00ed2901f5
gnu: cabal-install, ghc-cabal-syntax: Use HTTPS home page.
...
* gnu/packages/haskell-apps.scm (cabal-install)[home-page]: Use HTTPS.
* gnu/packages/haskell-xyz.scm (ghc-cabal-syntax)[home-page]: Likewise.
2023-07-09 02:00:17 +02:00
2195645725
gnu: bwa-pssm: Update home page.
...
* gnu/packages/bioinformatics.scm (bwa-pssm)[home-page]: Update.
2023-07-09 02:00:17 +02:00
de088be221
gnu: brdf-explorer: Mark up description.
...
* gnu/packages/graphics.scm (brdf-explorer)[synopsis, description]:
Use @acronym{}.
2023-07-09 02:00:10 +02:00
c848cd643c
gnu: brdf-explorer: Use Web Archived home page.
...
* gnu/packages/graphics.scm (brdf-explorer)[home-page]:
Refer to Web Archive.
2023-07-09 02:00:10 +02:00
6f80e25f35
gnu: blasr-libcpp, blasr: Use Web Archived home pages.
...
* gnu/packages/bioinformatics.scm (blasr-libcpp, blasr)[home-page]:
Refer to Web Archive.
2023-07-09 02:00:10 +02:00
a1ae54b10b
gnu: yadifa: Update to 2.6.4.
...
* gnu/packages/dns.scm (yadifa): Update to 2.6.4.
[arguments]: Add a new 'unhard-code phase.
2023-07-09 02:00:10 +02:00
1c347cd56a
gnu: knot: Use G-expressions.
...
* gnu/packages/dns.scm (knot)[arguments]:
Rewrite as G-expressions.
2023-07-09 02:00:10 +02:00
60bb22a9da
gnu: knot: Update to 3.2.8.
...
* gnu/packages/dns.scm (knot): Update to 3.2.8.
2023-07-09 02:00:09 +02:00
eaac211730
gnu: nsd: Use G-expressions.
...
* gnu/packages/dns.scm (nsd)[arguments]:
Rewrite as G-expressions.
2023-07-09 02:00:09 +02:00
626c0b7cd6
gnu: nsd: Update to 4.7.0.
...
* gnu/packages/dns.scm (nsd): Update to 4.7.0.
2023-07-09 02:00:09 +02:00
69c3a06a1c
gnu: btor2tools: Use HTTPS home page.
...
* gnu/packages/maths.scm (btor2tools)[home-page]: Use HTTPS.
2023-07-09 02:00:09 +02:00
86e95b2205
gnu: boolector: Use HTTPS home page.
...
* gnu/packages/maths.scm (boolector)[home-page]: Use HTTPS.
2023-07-09 02:00:01 +02:00
917a299831
gnu: python-yubikey-manager: Update to 5.1.1.
...
* gnu/packages/security-tokens.scm (python-yubikey-manager): Update to
5.1.1.
[source]: Update url.
[build-system]: Switch to pyproject-build-system.
[arguments]: Delete.
[propagated-inputs]: Remove python-six. Add python-keyring. Reorder alphabetically.
[native-inputs]: Remove python-mock. Add python-makefun, python-poetry-code and
python-pytest. Reorder alphabetically.
Co-authored-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14 12:16:39 -04:00
51de28452a
gnu: Add python-makefun.
...
* gnu/packages/python-xyz.scm (python-makefun): New variable.
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14 12:16:37 -04:00
66f0304e1d
gnu: python-fido2: Update to 1.1.1.
...
* gnu/packages/security-tokens.scm (python-fido2): Update to 1.1.1.
[build-system]: Switch to pyproject-build-system.
[arguments]: Enable tests. Use gexps in phases.
[propagated-inputs]: Remove python-six. Add python-pyscard.
[native-inputs]: Remove python-mock and python-pyfakefs. Add
python-poetry-core and python-pytest.
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14 12:16:31 -04:00
221806905b
gnu: python-pyscard: Update to 2.0.7.
...
* gnu/packages/security-token.scm (python-pyscard): Update to 2.0.7.
[arguments]{phases}: Use search-input-directory. Remove trailing #t.
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14 12:13:34 -04:00
09e73683a2
gnu: godot: Update to 4.1. Rename godot@3 to godot-lts.
...
* gnu/packages/game-development.scm (godot): Update to 4.1.
[source]: Update snippet: remove embree and enet; add amd-fsr, astcenc,
basis_universal, brotli, linuxbsd_headers, etcpak, meshoptimizer, msdfgen,
noise, openxr, rvo2, spirv-reflect, thorvg, volk, vulkan.
[arguments]: Remove #:scons. Update #:scons-flags to unbundle more
libraries.
[phases]: Remove 'build-headless phase (headless is no longer has a separate
build). Add 'fix-dl-open-paths and 'unbundle-xkbcommon phases. In 'install
phase, remove headless output. Update 'wrap phase to remove eudev.
[outputs]: Remove headless.
[inputs]: Add dbus, embree, enet, fontconfig, glslang, libpng, harfbuzz,
icu4c, libxkbcommon, openxr, speech-dispatcher, vulkan-loader, zlib. Remove
bullet. Rename freetype to freetype-with-brotli.
(godot-lts): New variable. godot@3 is the LTS release.
* gnu/packages/games.scm (superstarfighter)[native-inputs]: Use it.
[inputs]: Use it.
2023-07-14 11:08:31 -04:00
49b0a5ee5f
gnu: Add freetype-with-brotli.
...
* gnu/packages/fontutils.scm (freetype-with-brotli): New variable.
2023-07-14 10:53:19 -04:00
ff4f5a725e
gnu: racket: Update to 8.9.
...
* gnu/packages/chez.scm (chez-scheme-for-racket): Update to
9.9.9-pre-release.16.
* gnu/packages/racket.scm (%racket-version): Update to 8.9.
(racket)[inputs]<deinprogramm, draw, drracket, future-visualizer, gui>
<htdp, macro-debugger, math, pict, plot, rackunit, redex, scribble>
<slideshow, snip, typed-racket, srfi, swindle, syntax-color>
<web-server>: Update checksums.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-14 16:16:25 +02:00
bdd359526e
gnu: avfs: Use HTTPS home page.
...
* gnu/packages/file-systems.scm (avfs)[home-page]: Use HTTPS.
2023-07-09 02:00:11 +02:00
2be1a6795f
gnu: 4ti2: Update home page.
...
* gnu/packages/maths.scm (4ti2)[home-page]: Update.
2023-07-09 02:00:11 +02:00
8a9a7ae36e
gnu: aumix: Use Web Archive URLs.
...
* gnu/packages/linux.scm (aumix)[source, home-page]:
Use copies archived by the Wayback Machine.
2023-07-09 02:00:10 +02:00
0f766e8439
gnu: armadillo: Update to 12.4.1.
...
* gnu/packages/maths.scm (armadillo): Update to 12.4.1.
2023-07-09 02:00:10 +02:00
24d2c2bcda
gnu: aspell-dict-nb: Correct to 0.50-2.
...
* gnu/packages/aspell.scm (aspell-dict-nb): Fix version number.
No hash change.
2023-07-09 02:00:10 +02:00
6d552a1426
gnu: Use aquamaniac.de/ as home page for its projects.
...
* gnu/packages/gnucash.scm (gwenhywfar, aqbanking)[home-page]:
Use top-level directory as done upstream.
2023-07-09 02:00:09 +02:00
67fb8efdf7
gnu: ghostscript: Fix CVE-2023-36664.
...
* gnu/packages/ghostscript.scm (ghostscript/fixed): New variable.
(ghostscript)[replacement]: Assign it to new field.
* gnu/packages/patches/ghostscript-CVE-2023-36664.patch,
gnu/packages/patches/ghostscript-CVE-2023-36664-fixup.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2023-07-09 02:00:04 +02:00
b29bd4d35e
gnu: antiword: Use Web Archive URLs.
...
* gnu/packages/textutils.scm (antiword)[source, home-page]:
Use copies archived by the Wayback Machine.
2023-07-09 02:00:03 +02:00
5cbb60562d
gnu: anthy: Mark up description.
...
* gnu/packages/anthy.scm (anthy)[description]: Use @file{}.
2023-07-09 02:00:03 +02:00
b0e5576702
gnu: anthy: Add source mirror URL.
...
* gnu/packages/anthy.scm (anthy)[source]: Add a Japanese Gentoo
distfiles mirror.
2023-07-09 02:00:03 +02:00
5799552739
gnu: altermime: Cross-compile.
...
* gnu/packages/mail.scm (altermime)[arguments]: Use CC-FOR-TARGET.
Add a new 'do-not-strip phase.
2023-07-09 02:00:03 +02:00
bce8c88f42
gnu: altermime: Use G-expressions.
...
* gnu/packages/mail.scm (altermime)[arguments]:
Rewrite as G-expressions. Don't explicitly return #t from phases.
2023-07-09 02:00:02 +02:00
1d7e1fbc38
gnu: altermime: Download over HTTPS.
...
* gnu/packages/mail.scm (altermime)[source]: Use HTTPS.
2023-07-09 02:00:02 +02:00
11ae5491f9
gnu: alpine: Download over HTTPS.
...
* gnu/packages/mail.scm (alpine)[source]: Use HTTPS.
2023-07-09 02:00:02 +02:00
d3fa3e7313
gnu: aiger: Use HTTPS source & home page.
...
* gnu/packages/maths.scm (aiger)[source, home-page]: Use HTTPS.
2023-07-09 02:00:01 +02:00
24e5db1bc2
gnu: borg: Update to 1.2.4.
...
* gnu/packages/backup.scm (borg): Update to 1.2.4.
2023-07-09 02:00:01 +02:00
5f7c714c63
gnu: rumpkernel: Don't error for non x86 systems.
...
As the lack of handling other systems, say aarch64-linux here seemed to cause
problems with guix pull on these systems. This should work around #64609 .
* gnu/packages/hurd.scm (rumpkernel)[arguments]: Don't error for any system.
2023-07-14 11:54:02 +01:00
a041bbb4bf
Revert "gnu: mig: Update to 1.8+git20230520."
...
As noted in the comment, I think using git-fetch caused problems computing
derivaations for i586-linux (Guix would just use more and more memory).
This reverts commit 999a6ac0cf
2023-07-14 11:53:12 +01:00
ddbfef2e95
gnu: zig-0.9: Fix building on riscv64-linux.
...
* gnu/packages/zig.scm (zig-0.9)[source]: Add patch.
[arguments]: Skip tests when building for riscv64-linux. When building
for riscv64-linux add a phase to adjust the tests.
* gnu/packages/patches/zig-0.9-riscv-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2023-07-14 09:20:01 +03:00
92d18dc568
gnu: linux-libre: Update to 6.3.13.
...
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.13.
(linux-libre-6.3-pristine-source): Update hash.
2023-07-13 22:17:27 -04:00
ea81a0417a
gnu: Add python-plotnine.
...
* gnu/packages/python-science.scm (python-plotnine): New variable.
2023-07-13 22:29:24 +02:00
f7c6d31e33
gnu: python-mizani: Fix embedded version string.
...
* gnu/packages/python-xyz.scm (python-mizani)[native-inputs]: Add
python-setuptools-scm to correct embedded version form 0.0.0 to 0.9.2.
2023-07-13 22:29:24 +02:00
b4fe82bd8a
gnu: gnumach: Disable builtin networking.
...
See also
https://logs.guix.gnu.org/hurd/2023-05-25.log#163610
* gnu/packages/hurd.scm (gnumach)[arguments]: Add --disable-net-group,
--disable-pcmcia-group, and --disable-wireless-group.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 19:00:09 +02:00
9c1957921a
services: static-networking: Support netdde for the Hurd.
...
As suggested by Sergey Bugaev on bug-hurd
https://lists.gnu.org/archive/html/bug-hurd/2023-05//msg00455.html
* gnu/services/base.scm (static-networking->hurd-pfinet-options): Use
/DEV/ethX. Use long options for settrans.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 19:00:05 +02:00
cefcf0fb04
system: hurd: Add netdde to %base-packages/hurd.
...
* gnu/system/hurd.scm (%base-packages/hurd): Add netdde.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 19:00:02 +02:00
030b15d466
hurd-boot: Cater for netdde.
...
* gnu/build/hurd-boot.scm (set-hurd-device-translators): Setup translators for
netdde, eth{0,1}. Create /servers/socket/{inet,inet6} symlinks.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:57 +02:00
37256c02a2
gnu: netdde: Resurrect and update to 2.6.32.65-2-e67c284ac1.
...
* gnu/packages/patches/netdde-build-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/hurd.scm (netdde)[source]: Update to
e67c284ac113d939b10b4578334f27dab29d5b08 and use it.
[inputs]: Add zlib:static.
[arguments]: Remove #true from build phases. In 'build' phase, remove
obsolete CFLAGS, and also build static version. In 'install' phase,
install them in <out>/hurd. There is no check target, so set #:tests?
to #false.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:22 +02:00
bbfb41ed9d
gnu: gnumach: Support "noide" argument.
...
* gnu/packages/patches/gnumach-support-noide.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/hurd.scm (gnumach-headers): Use it.
* doc/guix.texi (Bootloader Configuration): Document it.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:17 +02:00
c22c29b0c4
bootloader: grub: Use rumpdisk-style root when booting with "noide".
...
* gnu/bootloader/grub.scm (make-grub-configuration): When "noide" is in
arguments, use device name "wd0" rather than "hd0".
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:13 +02:00
7f86dad611
system: hurd: Boot with pci.arbiter and rumpdisk.
...
* gnu/system.scm (hurd-multiboot-modules): Add commands for pci.arbiter and
rumpdisk.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:06 +02:00
09657f3ee7
services: childhurd: Bump default qemu memory to 2048MB.
...
When booting with pci-arbiter and rumpdisk and using 1024MB of memory for
qemu, booting hangs, or seems to hang, at the end of the rumpdisk boot
messages. At least 1200MB is required, currently.
* gnu/services/virtualization.scm (<hurd-vm-configuration>)[memory-size]: Bump
to 2048.
* gnu/system/examples/bare-hurd.tmpl: Suggest using 2048 here too. Update
example `guix system image' and "qemu" command lines too.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:02 +02:00
fe873fb417
hurd-boot: Setup pci-arbiter and rumpdisk translators.
...
* gnu/build/hurd-boot.scm (make-hurd-device-nodes): Create "servers/bus/pci.
(set-hurd-device-translators): Create transators for pci-arbiter, rumpdisk,
and /dev/wd0..3s1..4.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:58 +02:00
5981e99f0a
gnu: hurd: Add rumpkernel.
...
* gnu/packages/patches/hurd-fix-rumpdisk-build.patch,
gnu/packages/patches/hurd-rumpdisk-no-hd.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/hurd.scm (hurd): Use them.
(hurd)[inputs]: Replace util-linux with util-linux:static, add parted,
rumpkernel.
[arguments]: Rename `prepare-dde' phase to 'prepare-addons'. Add "rumpdisk"
directory. Add --enable-static-progs=... option to #:configure-flags, and
remove --without-parted.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:53 +02:00
451b2db3df
gnu: parted: Support building for the Hurd.
...
* gnu/packages/disk.scm (parted)[inputs]: Remove lvm2, add hurd-minimal
when building for the Hurd.
[arguments]: Add configure-flag '--disable-device-mapper' when building for
the Hurd.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:47 +02:00
c8799fafa4
gnu: hurd-minimal: Include libshouldbeinlibc and libstore.
...
* gnu/packages/hurd.scm (hurd-minimal)[inputs]: Add gnumach-headers.
[arguments]: Rewrite to include libshouldbeinlibc and libstore.
* gnu/packages/cross-base.scm (cross-kernel-headers*): Update xhurd-minimal
accordingly: Add xgnumach-headers, add them to cpath, use gexps for
modify-phases, add delete-shared-target phase.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:43 +02:00
f86de02dde
gnu: Add rumpkernel.
...
This uses the Debian Salsa rumpkernel package git as upstream as that is where
delopment happens. Once things have stabalized upstream may change to the
NetBSD git from where Debian takes their snapshots.
* gnu/packages/hurd.scm (rumpkernel): New variable.
(hurd-headers)[native-inputs]: Use cross-mig directly.
(gnumach)[native-inputs]: Likewise.
(hurd)[native-inputs]: Likewise.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:39 +02:00
18757f1a25
gnu: hurd: Update libpciaccess to 0.17.
...
As suggested by youpi on IRC
https://logs.guix.gnu.org/hurd/2023-05-17.log#132259
libpciaccess-0.16 is too old for the Hurd and would need Hurd-specific patches
while libpciaccess-0.17 works out of the box.
* gnu/packages/hurd.scm (hurd)[inputs]: Use libpciaccess-0.17.
(netdde)[inputs]: Likewise.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:34 +02:00
5ffdcb3aa1
gnu: Add libpciaccess-0.17.
...
* gnu/packages/xorg.scm (libpciaccess-0.17): New variable.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:06 +02:00
1f19387ca7
gnu: hurd: Update to v0.9.git20230216.
...
* gnu/packages/hurd.scm (hurd-headers): Update to v0.9.git20230216.
2023-07-13 18:20:07 +02:00
999a6ac0cf
gnu: mig: Update to 1.8+git20230520.
...
* gnu/packages/hurd.scm (mig)[source]: Update to 1.8+git20230520.
* gnu/packages/patches/gnumach-add-missing-const_mach_port_name_array_t-type.patch:
Drop patch.
* gnu/local.mk (dist_patch_DATA): Unregister it.
2023-07-13 18:20:06 +02:00
2edd67d34b
gnu: gnumach: Update to 1.8+git20221224.
...
* gnu/packages/hurd.scm (gnumach-headers): Update to 1.8+git20221224.
2023-07-13 18:20:06 +02:00
0dd293b4d9
gnu: Add libc-for-target and glibc/hurd.
...
* gnu/packages/patches/glibc-2.37-hurd-clock_t_centiseconds.patch
* gnu/packages/patches/glibc-2.37-hurd-local-clock_gettime_MONOTONIC.patch
* gnu/packages/patches/glibc-2.37-versioned-locpath.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/base.scm (glibc/hurd, libc-for-target): New variables.
(glibc/hurd-headers): Use glibc/hurd.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[outputs,
source, arguments]
(glibc-final)[source]: Use libc-for-target instead of glibc.
* gnu/packages/cross-base.scm (cross-libc/deprecated, cross-libc*): Use
libc-for-target.
This part fixes
https://issues.guix.gnu.org/63641#25
* gnu/packages/commencement.scm (%final-inputs): Change to memoized lambda
taking "system".
* gnu/packages/commencement.scm (canonical-package): Likewise, and update
user, passing (%current-system).
(make-gcc-toolchain): Update user, passing (%current-system).
* gnu/packages/base.scm (%final-inputs): Likewise.
* guix/scripts/refresh.scm (options->update-specs): Likewise.
* guix/build-system/gnu.scm (standard-packages): Add optional "system"
parameter.
(lower): Update caller.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Co-authored-by: Janneke Nieuwenhuizen <janneke@gnu.org>
2023-07-13 18:20:05 +02:00
0613df90dd
gnu: hurd: Update supported systems.
...
* gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal,
hurd-core-headers, gnumach): Update supported systems to %hurd-systems.
2023-07-13 18:20:04 +02:00
c2bb342b5f
gnu: gnumach-headers: Cross-build without relying on x86.
...
* gnu/packages/hurd.scm (gnumach-headers): Remove configure flags where we
say the builder is running x86.
* gnu/packages/cross-base.scm (cross-gnumach-headers): Work around limitation
of build system, by manually changing the target host_cpu without relying on
--host, because we don't have a working cross-compiler yet.
2023-07-13 18:20:04 +02:00
85ebfcf4ff
gnu: glibc/hurd-headers: Properly cross-build.
...
* gnu/packages/base.scm (glibc/hurd-headers): Rely on cross-mig, and remove
hardcoded configure flag `--host=i586-pc-gnu`.
* gnu/packages/cross-base.scm (cross-kernel-headers*): Add `--host` and
`--build` configure flags.
2023-07-13 18:20:01 +02:00
ff208b4b62
gnu: arpack-ng: Update to 3.9.0.
...
* gnu/packages/maths.scm (arpack-ng): Update to 3.9.0.
[source]: Add 'patches'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, and LIBTOOL.
(arpack-ng-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Use gexps.
* gnu/packages/patches/arpack-ng-propagate-rng-state.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2023-07-13 17:59:57 +02:00
5594f4c999
gnu: sssd: Update to 2.9.1.
...
* gnu/packages/sssd.scm (sssd): Update to 2.9.1.
[native-inputs]: Add bc.
* gnu/packages/patches/sssd-system-directories.patch: Adjust for new version.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-13 17:58:38 +02:00
ae92d98b93
gnu: clang-runtime-15: Fix address sanitizer support
...
$ guix shell clang-toolchain@15 -- clang -o test -fsanitize=address test.c
ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan_static-x86_64.a: No such file or directory
ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan-x86_64.a: No such file or directory
clang-15: error: linker command failed with exit code 1 (use -v to see invocation)
* gnu/packages/llvm.scm (clang-runtime-15): Fix address sanitizer
support by bringing back the static libraries.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-13 17:20:02 +02:00
dd4c199210
gnu: libleak: Update to 0.3.6.
...
* gnu/packages/debug.scm (libleak): Update to 0.3.6.
2023-07-13 10:47:33 +02:00
2794caed7c
gnu: Add r-numbat.
...
* gnu/packages/bioinformatics.scm (r-numbat): New variable.
2023-07-12 21:34:07 +02:00
3b524cde71
gnu: Add r-bpcells.
...
* gnu/packages/bioinformatics.scm (r-bpcells): New variable.
2023-07-12 16:45:42 +02:00
713d3952e4
gnu: nyxt: Update to 3.4.0.
...
* gnu/packages/web-browsers.scm (nyxt): Update to 3.4.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-12 16:11:40 +02:00
e94abf55b7
gnu: strace: Update to 6.4.
...
* gnu/packages/linux.scm (strace): Update to 6.4.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-12 15:57:54 +02:00
b90310cf85
gnu: go: Add CPU tuning targets.
...
* gnu/packages/golang.scm (go-1.17)[properties]: New field.
(%go-1.17-arm-micro-architectures,
%go-1.17-powerpc64le-micro-architectures,
%go-1.18-x86_64-micro-architectures): New variables.
(go-1.18)[properties]: New field.
2023-07-12 16:48:28 +03:00
db6503a6ff
gnu: %gcc-11-x86_64-micro-architectures: Add psabi entries.
...
* gnu/packages/gcc.scm (%gcc-11-x86_64-micro-architectures): Add entries
for x86_64-v{1,2,3,4}.
2023-07-12 16:48:24 +03:00
f2f27c4952
gnu: r-tcgabiolinks: Update to 2.28.3.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.3.
2023-07-12 14:29:11 +02:00
2ef18c24a4
gnu: r-bionero: Update to 1.8.5.
...
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.5.
[propagated-inputs]: Remove r-ggnewscale and r-networkd3; add r-ggdendro and r-rlang.
2023-07-12 14:29:11 +02:00
cbdaf26d0c
gnu: r-biocthis: Update to 1.10.3.
...
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.3.
2023-07-12 14:29:11 +02:00
165a4755a4
gnu: r-basilisk: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.1.
2023-07-12 14:29:11 +02:00
bdd11e0229
gnu: r-delayedmatrixstats: Update to 1.22.1.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.1.
2023-07-12 14:29:11 +02:00
5a61307327
gnu: r-sparsematrixstats: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.2.
2023-07-12 14:29:11 +02:00
72c0125649
gnu: r-fishpond: Update to 2.6.2.
...
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.2.
2023-07-12 14:29:11 +02:00
3bfbd6ddd8
gnu: r-bioccheck: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.1.
2023-07-12 14:29:11 +02:00
aada7f3a53
gnu: r-universalmotif: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.1.
2023-07-12 14:29:11 +02:00
e728562cd3
gnu: r-variancepartition: Update to 1.30.2.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.2.
2023-07-12 14:29:11 +02:00
c4ea43f75c
gnu: r-variantfiltering: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.1.
2023-07-12 14:29:11 +02:00
8637eba2a5
gnu: r-quasr: Update to 1.40.1.
...
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.1.
2023-07-12 14:29:11 +02:00
1d53aa680e
gnu: r-motifbreakr: Update to 2.14.2.
...
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.14.2.
2023-07-12 14:29:11 +02:00
a98f8bdcf3
gnu: r-lpsymphony: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.1.
[native-inputs]: Add gfortran.
2023-07-12 14:29:10 +02:00
0514c45d4a
gnu: r-glmgampoi: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.2.
2023-07-12 14:29:10 +02:00
75a5504e49
gnu: r-interactionset: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.1.
2023-07-12 14:29:10 +02:00
6652f72e13
gnu: r-matrixgenerics: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.2.
2023-07-12 14:29:10 +02:00
1b83659902
gnu: r-systempiper: Update to 2.6.3.
...
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.3.
2023-07-12 14:29:10 +02:00
0a0304ef3a
gnu: r-summarizedexperiment: Update to 1.30.2.
...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.2.
2023-07-12 14:29:10 +02:00
464ad1fd79
gnu: r-maaslin2: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.14.1.
[propagated-inputs]: Remove r-lpsymphony; add r-tibble.
2023-07-12 14:29:10 +02:00
5588562fb9
gnu: r-limma: Update to 3.56.2.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.2.
2023-07-12 14:29:10 +02:00
5db8d3e600
gnu: r-lfa: Update to 2.0.11.
...
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.0.11.
[propagated-inputs]: Add r-rspectra.
2023-07-12 14:29:10 +02:00
3193a2a04d
gnu: r-genomicfeatures: Update to 1.52.1.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.1.
2023-07-12 14:29:10 +02:00
2b62bc3f67
gnu: r-deseq2: Update to 1.40.2.
...
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.2.
2023-07-12 14:29:10 +02:00
6604189891
gnu: r-biomart: Update to 2.56.1.
...
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.1.
2023-07-12 14:29:10 +02:00
1f0633db11
gnu: r-annotationforge: Update to 1.42.2.
...
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.2.
2023-07-12 14:29:10 +02:00
c397d6a5e1
gnu: r-genomeinfodb: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.1.
2023-07-12 14:29:10 +02:00
3c201e1aab
gnu: r-annotationdbi: Update to 1.62.2.
...
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.2.
2023-07-12 14:29:10 +02:00
565d84170a
gnu: r-affy: Update to 1.78.1.
...
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.1.
2023-07-12 14:29:10 +02:00
a9d140996c
gnu: r-isoformswitchanalyzer: Update to 2.0.1.
...
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.0.1.
[propagated-inputs]: Remove r-drimseq; add r-biocparallel, r-pfamanalyzer, r-s4vectors,
r-saturn, r-summarizedexperiment, r-sva, and r-tidyr.
2023-07-12 14:29:09 +02:00
b864a5956f
gnu: r-iranges: Update to 2.34.1.
...
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.1.
2023-07-12 14:29:09 +02:00
5eaf9f6b83
gnu: r-delayedarray: Update to 0.26.6.
...
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.6.
2023-07-12 14:29:09 +02:00
6e83dee12a
gnu: r-bambu: Update to 3.2.5.
...
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.5.
2023-07-12 14:29:09 +02:00
f0c82ddced
gnu: r-alevinqc: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.16.1.
2023-07-12 14:29:09 +02:00
4db85c197b
gnu: r-ancombc: Update to 2.2.1.
...
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.1.
[propagated-inputs]: Remove r-dplyr, r-emmeans, r-magrittr, r-rlang, r-rngtools,
r-tibble, and r-tidyr; add r-gtools, r-matrix, and r-multcomp.
2023-07-12 14:29:09 +02:00
558637533f
gnu: r-gdsfmt: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.1.
[properties]: Tell updater to leave the extra inputs be.
2023-07-12 14:29:09 +02:00
b4cafa71ae
gnu: Add r-saturn.
...
* gnu/packages/bioconductor.scm (r-saturn): New variable.
2023-07-12 14:29:09 +02:00
990bac0ea5
gnu: Add r-pfamanalyzer.
...
* gnu/packages/bioconductor.scm (r-pfamanalyzer): New variable.
2023-07-12 14:29:09 +02:00
b10bff65be
gnu: r-mzr: Update to 2.34.1.
...
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.1.
[properties]: Tell updater to not remove the "boost" input.
2023-07-12 14:29:09 +02:00
ee50cae529
gnu: r-norm: Update to 1.0-11.1.
...
* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.1.
2023-07-12 14:29:09 +02:00
c141725c65
gnu: r-logspline: Update to 2.1.20.
...
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.20.
2023-07-12 14:29:09 +02:00
5a1c16fa18
gnu: r-pbapply: Update to 1.7-2.
...
* gnu/packages/statistics.scm (r-pbapply): Update to 1.7-2.
2023-07-12 14:29:09 +02:00
42c29d9d22
gnu: r-robust: Update to 0.7-2.
...
* gnu/packages/statistics.scm (r-robust): Update to 0.7-2.
2023-07-12 14:29:09 +02:00
2108aa1975
gnu: r-rrcov: Update to 1.7-4.
...
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-4.
2023-07-12 14:29:09 +02:00
387c1fafce
gnu: r-robustbase: Update to 0.99-0.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-0.
2023-07-12 14:29:08 +02:00
86c7032abf
gnu: r-deoptimr: Update to 1.0-14.
...
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-14.
2023-07-12 14:29:08 +02:00
f9dc378cb4
gnu: r-mvtnorm: Update to 1.2-2.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-2.
2023-07-12 14:29:08 +02:00
e8ef13993e
gnu: r-rmarkdown: Update to 2.23.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.23.
2023-07-12 14:29:08 +02:00
7cb71cb2fb
gnu: r-rcpparmadillo: Update to 0.12.4.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.4.1.0.
2023-07-12 14:29:08 +02:00
b8112b4600
gnu: r-rstudioapi: Update to 0.15.0.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.15.0.
2023-07-12 14:29:08 +02:00
c5c0f85b77
gnu: r-xml2: Update to 1.3.5.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.5.
2023-07-12 14:29:08 +02:00
4ec94fe0a9
gnu: r-locfit: Update to 1.5-9.8.
...
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.8.
2023-07-12 14:29:08 +02:00
1493844a1e
gnu: r-dbplyr: Update to 2.3.3.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.3.
2023-07-12 14:29:08 +02:00
6276fbb64a
gnu: r-testthat: Update to 3.1.10.
...
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.10.
2023-07-12 14:29:08 +02:00
b372435930
gnu: r-matrix: Update to 1.6-0.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-0.
2023-07-12 14:29:08 +02:00
f072cd9486
gnu: r-kernsmooth: Update to 2.23-22.
...
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-22.
2023-07-12 14:29:08 +02:00
42b5758b82
gnu: r-paws: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-paws): Update to 0.3.0.
2023-07-12 14:29:08 +02:00
5933aadf2f
gnu: r-paws-compute: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-paws-compute): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
c7d49778e2
gnu: r-paws-storage: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-paws-storage): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
39302d72b8
gnu: r-paws-database: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-paws-database): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
6df06f6712
gnu: r-paws-networking: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-paws-networking): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
5e436baab7
gnu: r-paws-management: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-paws-management): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
969d35e169
gnu: r-paws-machine-learning: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
9ac7524dd4
gnu: r-paws-analytics: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
885c7b0b3c
gnu: r-paws-security-identity: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
f85b362b81
gnu: r-paws-application-integration: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
688e22f4b7
gnu: r-paws-end-user-computing: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
52312a4551
gnu: r-paws-developer-tools: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-paws-developer-tools): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
17148282b6
gnu: r-paws-cost-management: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-paws-cost-management): Update to 0.3.1.
2023-07-12 14:29:07 +02:00
a656a07e37
gnu: r-paws-customer-engagement: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.3.0.
2023-07-12 14:29:07 +02:00
8302b17bff
gnu: r-paws-common: Update to 0.5.8.
...
* gnu/packages/cran.scm (r-paws-common): Update to 0.5.8.
2023-07-12 14:29:07 +02:00
432ffdb433
gnu: r-delaporte: Update to 8.1.1.
...
* gnu/packages/cran.scm (r-delaporte): Update to 8.1.1.
2023-07-12 14:29:07 +02:00
6945b8502a
gnu: r-intervals: Update to 0.15.4.
...
* gnu/packages/cran.scm (r-intervals): Update to 0.15.4.
2023-07-12 14:29:07 +02:00
24177b718f
gnu: r-readtext: Update to 0.90.
...
* gnu/packages/cran.scm (r-readtext): Update to 0.90.
2023-07-12 14:29:07 +02:00
7ecefb14dd
gnu: r-downlit: Update to 0.4.3.
...
* gnu/packages/cran.scm (r-downlit): Update to 0.4.3.
2023-07-12 14:29:07 +02:00
362b352c92
gnu: r-mlr3tuning: Update to 0.19.0.
...
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.19.0.
[native-inputs]: Add r-knitr.
2023-07-12 14:29:07 +02:00
11fe7a5bdc
gnu: r-seurat: Update to 4.3.0.1.
...
* gnu/packages/cran.scm (r-seurat): Update to 4.3.0.1.
2023-07-12 14:29:07 +02:00
e744151010
gnu: r-scattermore: Update to 1.2.
...
* gnu/packages/cran.scm (r-scattermore): Update to 1.2.
2023-07-12 14:29:07 +02:00
869a579c83
gnu: r-confintr: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-confintr): Update to 1.0.2.
2023-07-12 14:29:07 +02:00
ad78b3cc3d
gnu: r-rfast: Update to 2.0.8.
...
* gnu/packages/cran.scm (r-rfast): Update to 2.0.8.
2023-07-12 14:29:06 +02:00
e3fd0a9bcb
gnu: r-cpp11: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-cpp11): Update to 0.4.4.
2023-07-12 14:29:06 +02:00
4ed654c934
gnu: r-spatstat-geom: Update to 3.2-2.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-2.
2023-07-12 14:29:06 +02:00
1bec2b33da
gnu: r-spatstat-sparse: Update to 3.0-2.
...
* gnu/packages/cran.scm (r-spatstat-sparse): Update to 3.0-2.
2023-07-12 14:29:06 +02:00
86231c1cfd
gnu: r-fastshap: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-fastshap): Update to 0.1.0.
[propagated-inputs]: Remove r-abind, r-ggplot2, r-gridextra, r-matrixstats, r-plyr, and
r-tibble; add r-foreach.
[native-inputs]: Add r-knitr.
2023-07-12 14:29:06 +02:00
4169a87e19
gnu: r-scatterpie: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-scatterpie): Update to 0.2.1.
2023-07-12 14:29:06 +02:00
084af94196
gnu: r-aws: Update to 2.5-3.
...
* gnu/packages/cran.scm (r-aws): Update to 2.5-3.
2023-07-12 14:29:06 +02:00
1d933c516d
gnu: r-kutils: Update to 1.72.
...
* gnu/packages/cran.scm (r-kutils): Update to 1.72.
2023-07-12 14:29:06 +02:00
c09ccaa7f2
gnu: r-stanheaders: Update to 2.26.27.
...
* gnu/packages/cran.scm (r-stanheaders): Update to 2.26.27.
2023-07-12 14:29:06 +02:00
b12240ae55
gnu: r-torch: Update to 0.11.0.
...
* gnu/packages/cran.scm (r-torch): Update to 0.11.0.
2023-07-12 14:29:06 +02:00
9503d885a8
gnu: r-gdina: Update to 2.9.4.
...
* gnu/packages/cran.scm (r-gdina): Update to 2.9.4.
2023-07-12 14:29:06 +02:00
ae0384d46a
gnu: r-r-huge: Update to 0.10.0.
...
* gnu/packages/cran.scm (r-r-huge): Update to 0.10.0.
2023-07-12 14:29:06 +02:00
53dbbb1aa8
gnu: r-mda: Update to 0.5-4.
...
* gnu/packages/cran.scm (r-mda): Update to 0.5-4.
2023-07-12 14:29:06 +02:00
8308f9ee39
gnu: r-pmcmrplus: Update to 1.9.7.
...
* gnu/packages/cran.scm (r-pmcmrplus): Update to 1.9.7.
[native-inputs]: Add r-rmarkdown.
2023-07-12 14:29:06 +02:00
ce0d2221ee
gnu: r-desolve: Update to 1.36.
...
* gnu/packages/cran.scm (r-desolve): Update to 1.36.
2023-07-12 14:29:06 +02:00
bf7388bcb2
gnu: r-uwot: Update to 0.1.16.
...
* gnu/packages/cran.scm (r-uwot): Update to 0.1.16.
2023-07-12 14:29:06 +02:00
b13c386550
gnu: r-styler: Update to 1.10.1.
...
* gnu/packages/cran.scm (r-styler): Update to 1.10.1.
2023-07-12 14:29:06 +02:00
177339b8b4
gnu: r-arrow: Update to 12.0.1.
...
* gnu/packages/cran.scm (r-arrow): Update to 12.0.1.
2023-07-12 14:29:06 +02:00
f0cc272cdb
gnu: r-ggfun: Update to 0.1.1.
...
* gnu/packages/cran.scm (r-ggfun): Update to 0.1.1.
2023-07-12 14:29:06 +02:00
78a7979cdb
gnu: r-ggplotify: Update to 0.1.1.
...
* gnu/packages/cran.scm (r-ggplotify): Update to 0.1.1.
2023-07-12 14:29:06 +02:00
5286885510
gnu: r-polspline: Update to 1.1.23.
...
* gnu/packages/cran.scm (r-polspline): Update to 1.1.23.
2023-07-12 14:29:06 +02:00
3d677f4bc1
gnu: r-spdata: Update to 2.3.0.
...
* gnu/packages/cran.scm (r-spdata): Update to 2.3.0.
2023-07-12 14:29:06 +02:00
473142bc5e
gnu: r-remacor: Update to 0.0.16.
...
* gnu/packages/cran.scm (r-remacor): Update to 0.0.16.
[propagated-inputs]: Remove r-clustergeneration and r-runit; add r-envstats, r-rcpp, and
r-rcpparmadillo.
2023-07-12 14:29:05 +02:00
c0273b86d7
gnu: r-future: Update to 1.33.0.
...
* gnu/packages/cran.scm (r-future): Update to 1.33.0.
2023-07-12 14:29:05 +02:00
d459606e51
gnu: r-gargle: Update to 1.5.1.
...
* gnu/packages/cran.scm (r-gargle): Update to 1.5.1.
2023-07-12 14:29:05 +02:00
f1ae6affed
gnu: r-kohonen: Update to 3.0.12.
...
* gnu/packages/cran.scm (r-kohonen): Update to 3.0.12.
2023-07-12 14:29:05 +02:00
e6802a6816
gnu: r-admisc: Update to 0.33.
...
* gnu/packages/cran.scm (r-admisc): Update to 0.33.
2023-07-12 14:29:05 +02:00
04e54c155d
gnu: r-biocmanager: Update to 1.30.21.
...
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.21.
2023-07-12 14:29:05 +02:00
7a331225a6
gnu: r-rcppannoy: Update to 0.0.21.
...
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.21.
2023-07-12 14:29:05 +02:00
6b8f69add4
gnu: r-usethis: Update to 2.2.2.
...
* gnu/packages/cran.scm (r-usethis): Update to 2.2.2.
2023-07-12 14:29:05 +02:00
c62608ab3a
gnu: r-ggeffects: Update to 1.2.3.
...
* gnu/packages/cran.scm (r-ggeffects): Update to 1.2.3.
2023-07-12 14:29:05 +02:00
cbc2b21497
gnu: r-emmeans: Update to 1.8.7.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.8.7.
2023-07-12 14:29:05 +02:00
2a3124d924
gnu: r-multcomp: Update to 1.4-25.
...
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-25.
2023-07-12 14:29:05 +02:00
e29a78dbcf
gnu: r-targets: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-targets): Update to 1.2.0.
2023-07-12 14:29:05 +02:00
acd42d0d39
gnu: r-tarchetypes: Update to 0.7.7.
...
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.7.
2023-07-12 14:29:05 +02:00
63319c1939
gnu: r-raster: Update to 3.6-23.
...
* gnu/packages/cran.scm (r-raster): Update to 3.6-23.
2023-07-12 14:29:05 +02:00
c16238380e
gnu: r-labelled: Update to 2.12.0.
...
* gnu/packages/cran.scm (r-labelled): Update to 2.12.0.
2023-07-12 14:29:04 +02:00
31eb88db4b
gnu: r-qualv: Update to 0.3-5.
...
* gnu/packages/cran.scm (r-qualv): Update to 0.3-5.
2023-07-12 14:29:04 +02:00
530a3023e0
gnu: r-proc: Update to 1.18.4.
...
* gnu/packages/cran.scm (r-proc): Update to 1.18.4.
2023-07-12 14:29:04 +02:00
41e722549a
gnu: r-golem: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-golem): Update to 0.4.1.
2023-07-12 14:29:04 +02:00
172aeabe36
gnu: r-flextable: Update to 0.9.2.
...
* gnu/packages/cran.scm (r-flextable): Update to 0.9.2.
2023-07-12 14:29:04 +02:00
94afe638da
gnu: r-insight: Update to 0.19.3.
...
* gnu/packages/cran.scm (r-insight): Update to 0.19.3.
2023-07-12 14:29:04 +02:00
3c08e4faff
gnu: r-reticulate: Update to 1.30.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.30.
[propagated-inputs]: Add r-rlang.
2023-07-12 14:29:04 +02:00
6b4689ced6
gnu: r-renv: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-renv): Update to 1.0.0.
2023-07-12 14:29:04 +02:00
b3983eb663
gnu: r-sitar: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-sitar): Update to 1.4.0.
2023-07-12 14:29:04 +02:00
230aa51bb8
gnu: r-cubature: Update to 2.1.0.
...
* gnu/packages/cran.scm (r-cubature): Update to 2.1.0.
2023-07-12 14:29:04 +02:00
d37077053e
gnu: r-quantmod: Update to 0.4.23.
...
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.23.
2023-07-12 14:29:04 +02:00
b3be4e8ea7
gnu: r-vctrs: Update to 0.6.3.
...
* gnu/packages/cran.scm (r-vctrs): Update to 0.6.3.
2023-07-12 14:29:04 +02:00
105b50bd47
gnu: r-webshot: Update to 0.5.5.
...
* gnu/packages/cran.scm (r-webshot): Update to 0.5.5.
2023-07-12 14:29:04 +02:00
579f31b517
gnu: r-processx: Update to 3.8.2.
...
* gnu/packages/cran.scm (r-processx): Update to 3.8.2.
2023-07-12 14:29:04 +02:00
e6fe82b26b
gnu: r-gss: Update to 2.2-5.
...
* gnu/packages/cran.scm (r-gss): Update to 2.2-5.
2023-07-12 14:29:04 +02:00
e261244e7f
gnu: r-mice: Update to 3.16.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.16.0.
[propagated-inputs]: Add r-glmnet, r-mitml, r-nnet, and r-rpart.
2023-07-12 14:29:04 +02:00
fde0293e71
gnu: r-pan: Update to 1.8.
...
* gnu/packages/cran.scm (r-pan): Update to 1.8.
2023-07-12 14:29:04 +02:00
66d6467f6c
gnu: r-broom: Update to 1.0.5.
...
* gnu/packages/cran.scm (r-broom): Update to 1.0.5.
2023-07-12 14:29:04 +02:00
40fb5a1f4c
gnu: r-psych: Update to 2.3.6.
...
* gnu/packages/cran.scm (r-psych): Update to 2.3.6.
2023-07-12 14:29:04 +02:00
64d4396288
gnu: r-emdbook: Update to 1.3.13.
...
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.13.
2023-07-12 14:29:04 +02:00
2ba310e2af
gnu: r-sp: Update to 2.0-0.
...
* gnu/packages/cran.scm (r-sp): Update to 2.0-0.
2023-07-12 14:29:04 +02:00
551e46d290
gnu: r-ctrdata: Update to 1.13.3.
...
* gnu/packages/cran.scm (r-ctrdata): Update to 1.13.3.
2023-07-12 14:29:04 +02:00
96e895f6ea
gnu: r-rcppthread: Update to 2.1.5.
...
* gnu/packages/cran.scm (r-rcppthread): Update to 2.1.5.
[native-inputs]: Add r-r-rsp.
2023-07-12 14:29:04 +02:00
5f609dc440
gnu: r-rcppspdlog: Update to 0.0.13.
...
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.13.
2023-07-12 14:29:04 +02:00
b4c0815613
gnu: r-rcpp: Update to 1.0.11.
...
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.11.
2023-07-12 14:29:03 +02:00
2481363f9f
gnu: r-pkgload: Update to 1.3.2.1.
...
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.2.1.
2023-07-12 14:29:03 +02:00
f40b72c9c1
gnu: r-pkgbuild: Update to 1.4.2.
...
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.4.2.
[propagated-inputs]: Remove r-withr.
2023-07-12 14:29:03 +02:00
27173e7545
gnu: r-ggtern: Update to 3.4.2.
...
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.2.
2023-07-12 14:29:03 +02:00
e7e8ef4c4c
gnu: r-fastdummies: Update to 1.7.3.
...
* gnu/packages/cran.scm (r-fastdummies): Update to 1.7.3.
2023-07-12 14:29:03 +02:00
90af9e7b2d
gnu: r-curl: Update to 5.0.1.
...
* gnu/packages/cran.scm (r-curl): Update to 5.0.1.
2023-07-12 14:29:03 +02:00
3f24044d91
gnu: r-jsonlite: Update to 1.8.7.
...
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.7.
[native-inputs]: Add r-r-rsp.
2023-07-12 14:29:03 +02:00
a71b693379
gnu: r-readxl: Update to 1.4.3.
...
* gnu/packages/cran.scm (r-readxl): Update to 1.4.3.
2023-07-12 14:29:03 +02:00
be7139e592
gnu: r-ecp: Update to 3.1.5.
...
* gnu/packages/cran.scm (r-ecp): Update to 3.1.5.
2023-07-12 14:29:03 +02:00
00db622370
gnu: r-ggpmisc: Update to 0.5.3.
...
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.3.
2023-07-12 14:29:03 +02:00
8825d76885
gnu: r-googlesheets4: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.1.1.
2023-07-12 14:29:03 +02:00
44e149cfaa
gnu: r-googledrive: Update to 2.1.1.
...
* gnu/packages/cran.scm (r-googledrive): Update to 2.1.1.
2023-07-12 14:29:03 +02:00
1d6792cf83
gnu: r-datawizard: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-datawizard): Update to 0.8.0.
2023-07-12 14:29:03 +02:00
bb570c1534
gnu: r-ggpicrust2: Update to 1.7.1.
...
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.1.
[propagated-inputs]: Remove r-phyloseq; add r-ggh4x.
2023-07-12 14:29:03 +02:00
d669b30658
gnu: r-scistreer: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-scistreer): Update to 1.2.0.
2023-07-12 14:29:03 +02:00
5f8104b3a4
gnu: r-numbat: Update to 1.3.2-1.
...
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.2-1.
2023-07-12 14:29:03 +02:00
347e3b1b75
gnu: r-biomartr: Update to 1.0.4.
...
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.4.
2023-07-12 14:29:03 +02:00
49fe6b3d66
gnu: apache-arrow: Update to 12.0.1.
...
* gnu/packages/databases.scm (apache-arrow): Update to 12.0.1.
2023-07-12 14:29:03 +02:00
abd0c1b29d
gnu: r-mlr3: Update to 0.16.1.
...
* gnu/packages/cran.scm (r-mlr3): Update to 0.16.1.
2023-07-12 14:29:02 +02:00
66e988201d
gnu: r-igraph: Update to 1.5.0.
...
* gnu/packages/cran.scm (r-igraph): Update to 1.5.0.
[propagated-inputs]: Add r-cli.
2023-07-12 14:29:02 +02:00
56b8a26951
gnu: r-terra: Update to 1.7-39.
...
* gnu/packages/cran.scm (r-terra): Update to 1.7-39.
[inputs]: Add curl, openssh, openssl, and pcre2.
2023-07-12 14:29:02 +02:00
5dea2079b1
gnu: r-leidenalg: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-leidenalg): Update to 1.1.0.
[properties]: Add hint for updater to keep gmp as input.
2023-07-12 14:29:02 +02:00
5aca0cd1e3
gnu: Add r-envstats.
...
* gnu/packages/cran.scm (r-envstats): New variable.
2023-07-12 14:29:02 +02:00
64b18f3282
gnu: r-gmp: Update to 0.7-2.
...
* gnu/packages/cran.scm (r-gmp): Update to 0.7-2.
[arguments]: Remove obsolete build phase.
[properties]: Tell updater that "gmp" is an extra input.
2023-07-12 14:29:02 +02:00
2c04ca3de0
gnu: r-haven: Update to 2.5.3.
...
* gnu/packages/cran.scm (r-haven): Update to 2.5.3.
[properties]: Declare readstat as an extra input.
[native-inputs]: Add pkg-config.
2023-07-12 14:29:02 +02:00
95a4fc7e9c
gnu: r-gprofiler2: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-gprofiler2): Update to 0.2.2.
[native-inputs]: Add r-rmarkdown.
2023-07-12 14:29:02 +02:00
1223a87a14
gnu: r-v8: Update to 4.3.2.
...
* gnu/packages/cran.scm (r-v8): Update to 4.3.2.
[properties]: Declare libnode as an extra input, not an ignored input.
2023-07-12 14:29:02 +02:00
1b09d2e9ae
gnu: r-lme4: Update to 1.1-34.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-34.
2023-07-12 14:29:02 +02:00
138d0dd9ad
gnu: r-digest: Update to 0.6.33.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.33.
[native-inputs]: Add r-simplermarkdown.
2023-07-12 14:29:02 +02:00
60c70a9009
gnu: r-plotly: Update to 4.10.2.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.10.2.
2023-07-12 14:29:02 +02:00
7c2290f663
gnu: r-opencpu: Update to 2.2.10.
...
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.10.
[properties]: Add hints for updater.
2023-07-12 14:29:02 +02:00
cca7d7ea4c
gnu: r-rgl: Update to 1.2.1.
...
* gnu/packages/cran.scm (r-rgl): Update to 1.2.1.
[properties]: Tell updater to not remove glu and libx11.
2023-07-12 14:29:01 +02:00
2680ec55ff
gnu: r-bslib: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-bslib): Update to 0.5.0.
[source]: Delete minified JavaScript for components.
[arguments]: Update 'process-javascript phase to generate components from
source.
[native-inputs]: Add typescript-components.
2023-07-12 14:29:01 +02:00
4a027d2b0e
gnu: rr: Fix typo in synopsis.
...
* gnu/packages/debug.scm (rr)
[synopsis]: Fix typo.
2023-07-11 22:43:35 -05:00
cf3bd63b06
gnu: keepassxc: Fix broken home-page url.
...
* gnu/packages/password-utils.scm (keepassxc): Fix broken url.
[home-page]: Fix broken url.
2023-07-11 22:43:05 -05:00
b5baa98053
gnu: nix: Update to 2.16.1.
...
* gnu/packages/package-management.scm (nix): Update to 2.16.1.
[source]: Use HTTPS for package source.
[inputs]: Add nlohmann-json.
[native-inputs]: Add rapidcheck.
[arguments]<#:phases>: In phase "check", change the value of environment
variable "NIX_STORE" to "/nix/store" temporarily.
* gnu/packages/patches/nix-dont-build-html-doc.diff: Update.
Co-authored-by: jgart <jgart@dismail.de>
2023-07-11 22:28:52 -05:00
38f050193b
gnu: Add rapidcheck.
...
* gnu/packages/check.scm (rapidcheck): New variable.
2023-07-11 21:39:35 -05:00
b073fb9896
gnu: Add python-redo.
...
* gnu/packages/python-xyz.scm (python-redo): New variable.
2023-07-11 21:39:27 -05:00
64b720e65e
gnu: Add python-cloup.
...
* gnu/packages/python-xyz.scm (python-cloup): New variable.
Co-authored-by: jgart <jgart@dismail.de>
2023-07-11 20:33:15 -05:00
15f9870eb3
gnu: rocm: Update to 5.6.0.
...
Update all of the ROCm packages at the same time as they share a version
number and should be upgraded together, including llvm-for-rocm.
* gnu/packages/llvm.scm (llvm-for-rocm): Update to 5.6.0.
[source]{patches}: Remove unneeded patches (linkdl and remove-isystem-usr-include).
* gnu/packages/rocm.scm (rocm-cmake, roct-thunk-interface): Update
to 5.6.0.
(rocclr-src): Update to 5.6.0.
[source]{patches}: Add enable-gfx800 patch.
(rocm-device-libs): Update to 5.6.0.
[inputs]: Update style.
(rocm-comgr): Update to 5.6.0.
[inputs]: Remove lld. Update style.
(rocr-runtime): Update to 5.6.0.
[arguments]: Use gexps. Remove configure-flags. Add add-rocm-device-lib-path
phase.
[inputs]: Add libdrm. Update style.
[native-inputs]: Add pkg-config. Update style.
(rocm-opencl-runtime): Update to 5.6.0.
[source]{patches}: Remove noopencl patch.
[arguments]{configure-flags}: Add BUILD_ICD=OFF and
FILE_REORG_BACKWARD_COMPATIBILITY=OFF flags.
[inputs]: Add opencl-headers.
(rocminfo): Update to 5.6.0.
[arguments]: Use gexps. Use search-input-file instead of assoc-ref and which.
(rocm-bandwidth-test): Update to 5.6.0.
[source]{patches}: Add fix-includes patch.
* gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch: Update patches.
* gnu/packages/patches/llvm-roc-4.0.0-remove-isystem-usr-include.patch,
gnu/packages/patches/llvm-roc-5.0.0-linkdl.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: Delete files.
* gnu/packages/patches/rocm-bandwidth-test-5.5.0-fix-includes.patch,
gnu/packages/patches/rocclr-5.6.0-enable-gfx800.patch: New files.
* gnu/local.mk (dist_patch_DATA): Update patches.
2023-07-11 12:21:00 -04:00
0cce3ac36e
gnu: Add emacs-sakura-theme.
...
* gnu/packages/emacs-xyz.scm (emacs-sakura-theme): New variable.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:12 +04:00
ebaeeacc84
gnu: Add emacs-abyss-theme.
...
* gnu/packages/emacs-xyz.scm (emacs-abyss-theme): New variable.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:11 +04:00
3b77a06f3b
gnu: Add emacs-starlit-theme.
...
* gnu/packages/emacs-xyz.scm (emacs-starlit-theme): New variable.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:10 +04:00
686a3ca7c5
gnu: emacs-dumbparens: Update to 0-1.59bb5ae.
...
* gnu/packages/emacs-xyz.scm (emacs-dumbparens): Update to 0-1.59bb5ae.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:09 +04:00
355391419b
gnu: emacs-scroll-on-drag: Update to 0.1-2.179c2ac.
...
* gnu/packages/emacs-xyz.scm (emacs-scroll-on-drag): Update to 0.1-2.179c2ac.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:08 +04:00
7c6237ccbb
gnu: emacs-mode-line-idle: Update to 0.2-0.1dc0115.
...
* gnu/packages/emacs-xyz.scm (emacs-mode-line-idle): Update to 0.2-0.1dc0115.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:07 +04:00
e7d554c8ad
gnu: emacs-undo-fu-session: Update to 0.6-0.a6c4f73.
...
* gnu/packages/emacs-xyz.scm (emacs-undo-fu-session): Update to 0.6-0.a6c4f73.
[source]: Download from new upstream URL.
[arguments]: Update #:test-command. Fix tests by adding
'--eval (setq undo-fu-session-ignore-temp-files nil)' to #:test-command.
[home-page]: Use new home-page.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:06 +04:00
9a214850f0
gnu: emacs-undo-fu: Update to 0.5-0.0e22308.
...
* gnu/packages/emacs-xyz.scm (emacs-undo-fu): Update to 0.5-0.0e22308.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:05 +04:00
507d2648c1
gnu: emacs-spell-fu: Update to 0.3-1.67a26b7.
...
* gnu/packages/emacs-xyz.scm (emacs-spell-fu): Update to 0.3-1.67a26b7.
[source]: Download from new upstream URL.
[home-page]: Use new home-page.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11 20:06:04 +04:00
7858b74b77
gnu: gnuplot: Update to 5.4.8.
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* gnu/packages/maths.scm (gnuplot): Update to 5.4.8.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:58:04 +02:00
7761495ccb
gnu: gmsh: Update to 4.11.1.
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* gnu/packages/maths.scm (gmsh): Update to 4.11.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:15:01 +02:00
fc25bd72b2
gnu: desktop-file-utils: Format description.
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* gnu/packages/freedesktop.scm (desktop-file-utils)[description]: Format
description.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:12:25 +02:00
e12a0cb3db
gnu: guile-hashing: Fix description.
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* gnu/packages/guile-xyz.scm (guile-hashing)[description]: Fix typo.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:12:23 +02:00
355e3c6e1c
gnu: rxvt-unicode: Use helper procedure to make desktop files.
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* gnu/packages/xdisorg.scm (rxvt-unicode)[arguments]: Replace custom code with
make-desktop-entry-file. Specify categories and icon in desktop files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:06:52 +02:00
f969f45fa8
gnu: rxvt-unicode: Use new package style.
...
* gnu/packages/xdisorg.scm (rxvt-unicode)[arguments]: Use gexps.
[inputs]: Drop input labels.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:06:51 +02:00
f0dfb2a8e9
gnu: rxvt-unicode: Update to 9.31 [fixes CVE-2022-4170].
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* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.31.
[inputs]: Add libxext.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:06:49 +02:00
09d1e04230
gnu: qbittorrent{,-nox}: Use qt-build-system.
...
CMake is now upstream’s preferred build system.
* gnu/packages/bittorrent.scm (qbittorrent)[build-system]: Use qt-build-system.
[arguments]: Drop custom wrap phase. (Re-)enable tests.
[inputs]: Remove input labels. Drop qtbase-5.
[native-inputs]: Drop pkg-config.
(qbittorrent-nox)[arguments]: Adjust configure-flags. Keep the wrap-qt phase
since the non-GUI version is also a QT program.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:05:50 +02:00
f561e8a0ed
gnu: qbittorrent: Update to 4.5.4.
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* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.5.4.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:05:48 +02:00
b716d17e1c
gnu: mit-scheme: Fix building
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* gnu/packages/scheme.scm (mit-scheme)[arguments] Add 'set-env
before 'configure, setting -Wno-array-parameter in CFLAGS and
CPPFLAGS to ignore warning causing build break.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 16:04:44 +02:00
b27d3265c6
gnu: xorriso: Update to 1.5.6.pl02
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* gnu/packages/cdrom.scm (xorriso): Update to 1.5.6.pl02
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 15:53:26 +02:00
fa7d3972f8
gnu: hwloc: Update to 2.9.2.
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* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 15:52:26 +02:00
16c5c7c5c1
gnu: guile-chickadee: Change license to Apache 2.0.
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* gnu/packages/game-development.scm (guile-chickadee)[license]: Change to
Apache 2.0 (asl2.0).
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11 15:47:56 +02:00
7d9fdfb19d
home: services: bash: Properly quote shell aliases.
...
Fixes <https://issues.guix.gnu.org/63048 >.
Reported by Ekaitz Zarraga <ekaitz@elenq.tech>.
* gnu/home/services.scm (with-shell-quotation-bindings): New procedure.
(environment-variable-shell-definitions): Use it instead of inline copy.
* gnu/home/services/shells.scm (bash-serialize-aliases): Use it. Add
clause for 'literal-string?'.
* tests/guix-home.sh: Add 'aliases' to 'home-bash-extension' and test it.
2023-07-11 15:47:56 +02:00
67e22584fa
gnu: icedove: Update to 102.13.0.
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* gnu/packages/gnuzilla.scm (icedove): Update to 102.13.0.
2023-07-10 21:08:29 +02:00
4a508a628f
gnu: opustags: Update to 1.9.0.
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* gnu/packages/music.scm (opustags): Update to 1.9.0.
[native-inputs]: Add perl-test-deep.
[arguments]: Adjust accordingly.
2023-07-10 13:42:57 -04:00
a37d2e9187
gnu: pari-gp: Update to 2.15.4.
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* gnu/packages/algebra.scm (pari-gp): Update to 2.15.4.
2023-07-10 19:32:45 +02:00
ef0a45c641
gnu: openrgb: Update to 0.9.
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* gnu/packages/hardware.scm (openrgb): Update to 0.9.
* gnu/packages/patches/openrgb-unbundle-hueplusplus.patch: Update.
2023-07-10 11:21:31 -04:00
b7be0a999d
gnu: bpython: Update to 0.24.
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* gnu/packages/python-xyz.scm (bpython): Update to 0.24.
[propagated-inputs]: Remove python-six.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-07-10 12:39:35 +01:00
6d2ca5dd04
gnu: python-curtsies: Update to 0.4.1.
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* gnu/packages/terminals.scm (python-curtsies): Update to 0.4.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-07-10 12:39:35 +01:00
95af7f7c9b
gnu: python-blessed: Add missing dependency.
...
Fixes the build of python-curtsies.
The python-six dependency was accidentally removed in commit
9e1cbc62e5
2023-07-10 12:39:35 +01:00
81a2a0f8d1
gnu: ruby-hamster: Fix build.
...
* gnu/packages/ruby.scm (ruby-hamster)[arguments]: Run tests with ruby-2.7 and
update style.
2023-07-10 12:39:35 +01:00
fd2a01d564
gnu: ruby-terraform: Update to 1.7.0.
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* gnu/packages/ruby.scm (ruby-terraform): Update to 1.7.0.
[source]: Use git-fetch.
[arguments]: Enable tests.
[native-inputs]: Add ruby-rspec, ruby-faker, ruby-simplecov.
[propagated-inputs]: Add ruby-immutable-struct.
2023-07-10 12:39:35 +01:00
0a6f2b8f31
gnu: Add ruby-faker.
...
* gnu/packages/ruby.scm (ruby-faker): New variable.
2023-07-10 12:39:35 +01:00
8509e977b4
gnu: Add ruby-immutable-struct.
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* gnu/packages/ruby.scm (ruby-immutable-struct): New variable.
2023-07-10 12:39:35 +01:00
79bbf07ecc
gnu: ruby-lino: Update to 3.1.0.
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* gnu/packages/ruby.scm (ruby-lino): Update to 3.1.0.
2023-07-10 12:39:35 +01:00
ab34f9af29
gnu: ruby-i18n: Update to 1.13.0.
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* gnu/packages/ruby.scm (ruby-i18n): Update to 1.13.0.
2023-07-10 12:39:35 +01:00
83444f2940
gnu: ruby-net-ssh: Update to 7.1.0.
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* gnu/packages/ruby.scm (ruby-net-ssh): Update to 7.1.0.
[source]: Switch to git-fetch for tests.
[native-inputs]: Add ruby-bcrypt-pbkdf, ruby-ed25519, ruby-rbnacl, and
ruby-x25519 for tests with optional dependencies.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-07-10 12:39:35 +01:00
5a59f77e76
gnu: Add ruby-x25519.
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* gnu/packages/ruby.scm (ruby-x25519): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-07-10 12:39:34 +01:00
f6e6d5981f
gnu: ruby-rbnacl: Use new package style.
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* gnu/packages/ruby.scm (ruby-rbnacl): Use new package style.
[arguments]: Use gexp.
[source, propagated-inputs, inputs, native-inputs]: Restyle format.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-07-10 12:39:34 +01:00
98eaf21d4a
gnu: ruby-rbnacl: Update to 7.1.1.
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* gnu/packages/ruby.scm (ruby-rbnacl): Update to 7.1.1.
[home-page]: Update to current home page link.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-07-10 12:39:34 +01:00
6a4ae3528f
gnu: Add ruby-ed25519.
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* gnu/packages/ruby.scm (ruby-ed25519): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-07-10 12:39:34 +01:00
40bac1a557
gnu: Add ruby-bcrypt-pbkdf.
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* gnu/packages/ruby.scm (ruby-bcrypt-pbkdf): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-07-10 12:39:34 +01:00
d0296970fb
gnu: Add python-captum.
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* gnu/packages/machine-learning.scm (python-captum): New variable.
2023-07-10 13:13:45 +02:00
e3d9d896b5
gnu: Add python-flask-seasurf.
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* gnu/packages/python-web.scm (python-flask-seasurf): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-07-10 13:13:45 +02:00
4181835a52
gnu: Add python-flask-compress.
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* gnu/packages/python-web.scm (python-flask-compress): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-07-10 13:13:45 +02:00
8b38d180ec
gnu: ndisc6: Update to 1.0.7.
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* gnu/packages/networking.scm (ndisc6): Update to 1.0.7.
2023-07-09 02:00:01 +02:00
5ac5d7c86a
gnu: bpftrace: Update to 0.18.0.
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* gnu/packages/linux.scm (bpftrace): Update to 0.18.0.
2023-07-09 02:00:01 +02:00
Tobias Geerinckx-Rice
John Kehayias
Philip McGrath
Christopher Baines
Efraim Flashner
Leo Famulari
Ricardo Wurmus
Janneke Nieuwenhuizen
Josselin Poiret
Ludovic Courtès
Timotej Lazar
Tobias Kortkamp
fanquake
Andre A. Gomes
jgart
Zhu Zihao
AwesomeAdam54321
Daniel Meißner
Ahmad Draidi
Paul A. Patience
Bruno Victal
Zac Berkowitz
Andy Tai
Philippe SWARTVAGHER
Morgan Smith
Jonathan Brielmaier
Andreas Enge
Yovan Naumovski via Guix-patches via
gemmaro
kiasoc5