c6c0c985d3
gnu: emacs-mu4e-patch: Rename to emacs-message-view-patch
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The name was changed upstream to reflect that this extension works for both
mu4e and gnus.
* gnu/packages/emacs-xyz.scm (emacs-mu4e-patch): Deprecate it.
(emacs-message-view-patch): Renamed from emacs-mu4e-patch. Description,
synopsis, and inputs adjusted to reflect that mu4e is not required.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:03 +02:00
6995d68435
gnu: xfce4-diskperf-plugin: Update to 2.7.0.
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* gnu/packages/xfce.scm (xfce4-diskperf-plugin): Update to 2.7.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:03 +02:00
3b2ea81894
gnu: elementary-xfce-icon-theme: Update to 0.16.
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* gnu/packages/xfce.scm (elementary-xfce-icon-theme): Update to 0.16.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
0495819926
gnu: xfce4-terminal: Update to 1.0.0.
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* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.0.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
4ed02d571a
gnu: Add python-verspec.
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* gnu/packages/python.xyz.scm (python-verspec): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
304c6b395c
gnu: Add python-shtab.
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* gnu/packages/python-xyz.scm (python-shtab): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
6e174c4edd
gnu: shepherd: Support cross-compilation.
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Reported by phodina <phodina@protonmail.com>.
* gnu/packages/admin.scm (shepherd-0.9)[arguments]: New field.
[native-inputs]: Add GUILE-FIBERS-1.1.
2022-04-15 19:13:02 +02:00
35a1de1a4c
gnu: mblaze: Offer contrib executables.
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* gnu/packages/mail.scm (mblaze)[outputs, inputs]: New fields.
[arguments]: Add #:modules. Add 'install-contrib' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
ff3355dcbf
gnu: streamlink: Update to 3.2.0.
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* gnu/packages/video.scm (streamlink): Update to 3.2.0.
[inputs]: Add python-lxml and python-pycountry, remove python-iso3166 and python-iso639.
[arguments]<#:phases>{check}: Use pytest.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:01 +02:00
ee617c4800
gnu: python-lxml: Add 4.7.1.
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* gnu/packages/xml.scm (python-lxml-4.7): New variable.
2022-04-15 19:13:01 +02:00
179a949e60
gnu: cl-nfiles: Update to 0.4.0.
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* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 0.4.0.
[inputs]: Add sbcl-quri.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-15 17:09:03 +02:00
53a8e8fd6c
gnu: python-hmmlearn: Remove cythonized file.
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* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add
snippet to remove cythonized file.
2022-04-15 02:11:03 +03:00
ac5f070631
gnu: python-aiohttp: Remove cythonized files.
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* gnu/packages/python-web.scm (python-aiohttp)[source]: Add snippet to
remove cythonized files.
2022-04-14 23:30:27 +03:00
802c94034c
gnu: python-pywavelets: Remove cythonized files.
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* gnu/packages/python-xyz.scm (python-pywavelets)[source]: Add snippet
to remove cythonized files.
[native-inputs]: Add python-cython.
2022-04-14 23:23:18 +03:00
6083372f61
gnu: python-igraph: Update to 0.9.10.
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* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
2022-04-14 22:57:49 +03:00
d6a5bdf000
gnu: igraph: Update to 0.9.8.
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* gnu/packages/graph.scm (igraph): Update to 0.9.8.
2022-04-14 22:57:06 +03:00
7034746e15
gnu: scregseg: Remove cythonized file.
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* gnu/packages/bioinformatics.scm (scregseg)[source]: Add snippet to
remove cythonized file.
2022-04-14 22:55:33 +03:00
5059e7f01e
gnu: cl-py4cl: Update to 0.0.0-1.2f2a008.
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* gnu/packages/lisp-xyz.scm (sbcl-py4cl): Update to 0.0.0-1.2f2a008.
[arguments]<#:phases>: Adjust substitutions to renamed files.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 20:31:59 +02:00
8f5b2f0693
gnu: Add emacs-org-modern.
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* gnu/packages/emacs-xyz.scm (emacs-org-modern): New variable.
Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-04-14 11:34:03 -04:00
0ddca9d682
gnu: Add cl-numpy-file-format.
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* gnu/packages/lisp-xyz.scm (cl-numpy-file-format, ecl-numpy-file-format,
sbcl-numpy-file-format): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
0f6aaf2f62
gnu: cl-who: Update to 1.1.4-3.07dafe9.
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* gnu/packages/lisp-xyz.scm (sbcl-cl-who): Update to 1.1.4-3.07dafe9.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
6bf6529792
gnu: linux-libre 5.10: Update to 5.10.111.
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* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.111.
(linux-libre-5.10-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
0b20c8e071
gnu: linux-libre 5.15: Update to 5.15.34.
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* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.34.
(linux-libre-5.15-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
1b7f05f72c
gnu: linux-libre: Update to 5.16.20.
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* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.20.
(linux-libre-5.16-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
0a3fee824b
gnu: linux-libre 5.17: Update to 5.17.3.
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* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.3.
(linux-libre-5.17-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
aaf4b08c6b
gnu: Update linux-libre 5.17 configuration files.
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This option that adds new hardware support appeared after the 5.17 release.
* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: Enable support for Realtek
Ethernet switch chips.
2022-04-14 10:22:54 -04:00
b0dd06bd0c
gnu: Add r-xcir.
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* gnu/packages/bioconductor.scm (r-xcir): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 14:53:17 +02:00
16372cb347
gnu: sundials: Remove input labels.
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* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
2022-04-14 14:48:21 +02:00
61bcd648ca
gnu: sundials: Update to 6.1.1.
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* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags. Change "MPI_ENABLE" to "ENABLE_MPI".
2022-04-14 14:48:21 +02:00
5f74169e8e
daemon: Support systemd-style socket activation.
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* nix/nix-daemon/guix-daemon.cc (SD_LISTEN_FDS_START): New macro.
(systemd_activation_sockets): New function.
(main): Use it. Remove obsolete 'printMsg' call.
* doc/guix.texi (Invoking guix-daemon): Document socket activation.
2022-04-14 14:48:20 +02:00
b9233cb9a8
publish: Support systemd-style socket activation.
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* guix/scripts/publish.scm (systemd-socket): New procedure.
(guix-publish): Add 'style' variable. Adjust startup message depending
on whether STYLE is 'systemd.
* doc/guix.texi (Invoking guix publish): Mention socket activation.
2022-04-14 14:48:20 +02:00
17c6d00b57
publish: Use SRFI-71 instead of SRFI-11.
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* guix/scripts/publish.scm (make-request-handler): Use 'let' instead of
'let-values'.
2022-04-14 14:48:20 +02:00
1f82602153
gnu: guile-fibers@1.1: Support cross-compilation.
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Fixes <https://issues.guix.gnu.org/54793 >.
Reported by Mathieu Othacehe <othacehe@gnu.org>.
* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add
'support-cross-compilation' phase.
2022-04-14 14:48:20 +02:00
c9cded0955
style: Correctly read dots in pairs and improper lists.
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Until now dots were read as symbols.
* guix/scripts/style.scm (read-with-comments)[dot]: New variable.
[dot?, reverse/dot]: New procedures.
Use 'reverse/dot' instead of 'reverse' when reading lists.
* tests/style.scm ("read-with-comments: dot notation")
("((a . 1) (b . 2))", "(a b c . boom)"): New tests.
2022-04-14 14:48:20 +02:00
919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section.
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* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
2022-04-14 13:38:30 +02:00
03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
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* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
2022-04-14 13:37:23 +02:00
c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).
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* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
2022-04-14 13:35:22 +02:00
aafd0d2309
gnu: r-absseq: Move out of experiments section.
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* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
2022-04-14 13:34:11 +02:00
ed3697c040
gnu: r-abarray: Move out of experiments section.
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* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
2022-04-14 13:32:52 +02:00
67941709e2
gnu: r-aneufinder: Move to packages section.
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* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
2022-04-14 13:31:33 +02:00
cab6657094
gnu: Add r-absseq.
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* gnu/packages/bioconductor.scm (r-absseq): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:29:48 +02:00
a436582124
gnu: Add r-abarray.
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* gnu/packages/bioconductor.scm (r-abarray): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:20:07 +02:00
1b2b1c30e2
gnu: Add r-acde.
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* gnu/packages/bioconductor.scm (r-acde): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:18:07 +02:00
dd9d26bce6
gnu: Add r-wppi.
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* gnu/packages/bioconductor.scm (r-wppi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:47:24 +02:00
55be5fc400
gnu: Add r-acme.
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* gnu/packages/bioconductor.scm (r-acme): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:33:27 +02:00
08df30f232
gnu: Add r-acgh.
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* gnu/packages/bioconductor.scm (r-acgh): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:59:15 +02:00
50046194a2
gnu: libfprint: Fix build, add python for the tests.
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* gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal
as it's needed by the tests.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:54:11 +02:00
839241501a
gnu: Add r-ace.
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* gnu/packages/bioconductor.scm (r-ace): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:50:34 +02:00
7d990e775e
gnu: r-catalyst: Update description.
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* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:43:24 +02:00
d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4.
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* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
2022-04-14 11:29:40 +02:00
Dominic Martinez
Michael Rohleder
Zhu Zihao
Vincent Prat
Ludovic Courtès
B. Wilson
Chadwain Holness
André A. Gomes
Efraim Flashner
Paul A. Patience
jgart
Foo Chuan Wei
Leo Famulari
Mădălin Ionel Patrașcu
Ludovic Courtès
Ricardo Wurmus
Attila Lendvai