-inputs]: Add python-black.
2021-12-07 15:28:13 +01:00
16474f85cf
gnu: taxtastic: Update to 0.9.2.
...
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.9.2.
[arguments]: Delete 'sanity-check and 'python37-compatibility phases; adjust
'prepare-directory phase.
2021-12-07 15:13:06 +01:00
00ba04020e
gnu: taxtastic: Run tests conditionally.
...
* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Respect TESTS?
option.
2021-12-07 15:12:15 +01:00
58fecfd18e
gnu: python-dendropy: Update to 4.5.1.
...
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.5.1.
[arguments]: Skip failing tests.
2021-12-07 14:53:37 +01:00
68d15fcf20
gnu: make-gccgo: Override empty GOROOT/GCCGOTOOLDIR
...
gnu/packages/gcc.scm (make-gccgo)[arguments]: Set tool paths
(GOROOT and GCCGOTOOLDIR) even if they are already set to "".
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-07 15:25:54 +02:00
2da567d137
gnu: python-cooler: Use python-cytoolz-for-cooler.
...
* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace
python-cytoolz with python-cytoolz-for-cooler.
2021-12-07 13:24:58 +01:00
92a2f55cf9
gnu: Add python-cytoolz-for-cooler.
...
* gnu/packages/python-xyz.scm (python-cytoolz-for-cooler): New variable.
2021-12-07 13:24:49 +01:00
c08d6e63a0
gnu: python-sparse: Update to 0.13.0.
...
* gnu/packages/python-xyz.scm (python-sparse): Update to 0.13.0.
2021-12-07 13:16:47 +01:00
51bf893e53
gnu: Add diffr.
...
* gnu/packages/rust-apps.scm (diffr): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-07 14:15:28 +02:00
224d1c5818
gnu: python-dask: Update to 2021.11.2.
...
* gnu/packages/python-xyz.scm (python-dask): Update to 2021.11.2.
[source]: Fetch from github.
[arguments]: Remove phase 'disable-broken-tests.
2021-12-07 13:07:46 +01:00
ed15986a32
gnu: python-dask: Run tests conditionally.
...
* gnu/packages/python-xyz.scm (python-dask)[arguments]: Respect TESTS? option.
2021-12-07 13:07:23 +01:00
ad17046040
gnu: python-dask: Add missing input for tests.
...
* gnu/packages/python-xyz.scm (python-dask)[native-inputs]: Add
python-pytest-rerunfailures.
2021-12-07 13:06:37 +01:00
f36f58a564
gnu: Add rust-diffr-lib-0.1.
...
* gnu/packages/crates-io.scm (rust-diffr-lib-0.1): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-07 14:05:54 +02:00
899121f4d6
gnu: phylip: Update to 3.697.
...
* gnu/packages/bioinformatics.scm (phylip): Update to 3.697.
2021-12-07 13:05:53 +01:00
e86fe9801e
gnu: phylip: Pass -fcommon to compiler.
...
* gnu/packages/bioinformatics.scm (phylip)[arguments]: Set CFLAGS.
2021-12-07 13:05:35 +01:00
125fdc3ba4
gnu: phylip: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (phylip)[arguments]: Remove trailing #T from
build phases.
2021-12-07 13:05:15 +01:00
72dbf04b55
gnu: Add dutree.
...
* gnu/packages/rust-apps.scm (dutree): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-07 14:01:42 +02:00
4561ca7f4e
gnu: subread: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (subread)[arguments]: Remove trailing #T
from build phases.
2021-12-07 12:59:51 +01:00
96b2be833d
gnu: subread: Update to 2.0.3.
...
* gnu/packages/bioinformatics.scm (subread): Update to 2.0.3.
2021-12-07 12:59:36 +01:00
9a03587b62
gnu: subread: Update home page..
...
* gnu/packages/bioinformatics.scm (subread)[home-page]: Use new home page.
2021-12-07 12:55:08 +01:00
aa25c9b1a4
gnu: subread: Pass -fcommon to compiler.
...
* gnu/packages/bioinformatics.scm (subread)[arguments]: Add -fcommon to flags.
2021-12-07 12:54:48 +01:00
417299f004
gnu: python-pytest-console-scripts: Update to 1.2.1.
...
* gnu/packages/python-check.scm (python-pytest-console-scripts): Update to
1.2.1.
2021-12-07 12:41:14 +01:00
6874994fa9
gnu: Add python-pytest-rerunfailures.
...
* gnu/packages/python-check.scm (python-pytest-rerunfailures): New variable.
2021-12-07 12:35:00 +01:00
c25a6d39f3
gnu: mcl: Add -fcommon to compiler flags.
...
* gnu/packages/machine-learning.scm (mcl)[arguments]: Set CFLAGS.
2021-12-07 12:34:34 +01:00
b214034109
gnu: python-cytoolz: Update to 0.11.2.
...
* gnu/packages/python-xyz.scm (python-cytoolz): Update to 0.11.2.
[source]: Add snippet.
2021-12-07 12:34:22 +01:00
06fca01968
gnu: hisat: Update to 0.1.6.
...
* gnu/packages/bioinformatics.scm (hisat): Update to 0.1.6.
2021-12-07 11:51:10 +01:00
2f7287b3a7
gnu: hisat: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove trailing #T from
build phase.
2021-12-07 11:51:09 +01:00
9dc727f827
gnu: hisat: Remove invalid characters.
...
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove curly quotes.
2021-12-07 11:51:09 +01:00
478e3e714a
gnu: crossmap: Update to 0.6.1.
...
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.6.1.
[source]: Add snippet to remove generated files.
2021-12-07 11:51:09 +01:00
b5c9afb7c5
gnu: Remove python2-bx-python.
...
* gnu/packages/bioinformatics.scm (python2-bx-python): Delete variable.
2021-12-07 11:51:09 +01:00
699b443c86
gnu: python-bx-python: Update to 0.8.12.
...
* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.8.12.
[propagated-inputs]: Remove python-six.
[arguments]: Remove. Tests are still not run, though.
2021-12-07 11:51:09 +01:00
4b4ab4ce4d
gnu: Remove pbtranscript-tofu.
...
Upstream has disappeared and it depends on Python 2, which is no longer
supported.
* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove variable.
2021-12-07 11:51:09 +01:00
b452d7c2cf
gnu: python-pyfit-sne: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (python-pyfit-sne): Update to 1.2.1.
[arguments]: Disable tests explicitly.
2021-12-07 11:51:09 +01:00
05deb26be9
gnu: guile-netlink: Update to 1.1.1.
...
* gnu/packages/guile.scm (guile-netlink): Update to 1.1.1.
2021-12-07 00:09:35 +01:00
e21b422f7f
gnu: emacs-csv-mode: Update to 1.17.
...
* gnu/packages/emacs-xyz.scm (emacs-csv-mode): Update to 1.17.
2021-12-06 22:01:31 +01:00
4afacd4546
gnu: helm: Fix build with GCC 9 and later.
...
* gnu/packages/music.scm (helm)[origin]: Add patch.
* gnu/packages/patches/helm-fix-gcc-9-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-12-06 20:41:18 +00:00
757a2eb970
tests: patchwork: Use the default PostgreSQL.
...
* gnu/tests/web.scm (patchwork-os)[services]: Change from POSTGRESQL-10 to
POSTGRESQL.
2021-12-06 21:17:31 +01:00
8662057130
gnu: patchwork: Adjust for python-build-system change.
...
This is a follow-up to commit db5646d957
2021-12-06 21:15:42 +01:00
ca2f851da1
gnu: f-seq: Update name of commons-cli JAR.
...
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Use new name of
commons-cli JAR.
2021-12-06 18:48:01 +01:00
f0763fba5c
gnu: f-seq: Remove trailing #T.
...
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Remove trailing #T from
build phase.
2021-12-06 18:48:01 +01:00
1310879fb0
gnu: f-seq: Simplify snippet.
...
* gnu/packages/bioinformatics.scm (f-seq)[source]: Simplify snippet.
2021-12-06 18:48:01 +01:00
404f695385
gnu: Go 1.17: Update to 1.17.4.
...
* gnu/packages/golang.scm (go-1.17): Update to 1.17.4.
2021-12-06 12:40:38 -05:00
e4d8f2fe31
gnu: Go 1.16: Update to 1.16.11.
...
* gnu/packages/golang.scm (go-1.16): Update to 1.16.11.
2021-12-06 12:40:38 -05:00
4e282bc934
gnu: Syncthing: Update to 1.18.4.
...
* gnu/packages/syncthing.scm (syncthing): Update to 1.18.4.
[arguments]: Build with Go 1.17.
2021-12-06 12:10:12 -05:00
3b6a7693fa
gnu: osinfo-db-next: Fix uri.
...
* gnu/packages/virtualization.scm (osinfo-db-next)[source]: Fix URI.
2021-12-06 17:28:22 +01:00
30c776a6a8
gnu: go-gopkg-in-yaml-v2: Update to 2.4.0.
...
* gnu/packages/golang.scm (go-gopkg-in-yaml-v2): Update to 2.4.0.
2021-12-06 14:45:50 +02:00
c569430b6c
gnu: go-gopkg-in-yaml-v2: Fix test suite on 32-bit systems.
...
* gnu/packages/golamg.scm (go-gopkg-in-yaml-v2)[source]: Add snippet to
no longer cause integer overflow on 32-bit systems during test suite.
2021-12-06 14:43:17 +02:00
b6a726222a
gnu: go-github-com-golang-snappy: Adjust test-suite on 32-bit systems.
...
* gnu/packages/syncthing.scm (go-github-com-golang-snappy)[source]: Add
patch to skip a test on 32-bit systems.
* gnu/packages/patches/go-github-com-golang-snappy-32bit-test.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-12-06 14:04:30 +02:00
f4d4c40500
gnu: python-kivy: Add missing dependencies.
...
* gnu/packages/python-xyz.scm (python-kivy)[arguments]: Add 'set-home'
phase.
[inputs]: Add PYTHON-DOCUTILS, PYTHON-KIVY-GARDEN, and PYTHON-PYGMENTS.
[synopsis, description]: Tweak.
2021-12-06 11:49:06 +01:00
7e40d0ee90
gnu: Add python-kivy-garden.
...
* gnu/packages/python-xyz.scm (python-kivy-garden): New variable.
2021-12-06 11:48:47 +01:00
9478a25250
gnu: openssh: Remove libfido2 dependency on GNU/Hurd.
...
* gnu/packages/ssh.scm (openssh)[inputs]: Remove LIBFIDO2 when
'hurd-target?'.
[arguments]: Likewise for "--with-security-key-builtin".
2021-12-06 10:56:01 +01:00
93e9f0bc7f
ci: Cross-build the 'guix' package.
...
* gnu/ci.scm (%core-packages): Add GUIX.
2021-12-06 10:56:01 +01:00
326e532177
gnu: Add git-absorb.
...
* gnu/packages/rust-apps.scm (git-absorb): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-06 10:47:09 +01:00
96416e4256
gnu: poke: Remove generated files.
...
* gnu/packages/engineering.scm (poke)[source]: Add snippet to remove
generated files.
2021-12-06 11:39:08 +02:00
c70df3c467
gnu: poke: Update to 1.4.
...
* gnu/packages/engineering.scm (poke): Update to 1.4.
[native-inputs]: Remove clisp, perl, python-2, and python-3.
2021-12-06 11:39:07 +02:00
Efraim Flashner
Ricardo Wurmus
Foo Chuan Wei
gyara
Artyom V. Poptsov
Vinicius Monego
Giacomo Leidi
Julien Lepiller
Jonathan Brielmaier
Andrew Tropin
jgart via Guix-patches via
Demis Balbach
Petr Hodina
Nikolay Korotkiy
Nicolas Goaziou
Jacob MacDonald
Liliana Marie Prikler
Mathieu Othacehe
Tobias Geerinckx-Rice
Vivien Kraus
Andy Tai
Philip McGrath
Arun Isaac
Marius Bakke
terramorpha
Leo Famulari
Ludovic Courtès
Sarah Morgensen
Zhu Zihao
Guillaume Le Vaillant
Mark H Weaver
Denis 'GNUtoo' Carikli
jgart
Pierre Langlois