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688 Commits (bad368b0d794689f3a8a11b58f1ea4987938682e)

Author SHA1 Message Date
Ricardo Wurmus c5d75df366
gnu: r-ropls: Update to 1.18.8.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.8.
2020-01-27 20:48:36 +01:00
Ricardo Wurmus 062cbc4f2b
gnu: r-destiny: Update to 3.0.1.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.1.
2020-01-27 20:48:36 +01:00
Ricardo Wurmus fd6412cd2c
gnu: r-metap: Update to 1.3.
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
2020-01-27 16:33:27 +01:00
Vagrant Cascadian 5b98473a1f
gnu: r-biocset: Fix spelling of "ability".
* gnu/packages/bioconductor (r-biocset)[description]: Fix typo.
2020-01-24 02:38:13 -08:00
Tobias Geerinckx-Rice 99db6db7be
gnu: Use HTTPS for bioconductor.org.
* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked,
r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno,
r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise.
* gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
2020-01-21 00:43:39 +01:00
Ricardo Wurmus d1ac643062
gnu: r-variancepartition: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus e8ccb98a08
gnu: r-flowworkspace: Update to 3.34.1.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus 3f42bd81a5
gnu: r-ropls: Update to 1.18.6.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus 516fa945b3
gnu: r-mlinterfaces: Update to 1.66.2.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus ac9a9c374c
gnu: r-clusterprofiler: Update to 3.14.3.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus 99e2a24978
gnu: r-inspect: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus 7a8fcdaccc
gnu: r-regioner: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus f8f181ae41
gnu: r-affycoretools: Update to 1.58.4.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus bd824de3ad
gnu: r-inspect: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus c314ff7cd4
gnu: r-multiassayexperiment: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 0718948912
gnu: r-rgadem: Update to 2.34.1.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1.
[propagated-inputs]: Add r-genomicranges.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 0be4d7de9c
gnu: r-clusterprofiler: Update to 3.14.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 7621bf2d19
gnu: r-enrichplot: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus eb6d1adf15
gnu: r-biocsingular: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus be94400cd4
gnu: r-affycoretools: Update to 1.58.3.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus 77e2de3654
gnu: Add r-biodist.
* gnu/packages/bioconductor.scm (r-biodist): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus 0156297f29
gnu: Add r-biocworkflowtools.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus 43b66e3f7c
gnu: Add r-biocset.
* gnu/packages/bioconductor.scm (r-biocset): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus 4a18112dfb
gnu: Add r-biocpkgtools.
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus 4d12c1e335
gnu: Add r-biocor.
* gnu/packages/bioconductor.scm (r-biocor): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus c2b36a0441
gnu: Add r-bioconcotk.
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus 0678479391
gnu: Add r-multiassayexperiment.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus 244270e6ae
gnu: Add r-experimenthub.
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus 49f0860be0
gnu: Add r-biocgraph.
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus f180be2923
gnu: Add r-bioccasestudies.
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus 21afe920f1
gnu: Add r-ebarrays.
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus f388834e11
gnu: Add r-reactomepa.
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus c373223e63
gnu: Add r-graphite.
* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus ff1146b9b1
gnu: Add r-curatedtcgadata.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus 6f15ea2415
gnu: Add r-reactome-db.
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus 29fd736a66
gnu: Add r-biobroom.
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus 48bcbef07a
gnu: Add r-bioassayr.
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus 991554fc92
gnu: Add r-chemminer.
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus d38775b13f
gnu: Add r-bigpint.
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus 820373dbc8
gnu: Add r-bigmemoryextras.
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus 6ca6f8663b
gnu: Add r-biggr.
* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus 5aef09bd0e
gnu: Add r-hyperdraw.
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus 75a8bb3185
gnu: Add r-hypergraph.
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus e823337c6e
gnu: Add r-rsbml.
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus 40fe63ad8a
gnu: Add r-bifet.
* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus de9374b73c
gnu: Add r-bicare.
* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus 6bd50acf41
gnu: Add r-bhc.
* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus 75eb1149f3
gnu: Add r-bgx.
* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus d11d6feafa
gnu: Add r-bgmix.
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus 6e10ac0780
gnu: r-destiny: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus b4ee414880
gnu: r-siggenes: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus 4efdac562b
gnu: r-bumphunter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus dfd4287cba
gnu: r-minfi: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus b57cffb974
gnu: r-methylumi: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus 8f7bc872e1
gnu: r-lumi: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus a2877d6970
gnu: r-linnorm: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus 1b890c3231
gnu: r-ioniser: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus a18f325e0a
gnu: r-triform: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus 9b72bbf784
gnu: r-varianttools: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus 9f218627d6
gnu: r-heatplus: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus c245ec3d49
gnu: r-gosemsim: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus 5ed767521c
gnu: r-anota: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus 869965df1c
gnu: r-sigpathway: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus b4e1268c7b
gnu: r-fgsea: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus 166b3c2da6
gnu: r-dose: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
2019-12-15 15:39:12 +01:00
Ricardo Wurmus 0654a9bc3b
gnu: r-enrichplot: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus 08c01b7e0e
gnu: r-clusterprofiler: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus 6374984a20
gnu: r-mlinterfaces: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus fc4a9dd579
gnu: r-annaffy: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus 4ed18ddc0f
gnu: r-a4core: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus 102b982cbe
gnu: r-a4classif: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus d6859c7c9b
gnu: r-a4preproc: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus 977a7802c1
gnu: r-a4reporting: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus 85c945aa97
gnu: r-a4base: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus 344eb4c404
gnu: r-a4: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
2019-12-15 15:39:11 +01:00
Ricardo Wurmus aef4b34669
gnu: r-abseqr: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 32b471f4a7
gnu: r-bacon: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 6dfe5056c9
gnu: r-rgadem: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 35a1b3ec4c
gnu: r-motiv: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0.
[propagated-inputs]: Add r-genomicranges.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus dda936ca9a
gnu: r-motifstack: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0.
[propagated-inputs]: Add r-ggplot2.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus e89f16e646
gnu: r-genomicscores: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 36aecb2105
gnu: r-atacseqqc: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.1.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 4997e0254a
gnu: r-gofuncr: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 307667c4ef
gnu: r-abaenrichment: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 3a731c8334
gnu: r-annotationfuncs: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus eda4908556
gnu: r-annotationtools: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 50e6f76278
gnu: r-allelicimbalance: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
2019-12-15 15:39:10 +01:00
Ricardo Wurmus 3a35d27450
gnu: r-aucell: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0.
[propagated-inputs]: Add r-biocgenerics and r-s4vectors.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus ca7192a1c9
gnu: r-ebimage: Update to 4.28.1.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus 3796e2442b
gnu: r-yamss: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.0.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus cf0a1cb3b4
gnu: r-gtrellis: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.18.0.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus 4f8e0487fc
gnu: r-somaticsignatures: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.22.0.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus 580e434267
gnu: r-yapsa: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.12.0.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus 2f90bab8d1
gnu: r-gcrma: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.58.0.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus a87aa2ff5a
gnu: r-simpleaffy: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.62.0.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus 87942b74c6
gnu: r-yaqcaffy: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.46.0.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus eb697ff5bb
gnu: r-quantro: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.20.0.
2019-12-15 15:39:09 +01:00
Ricardo Wurmus 94fdea1267
gnu: r-yarn: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.12.0.
2019-12-15 15:39:08 +01:00
Ricardo Wurmus f0dd0fec40
gnu: r-roar: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.22.0.
2019-12-15 15:39:08 +01:00
Ricardo Wurmus 1f0101ae01
gnu: r-xbseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.18.0.
2019-12-15 15:39:08 +01:00