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Author SHA1 Message Date
Nicolas Goaziou bbc8a12524
gnu: emacs-org-web-tools: Improve package style. 
* gnu/packages/emacs-xyz.scm (emacs-org-web-tools)[arguments]: Use
G-expressions.  Remove trailing #T from phases.
[description]: Use proper quoting and name for Org project.

Change-Id: Ifdec8ab61fc44f2a73da87a1fd042140e691e5ae
 2023-11-08 15:20:54 +01:00
Nicolas Goaziou 9fef2524b1
gnu: emacs-org-web-tools: Update to 1.2. 
* gnu/packages/emacs-xyz.scm (emacs-org-web-tools): Update to 1.2.
[propagated-inputs]: Add EMACS-COMPAT.

Change-Id: Ie2efc8472dc2e6d6fd380b280fac571af9b5dc3a
 2023-11-08 15:20:54 +01:00
Nicolas Goaziou 1721c1fe51
gnu: emacs-org-ql: Update to 0.7.3. 
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.7.3.

Change-Id: I4bedacdab4947ff6e0e751cb8c2cffecc31052e3
 2023-11-08 15:20:54 +01:00
Nicolas Goaziou 95a60aa413
gnu: emacs-org: Update to 9.6.11. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.6.11.

Change-Id: I159bbb49607631ca9a25fc4dc1bf1bd43a8dc932
 2023-11-08 15:20:54 +01:00
Nicolas Goaziou b7b2cafa24
gnu: emacs-olivetti: Update to 2.0.5. 
* gnu/packages/emacs-xyz.scm (emacs-olivetti): Update to 2.0.5.

Change-Id: I016382b6be6f268a1f6f34097e976d00bbf5eec0
 2023-11-08 15:20:53 +01:00
Nicolas Goaziou a43c6fbd16
gnu: emacs-jarchive: Update to 0.11.0. 
* gnu/packages/emacs-xyz.scm (emacs-jarchive): Update to 0.11.0.

Change-Id: Ia0b5b5b48cda6127631163980f81979ce77dd980
 2023-11-08 15:20:53 +01:00
Nicolas Goaziou ffa08b3e5e
gnu: emacs-git-modes: Update to 1.4.2. 
* gnu/packages/emacs-xyz.scm (emacs-git-modes): Update to 1.4.2.

Change-Id: I3d79b4b5a514e133b64c688cf77aee423fed2245
 2023-11-08 15:20:53 +01:00
Nicolas Goaziou 504b85237e
gnu: emacs-fountain-mode: Update to 3.7.1. 
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.7.1.

Change-Id: I2a7a1c65e517eb261cf272f2e895d5242801ff5e
 2023-11-08 15:20:52 +01:00
Nicolas Goaziou 37f3ade8a9
gnu: emacs-expand-region: Update to 1.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-expand-region): Update to 1.0.0.

Change-Id: I04ebab9d22dc7b43590839fa467d05a6f7670c45
 2023-11-08 15:20:52 +01:00
Nicolas Goaziou 38b345006b
gnu: emacs-elfeed-protocol: Update to 0.9.1. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-protocol): Update to 0.9.1.

Change-Id: Iaac2a6bd8669cb37aee85087ab56b40391fff072
 2023-11-08 15:20:52 +01:00
Nicolas Goaziou d5d43ec3e2
gnu: emacs-eldev: Update to 1.7. 
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.7.
[arguments]<#:phases>: Re-instate one previously failing test.

Change-Id: Ie0cef80184f0d117d50eef20512b4aaf22d31ff4
 2023-11-08 15:20:52 +01:00
Nicolas Goaziou 2e5b62d964
gnu: emacs-ef-themes: Update to 1.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-ef-themes): Update to 1.4.0.

Change-Id: I29cae75d5866091c242302581ae5fbf430ccc17d
 2023-11-08 15:20:51 +01:00
Nicolas Goaziou 1e50e65568
gnu: emacs-ebuild-mode: Update to 1.69. 
* gnu/packages/emacs-xyz.scm (emacs-ebuild-mode): Update to 1.69.

Change-Id: I5d06c0e8a660da18bb152e8745e3f6901fe8de5a
 2023-11-08 15:20:51 +01:00
Nicolas Goaziou f6fbe8ec4f
gnu: emacs-ebib: Update to 2.39.4. 
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.39.4.

Change-Id: I8486a18bf65ecc7c5050b1c6136026072eda3f47
 2023-11-08 15:20:51 +01:00
Nicolas Goaziou 30586802de
gnu: emacs-citar: Update to 1.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 1.4.0.

Change-Id: I98e0a753c496e0d67ad864ebc8fd0833926d3347
 2023-11-08 15:20:51 +01:00
Nicolas Goaziou 3bd8e8d001
gnu: emacs-base16-theme: Update to 3.2. 
* gnu/packages/emacs-xyz.scm (emacs-base16-theme): Update to 3.2.

Change-Id: I72824ccb9c17584a2f05ef430ef74219aaa530c7
 2023-11-08 15:20:50 +01:00
Nicolas Goaziou f6b542fbab
gnu: emacs-ivy-hydra: Update to 0.14.2. 
* gnu/packages/emacs-xyz.scm (emacs-ivy-hydra): Update to 0.14.2.

Change-Id: I1ce77975a479b885f5a931efd3c8b0db52c39ce5
 2023-11-08 15:20:50 +01:00
Nicolas Goaziou d2ae12d0a1
gnu: emacs-ivy-avy: Update to 0.14.2. 
* gnu/packages/emacs-xyz.scm (emacs-ivy-avy): Update to 0.14.2.

Change-Id: If3818e32fa9db5d796400a56ffc0465ff4665c43
 2023-11-08 15:20:50 +01:00
Nicolas Goaziou 15c591dc7f
gnu: emacs-buffer-env: Update to 0.5. 
* gnu/packages/emacs-xyz.scm (emacs-buffer-env): Update to 0.5.

Change-Id: I907e5c6e0ce618aefdb2b16d9fef16e60b797ede
 2023-11-08 15:20:49 +01:00
Nicolas Goaziou fa8d1a909c
gnu: emacs-url-http-ntlm: Update to 2.0.5. 
* gnu/packages/emacs-xyz.scm (emacs-url-http-ntlm): Update to 2.0.5.

Change-Id: I16c695c072c5c473224c7014fc192de278708f37
 2023-11-08 15:20:49 +01:00
Nicolas Goaziou 55de82d1b3
gnu: emacs-tramp: Update to 2.6.1.4. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.6.1.4.

Change-Id: I59cd68fedca7241c6d9330a03fb3b2e997299bce
 2023-11-08 15:20:49 +01:00
Nicolas Goaziou 77b8f58ec0
gnu: emacs-notmuch-indicator: Update to 1.1.0. 
* gnu/packages/emacs-xyz.scm (emacs-notmuch-indicator): Update to 1.1.0.

Change-Id: I1b748d4d63adca3080a9169e0d898a7c6ff0a321
 2023-11-08 15:20:49 +01:00
Nicolas Goaziou dddd1d3557
gnu: emacs-zones: Update to 2023.6.11. 
* gnu/packages/emacs-xyz.scm (emacs-zones): Update to 2023.6.11.

Change-Id: I80ac39d4ac38128d466da9984f89f5b3144eff18
 2023-11-08 15:20:48 +01:00
Nicolas Goaziou 20fa882f6f
gnu: emacs-swiper: Update to 0.14.2. 
* gnu/packages/emacs-xyz.scm (emacs-swiper): Update to 0.14.2.

Change-Id: I58f3c05c455a5f4e5c770f84eec1bf63b1025f85
 2023-11-08 15:20:48 +01:00
Nicolas Goaziou 2d6acc29e8
gnu: emacs-counsel: Update to 0.14.2. 
* gnu/packages/emacs-xyz.scm (emacs-counsel): Update to 0.14.2.

Change-Id: I351610c4c91ac634ec8e4dda808937b050bc912e
 2023-11-08 15:20:48 +01:00
Nicolas Goaziou 2d6ebcbcc4
gnu: emacs-ivy: Update to 0.14.2. 
* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.14.2.

Change-Id: I5299af740db0a9ebc80218fe350b9113b67cfa22
 2023-11-08 15:20:47 +01:00
Nicolas Goaziou 024c099672
gnu: emacs-company: Update to 0.10.2. 
* gnu/packages/emacs-xyz.scm (emacs-company): Update to 0.10.2.

Change-Id: Ia92884da4664d051eeb23c7f245aac8ab5020cfe
 2023-11-08 15:20:47 +01:00
Nicolas Goaziou c1f7e3e7b5
gnu: emacs-debbugs: Update to 0.37. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.37.

Change-Id: I6df1eafb8801197670bb7efb7c2e1839ae741181
 2023-11-08 15:20:47 +01:00
Nicolas Goaziou 14adc3b53f
gnu: emacs-compat: Update to 29.1.4.3. 
* gnu/packages/emacs-xyz.scm (emacs-compat): Update to 29.1.4.3.

Change-Id: Ie6c78b0adde92be3633b6c914a7ce65a9bc6d7fc
 2023-11-08 15:20:47 +01:00
Nicolas Goaziou c620ac44d0
gnu: emacs-subed: Update to 1.2.6. 
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.6.

Change-Id: Ied1c05299bdf1523221c13d2770bcbfbfdb47ac3
 2023-11-08 15:20:46 +01:00
Nicolas Goaziou b310ca2bae
gnu: emacs-auctex: Update to 13.2.2. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.2.

Change-Id: I1cc2d385b14f1a5c2bac90642c4c8a7e0be6a5c3
 2023-11-08 15:20:46 +01:00
Nicolas Goaziou 02f9a4150a
gnu: emacs-bbdb: Update to 3.2.2.4. 
* gnu/packages/emacs-xyz.scm (emacs-bbdb): Update to 3.2.2.4.

Change-Id: I1b3c043bab7a6834cc515a93ae053fef69d8dbf4
 2023-11-08 15:20:46 +01:00
Nicolas Goaziou 26c148bd92
gnu: emacs-relint: Update to 1.24. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.24.

Change-Id: Ie7375ac6b87db9221234a073b18d797a5bb239c0
 2023-11-08 15:20:45 +01:00
Nicolas Goaziou 9443cd9959
gnu: emacs-xr: Update to 1.25. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.25.

Change-Id: I7470de1e0ea69afd345b1dbe7cec35275314cc88
 2023-11-08 15:20:45 +01:00
Nicolas Goaziou 08a926a6b0
gnu: emacs-org-caldav: Update to 3.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-caldav): Update to 3.0.

Change-Id: Idb8d9a8e1f9613c2c86552373f5c708df5dc1da0
 2023-11-08 15:20:45 +01:00
Jonathan Scoresby f879d5a03b
gnu: Have vim packages use vim-build-system. 
* gnu/packages/vim.scm (vim-neocomplete, vim-neocomplete-snippets,
vim-neosnippet, vim-scheme, vim-luna, vim-fugitive, vim-airline,
vim-airline-themes, vim-syntastic, neovim-syntastic, vim-solarized,
vim-rainbow, editorconfig-vim, neovim-packer, vim-guix-vim,
vim-asyncrun, vim-dispatch, vim-gemini-vim, vim-eunuch, vim-slime,
vim-vlime, vim-paredit, vim-surround, vim-gnupg, vim-ctrlp,
vim-mucomplete, vim-gitgutter, vim-characterize, vim-tagbar,
vim-nerdtree, vim-nerdcommander):
[build-system]: Switch to vim-build-system.
[arguments]: Adjust accordingly.
* gnu/packages/code.scm (global)[arguments]: Move vim files to their new
location.
* gnu/packages/lisp.scm (txr),
* gnu/packages/mail.scm (msmtp),
* gnu/packages/rust-apps.scm (skim),
* gnu/packages/vim.scm (vifm),
* gnu/packages/wm.scm (fluxbox): Same.

Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: I8b3e5d65d76a100c3dbddc1ae562b72966c2b304
 2023-11-08 12:09:28 +02:00
Jonathan Scoresby b17567d45c
gnu: vim: Add vim packages to 'package-path' instead of 'runtime-path'. 
This is neccesary because vim's built-in plugin manager looks for directories
    under 'package-path' instead of 'runtime-path.' Once we have told vim the
    package-path, it adds all the packages to the runtime-path automatically for us.

* gnu/packages/aux-files/guix.vim: Add paths to packagepath instead of
runtimepath.  Remove code to adjust runtimepath after adding paths.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-11-08 10:28:55 +02:00
Efraim Flashner e8739da12e
gnu: git-lfs: Support building on more systems. 
* gnu/packages/version-control.scm (git-lfs)[arguments]: Only run
man-page related phases when ruby-asciidoctor is available.
[native-inputs]: Only include ronn-ng, ruby-asciidoctor when building on
a platform which has support for ruby-asciidoctor.

Change-Id: Icbf8416998dc5d1f9d7c8299b4f929380dc29165
 2023-11-08 09:27:24 +02:00
Maxim Cournoyer 5da6e8961c
gnu: libreoffice: Update to 7.6.3.1. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 7.6.3.1.
[native-inputs]: Add frozen.
 2023-11-07 22:35:32 -05:00
Maxim Cournoyer f296ceaafc
gnu: Add frozen. 
* gnu/packages/cpp.scm (frozen): New variable.

Change-Id: I738dfcfa55ddb824c2186fb61484a8a3c9532b35
 2023-11-07 22:35:31 -05:00
Maxim Cournoyer 36c03db7ce
gnu: libcmis: Update to 0.6.0. 
* gnu/packages/libreoffice.scm (libcmis): Update to 0.6.0.

Change-Id: I2aeb6ecd67fcb281e61fbd48b4aa63d2763007a3
 2023-11-07 22:29:21 -05:00
Maxim Cournoyer e4443561d2
gnu: orcus: Update to 0.19.0. 
* gnu/packages/libreoffice.scm (orcus): Update to 0.19.0.
[source]: Use git-fetch/lfs.
[arguments]: Use gexps.
[native-inputs]: Add autoconf, automake and libtool.

Change-Id: I76efbc57ca4acf8ffd5154a72e49b4aedd071a76
 2023-11-07 12:33:26 -05:00
Maxim Cournoyer 370468c547
gnu: ixion: Update to 0.19.0. 
* gnu/packages/libreoffice.scm (ixion): Update to 0.19.0.
[source]: Use git.
[native-inputs]: Add autoconf, automake and libtool.

Change-Id: I245457d7c99b6adfb895dc46276f8008ff13d0cd
 2023-11-07 12:33:26 -05:00
Maxim Cournoyer e18af936ff
gnu: mdds: Update to 2.1.1. 
* gnu/packages/boost.scm (mdds): Update to 2.1.1.
[source]: Fetch from git.
[native-inputs]: New field.

Change-Id: I4e71d5c360f4b7305cffd7008e2bbbfcaad2f897
 2023-11-07 12:33:26 -05:00
Sergey Trofimov fd20e0d5f4
gnu: emacs-telega-server: Update to 0.8.203. 
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to 0.8.203.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-07 21:06:11 +04:00
Sergey Trofimov d01a138093
gnu: tdlib: Update to 1.8.20. 
* gnu/packages/messaging.scm (tdlib): Update to 1.8.20.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-07 21:06:10 +04:00
Janneke Nieuwenhuizen c7408f50d1
gnu: mes: Use m2-planet-1.9.0. 
* gnu/packages/mes.scm (mes)[native-inputs]: Revert to m2-planet-1.9.0.

Change-Id: Iac504f5b46bac4c989af914415b14955a072278e
 2023-11-07 16:42:32 +01:00
Janneke Nieuwenhuizen 009621092b
gnu: Add m2-planet-1.9.0 
* gnu/packages/mes.scm (m2-planet-1.9.0): New variable.
 2023-11-07 16:36:46 +01:00
Clément Lassieur 3f83dc5587
gnu: ublock-origin: Update to 1.53.0. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.53.0.
(ublock-main-assets): Update to d573d4db0bccb3f99fa8845c2b1dcb79103007d3.
(ublock-prod-assets): Update to c7cfd8fb7e4ea07051f55f370d504c78e6a8e023.

Change-Id: I1c9ac9e130bb8146904229f951de9b42d5c84479
 2023-11-06 14:46:30 +01:00
Efraim Flashner d52ee267ee
gnu: streamlink: Update to 6.3.1. 
* gnu/packages/video.scm (streamlink): Update to 6.3.1.
[source]: Add snippet to accept older versions of python-trio.
[native-inputs]: Remove python-mock.  Add python-pytest-asyncio,
python-pytest-trio.
[propagated-inputs]: Add python-trio, python-trio-websocket,
python-typing-websockets.

Change-Id: Ib3e8930ed73974ddad4deb7015049b96c925b656
 2023-11-06 09:55:00 +02:00
Efraim Flashner be46ab7a91
gnu: mpv-mpris: Update to 1.1. 
* gnu/packages/video.scm (mpv-mpris): Update to 1.1.
[inputs]: Add ffmpeg.

Change-Id: I47f99a71681807c034b44518e7d4e5ed857ac77e
 2023-11-06 09:19:31 +02:00
Wilko Meyer 7e214b9a1a
gnu: linux-libre 6.5: Update to 6.5.10. 
* gnu/packages/linux.scm (linux-libre-6.5-version): Update to 6.5.10.
(linux-libre-6.5-pristine-source): Update hash.

Change-Id: Icc0c07d8f38659be00e3675c335801aab5ae8b6c
Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-07-23 22:26:05 -04:00
Wilko Meyer 61ba1a6133
gnu: linux-libre 6.1: Update to 6.1.61. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.61.
(linux-libre-6.1-pristine-source): Update hash.
(deblob-scripts-6.1): Update hash.

Change-Id: Iaab673a11ff578ac7671999deb7d31f4dfd5b1e2
Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-07-23 22:26:05 -04:00
Ludovic Courtès 08d94fe20e
home: services: Add 'x11-display' service. 
* gnu/home/services/desktop.scm (x11-shepherd-service): New procedure.
(home-x11-service-type): New variable.
(redshift-shepherd-service): Add 'requirement' field.
(home-redshift-service-type): Extend 'home-x11-service-type'.
* doc/guix.texi (Desktop Home Services): Document it.

Change-Id: Ibd46d71cbb80fcdff8dbf3e8dbcfc3b24163bdb6
 2023-11-05 23:23:23 +01:00
Ludovic Courtès 31b39f2a33
tests: inetd: Avoid race condition when looking for PID file. 
* gnu/tests/networking.scm (run-inetd-test): Use ‘wait-for-file’ instead
of ‘file-exists?’.

Change-Id: I3e596814485428fb81595d81c4e03519340c6576
 2023-11-05 23:23:23 +01:00
Ludovic Courtès 0c695bbf8d
tests: Honor system and target when lowering <system-test>. 
* gnu/tests.scm (compile-system-test): Wrap ‘system-test-value’ call in
‘mparameterize’.

Change-Id: I4be28913a86f43059b0886ad2fcf81a9c699b730
 2023-11-05 23:23:23 +01:00
Hilton Chain 286639c9af
gnu: phantomsocks: Update to 0.0.0-20231031033204-8b0ac27fc450. 
* gnu/packages/networking.scm (phantomsocks): Update to
0.0.0-20231031033204-8b0ac27fc450.
[arguments]<#:go>: Use go-1.20.

Change-Id: I8cee734d5582c99b7940591ba14fba927992a201
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:14:26 +00:00
Hilton Chain c5267d334a
gnu: emacs-wanderlust: Update to 2.15.9-803.3e8cf26. 
* gnu/packages/emacs-xyz.scm (emacs-wanderlust): Update to 2.15.9-803.3e8cf26.
[version]: Inline version.

Change-Id: I4b9a08016e525df80745d266f4932956475ef24b
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:13:51 +00:00
Hilton Chain 56c0c79511
gnu: emacs-semi-epg: Update to 1.14.6-247.d15603b. 
* gnu/packages/emacs-xyz.scm (emacs-semi-epg): Update to 1.14.6-247.d15603b.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:13:51 +00:00
Sharlatan Hellseher 7995a474ea
gnu: python-asdf: Update to 3.0.0. 
* gnu/packages/astronomy.scm (python-asdf-3.0): New variable, migrated
from python-asdf.
[arguments]: Move it from here ...
[native-inputs]: Remove python-astronomy, python-pytest-openfiles.
[propagated-inputs]: Add python-attrs. Remove
python-importlib-resources, python-jsonschema.

(python-asdf-2.15): New variable. Inherited from python-asdf-3.0.
[arguments]: ... to here.

(python-asdf): Set it to use python-asdf-2.15 as 3.0.0 includes some
breaking changes which may not testes in dependent projects.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 9f06cf2ed8
gnu: python-pytest-astropy: Update to 0.11.0. 
* gnu/packages/python-check (python-pytest-astropy): Update to 0.11.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher c13950ad27
gnu: python-pytest-doctestplus: Update to 1.0.0. 
* gnu/packages/python-check (python-pytest-doctestplus): Update to 1.0.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher a72d7beb3f
gnu: python-pytest-remotedata: Update to 0.4.1. 
* gnu/packages/python-check (python-pytest-remotedata): Update to 0.4.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 2f33ac988c
gnu: python-jwst: Update to 1.12.5. 
* gnu/packages/astronomy.scm (python-jwst): Update to 1.12.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 53a4452e98
gnu: python-ephem: Update to 4.1.5. 
* gnu/packages/astronomy.scm (python-ephem): Update to 4.1.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 7e7a3bd6e0
gnu: python-crds: Update to 11.17.7. 
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 944005417d
gnu: python-cdflib: Update to 1.2.3. 
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 0420667cbe
gnu: python-astropy: Update to 5.3.4. 
* gnu/packages/astronomy.scm (python-astropy): Update to 5.3.4.
[arguments]{phases}: Disable one failing test, reported upstream.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:36 +00:00
Sharlatan Hellseher 20e7aa2732
gnu: libxisf: Update to 0.2.10. 
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.10.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 966ffbf8c6
gnu: python-pyerfa: Update to 2.0.1.1. 
* gnu/packages/astronomy.scm (python-pyerfa): Update to 2.0.1.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 95a1688229
gnu: erfa: Update to 2.0.1. 
* gnu/packages/astronomy.scm (erfa): Update to 2.0.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher d9b6426cbb
gnu: python-astroalign: Update to 2.5.0. 
* gnu/packages/astronomy.scm (python-astroalign): Update to 2.5.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 10917afe67
gnu: python-cdflib: Update to 1.2.2. 
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.2.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 4d4e9b84ee
gnu: python-pynbody: Update to 1.4.1. 
* gnu/packages/astronomy.scm (python-pynbody): Update to 1.4.1.
[source]: Switch to git-fetch.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher 0d7e51d8ee
gnu: python-spherical-geometry: Enable tests. 
* gnu/packages/astronomy.scm (python-spherical-geometry): Enable tests.
[build-system]: Switch to pyproject-build-system.
[arguments]{phases}: Add 'build-extensions phase.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher a8c1c98690
gnu: python-spherical-geometry: Simplify package. 
* gnu/packages/astronomy.scm (python-spherical-geometry):
[arguments]{phases}<preparations>: Switch to
SETUPTOOLS_SCM_PRETEND_VERSION evnar instead modifying setup.py.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher e7b315216a
gnu: imppg: Use standard configure phase. 
* gnu/packages/astronomy.scm (imppg): Use G-expressions.
[arguments]{phases}: Use 'configure standard phase instead of
replacement.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Sharlatan Hellseher b4be620009
gnu: glnemo2: Fix home-page. 
* gnu/packages/astronomy.scm (glnemo2): Fix home-page to point to actual
project's one.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:09:35 +00:00
Bruno Victal 913d52952b
gnu: font-google-noto: Update to 23.11.1. 
[1] indicates that [2] is the new _distribution_ upstream for Noto fonts.

[1]: <https://github.com/notofonts/noto-fonts>
[2]: <https://github.com/notofonts/notofonts.github.io>

* gnu/packages/fonts.scm (font-google-noto): Update to 23.11.1.
[source]<method>: Switch to git-fetch.

Change-Id: I242710336ec81489f9800b68416f45c57d28b2bd
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 18:08:20 +00:00
Artyom Bologov 04cb25ab9e
gnu: sbcl-cl-webkit: Update to 3.5.10. 
gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.5.10.

Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: Ibd54d701a28267fe4fbb979112155839de9d89e5
 2023-11-05 18:03:13 +00:00
Jaeme Sifat bf6fdf76b0
gnu: Remove dunst.scm. 
The dunst package is much beter suited to be in wm.scm. This patch deletes
dunst.scm, moves dunst to wm.scm, and removes dunst.scm from the build
process.

* gnu/local.mk (GNU_SYSTEM_MODULES): Remove dunst.scm.
* gnu/packages/dunst.scm: Delete file.
* gnu/packages/wm.scm (dunst): New variable.

Change-Id: I3b074f12f34e14ef1101069ed45ddb33f8d3ea51
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 17:57:56 +00:00
Jaeme Sifat a482d3d9ba
gnu: dunst: Update to 1.9.2. 
* gnu/packages/dunst.scm (dunst): Update to 1.9.2.
[arguments]: Use gexps.

Change-Id: Ic13f1679074462918991a1ceba8571a46e721224
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-05 17:57:49 +00:00
Jelle Licht ab94e80601
gnu: node-lts: Update to 18.18.2. 
* gnu/packages/node.scm (node-lts): Update to 18.18.2.
[arguments]<phases>: Add 'install-node-gyp-wrapper phase.

Change-Id: I6b17de33313505558a8fa9560126adef486fd0e3
 2023-11-05 12:37:18 +01:00
VÖRÖSKŐI András 175532b749
gnu: Add rust-blake2-0.10. 
* gnu/packages/crates-io.scm (rust-blake2-0.10): New variable.

Change-Id: I8cb30f21a62c563c9c7c559765d9672aed6680ad
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-11-05 12:22:39 +02:00
Janneke Nieuwenhuizen 7684214b3d
gnu: m2-planet: Update to 1.11.0. 
* gnu/packages/mes.scm (m2-planet): Update to 1.11.0.

Change-Id: I65ebb434a090e0a57dac50764f16523946a6fa3f
 2023-11-05 11:00:16 +01:00
Janneke Nieuwenhuizen 09feb16a0c
gnu: mescc-tools: Update to 1.5.0. 
* gnu/packages/mes.scm (mescc-tools): Update to 1.5.0.

Change-Id: I53f6923b8378b5205356e068aa1f1481a9bf7b42
 2023-11-05 10:59:40 +01:00
Efraim Flashner 4826856977
gnu: icedtea-7: Fix building on powerpc-linux. 
* gnu/packages/java.scm (icedtea-7)[arguments]: Adjust custom
'install-libjvm phase to add support for powerpc-linux.

Change-Id: Ie77a2b53fdef1e0ddc0351e6c2d0241d08b80508
 2023-11-05 08:42:48 +02:00
Mădălin Ionel Patrașcu adf716c171
gnu: Add r-screpertoire. 
* gnu/packages/bioconductor.scm (r-screpertoire): New variable.

Change-Id: Iaa876f787d5e39ca2888bf2082da3d7839224e15
 2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu 01b7d917a2
gnu: Add r-powertcr. 
* gnu/packages/bioconductor.scm (r-powertcr): New variable.

Change-Id: I75fc30a7021d6199b768318da3afcfeaaafcf027
 2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu 1678be98f2
gnu: Add r-evmix. 
* gnu/packages/cran.scm (r-evmix): New variable.

Change-Id: I93152dee218e9cef85dd66e17231f1728f0ffb52
 2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu ab64815f6a
gnu: Add r-truncdist. 
* gnu/packages/cran.scm (r-truncdist): New variable.

Change-Id: Icb9f06a36e5ee5a58828dc2f496b71a850a911b9
 2023-11-04 23:13:51 +01:00
Mădălin Ionel Patrașcu 3f991b817d
gnu: Add r-evd. 
* gnu/packages/cran.scm (r-evd): New variable.

Change-Id: I1f3b2ee5829807f6f76cf87b4df43ae8005688bc
 2023-11-04 23:13:51 +01:00
Wilko Meyer e3f318f048
gnu: linux-libre 5.10: Fix the hash of the deblob-scripts. 
This is a followup to commit e672066097.

* gnu/packages/linux.scm (deblob-scripts 5.10): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I0fe56dd2694185b6c77468ecc844aaf25ec7564a
 2023-07-23 22:26:01 -04:00
Wilko Meyer 3bb6938ffc
gnu: linux-libre 5.15: Fix the hash of the deblob-scripts. 
This is a followup to commit b26526ea05.

* gnu/packages/linux.scm (deblob-scripts 5.15): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: Ia59003f2ccfe98e2390593d1ca0b7077f0b7bd5d
 2023-07-23 22:26:00 -04:00
Wilko Meyer 1d4813f275
gnu: linux-libre 6.1: Fix the hash of the deblob-scripts. 
This is a followup to commit 26709726a8.

* gnu/packages/linux.scm (deblob-scripts 6.1): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I0035078f4c229763e56cf70ccae730804b123640
 2023-07-23 22:26:00 -04:00
Mădălin Ionel Patrașcu 58786c82df
gnu: Add r-rnbeads. 
* gnu/packages/bioconductor.scm (r-rnbeads): New variable.

Change-Id: I78b248a449473fc37ac414295faa6e61269b8625
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-04 17:09:53 +01:00
Mădălin Ionel Patrașcu 4c17016019
gnu: Add r-ewastools. 
* gnu/packages/bioinformatics.scm (r-ewastools): New variable.

Change-Id: I4117dbee188c7d9547fe63b2b89ec9258bbda60b
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-04 17:03:24 +01:00
Mădălin Ionel Patrașcu a04800b811
gnu: Add r-mblm. 
* gnu/packages/cran.scm (r-mblm): New variable.

Change-Id: Iddfa9bc03a4e5782623253cb70d1ae888545e2ec
 2023-11-04 17:03:24 +01:00
Mădălin Ionel Patrașcu e16d152463
gnu: Add r-dnamcrosshyb. 
* gnu/packages/bioinformatics.scm (r-dnamcrosshyb): New variable.

Change-Id: I19e332e6adf0ce9cc721d89bb74a1aa709778873
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-04 16:30:11 +01:00
Mădălin Ionel Patrașcu cb0e60cccf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked. 
* gnu/packages/bioconductor.scm
  (r-bsgenome-hsapiens-ucsc-hg38-masked): New variable.

Change-Id: Ic1b646a3bd3b7262dd82f0972961c2e89628e90b
 2023-11-04 16:30:11 +01:00
Jack Hill 9dcd8802f5
gnu: python-pikepdf: Fix embedded version string. 
* gnu/packages/python-xyz.scm (python-pikepdf)[native-inputs]: Add
python-setuptools-scm to correct embedded version form 0.0.0 to 1.17.0.

Change-Id: I659ed3e725fff6afe17abe6f55449567ba84cdfc
 2023-11-04 19:05:28 +08:00
Nicolas Graves 33644303a1
gnu: emacs-org-ql-dynamic-agenda: Rename to emacs-org-dynamic-agenda-ql. 
* /gnu/packages/emacs-xyz.scm (emacs-org-ql-dynamic-agenda): Rename to…
(emacs-org-dynamic-agenda-ql): …this.
[arguments]<#:include>: Adjust according to source change.

Change-Id: I4b09933a17d301e3017f1628414eade1ee174538
 2023-11-04 19:03:39 +08:00
Mădălin Ionel Patrașcu 7eeab6417f
gnu: Add r-methylaid. 
* gnu/packages/bioconductor.scm (r-methylaid): New variable.

Change-Id: I7839035e5316bdbe5f1386b7b41ed2fc440fb432
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-04 11:37:15 +01:00
Clément Lassieur f54f36b363
gnu: passff-host: Add explicit references to inputs and remove some. 
This removes ‘coreutils’, ‘grep’, ‘sed’, ‘which’, ‘bash-minimal’ and
‘gnu-make’ inputs, which were only used by the Makefile and
install_host_app.sh.  Instead of running install_host_app.sh (through
‘make’) which does a few text substitutions, do the text substitutions with
Scheme code.  This simplifies things and avoids unnecessary native inputs.

* gnu/packages/browser-extensions.scm (passff-host)[build-system]: Change to
copy-build-system.
[arguments]: Copy passff.json and passff.py.  Do text substitutions on
them rather than running make.  Refer to ‘password-store’ and ‘python’ through
inputs rather than directly.
[inputs]: Add PASSWORD-STORE and PYTHON.

Change-Id: I8fdb757516a7c30eae36b15f2a8d91e1445b19a5
 2023-11-04 00:52:39 +01:00
Clément Lassieur 625cfb4c4c
gnu: password-store: Add missing ‘tail’ input. 
* gnu/packages/password-utils.scm (password-store)[arguments]: Add “tail” to
the list of requisites.
[inputs]: Add COREUTILS.

Change-Id: I7f59e6c0abfb5396b9548edaec08d3b0a7c0eb23
 2023-11-04 00:52:38 +01:00
Afkhami, Navid 10d728139d
gnu: Add r-ggbreak. 
* gnu/packages/cran.scm (r-ggbreak): New variable.

Change-Id: I27d62d0110fb56e77dc8cf82581adb6259317c2d
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-03 23:39:57 +01:00
Vinicius Monego 479fdc8451
gnu: python-pymc: Update to 5.9.1. 
* gnu/packages/statistics.scm (python-pymc): Update to 5.9.1.

Change-Id: I3d7927e7173f36ba4edeab06bd930c285432c29f
 2023-11-03 19:25:36 -03:00
Vinicius Monego 43d9fa0802
gnu: python-pytensor: Update to 2.17.3. 
* gnu/packages/python-science.scm (python-pytensor): Update to 2.17.3.

Change-Id: I2843aca1df4d43883bf643e6e363bd3700202c45
 2023-11-03 19:25:36 -03:00
Vinicius Monego 1879bfd88f
gnu: python-deepxde: Update to 1.10.0. 
* gnu/packages/machine-learning.scm (python-deepxde): Update to 1.10.0.

Change-Id: Ibc37f9e7df45c49f590beb1dda87236e853b88c1
 2023-11-03 19:25:36 -03:00
Vinicius Monego 96e8502faa
gnu: Add python-emcee. 
* gnu/packages/statistics.scm (python-emcee): New variable.
 2023-11-03 19:25:35 -03:00
Vinicius Monego a7d56852e3
gnu: Add python-salib. 
* gnu/packages/python-science.scm (python-salib): New variable.
 2023-11-03 19:25:35 -03:00
Vinicius Monego 9642b1c7af
gnu: python-openturns: Update to 1.21.1. 
* gnu/packages/statistics.scm (python-openturns): Update to 1.21.1.
 2023-11-03 19:25:35 -03:00
Vinicius Monego a55c3110be
gnu: python-opentsne: Update to 1.0.0. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 1.0.0.
 2023-11-03 19:25:35 -03:00
Vinicius Monego ef473d3422
gnu: symengine: Update to 0.11.1. 
* gnu/packages/algebra.scm (symengine): Update to 0.11.1.
 2023-11-03 19:25:31 -03:00
Ricardo Wurmus eb93ab2d14
gnu: r-gdata: Remove Excel from description. 
gdata 3.0.0 has removed support for reading Excel files.

* gnu/packages/statistics.scm (r-gdata)[description]: Update it.

Change-Id: Ic4090bc765d330d38136bf1b1dbbb6bb136edd39
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 8be2f44765
gnu: Remove r-sigpathway. 
This package has been removed with the release of Bioconductor 3.18.

* gnu/packages/bioconductor.scm (r-sigpathway): Remove variable.

Change-Id: I5cb9d938f370aa28b196f9cea95fb6024c2e6e37
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 38b5777ec8
gnu: r-rhdf5filters: Simplify. 
* gnu/packages/bioconductor.scm (r-rhdf5filters)[arguments]: Remove
'use-system-libraries phase and pass configure flags to disable bundled
libraries.

Change-Id: I2fb115e7b3df00cccb3f8d6659d465075d21f19b
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 78641cf9da
gnu: r-spams: Build with C++11. 
* gnu/packages/statistics.scm (r-spams)[arguments]: Add phase 'use-c++11.

Change-Id: Ie477af6afe8993919090f6c81e071cee542e69bc
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 142313cf0c
gnu: Remove r-genomegraphs. 
This package had been removed from Bioconductor with release 3.11.

* gnu/packages/bioconductor.scm (r-genomegraphs): Remove variable.

Change-Id: I73cc8cc8546089d91212176939b8c0c0a7afc309
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 0150529188
gnu: Remove r-wavetiling. 
This package had been removed from Bioconductor since release 3.12.

* gnu/packages/bioconductor.scm (r-wavetiling): Remove variable.

Change-Id: I5eb624d975f0eb170b263266b144eacf11944580
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus abaca151b2
gnu: r-mpo-db: Include HPO sqlite database. 
* gnu/packages/bioconductor.scm (r-mpo-db)[arguments]: Bypass fetching of the
database from the internet when in build environment.
[native-inputs]: Add MPO.sqlite.

Change-Id: Ic7228322b89ce78a85a9bd5ffbd985ccd906d268
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus b30127052e
gnu: r-readwriter: Update to 0.3.2-1.12d32cb. 
* gnu/packages/bioinformatics.scm (r-readwriter): Update to 0.3.2-1.12d32cb.

Change-Id: I412190ce94bee4e7b5fce27db7ef8a72188e74f4
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus c66c66ee3f
gnu: r-hpo-db: Include HPO sqlite database. 
* gnu/packages/bioconductor.scm (r-hpo-db)[arguments]: Bypass fetching of the
database from the internet when in build environment.
[native-inputs]: Add HPO.sqlite.

Change-Id: Ie01605ef2531d992fb85c07bae5cfaabda626ea6
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus a938342899
gnu: r-rhdf5lib: Adjust modifications to Makevars. 
* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Adjust patch.

Change-Id: Iaef3d2d80c22de1c2a0b64e7c13f5fa3b8e5719d
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus c82c9c8090
gnu: r-phyloseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.46.0.

Change-Id: Id11b5e913529ac8efce0d046168f4a9dbe0dbabd
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 1c3e8ab395
gnu: r-tximeta: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.0.

Change-Id: I8d9c5d01efc8f6c64290cdfdd193d95cd1da9152
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 270d7e1079
gnu: r-tricycle: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.10.0.

Change-Id: I72a9e1140c17ce8605bfe6e83cc290eb1ae2fad2
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 9ee38f4ee6
gnu: r-tcgabiolinks: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.30.0.

Change-Id: If7e571bfa6454bfa94dd395606575391dc506ecd
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 28480926a5
gnu: r-biscuiteer: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.16.0.

Change-Id: Ib6cffbbeedfe87932acfcbfb2b789b4c92a9bf81
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 53ebbff56c
gnu: r-omnipathr: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.10.1.
[propagated-inputs]: Add r-lubridate and r-stringi.

Change-Id: Ia18b66848cd6996dfdc551bf4b182bb5ac3e17a8
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 41a4f01473
gnu: r-omicade4: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.42.0.

Change-Id: I4369e5721116bf73f096ee39a516ada94c348872
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 73efb254d8
gnu: r-dmrseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.22.0.

Change-Id: I738c2fb7e0fa3e816d3767f854b8f9ed77425591
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus f6e56299e7
gnu: r-dada2: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.30.0.

Change-Id: I0955c3a61b4d81cd6809e2eb287d8acfcccfb789
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 407e9b2710
gnu: r-bsseq: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.38.0.

Change-Id: Ie31f0b5c726da98a0caa4c658a5c62c1a5f40eaa
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 69d7d7a6db
gnu: r-biotmle: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.26.0.

Change-Id: Ied1d1e649fba277aa724040af31334f664d2debd
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus 9f2c8b711b
gnu: r-biotip: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.16.0.

Change-Id: I73503554b0271e5fe950c6da367b4893972f27e9
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus a7d1b8832a
gnu: r-bioqc: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.30.0.

Change-Id: I0b5fd7cac1283a7f12a1221ad453eb56767e8b90
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus ee259a9ad9
gnu: r-bionetstat: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.22.0.

Change-Id: I92f2ebef0b65b947a719bdd1008f07ce279263a4
 2023-11-03 22:49:28 +01:00
Ricardo Wurmus b0190a7d5c
gnu: r-bionet: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.62.0.

Change-Id: I0712a4ba67c27b32d6666e91d9515f0299e61848
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 63f3a845ea
gnu: r-bionero: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.0.

Change-Id: I396a37dd28571a471b45d4d8aca6ce40a1cbd384
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 4ccceb31b9
gnu: r-biomvcclass: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.70.0.

Change-Id: I0c6214669ec284d314eb7dc90270558934070e4b
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus b4e803a8a9
gnu: r-mvcclass: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.76.0.

Change-Id: I6e7fa851c804009ae41a955b117d95b33fd1b2f0
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus c91a1a8bc8
gnu: r-biomformat: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.30.0.

Change-Id: I661d11f81a0dedbc8381b5ba1806643b5ff52aa6
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 2b4dcd4a7b
gnu: r-biodb: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.10.0.

Change-Id: If1d14855b2bf134741c54c0a51daefdf2b80a49f
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 9480ea5046
gnu: r-biocthis: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.12.0.

Change-Id: I8400ebfd178f916488e022152e75db59f05994e6
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 327c9bd7c8
gnu: r-basilisk: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.0.

Change-Id: I86f5306de138eb1fedffbae65c14f9acd504c86c
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus b5527cc3c6
gnu: r-basilisk-utils: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.0.

Change-Id: I6113042a10770ee50e4ef997ee41fe109f917885
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus b2389dcfc1
gnu: r-dir-expiry: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.10.0.

Change-Id: I1081ec981a52a51a351d98e5079f8fd4bcc399d0
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus d5026a9e16
gnu: r-genetclassifier: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.42.0.

Change-Id: I323ca2d408c640b05c9d845570ee7af28616cce2
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 31fef7c331
gnu: r-minet: Update to 3.60.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.60.0.

Change-Id: I4944d2e34aacc6d3ba8c5a2d2176ecf7b33ca6b8
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus ae127ddf0d
gnu: r-biobtreer: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.14.0.

Change-Id: Icf0458c6931237a405178361778a68c1a068337c
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus d40b4c5063
gnu: r-bgeedb: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.28.0.

Change-Id: I558f36065a9a751710843f21c6089231309705ca
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 38f88c84bf
gnu: r-bgeecall: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.18.1.

Change-Id: I5db747786c63f248dec01879e41a9837c94d6d6c
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 58661d1d54
gnu: r-beclear: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.18.0.

Change-Id: Ia52d2072c95c4ff68cabe22cd6f9da8f3f7833b3
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 6ddf9ed610
gnu: r-megadepth: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.12.0.

Change-Id: Ia8424334f3183442a8e7ffb21ba664b93f6342a3
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 9d0492c750
gnu: r-ballgown: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.34.0.

Change-Id: Ice69c2be8df89cb103e73de328ac6eb5919f0502
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 7e36e3ed55
gnu: r-guitar: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.18.0.

Change-Id: I2cd39de6e1fedbc3ed9a137373d6836e930296f2
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 0c881be497
gnu: r-chromstar: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.28.0.

Change-Id: I48a305a00b1fe7c89ca4f9700ebe6f65a6265080
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus d775b141cf
gnu: r-snpstats: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.52.0.

Change-Id: Ia770e5b05a7998d552b8ccb5386ddc1ad6722217
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 3b0e948493
gnu: r-snprelate: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.36.0.

Change-Id: I79ab3d448ab4b10a97d9c9d36b3b849a7c491508
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus bbe5704c17
gnu: r-snapcgh: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.72.0.

Change-Id: I7b2adbcb45461b5dc4f8248f92bfbda5f145d906
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 6b8c604e48
gnu: r-pathview: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.42.0.

Change-Id: I56a1425210667cc9b1ee41d20b9a71a749f6ff91
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 740e7ff51b
gnu: r-parody: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-parody): Update to 1.60.0.

Change-Id: I409588b32e582c0c6cd631d56a92ca430e2429d4
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus e9618ab210
gnu: r-ldblock: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.32.0.

Change-Id: I4183a3b48e050120ffb1e5cbba3894a5637ad1cc
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 9f139605ef
gnu: r-kegggraph: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.62.0.

Change-Id: Iadaa3580a5755ca5e611d980241191c4ae8b9452
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus b6288f949f
gnu: r-gwastools: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: I0544357b6f954e4812d1cdb983e12ed34f83b0d1
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 11300bd9ee
gnu: r-gwascat: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.34.0.

Change-Id: I3ae4066f1e36e30cecdf15cb9a5bfb469f0d6b49
 2023-11-03 22:49:27 +01:00
Ricardo Wurmus 3e5e4bf311
gnu: r-gviz: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.0.

Change-Id: Ib7b7f039dffd4f25731a4be3edfa6ecd293ceeff
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus f52a6fe0f1
gnu: r-ggbio: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.50.0.

Change-Id: I242df48dce620f327205d7f47bebfba0eae7d0c8
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 7af02a2c1d
gnu: r-erma: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-erma): Update to 1.18.0.

Change-Id: I4f5993a1b80fc10b2eceb3177402c5b577a72855
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus bfd81d4846
gnu: r-catalyst: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.26.0.
[propagated-inputs]: Remove r-magrittr.

Change-Id: I2026d88617251a7dd5b87e57d7891852a0ff84cf
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus fd9c0e4167
gnu: r-msmstests: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.40.0.

Change-Id: Ia7f0d3e6684411cda2ab93c173b3195fa8a55348
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus bf8406c30a
gnu: r-msmseda: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.40.0.

Change-Id: Idc5314c04de4e03047d5fa9faac907a2ab8d527d
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus f2ab2bba68
gnu: r-biocio: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.12.0.

Change-Id: Ie6e5aee0c1a0c122f574d801e3268b460f89be2f
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 456beea62b
gnu: r-msfeatures: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.10.0.

Change-Id: I47be1fd6789a9cc386bc394e5fe0724156119ec9
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 0708efd724
gnu: r-mscoreutils: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.0.

Change-Id: Idbefebedc36bb19f5fe3549c9c3fc1e4056bf4fd
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 8fbc9cecda
gnu: r-delayedmatrixstats: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.24.0.
[propagated-inputs]: Remove r-matrixstats.

Change-Id: I212a19d1938a676f88c0371dc838bdfbea0ba814
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 372d1079d4
gnu: r-spatialexperiment: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.12.0.
[propagated-inputs]: Remove r-dropletutils.

Change-Id: I0df7aba48690c8472dee732b2aa21c9a83cb1e68
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus fb51c8df4f
gnu: r-sparsematrixstats: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.14.0.

Change-Id: Ia8812ca08d97737c1542afc80ce31ae29e673820
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus d797b2bb6f
gnu: r-scran: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.0.

Change-Id: Ic22fe78b4cd043f42b6e6cf8cf1d18772f7cfe63
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 051831dedc
gnu: r-scater: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.30.0.
[propagated-inputs]: Remove r-delayedmatrixstats and r-densvis; add r-matrixgenerics.

Change-Id: I7efb9c918fbc52bd0f3e184b928118cf59901d30
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 9cd2ed0580
gnu: r-scuttle: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.12.0.

Change-Id: Ia827e7c0cc34e84a82d844909f186eb8acecb604
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 71c77b8a95
gnu: r-singler: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-singler): Update to 2.4.0.

Change-Id: I1d3dd6343c3b604431684774075815d0454dbe6f
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 1e98a630ec
gnu: r-singlecellexperiment: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.24.0.

Change-Id: I22ffd8659aab63f3abd3ace3e874c8f83df2eeff
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus f936bf66fc
gnu: r-chromvar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.24.0.

Change-Id: I90826fc26d2ca866e3502b275b92b77ea091745e
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus c5068f9911
gnu: r-motifmatchr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.24.0.

Change-Id: Ic656b84be047307728609f7a80b4077b1c638d4c
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 2458396f31
gnu: r-maftools: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.18.0.

Change-Id: I86ad6178d842ab3c93281bc4795a76abeb3c1e35
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus eff0371eed
gnu: r-tfbstools: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.40.0.

Change-Id: I5a3422fbd518ba681184e1ac36e3c1d95de07059
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 3e271e4d71
gnu: r-cner: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.38.0.

Change-Id: I8907fcc16b67330e76c5d3bd050d594f07924e8a
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus d8aa22981d
gnu: r-beaddatapackr: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.54.0.

Change-Id: I231314cbe3d77920611221f8d234fffe123e7a26
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 74479eb3af
gnu: r-beadarraysnp: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.68.0.

Change-Id: I699cd1b68d682e2994b360e226c147674efe440d
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 87a27ee369
gnu: r-beadarray: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-beadarray): Update to 2.52.0.

Change-Id: Id9bf32ed5c1ce7ab77eda56e2c05dacc6ce987dd
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 0223873ff9
gnu: r-beachmat: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.18.0.
[propagated-inputs]: Add r-sparsearray.

Change-Id: I7ef74dcb5778d994f9a25616daa8c43ce97f2a40
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus d7ceedddff
gnu: r-rhdf5lib: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.0.

Change-Id: Iedc6746f91520826543dd3576591fb5d557bee8b
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus a9a7f0e6d5
gnu: r-hdf5array: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.30.0.

Change-Id: Id4e3654018ace7d0fae1d242a592a5bdb0064354
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus 9940cd5a87
gnu: r-hitc: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.46.0.

Change-Id: I0afa4f9da8a94712fe851268ea94af25db058a8c
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus ac96b72ebf
gnu: r-fithic: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.28.0.

Change-Id: I0a17ee5963458b4aa80d35eab741693f68881793
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus d2819bd479
gnu: r-fishpond: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.8.0.

Change-Id: If7bdb7c7c7fc1cb1b0350b0b95813bcb48e2665b
 2023-11-03 22:49:26 +01:00
Ricardo Wurmus c4aeeb8e37
gnu: r-rgraphviz: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.46.0.

Change-Id: Ic983783baa291a4842fbed292c090a0f31226518
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 7d25e2b5c3
gnu: r-s4vectors: Update to 0.40.1. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.40.1.

Change-Id: I927dc9c82cd0b8c3db90c4e7c5b6eefeddbb68dc
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 43972af221
gnu: r-s4arrays: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.2.0.

Change-Id: Ib9b6491f8047d9c8a446f1232e08a1dec7ca740b
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus dbc5c312ae
gnu: r-preprocesscore: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.64.0.

Change-Id: Ifb7fdf7c4d74129500a74d5155b64b065e564136
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 2810ee4b0d
gnu: r-icens: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.74.0.

Change-Id: If871b12a0d1076b2cc2f16ea64a87f1086da137e
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus b26b8e521b
gnu: r-m3c: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.24.0.

Change-Id: Ibabb639726245ecffc51ac39fb0fa9636e9bc404
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 75e6f86cc0
gnu: r-pcatools: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.14.0.

Change-Id: I35eac63ee233c103627cea0d80842c8b7db1c576
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 251e2665cf
gnu: r-biodist: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.74.0.

Change-Id: Ia446e4991c1955b439b2a9b40d7a22c014c5732c
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 78a082720a
gnu: r-biocworkflowtools: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.28.0.

Change-Id: I23ba98e1feb48187df231b8174217b4e7a6fc5cd
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus c4f3bc06f5
gnu: r-biocset: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.16.0.

Change-Id: I8c37bdf0eaad27d5c3010aedb400541d3b925183
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 5890114ab6
gnu: r-biocpkgtools: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.20.0.

Change-Id: I4a19909e48efb3602bbdf346e860cd5fc1de5ced
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus b972c4f697
gnu: r-biocor: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.26.0.

Change-Id: I735115d213344ec92d6e7b37bbabc2f372a3e6ba
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 10cc2092a0
gnu: r-bioconcotk: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.22.0.

Change-Id: I241228a90ff960d98534248e5f49a69acf1fb39b
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 18b06daa50
gnu: r-multiassayexperiment: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.28.0.

Change-Id: I4b8c41053ac624832377a285f5002724e409b4da
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 15961e132d
gnu: r-grohmm: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.36.0.

Change-Id: I692b58aace86c5f69ba1645ebb95113f0a846409
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 2b79447123
gnu: r-experimenthub: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.10.0.

Change-Id: I1a47361ad688a9f3219a8d9e6ff2531728129177
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 7943457076
gnu: r-biocviews: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.70.0.

Change-Id: Ic8cf3a0f1e8767812e951dbfb5d12960726712f6
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus f9dcaf2f11
gnu: r-biocstyle: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.30.0.

Change-Id: I4bcb716982fa5eaea2e9aa34624bf4145011d20b
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus cb0e6b7711
gnu: r-biocgraph: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.64.0.

Change-Id: Ic9aa7212fa29c9ee691219d915de532b63fc6a37
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus ee1f2a995f
gnu: r-bioccheck: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.0.
[propagated-inputs]: Add r-biocbaseutils and r-callr.

Change-Id: I98e6b4ad7e3c32597435a3656adcd1cf10d3b019
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus e477608856
gnu: r-biocbaseutils: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.4.0.

Change-Id: Id934591d48281066c90c36fdb9c0ef715188f8fd
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 92a1f44f6d
gnu: r-ebarrays: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.66.0.

Change-Id: Ib13ff4d7edabeba4c3250337f0d23629b9426328
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 72ad29f730
gnu: r-reactomepa: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.46.0.

Change-Id: I543add10e14ad634795e29f6db2e07a518878108
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 26e71b7a72
gnu: r-graphite: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.48.0.

Change-Id: Ifcaed9653072ac86fbda18ac7dcf3686dd66116e
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 026bc372d8
gnu: r-biobroom: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.34.0.

Change-Id: Iba62b38441f0127acb0880105dc4fb174238412b
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus c0beba2647
gnu: r-bioassayr: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.40.0.

Change-Id: Idfd958f0ea6e3e73c83a2f67b59c2f600c4de109
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus be0482d40f
gnu: r-fmcsr: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.44.0.

Change-Id: Ie4da389382e4d3836342be872a88dcbeb69f59ed
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus dadf10ed8b
gnu: r-chemminer: Update to 3.54.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.54.0.

Change-Id: I43836d9323e3034c02a9864deddaf4a854a8e909
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 8d14b99d75
gnu: r-chemmineob: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-chemmineob): Update to 1.40.0.

Change-Id: Ic7ab360eafea01ea0f7f586b588120c468d8ffd6
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus df794c84f9
gnu: r-biggr: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.38.0.

Change-Id: I2dd8a24f1f73782ab888af0f89654e0ef7302b3e
 2023-11-03 22:49:25 +01:00
Ricardo Wurmus 0f8cccb01f
gnu: r-hyperdraw: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.54.0.

Change-Id: I0d49e7993e9225d409e863ddba3f6f832b3f95aa
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 59e55fc39e
gnu: r-hypergraph: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.74.0.

Change-Id: I7053e0b906422526bc57220fc63fde8700a40524
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 0fc5a510b5
gnu: r-hybridmtest: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.46.0.

Change-Id: If225eb7af55746651921d924a10ee95ee9b071b8
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 772c6fb840
gnu: r-rsbml: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.60.0.

Change-Id: Ie1f3bc87e1c4c5df2fece70aa0a72133e038f347
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 99ff99c9eb
gnu: r-bifet: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.22.0.

Change-Id: I8207d5945dcbba850610e1ce6b77f834c927fa2c
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus a70ca6a613
gnu: r-bicare: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.60.0.

Change-Id: I231f0c6f24b62a9bf999b39af003156cd1578289
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 6f38f25816
gnu: r-bhc: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.54.0.

Change-Id: I52b46125e0cb912b4e27d4198a676d311a5c5eb9
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus bab03df210
gnu: r-bgx: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.0.

Change-Id: Idcab4760b9e96d74f96c0f9a09c945d9d960e598
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 2fa21de9c2
gnu: r-acde: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-acde): Update to 1.32.0.

Change-Id: I2f7fd79361be6326b307fbb7d3ef4c7bf6a585ed
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 84de1e4ade
gnu: r-acme: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-acme): Update to 2.58.0.

Change-Id: Ife3005c7a63743eed0f86c5037a06d9e38a14097
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 85060391ba
gnu: r-acgh: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.80.0.

Change-Id: Ic9fb3c4309c733b49f6af9e37ed80a519bdf9357
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 865e3e75a8
gnu: r-ace: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ace): Update to 1.20.0.

Change-Id: Ifc01abdde81766045c6f4e47df49f45785f59f94
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 45cbc2372e
gnu: r-universalmotif: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.20.0.

Change-Id: I72bb6459df1e04875888fa9f77b726ec54055ca3
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 642f470df1
gnu: r-unifiedwmwqpcr: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.38.0.

Change-Id: Iee0e28569f7be1940b6a3dbf167dc916c16833df
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 428f4cb50b
gnu: r-ucell: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.1.

Change-Id: I2bf8868b8d1f7fa1bdedfc6f999e586a869b9e1e
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 3ff2e070fe
gnu: r-htqpcr: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.56.0.

Change-Id: Ib8428af779a98690de7304225da31b7697d1fa45
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 3df0e523f2
gnu: r-variancepartition: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.1.
[propagated-inputs]: Remove r-doparallel, r-foreach, and r-progress; add r-corpcor and
r-fancova.

Change-Id: Iccea2f1b1929d23b821142aebe121bc09ff62b44
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 75cac71be2
gnu: r-variantfiltering: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.38.0.

Change-Id: I598d983c5d7e0f45da04c14f2fc6453e6ef88d98
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 3c93fab37f
gnu: r-tilingarray: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.80.0.

Change-Id: I78c5d57af6117ce78232ebfa065416fd7d2a6cc4
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus 43ea1c324a
gnu: r-wavcluster: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.36.0.

Change-Id: I24818db21be07d1f5476dc5abea2b067d9b6623c
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus fb6da71504
gnu: r-reqon: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.48.0.

Change-Id: Idd4e403b3ed3ca84cad80657a46fd4c9e0c1582d
 2023-11-03 22:49:24 +01:00
Ricardo Wurmus b22318e0af
gnu: r-seqbias: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.50.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: Ibf4e49bffefec0eb6a1e4e6d1c29383c37f8bbfb
 2023-11-03 22:49:24 +01:00