88e3a3529f
gnu: linsmith: Update to 0.99.33.
...
* gnu/packages/engineering.scm (linsmith): Update to 0.99.33.
2023-07-16 02:00:09 +02:00
05b242a9ad
gnu: emacs-svg-lib: Update to 0.2.6.
...
* gnu/packages/emacs-xyz.scm (emacs-svg-lib): Update to 0.2.6.
2023-07-16 02:00:09 +02:00
77f43211f1
gnu: emacs-plz: Update to 0.7.
...
* gnu/packages/emacs-xyz.scm (emacs-plz): Update to 0.7.
2023-07-16 02:00:08 +02:00
c4c925a069
gnu: emacs-ebuild-mode: Update to 1.65.
...
* gnu/packages/emacs-xyz.scm (emacs-ebuild-mode): Update to 1.65.
2023-07-16 02:00:15 +02:00
4eee59ef34
gnu: xchm: Update to 1.35.
...
* gnu/packages/ebook.scm (xchm): Update to 1.35.
2023-07-16 02:00:15 +02:00
6dbcdb4b7f
gnu: thermald: Update to 2.5.3.
...
* gnu/packages/admin.scm (thermald): Update to 2.5.3.
2023-07-16 02:00:15 +02:00
aff442508b
gnu: sudo: Update to 1.9.14p1.
...
* gnu/packages/admin.scm (sudo): Update to 1.9.14p1.
[arguments]: Use a different filthy hack to quote _PATH_MV.
2023-07-16 02:00:15 +02:00
460a555ee7
gnu: s-tui: Update to 1.1.4.
...
* gnu/packages/admin.scm (s-tui): Update to 1.1.4.
2023-07-16 02:00:15 +02:00
7a415ef535
gnu: inxi-minimal: Update to 3.3.28-1.
...
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.28-1.
2023-07-16 02:00:14 +02:00
d63a3c68fc
gnu: jc: Update to 1.23.3.
...
* gnu/packages/admin.scm (jc): Update to 1.23.3.
2023-07-16 02:00:14 +02:00
08e2a497be
gnu: stress: Update to 1.0.7.
...
* gnu/packages/admin.scm (stress): Update to 1.0.7.
2023-07-16 02:00:14 +02:00
a81e46dbe5
gnu: zchunk: Remove input labels.
...
* gnu/packages/compression.scm (zchunk)[propagated-inputs]:
Remove input labels.
2023-07-16 02:00:14 +02:00
3135d2cbfb
gnu: zchunk: Use G-expressions.
...
* gnu/packages/compression.scm (zchunk)[arguments]:
Rewrite as G-expressions. Use SEARCH-INPUT-FILE.
2023-07-16 02:00:14 +02:00
a22a6c4ce5
gnu: zchunk: Update to 1.3.1.
...
* gnu/packages/compression.scm (zchunk): Update to 1.3.1.
2023-07-16 02:00:14 +02:00
2a1c1a108d
gnu: epson-inkjet-printer-escpr: Document missing newer tarballs.
...
* gnu/packages/cups.scm (epson-inkjet-printer-escpr)[source]:
Add more bad news to comment.
2023-07-16 02:00:14 +02:00
57fe5b2338
gnu: hplip: Update to 3.23.5.
...
* gnu/packages/cups.scm (hplip): Update to 3.23.5.
2023-07-16 02:00:13 +02:00
c859bfe633
gnu: xarchiver: Update to 0.5.4.21.
...
* gnu/packages/compression.scm (xarchiver): Update to 0.5.4.21.
2023-07-16 02:16:37 +02:00
05b8222096
gnu: zutils: Use G-expressions.
...
* gnu/packages/compression.scm (zutils)[arguments]:
Rewrite as G-expressions.
2023-07-16 02:16:37 +02:00
46713e5220
gnu: zutils: Update to 1.12.
...
* gnu/packages/compression.scm (zutils): Update to 1.12.
[arguments]: Remove obsolete 'disable-failing-tests phase.
2023-07-16 02:16:37 +02:00
f1b546af68
gnu: libisofs: Update to 1.5.6.pl01.
...
* gnu/packages/cdrom.scm (libisofs): Update to 1.5.6.pl01.
2023-07-16 02:16:37 +02:00
72bd1abaee
gnu: libburn: Update to 1.5.6.
...
* gnu/packages/cdrom.scm (libburn): Update to 1.5.6.
2023-07-16 02:16:37 +02:00
0393495c16
gnu: unbound: Update to 1.17.1.
...
* gnu/packages/dns.scm (unbound): Update to 1.17.1.
[arguments]: Don't explicitly return #t from phases.
2023-07-16 02:16:36 +02:00
f7c3a2a86e
gnu: ddcutil: Update to 1.4.2.
...
* gnu/packages/hardware.scm (ddcutil): Update to 1.4.2.
2023-07-16 02:16:36 +02:00
ba9fdaa814
gnu: diffoscope: Don't embed build-time references.
...
* gnu/packages/diffoscope.scm (diffoscope)[arguments]:
Avoid using WHICH in the 'embed-tool-references phase.
2023-07-16 02:00:11 +02:00
aeb6cdacbc
gnu: diffoscope: Use G-expressions.
...
* gnu/packages/diffoscope.scm (diffoscope)[arguments]:
Rewrite as G-expressions.
2023-07-16 02:00:10 +02:00
2db3fa4a76
gnu: diffoscope: Update to 244.
...
* gnu/packages/diffoscope.scm (diffoscope): Update to 244.
2023-07-16 02:00:10 +02:00
62bd53dbb9
gnu: sdcv: Update to 0.5.5.
...
* gnu/packages/dictionaries.scm (sdcv): Update to 0.5.5.
[arguments]: ...don't we? Remove the 'remove-jq-requirement phase.
[native-inputs]: Add jq.
2023-07-16 02:00:10 +02:00
b499be6e20
gnu: xandikos: Update to 0.2.8.
...
* gnu/packages/dav.scm (xandikos): Update to 0.2.8.
2023-07-16 02:00:10 +02:00
ae8a4de141
gnu: virtuoso-ose: Use G-expressions.
...
* gnu/packages/databases.scm (virtuoso-ose)[arguments]:
Rewrite as G-expressions.
2023-07-16 02:00:10 +02:00
560e61e5eb
gnu: virtuoso-ose: Update to 7.2.10.
...
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.10.
2023-07-16 02:00:10 +02:00
25e4acb84e
gnu: vdirsyncer: Use G-expressions.
...
* gnu/packages/dav.scm (vdirsyncer)[arguments]:
Rewrite as G-expressions.
2023-07-16 02:00:09 +02:00
a4a47b49c8
gnu: vdirsyncer: Update to 0.19.2.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.19.2.
2023-07-16 02:00:09 +02:00
6c67d3b026
gnu: redis: Update to 7.0.12.
...
* gnu/packages/databases.scm (redis): Update to 7.0.12.
[arguments]: Ever so slightly tweak style.
2023-07-16 02:00:01 +02:00
4d87d98aee
gnu: redis: Fetch over HTTPS.
...
* gnu/packages/databases.scm (redis)[source]: Use HTTPS.
2023-07-16 02:00:01 +02:00
416927772d
gnu: trurl: Improve description.
...
* gnu/packages/curl.scm (trurl)[synopsis]: Fix typo.
[description]: Reorder & tighten.
2023-07-16 02:00:01 +02:00
a08d0b0baf
gnu: trurl: Update to 0.8.
...
* gnu/packages/curl.scm (trurl): Update to 0.8.
2023-07-16 02:00:00 +02:00
ad457d0114
gnu: r-experimenthub: Update to 2.8.1.
...
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.1.
2023-07-17 14:55:08 +02:00
22db2a63fe
gnu: r-flowcore: Update to 2.12.1.
...
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.1.
2023-07-17 14:55:08 +02:00
2b5b595708
gnu: r-clusterprofiler: Update to 4.8.2.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.2.
2023-07-17 14:55:08 +02:00
79b508e3f6
gnu: r-gosemsim: Update to 2.26.1.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.26.1.
2023-07-17 14:55:07 +02:00
d29a060d20
gnu: r-icobra: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.28.1.
2023-07-17 14:55:07 +02:00
d1979fe4bb
gnu: r-treeio: Update to 1.24.2.
...
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.2.
2023-07-17 14:55:07 +02:00
6f9894d63c
gnu: r-affycomp: Update to 1.76.1.
...
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.1.
2023-07-17 14:55:07 +02:00
ed58e991f5
gnu: r-puniform: Update to 0.2.6.
...
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.6.
2023-07-17 14:19:54 +02:00
a450a5aafa
gnu: r-clubsandwich: Update to 0.5.9.
...
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.9.
2023-07-17 14:19:54 +02:00
7d6bdd1c8a
gnu: r-matrixmodels: Update to 0.5-2.
...
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-2.
2023-07-17 14:19:54 +02:00
b5fede2809
gnu: r-deoptimr: Update to 1.1-0.
...
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-0.
2023-07-17 14:19:54 +02:00
f96c109be9
gnu: r-mgcv: Update to 1.9-0.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-0.
2023-07-17 14:19:53 +02:00
8029b180bd
gnu: r-ggh4x: Update to 0.2.5.
...
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.5.
2023-07-17 14:19:53 +02:00
a28d88e847
gnu: r-stars: Update to 0.6-2.
...
* gnu/packages/cran.scm (r-stars): Update to 0.6-2.
2023-07-17 14:19:53 +02:00
f702efa97e
gnu: r-seewave: Update to 2.2.1.
...
* gnu/packages/cran.scm (r-seewave): Update to 2.2.1.
2023-07-17 14:19:53 +02:00
4a6843b3b3
gnu: r-sccore: Update to 1.0.4.
...
* gnu/packages/cran.scm (r-sccore): Update to 1.0.4.
2023-07-17 14:19:53 +02:00
2824b8949d
gnu: r-sf: Update to 1.0-14.
...
* gnu/packages/cran.scm (r-sf): Update to 1.0-14.
[inputs]: Add curl, openssh, openssl, pcre2, and zlib.
2023-07-17 14:19:53 +02:00
fa0788a9b4
gnu: r-longdat: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-longdat): Update to 1.1.2.
2023-07-17 14:19:53 +02:00
b071105584
gnu: r-tidytree: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-tidytree): Update to 0.4.4.
2023-07-17 14:19:52 +02:00
2f5903c51a
gnu: r-rcppalgos: Update to 2.8.0.
...
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.8.0.
2023-07-17 14:19:52 +02:00
892f9dba8a
gnu: r-doby: Update to 4.6.17.
...
* gnu/packages/cran.scm (r-doby): Update to 4.6.17.
2023-07-17 14:19:52 +02:00
b23bfb6de5
gnu: r-ctrdata: Update to 1.14.0.
...
* gnu/packages/cran.scm (r-ctrdata): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.
2023-07-17 14:19:52 +02:00
a20818b3e8
gnu: r-rcppspdlog: Update to 0.0.14.
...
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.14.
2023-07-17 14:19:52 +02:00
ecb9e3e180
gnu: r-gensa: Update to 1.1.9.
...
* gnu/packages/cran.scm (r-gensa): Update to 1.1.9.
2023-07-17 14:19:52 +02:00
01be464993
gnu: r-sass: Update to 0.4.7.
...
* gnu/packages/cran.scm (r-sass): Update to 0.4.7.
2023-07-17 14:19:52 +02:00
8ed1249d65
gnu: r-ggpp: Update to 0.5.3.
...
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.3.
2023-07-17 14:19:51 +02:00
c30a4577a8
gnu: r-babelwhale: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-babelwhale): Update to 1.2.0.
2023-07-17 14:19:51 +02:00
af6b542954
gnu: r-openssl: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.0.
[properties]: Add hint to keep openssl input.
[inputs]: Add zlib.
2023-07-17 14:18:43 +02:00
ad08f9331f
gnu: simulation: Fix duplicate open-simulation-interface.
...
Give the python variant a different name, and fix the build.
* gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set.
[propagated-inputs]: Add python-pyyaml and python-protobuf.
2023-07-17 09:14:47 +01:00
22c7ac4109
gnu: gnome: Hide devhelp-with-libsoup2.
...
To avoid the ambiguous package specification.
* gnu/packages/gnome.scm (devhelp-with-libsoup2): Hide package.
2023-07-17 09:07:34 +01:00
54a74d35e6
gnu: Hide python-bcbio-gff/biopython-1.73.
...
To avoid the ambiguous package specification.
* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): Hide
package.
2023-07-17 09:06:34 +01:00
728ed83188
gnu: Remove harfbuzz-5.
...
As this package definition is redundant, harfbuzz is version 5.3.1.
* gnu/packages/gtk.scm (harfbuzz-5): Remove.
* gnu/packages/libreoffice.scm (libreoffice)[inputs]: Replace harfbuzz-5 with
harfbuzz.
* gnu/packages/qt.scm (qtwebengine)[inputs]: Remove redundant replace.
2023-07-17 09:05:03 +01:00
36cbd2654e
gnu: ghc-8.10: Fix build on i686-linux.
...
As one profiling test fails very repeatedly on the bordeaux build farm, but
ghc did seem to build successfully on other machines.
* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Don't run the T11627a
profiling test on i686-linux.
2023-07-17 08:47:10 +01:00
3755941f03
gnu: jbr: Use Jetbrains' configure-flags.
...
* gnu/packages/java.scm (jbr17)[arguments]<#:configure-flags>: Use Jetbrains'
configure flags.
2023-07-17 00:14:20 +02:00
796c823a0d
gnu: welle-io: Add missing input.
...
* gnu/packages/radio.scm (welle-io)[inputs]: Add qtquickcontrols-5.
2023-07-16 11:05:24 +02:00
e767fe2ddc
gnu: libnode: Delete extra phase.
...
This is a follow-up to commit 5dc2a88f99
2023-07-16 10:48:26 +02:00
8d2a016f1b
gnu: r-with-tests: Update to 4.3.1.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.1.
2023-07-16 10:48:00 +02:00
ff0d34a29b
gnu: r-with-tests: Fix reference to grep.
...
detectCores.R fails to return the number of cores when running R in a
container without grep.
Reported-by: Jonas Freimuth.
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Fix references to
grep and wc in detectCores.R.
[inputs]: Add grep.
2023-07-16 10:48:00 +02:00
093e920418
gnu: capypdf: Update to 0.4.0.
...
* gnu/packages/pdf.scm (capypdf): Update to 0.4.0.
2023-07-16 09:18:09 +02:00
45491ea8da
gnu: mesa: Fix Vulkan on older Intel GPUs.
...
Mesa split the Vulkan intel driver into two: intel and intel_hasvk.
Enables intel_hasvk so vulkan functions on older intel GPUs again, and
swrast for lavapipe as a fallback.
* gnu/packages/gl.scm (mesa-vulkan-hasvk): New variable.
(mesa): Graft with mesa-vulkan-hasvk.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-07-16 09:18:09 +02:00
1ef314fa58
gnu: Add emacs-weyland-yutani-theme.
...
* gnu/packages/emacs-xyz.scm (emacs-weyland-yutani-theme): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-07-16 09:18:09 +02:00
c6dad0178a
gnu: Add emacs-elfeed-goodies
...
* gnu/packages/emacs-xyz.scm (emacs-elfeed-goodies): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-07-16 09:18:09 +02:00
c8a6ec7963
gnu: Add emacs-popwin.
...
* gnu/packages/emacs-xyz.scm (emacs-popwin): new variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-07-16 09:18:08 +02:00
cb46336c40
gnu: Add python-ovh.
...
* gnu/packages/python-web.scm (python-ovh): New variable.
2023-07-16 07:58:51 +02:00
d08bd19de0
gnu: wimlib: Update to 1.14.1.
...
* gnu/packages/backup.scm (wimlib): Update to 1.14.1.
[inputs]: Upgrade fuse to fuse-3.
2023-07-09 02:00:10 +02:00
df6ea7416f
gnu: qpwgraph: Update to 0.4.5.
...
* gnu/packages/audio.scm (qpwgraph): Update to 0.4.5.
2023-07-09 02:00:10 +02:00
d00be57254
gnu: rdiff-backup: Update to 2.2.5.
...
* gnu/packages/backup.scm (rdiff-backup): Update to 2.2.5.
2023-07-09 02:00:09 +02:00
e286fe4a68
gnu: snapraid: Update to 12.2.
...
* gnu/packages/backup.scm (snapraid): Update to 12.2.
2023-07-09 02:00:09 +02:00
8b96a20ff3
gnu: oath-toolkit: Mark up description.
...
* gnu/packages/authentication.scm (oath-toolkit)[synopsis, description]:
Use @acronym{}.
2023-07-09 02:00:09 +02:00
aa576321f2
gnu: oath-toolkit: Update to 2.6.9.
...
* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.9.
[source]: Remove patch.
* gnu/packages/patches/oath-toolkit-xmlsec-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2023-07-09 02:00:09 +02:00
86aa9e23d8
gnu: stoken: Use HTTPS home page.
...
* gnu/packages/crypto.scm (stoken)[home-page]: Use HTTPS.
2023-07-09 02:00:09 +02:00
ab4f866902
gnu: Remove top-level (guix build utils) import.
...
* gnu/packages/game-development.scm: Don't import (guix build utils) here.
2023-07-09 02:00:09 +02:00
920d12624f
gnu: signify: Use G-expressions.
...
* gnu/packages/crypto.scm (signify)[arguments]:
Rewrite as G-expressions.
2023-07-09 02:00:09 +02:00
869d9bcf07
gnu: signify: Update to 31.
...
* gnu/packages/crypto.scm (signify): Update to 31.
2023-07-09 02:00:09 +02:00
bbce7b4ab8
gnu: libxcrypt: Update to 4.4.36.
...
* gnu/packages/crypto.scm (libxcrypt): Update to 4.4.36.
2023-07-09 02:00:09 +02:00
ef64cc509e
gnu: xtl: Use G-expressions.
...
* gnu/packages/cpp.scm (xtl)[arguments]:
Rewrite as G-expressions.
2023-07-09 02:00:09 +02:00
6e0c8f097b
gnu: xtl: Update to 0.7.5.
...
* gnu/packages/cpp.scm (xtl): Update to 0.7.5.
2023-07-09 02:00:09 +02:00
49f74b67a4
gnu: Add linux-libre 6.4
...
* gnu/packages/linux.scm (linux-libre-6.4-version, linux-libre-6.4-gnu-revision,
deblob-scripts-6.4, linux-libre-6.4-pristine-source, linux-libre-6.4-source,
linux-libre-headers-6.4, linux-libre-6.4: New variables.
* gnu/packages/aux-files/linux-libre/6.4-arm.conf,
* gnu/packages/aux-files/linux-libre/6.4-arm64.conf,
* gnu/packages/aux-files/linux-libre/6.4-i686.conf,
* gnu/packages/aux-files/linux-libre/6.4-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
2023-07-15 14:02:40 -04:00
01412c6c6a
gnu: python-distributed: Update to 2023.7.0.
...
* gnu/packages/python-science.scm (python-distributed): Update to 2023.7.0.
2023-07-15 13:36:02 +02:00
b592732d8b
gnu: python-dask: Update to 2023.7.0.
...
* gnu/packages/python-xyz.scm (python-dask): Update to 2023.7.0.
2023-07-15 13:20:24 +02:00
a065e12f82
gnu: r-pando: Relax requirements.
...
* gnu/packages/bioinformatics.scm (r-pando)[arguments]: Patch DESCRIPTION
file.
2023-07-15 11:11:02 +02:00
b5a5e4d712
gnu: cl-nhooks: Update to 1.2.1.
...
* gnu/packages/lisp-xyz.scm (sbcl-nhooks): Update to 1.2.1.
[native-inputs]: Remove sbcl-fiveam, add sbcl-lisp-unit2.
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-15 10:56:46 +02:00
5dc2a88f99
gnu: node-lts: Install files irrespective of number of hardlinks.
...
* gnu/packages/node.scm (node-lts)[arguments]: Add build phase
'ignore-number-of-hardlinks.
2023-07-15 10:01:58 +02:00
529d91de1e
gnu: node-lts: Simplify snippet.
...
* gnu/packages/node.scm (node-lts)[source]: Remove quasiquote, trailing #T,
and IF with explicit booleans.
2023-07-15 10:01:58 +02:00
00ed2901f5
gnu: cabal-install, ghc-cabal-syntax: Use HTTPS home page.
...
* gnu/packages/haskell-apps.scm (cabal-install)[home-page]: Use HTTPS.
* gnu/packages/haskell-xyz.scm (ghc-cabal-syntax)[home-page]: Likewise.
2023-07-09 02:00:17 +02:00
2195645725
gnu: bwa-pssm: Update home page.
...
* gnu/packages/bioinformatics.scm (bwa-pssm)[home-page]: Update.
2023-07-09 02:00:17 +02:00
de088be221
gnu: brdf-explorer: Mark up description.
...
* gnu/packages/graphics.scm (brdf-explorer)[synopsis, description]:
Use @acronym{}.
2023-07-09 02:00:10 +02:00
c848cd643c
gnu: brdf-explorer: Use Web Archived home page.
...
* gnu/packages/graphics.scm (brdf-explorer)[home-page]:
Refer to Web Archive.
2023-07-09 02:00:10 +02:00
6f80e25f35
gnu: blasr-libcpp, blasr: Use Web Archived home pages.
...
* gnu/packages/bioinformatics.scm (blasr-libcpp, blasr)[home-page]:
Refer to Web Archive.
2023-07-09 02:00:10 +02:00
a1ae54b10b
gnu: yadifa: Update to 2.6.4.
...
* gnu/packages/dns.scm (yadifa): Update to 2.6.4.
[arguments]: Add a new 'unhard-code phase.
2023-07-09 02:00:10 +02:00
1c347cd56a
gnu: knot: Use G-expressions.
...
* gnu/packages/dns.scm (knot)[arguments]:
Rewrite as G-expressions.
2023-07-09 02:00:10 +02:00
60bb22a9da
gnu: knot: Update to 3.2.8.
...
* gnu/packages/dns.scm (knot): Update to 3.2.8.
2023-07-09 02:00:09 +02:00
eaac211730
gnu: nsd: Use G-expressions.
...
* gnu/packages/dns.scm (nsd)[arguments]:
Rewrite as G-expressions.
2023-07-09 02:00:09 +02:00
626c0b7cd6
gnu: nsd: Update to 4.7.0.
...
* gnu/packages/dns.scm (nsd): Update to 4.7.0.
2023-07-09 02:00:09 +02:00
69c3a06a1c
gnu: btor2tools: Use HTTPS home page.
...
* gnu/packages/maths.scm (btor2tools)[home-page]: Use HTTPS.
2023-07-09 02:00:09 +02:00
86e95b2205
gnu: boolector: Use HTTPS home page.
...
* gnu/packages/maths.scm (boolector)[home-page]: Use HTTPS.
2023-07-09 02:00:01 +02:00
917a299831
gnu: python-yubikey-manager: Update to 5.1.1.
...
* gnu/packages/security-tokens.scm (python-yubikey-manager): Update to
5.1.1.
[source]: Update url.
[build-system]: Switch to pyproject-build-system.
[arguments]: Delete.
[propagated-inputs]: Remove python-six. Add python-keyring. Reorder alphabetically.
[native-inputs]: Remove python-mock. Add python-makefun, python-poetry-code and
python-pytest. Reorder alphabetically.
Co-authored-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14 12:16:39 -04:00
51de28452a
gnu: Add python-makefun.
...
* gnu/packages/python-xyz.scm (python-makefun): New variable.
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14 12:16:37 -04:00
66f0304e1d
gnu: python-fido2: Update to 1.1.1.
...
* gnu/packages/security-tokens.scm (python-fido2): Update to 1.1.1.
[build-system]: Switch to pyproject-build-system.
[arguments]: Enable tests. Use gexps in phases.
[propagated-inputs]: Remove python-six. Add python-pyscard.
[native-inputs]: Remove python-mock and python-pyfakefs. Add
python-poetry-core and python-pytest.
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14 12:16:31 -04:00
221806905b
gnu: python-pyscard: Update to 2.0.7.
...
* gnu/packages/security-token.scm (python-pyscard): Update to 2.0.7.
[arguments]{phases}: Use search-input-directory. Remove trailing #t.
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-07-14 12:13:34 -04:00
09e73683a2
gnu: godot: Update to 4.1. Rename godot@3 to godot-lts.
...
* gnu/packages/game-development.scm (godot): Update to 4.1.
[source]: Update snippet: remove embree and enet; add amd-fsr, astcenc,
basis_universal, brotli, linuxbsd_headers, etcpak, meshoptimizer, msdfgen,
noise, openxr, rvo2, spirv-reflect, thorvg, volk, vulkan.
[arguments]: Remove #:scons. Update #:scons-flags to unbundle more
libraries.
[phases]: Remove 'build-headless phase (headless is no longer has a separate
build). Add 'fix-dl-open-paths and 'unbundle-xkbcommon phases. In 'install
phase, remove headless output. Update 'wrap phase to remove eudev.
[outputs]: Remove headless.
[inputs]: Add dbus, embree, enet, fontconfig, glslang, libpng, harfbuzz,
icu4c, libxkbcommon, openxr, speech-dispatcher, vulkan-loader, zlib. Remove
bullet. Rename freetype to freetype-with-brotli.
(godot-lts): New variable. godot@3 is the LTS release.
* gnu/packages/games.scm (superstarfighter)[native-inputs]: Use it.
[inputs]: Use it.
2023-07-14 11:08:31 -04:00
49b0a5ee5f
gnu: Add freetype-with-brotli.
...
* gnu/packages/fontutils.scm (freetype-with-brotli): New variable.
2023-07-14 10:53:19 -04:00
ff4f5a725e
gnu: racket: Update to 8.9.
...
* gnu/packages/chez.scm (chez-scheme-for-racket): Update to
9.9.9-pre-release.16.
* gnu/packages/racket.scm (%racket-version): Update to 8.9.
(racket)[inputs]<deinprogramm, draw, drracket, future-visualizer, gui>
<htdp, macro-debugger, math, pict, plot, rackunit, redex, scribble>
<slideshow, snip, typed-racket, srfi, swindle, syntax-color>
<web-server>: Update checksums.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-14 16:16:25 +02:00
bdd359526e
gnu: avfs: Use HTTPS home page.
...
* gnu/packages/file-systems.scm (avfs)[home-page]: Use HTTPS.
2023-07-09 02:00:11 +02:00
2be1a6795f
gnu: 4ti2: Update home page.
...
* gnu/packages/maths.scm (4ti2)[home-page]: Update.
2023-07-09 02:00:11 +02:00
8a9a7ae36e
gnu: aumix: Use Web Archive URLs.
...
* gnu/packages/linux.scm (aumix)[source, home-page]:
Use copies archived by the Wayback Machine.
2023-07-09 02:00:10 +02:00
0f766e8439
gnu: armadillo: Update to 12.4.1.
...
* gnu/packages/maths.scm (armadillo): Update to 12.4.1.
2023-07-09 02:00:10 +02:00
24d2c2bcda
gnu: aspell-dict-nb: Correct to 0.50-2.
...
* gnu/packages/aspell.scm (aspell-dict-nb): Fix version number.
No hash change.
2023-07-09 02:00:10 +02:00
6d552a1426
gnu: Use aquamaniac.de/ as home page for its projects.
...
* gnu/packages/gnucash.scm (gwenhywfar, aqbanking)[home-page]:
Use top-level directory as done upstream.
2023-07-09 02:00:09 +02:00
67fb8efdf7
gnu: ghostscript: Fix CVE-2023-36664.
...
* gnu/packages/ghostscript.scm (ghostscript/fixed): New variable.
(ghostscript)[replacement]: Assign it to new field.
* gnu/packages/patches/ghostscript-CVE-2023-36664.patch,
gnu/packages/patches/ghostscript-CVE-2023-36664-fixup.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2023-07-09 02:00:04 +02:00
b29bd4d35e
gnu: antiword: Use Web Archive URLs.
...
* gnu/packages/textutils.scm (antiword)[source, home-page]:
Use copies archived by the Wayback Machine.
2023-07-09 02:00:03 +02:00
5cbb60562d
gnu: anthy: Mark up description.
...
* gnu/packages/anthy.scm (anthy)[description]: Use @file{}.
2023-07-09 02:00:03 +02:00
b0e5576702
gnu: anthy: Add source mirror URL.
...
* gnu/packages/anthy.scm (anthy)[source]: Add a Japanese Gentoo
distfiles mirror.
2023-07-09 02:00:03 +02:00
5799552739
gnu: altermime: Cross-compile.
...
* gnu/packages/mail.scm (altermime)[arguments]: Use CC-FOR-TARGET.
Add a new 'do-not-strip phase.
2023-07-09 02:00:03 +02:00
bce8c88f42
gnu: altermime: Use G-expressions.
...
* gnu/packages/mail.scm (altermime)[arguments]:
Rewrite as G-expressions. Don't explicitly return #t from phases.
2023-07-09 02:00:02 +02:00
1d7e1fbc38
gnu: altermime: Download over HTTPS.
...
* gnu/packages/mail.scm (altermime)[source]: Use HTTPS.
2023-07-09 02:00:02 +02:00
11ae5491f9
gnu: alpine: Download over HTTPS.
...
* gnu/packages/mail.scm (alpine)[source]: Use HTTPS.
2023-07-09 02:00:02 +02:00
d3fa3e7313
gnu: aiger: Use HTTPS source & home page.
...
* gnu/packages/maths.scm (aiger)[source, home-page]: Use HTTPS.
2023-07-09 02:00:01 +02:00
24e5db1bc2
gnu: borg: Update to 1.2.4.
...
* gnu/packages/backup.scm (borg): Update to 1.2.4.
2023-07-09 02:00:01 +02:00
5f7c714c63
gnu: rumpkernel: Don't error for non x86 systems.
...
As the lack of handling other systems, say aarch64-linux here seemed to cause
problems with guix pull on these systems. This should work around #64609 .
* gnu/packages/hurd.scm (rumpkernel)[arguments]: Don't error for any system.
2023-07-14 11:54:02 +01:00
a041bbb4bf
Revert "gnu: mig: Update to 1.8+git20230520."
...
As noted in the comment, I think using git-fetch caused problems computing
derivaations for i586-linux (Guix would just use more and more memory).
This reverts commit 999a6ac0cf
2023-07-14 11:53:12 +01:00
ddbfef2e95
gnu: zig-0.9: Fix building on riscv64-linux.
...
* gnu/packages/zig.scm (zig-0.9)[source]: Add patch.
[arguments]: Skip tests when building for riscv64-linux. When building
for riscv64-linux add a phase to adjust the tests.
* gnu/packages/patches/zig-0.9-riscv-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2023-07-14 09:20:01 +03:00
92d18dc568
gnu: linux-libre: Update to 6.3.13.
...
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.13.
(linux-libre-6.3-pristine-source): Update hash.
2023-07-13 22:17:27 -04:00
ea81a0417a
gnu: Add python-plotnine.
...
* gnu/packages/python-science.scm (python-plotnine): New variable.
2023-07-13 22:29:24 +02:00
f7c6d31e33
gnu: python-mizani: Fix embedded version string.
...
* gnu/packages/python-xyz.scm (python-mizani)[native-inputs]: Add
python-setuptools-scm to correct embedded version form 0.0.0 to 0.9.2.
2023-07-13 22:29:24 +02:00
b4fe82bd8a
gnu: gnumach: Disable builtin networking.
...
See also
https://logs.guix.gnu.org/hurd/2023-05-25.log#163610
* gnu/packages/hurd.scm (gnumach)[arguments]: Add --disable-net-group,
--disable-pcmcia-group, and --disable-wireless-group.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 19:00:09 +02:00
9c1957921a
services: static-networking: Support netdde for the Hurd.
...
As suggested by Sergey Bugaev on bug-hurd
https://lists.gnu.org/archive/html/bug-hurd/2023-05//msg00455.html
* gnu/services/base.scm (static-networking->hurd-pfinet-options): Use
/DEV/ethX. Use long options for settrans.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 19:00:05 +02:00
cefcf0fb04
system: hurd: Add netdde to %base-packages/hurd.
...
* gnu/system/hurd.scm (%base-packages/hurd): Add netdde.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 19:00:02 +02:00
030b15d466
hurd-boot: Cater for netdde.
...
* gnu/build/hurd-boot.scm (set-hurd-device-translators): Setup translators for
netdde, eth{0,1}. Create /servers/socket/{inet,inet6} symlinks.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:57 +02:00
37256c02a2
gnu: netdde: Resurrect and update to 2.6.32.65-2-e67c284ac1.
...
* gnu/packages/patches/netdde-build-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/hurd.scm (netdde)[source]: Update to
e67c284ac113d939b10b4578334f27dab29d5b08 and use it.
[inputs]: Add zlib:static.
[arguments]: Remove #true from build phases. In 'build' phase, remove
obsolete CFLAGS, and also build static version. In 'install' phase,
install them in <out>/hurd. There is no check target, so set #:tests?
to #false.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:22 +02:00
bbfb41ed9d
gnu: gnumach: Support "noide" argument.
...
* gnu/packages/patches/gnumach-support-noide.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/hurd.scm (gnumach-headers): Use it.
* doc/guix.texi (Bootloader Configuration): Document it.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:17 +02:00
c22c29b0c4
bootloader: grub: Use rumpdisk-style root when booting with "noide".
...
* gnu/bootloader/grub.scm (make-grub-configuration): When "noide" is in
arguments, use device name "wd0" rather than "hd0".
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:13 +02:00
7f86dad611
system: hurd: Boot with pci.arbiter and rumpdisk.
...
* gnu/system.scm (hurd-multiboot-modules): Add commands for pci.arbiter and
rumpdisk.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:06 +02:00
09657f3ee7
services: childhurd: Bump default qemu memory to 2048MB.
...
When booting with pci-arbiter and rumpdisk and using 1024MB of memory for
qemu, booting hangs, or seems to hang, at the end of the rumpdisk boot
messages. At least 1200MB is required, currently.
* gnu/services/virtualization.scm (<hurd-vm-configuration>)[memory-size]: Bump
to 2048.
* gnu/system/examples/bare-hurd.tmpl: Suggest using 2048 here too. Update
example `guix system image' and "qemu" command lines too.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:59:02 +02:00
fe873fb417
hurd-boot: Setup pci-arbiter and rumpdisk translators.
...
* gnu/build/hurd-boot.scm (make-hurd-device-nodes): Create "servers/bus/pci.
(set-hurd-device-translators): Create transators for pci-arbiter, rumpdisk,
and /dev/wd0..3s1..4.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:58 +02:00
5981e99f0a
gnu: hurd: Add rumpkernel.
...
* gnu/packages/patches/hurd-fix-rumpdisk-build.patch,
gnu/packages/patches/hurd-rumpdisk-no-hd.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/hurd.scm (hurd): Use them.
(hurd)[inputs]: Replace util-linux with util-linux:static, add parted,
rumpkernel.
[arguments]: Rename `prepare-dde' phase to 'prepare-addons'. Add "rumpdisk"
directory. Add --enable-static-progs=... option to #:configure-flags, and
remove --without-parted.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:53 +02:00
451b2db3df
gnu: parted: Support building for the Hurd.
...
* gnu/packages/disk.scm (parted)[inputs]: Remove lvm2, add hurd-minimal
when building for the Hurd.
[arguments]: Add configure-flag '--disable-device-mapper' when building for
the Hurd.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:47 +02:00
c8799fafa4
gnu: hurd-minimal: Include libshouldbeinlibc and libstore.
...
* gnu/packages/hurd.scm (hurd-minimal)[inputs]: Add gnumach-headers.
[arguments]: Rewrite to include libshouldbeinlibc and libstore.
* gnu/packages/cross-base.scm (cross-kernel-headers*): Update xhurd-minimal
accordingly: Add xgnumach-headers, add them to cpath, use gexps for
modify-phases, add delete-shared-target phase.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:43 +02:00
f86de02dde
gnu: Add rumpkernel.
...
This uses the Debian Salsa rumpkernel package git as upstream as that is where
delopment happens. Once things have stabalized upstream may change to the
NetBSD git from where Debian takes their snapshots.
* gnu/packages/hurd.scm (rumpkernel): New variable.
(hurd-headers)[native-inputs]: Use cross-mig directly.
(gnumach)[native-inputs]: Likewise.
(hurd)[native-inputs]: Likewise.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:39 +02:00
18757f1a25
gnu: hurd: Update libpciaccess to 0.17.
...
As suggested by youpi on IRC
https://logs.guix.gnu.org/hurd/2023-05-17.log#132259
libpciaccess-0.16 is too old for the Hurd and would need Hurd-specific patches
while libpciaccess-0.17 works out of the box.
* gnu/packages/hurd.scm (hurd)[inputs]: Use libpciaccess-0.17.
(netdde)[inputs]: Likewise.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:34 +02:00
5ffdcb3aa1
gnu: Add libpciaccess-0.17.
...
* gnu/packages/xorg.scm (libpciaccess-0.17): New variable.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
2023-07-13 18:58:06 +02:00
1f19387ca7
gnu: hurd: Update to v0.9.git20230216.
...
* gnu/packages/hurd.scm (hurd-headers): Update to v0.9.git20230216.
2023-07-13 18:20:07 +02:00
999a6ac0cf
gnu: mig: Update to 1.8+git20230520.
...
* gnu/packages/hurd.scm (mig)[source]: Update to 1.8+git20230520.
* gnu/packages/patches/gnumach-add-missing-const_mach_port_name_array_t-type.patch:
Drop patch.
* gnu/local.mk (dist_patch_DATA): Unregister it.
2023-07-13 18:20:06 +02:00
2edd67d34b
gnu: gnumach: Update to 1.8+git20221224.
...
* gnu/packages/hurd.scm (gnumach-headers): Update to 1.8+git20221224.
2023-07-13 18:20:06 +02:00
0dd293b4d9
gnu: Add libc-for-target and glibc/hurd.
...
* gnu/packages/patches/glibc-2.37-hurd-clock_t_centiseconds.patch
* gnu/packages/patches/glibc-2.37-hurd-local-clock_gettime_MONOTONIC.patch
* gnu/packages/patches/glibc-2.37-versioned-locpath.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/base.scm (glibc/hurd, libc-for-target): New variables.
(glibc/hurd-headers): Use glibc/hurd.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[outputs,
source, arguments]
(glibc-final)[source]: Use libc-for-target instead of glibc.
* gnu/packages/cross-base.scm (cross-libc/deprecated, cross-libc*): Use
libc-for-target.
This part fixes
https://issues.guix.gnu.org/63641#25
* gnu/packages/commencement.scm (%final-inputs): Change to memoized lambda
taking "system".
* gnu/packages/commencement.scm (canonical-package): Likewise, and update
user, passing (%current-system).
(make-gcc-toolchain): Update user, passing (%current-system).
* gnu/packages/base.scm (%final-inputs): Likewise.
* guix/scripts/refresh.scm (options->update-specs): Likewise.
* guix/build-system/gnu.scm (standard-packages): Add optional "system"
parameter.
(lower): Update caller.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Co-authored-by: Janneke Nieuwenhuizen <janneke@gnu.org>
2023-07-13 18:20:05 +02:00
0613df90dd
gnu: hurd: Update supported systems.
...
* gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal,
hurd-core-headers, gnumach): Update supported systems to %hurd-systems.
2023-07-13 18:20:04 +02:00
c2bb342b5f
gnu: gnumach-headers: Cross-build without relying on x86.
...
* gnu/packages/hurd.scm (gnumach-headers): Remove configure flags where we
say the builder is running x86.
* gnu/packages/cross-base.scm (cross-gnumach-headers): Work around limitation
of build system, by manually changing the target host_cpu without relying on
--host, because we don't have a working cross-compiler yet.
2023-07-13 18:20:04 +02:00
85ebfcf4ff
gnu: glibc/hurd-headers: Properly cross-build.
...
* gnu/packages/base.scm (glibc/hurd-headers): Rely on cross-mig, and remove
hardcoded configure flag `--host=i586-pc-gnu`.
* gnu/packages/cross-base.scm (cross-kernel-headers*): Add `--host` and
`--build` configure flags.
2023-07-13 18:20:01 +02:00
ff208b4b62
gnu: arpack-ng: Update to 3.9.0.
...
* gnu/packages/maths.scm (arpack-ng): Update to 3.9.0.
[source]: Add 'patches'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, and LIBTOOL.
(arpack-ng-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Use gexps.
* gnu/packages/patches/arpack-ng-propagate-rng-state.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2023-07-13 17:59:57 +02:00
5594f4c999
gnu: sssd: Update to 2.9.1.
...
* gnu/packages/sssd.scm (sssd): Update to 2.9.1.
[native-inputs]: Add bc.
* gnu/packages/patches/sssd-system-directories.patch: Adjust for new version.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-13 17:58:38 +02:00
ae92d98b93
gnu: clang-runtime-15: Fix address sanitizer support
...
$ guix shell clang-toolchain@15 -- clang -o test -fsanitize=address test.c
ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan_static-x86_64.a: No such file or directory
ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan-x86_64.a: No such file or directory
clang-15: error: linker command failed with exit code 1 (use -v to see invocation)
* gnu/packages/llvm.scm (clang-runtime-15): Fix address sanitizer
support by bringing back the static libraries.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-13 17:20:02 +02:00
dd4c199210
gnu: libleak: Update to 0.3.6.
...
* gnu/packages/debug.scm (libleak): Update to 0.3.6.
2023-07-13 10:47:33 +02:00
2794caed7c
gnu: Add r-numbat.
...
* gnu/packages/bioinformatics.scm (r-numbat): New variable.
2023-07-12 21:34:07 +02:00
3b524cde71
gnu: Add r-bpcells.
...
* gnu/packages/bioinformatics.scm (r-bpcells): New variable.
2023-07-12 16:45:42 +02:00
713d3952e4
gnu: nyxt: Update to 3.4.0.
...
* gnu/packages/web-browsers.scm (nyxt): Update to 3.4.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-12 16:11:40 +02:00
e94abf55b7
gnu: strace: Update to 6.4.
...
* gnu/packages/linux.scm (strace): Update to 6.4.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-12 15:57:54 +02:00
b90310cf85
gnu: go: Add CPU tuning targets.
...
* gnu/packages/golang.scm (go-1.17)[properties]: New field.
(%go-1.17-arm-micro-architectures,
%go-1.17-powerpc64le-micro-architectures,
%go-1.18-x86_64-micro-architectures): New variables.
(go-1.18)[properties]: New field.
2023-07-12 16:48:28 +03:00
db6503a6ff
gnu: %gcc-11-x86_64-micro-architectures: Add psabi entries.
...
* gnu/packages/gcc.scm (%gcc-11-x86_64-micro-architectures): Add entries
for x86_64-v{1,2,3,4}.
2023-07-12 16:48:24 +03:00
f2f27c4952
gnu: r-tcgabiolinks: Update to 2.28.3.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.3.
2023-07-12 14:29:11 +02:00
2ef18c24a4
gnu: r-bionero: Update to 1.8.5.
...
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.5.
[propagated-inputs]: Remove r-ggnewscale and r-networkd3; add r-ggdendro and r-rlang.
2023-07-12 14:29:11 +02:00
cbdaf26d0c
gnu: r-biocthis: Update to 1.10.3.
...
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.3.
2023-07-12 14:29:11 +02:00
165a4755a4
gnu: r-basilisk: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.1.
2023-07-12 14:29:11 +02:00
bdd11e0229
gnu: r-delayedmatrixstats: Update to 1.22.1.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.1.
2023-07-12 14:29:11 +02:00
5a61307327
gnu: r-sparsematrixstats: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.2.
2023-07-12 14:29:11 +02:00
72c0125649
gnu: r-fishpond: Update to 2.6.2.
...
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.2.
2023-07-12 14:29:11 +02:00
3bfbd6ddd8
gnu: r-bioccheck: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.1.
2023-07-12 14:29:11 +02:00
aada7f3a53
gnu: r-universalmotif: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.1.
2023-07-12 14:29:11 +02:00
e728562cd3
gnu: r-variancepartition: Update to 1.30.2.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.2.
2023-07-12 14:29:11 +02:00
c4ea43f75c
gnu: r-variantfiltering: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.1.
2023-07-12 14:29:11 +02:00
8637eba2a5
gnu: r-quasr: Update to 1.40.1.
...
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.1.
2023-07-12 14:29:11 +02:00
1d53aa680e
gnu: r-motifbreakr: Update to 2.14.2.
...
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.14.2.
2023-07-12 14:29:11 +02:00
a98f8bdcf3
gnu: r-lpsymphony: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.1.
[native-inputs]: Add gfortran.
2023-07-12 14:29:10 +02:00
0514c45d4a
gnu: r-glmgampoi: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.2.
2023-07-12 14:29:10 +02:00
75a5504e49
gnu: r-interactionset: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.1.
2023-07-12 14:29:10 +02:00
6652f72e13
gnu: r-matrixgenerics: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.2.
2023-07-12 14:29:10 +02:00
1b83659902
gnu: r-systempiper: Update to 2.6.3.
...
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.3.
2023-07-12 14:29:10 +02:00
0a0304ef3a
gnu: r-summarizedexperiment: Update to 1.30.2.
...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.2.
2023-07-12 14:29:10 +02:00
464ad1fd79
gnu: r-maaslin2: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.14.1.
[propagated-inputs]: Remove r-lpsymphony; add r-tibble.
2023-07-12 14:29:10 +02:00
5588562fb9
gnu: r-limma: Update to 3.56.2.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.2.
2023-07-12 14:29:10 +02:00
5db8d3e600
gnu: r-lfa: Update to 2.0.11.
...
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.0.11.
[propagated-inputs]: Add r-rspectra.
2023-07-12 14:29:10 +02:00
3193a2a04d
gnu: r-genomicfeatures: Update to 1.52.1.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.1.
2023-07-12 14:29:10 +02:00
2b62bc3f67
gnu: r-deseq2: Update to 1.40.2.
...
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.2.
2023-07-12 14:29:10 +02:00
6604189891
gnu: r-biomart: Update to 2.56.1.
...
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.1.
2023-07-12 14:29:10 +02:00
1f0633db11
gnu: r-annotationforge: Update to 1.42.2.
...
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.2.
2023-07-12 14:29:10 +02:00
Tobias Geerinckx-Rice
Ricardo Wurmus
Christopher Baines
Danny Milosavljevic
Guillaume Le Vaillant
Liliana Marie Prikler
Lilah Tascheter
Ahmad Draidi
Brian Cully
Leo Famulari
Artyom Bologov
John Kehayias
Philip McGrath
Efraim Flashner
Janneke Nieuwenhuizen
Josselin Poiret
Ludovic Courtès
Timotej Lazar
Tobias Kortkamp
fanquake
Andre A. Gomes