866f306cf5
gnu: mlt: Update to 7.6.0.
...
* gnu/packages/video.scm (mlt): Update to 7.6.0.
2022-04-20 23:39:11 -03:00
dd2ab92d9d
home: shepherd: Redirect input port to /dev/null.
...
Suggested by Aleksandr Vityazev <avityazev@posteo.org>.
* gnu/home/services/shepherd.scm (home-shepherd-configuration-file):
Redirect input port to /dev/null.
2022-04-21 00:02:21 +02:00
bc867b2ab0
home: shepherd: "shepherd.conf" returns one value.
...
Fixes <https://issues.guix.gnu.org/54779 >.
Reported by Aleksandr Vityazev <avityazev@posteo.org>
and Nicolas Graves <ngraves@ngraves.fr>.
* gnu/home/services/shepherd.scm (home-shepherd-configuration-file):
Return one value.
2022-04-21 00:00:14 +02:00
cd5c31d192
gnu: Add emacs-cpreproc.
...
* gnu/packages/emacs-xyz.scm (emacs-cpreproc): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:45 +02:00
ed2e797750
gnu: Add pikchr.
...
* gnu/packages/pikchr.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:45 +02:00
bd6e9be532
gnu: aws-sdk-cpp: Update to 1.9.236.
...
* gnu/packages/cpp.scm (aws-sdk-cpp): Update to 1.9.236.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:45 +02:00
c542d084c0
gnu: aws-crt-cpp: Update to 0.17.27.
...
* gnu/packages/cpp.scm (aws-crt-cpp): Update to 0.17.27.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:45 +02:00
fe75dc2552
gnu: aws-c-mqtt: Update to 0.7.10.
...
* gnu/packages/c.scm (aws-c-mqtt): Update to 0.7.10.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:45 +02:00
4773664eb8
gnu: aws-c-s3: Update to 0.1.38.
...
* gnu/packages/c.scm (aws-c-s3): Update to 0.1.38.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:44 +02:00
d2cb3f9905
gnu: aws-c-auth: Update to 0.6.11.
...
* gnu/packages/c.scm (aws-c-auth): Update to 0.6.11.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:44 +02:00
fbf1435587
gnu: aws-c-http: Update to 0.6.13.
...
* gnu/packages/c.scm (aws-c-http): Update to 0.6.13.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:44 +02:00
4bd4c53aac
gnu: Add aws-c-sdkutils.
...
* gnu/packages/c.scm (aws-c-sdkutils): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:44 +02:00
139970c806
gnu: aws-c-cal: Update to 0.5.17.
...
* gnu/packages/c.scm (aws-c-cal): Update to 0.5.17.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:44 +02:00
7c45af91f4
gnu: aws-c-io: Update to 0.10.20.
...
* gnu/packages/c.scm (aws-c-io): Update to 0.10.20.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:44 +02:00
f796dc9207
gnu: aws-c-common: Update to 0.6.20.
...
* gnu/packages/c.scm (aws-c-common): Update to 0.6.20.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:44 +02:00
25a1c60b1c
gnu: aws-lc: Update to 1.0.2.
...
* gnu/packages/tls.scm (aws-lc): Update to 1.0.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:43 +02:00
bc3e32454f
gnu: s2n: Update to 1.3.10.
...
* gnu/packages/tls.scm (s2n): Update to 1.3.10.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:43 +02:00
a82b0741a3
gnu: folly: Update to 2022.04.11.00.
...
* gnu/packages/cpp.scm (folly): Update to 2022.04.11.00.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:43 +02:00
a1362e674f
gnu: cxxopts: Update to 3.0.0.
...
* gnu/packages/cpp.scm (cxxopts): Update to 3.0.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:43 +02:00
8852f911ff
git-download: Set locale to deal with Unicode in git metadata.
...
Without this the git-fetch GEXP is run in an environment that uses ASCII
character encoding when strings are crossing the Guile - C boundary. It means
that e.g. tag names that have Unicode chars in them will cause problems,
e.g. when walking and deleting the .git directory.
An example in the wild: https://github.com/klauspost/pgzip/tags
Fixes <https://issues.guix.gnu.org/54893 >.
* guix/git-download.scm (git-fetch): Call 'setenv' and 'setlocale' to
set it to en_US.utf8.
* gnu/packages/commencement.scm (glibc-utf8-locales-final): Make public.
Add 'properties' field.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-20 23:46:43 +02:00
8540c2d86c
gnu: ungoogled-chromium: Update to 100.0.4896.127-1.
...
* gnu/packages/chromium.scm (%chromium-version): Set to 100.0.4896.127-1.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2022-04-20 18:26:56 +02:00
0cf1178a65
gnu: idris: Update to 1.3.4.
...
* gnu/packages/patches/idris-build-with-haskeline-0.8.patch,
gnu/packages/patches/idris-build-with-megaparsec-9.patch,
gnu/packages/patches/idris-disable-test.patch: Delete patches.
* gnu/local.mk (dist_patch_DATA): Unregister them.
* gnu/packages/idris.scm (idris): Update to 1.3.4.
[source]: Use git-fetch. Adjust patches.
Co-authored-by: Attila Lendvai <attila@lendvai.name>
2022-04-20 08:35:48 -05:00
ae6cd99573
gnu: idris: Use cc-for-target.
...
* gnu/packages/idris.scm (idris)[arguments]: Use cc-for-target in place of
"gcc".
2022-04-20 08:35:48 -05:00
b2a66e1071
gnu: idris: Remove trailing #t.
...
* gnu/packages/idris.scm (idris)[arguments]: Remove trailing #t.
2022-04-20 08:35:48 -05:00
101edbe63a
gnu: Add cl-just-getopt-parser.
...
* gnu/packages/lisp-xyz.scm (sbcl-just-getopt-parser,
ecl-just-getopt-parser, cl-just-getopt-parser): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-20 13:31:28 +02:00
ffb616b69d
gnu: vcflib: Update to 1.0.3.
...
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.3.
[source]: Remove trailing #t.
[arguments]: Remove trailing #t from phases.
2022-04-19 21:56:50 +03:00
0b681c5896
gnu: komikku: Update to 0.38.0.
...
* gnu/packages/gnome.scm (komikku): Update to 0.38.0.
2022-04-19 20:28:01 +02:00
6b4d37760e
gnu: openttd: Use new package style.
...
* gnu/packages/games.scm (openttd)[arguments]: Convert to list of
G-Expressions.
<install-data>: Use search paths to find ‘/share/games/openttd’ input
directories.
[native-inputs]: Use modify-inputs.
2022-04-19 20:28:01 +02:00
5376f3d058
gnu: openttd-openmsx: Use new package style.
...
* gnu/packages/games.scm (openttd-openmsx)[arguments]: Convert to list of
G-Expressions.
[native-inputs]: Drop labels.
2022-04-19 20:28:01 +02:00
4df82befc9
gnu: openttd-opensfx: Use new package style.
...
* gnu/packages/games.scm (openttd-opensfx)[arguments]: Convert to list of
G-Expressions. Drop trailing ‘#t’s.
[native-inputs]: Drop labels.
2022-04-19 20:28:01 +02:00
2bae85d39b
gnu: openttd-gfx: Use new package style.
...
* gnu/packages/games.scm (openttd-gfx)[arguments]: Convert to list of
G-Expressions.
[native-inputs]: Drop labels.
2022-04-19 20:28:01 +02:00
a1acec2fe9
gnu: openttd-engine: Drop labels from inputs.
...
* gnu/packages/games.scm (openttd-engine)[inputs]: Drop labels.
2022-04-19 20:28:00 +02:00
f044d951b0
gnu: openttd: Let the music play.
...
* gnu/packages/games.scm (openttd)[inputs]: Remove timidity++.
Add fluidsynth and freepats-gm.
[#:phases]<patch-sources>: New phase.
2022-04-19 20:28:00 +02:00
e597612bf3
gnu: Add freepats-gm.
...
* gnu/packages/audio.scm (freepats-gm): New variable.
2022-04-19 20:28:00 +02:00
f2d0ecd22f
gnu: gnome-shell-extension-just-perfection: Update to 20.0.
...
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-just-perfection): Update to 20.0.
2022-04-19 20:28:00 +02:00
cd23250c16
gnu: kmessagelib: Fix building.
...
* gnu/packages/kde-pim.scm (kmessagelib)[arguments]: Adjust custom
'extend-CPUS_INCLUDE_PATH phase to specifically add libkdepim.
2022-04-19 20:05:01 +03:00
f03e08699c
gnu: polyml: Update to 5.9.
...
* gnu/packages/sml.scm (polyml): Update to 5.9.
[arguments]<#:configure-flags>: Remove nonexistent options.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 18:07:49 +02:00
72298df79d
gnu: Fix input typoes.
...
* gnu/packages/emulators.scm (nestopia-ue)[inputs]: Move ',' to its
operand.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Same.
2022-04-19 17:46:48 +03:00
35b4926799
gnu: kwave: Build with librsvg-for-system.
...
* gnu/packages/kde-multimedia.scm (kwave)[native-inputs]: Replace
librsvg with librsvg-for-system.
2022-04-19 17:46:41 +03:00
bfe6d6ea66
gnu: lrslib: Update to 7.2.
...
* gnu/packages/maths.scm (lrslib): Update to 7.2.
2022-04-19 16:09:32 +02:00
073e0c399d
gnu: arb: Update to 2.22.1.
...
* gnu/packages/algebra.scm (arb): Update to 2.22.1.
2022-04-19 15:35:10 +02:00
30d8748ca2
gnu: pari-gp: Update to 2.13.4.
...
* gnu/packages/algebra.scm (pari-gp): Update to 2.13.4.
2022-04-19 13:21:37 +02:00
09555d22ea
gnu: geary: Remove input labels.
...
* gnu/packages/gnome.scm (geary)[inputs, native-inputs]: Remove labels.
2022-04-19 12:29:45 +02:00
19f4497cb6
gnu: geary: Add missing input.
...
* gnu/packages/gnome.scm (geary)[native-inputs]: Add python for configure phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:45 +02:00
85c5033316
gnu: libtcod: Remove trailing boolean.
...
* gnu/packages/game-development.scm (libtcod): Remove trailing boolean.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
d262a258bb
gnu: nomad-optimizer: Fix some tests.
...
* gnu/packages/maths.scm (nomad-optimizer)[arguments]<#:phases>
[fix-sources-for-tests]: Enable the pipefail option in the (generated)
script that runs tests. Enable the basic batch example3 test. Fix the
advanced library FixedVariable test (and seemingly the neighbor PSDMads
test). Expand some comments.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
11e761b9a6
gnu: nomad-optimizer: Update to 4.2.0.
...
* gnu/packages/maths.scm (nomad-optimizer): Update to 4.2.0.
[arguments]: Accommodate updated build process.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
3a6703268b
gnu: nomad-optimizer: Remove trailing booleans.
...
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Remove trailing
booleans.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
3a9b925f44
gnu: nomad-optimizer: Remove input labels.
...
* gnu/packages/maths.scm (nomad-optimizer)[native-inputs]: Remove
labels.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
d483dbe0fa
gnu: gmsh: Update to 4.9.5.
...
* gnu/packages/maths.scm (gmsh): Update to 4.9.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:44 +02:00
267176babc
gnu: asymptote: Update to 2.80.
...
* gnu/packages/plotutils.scm (asymptote): Update to 2.80.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:43 +02:00
7488c73dd2
gnu: gnuplot: Update to 5.4.3.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.4.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-19 12:29:43 +02:00
f95c037b79
services: yggdrasil: Tweak description.
...
* gnu/services/networking.scm (yggdrasil-service-type)[description]: Add
@command markup.
2022-04-19 12:29:43 +02:00
b24961717b
gnu: nheko: Update to 0.9.3.
...
* gnu/packages/messaging.scm (nheko): Update to 0.9.3.
2022-04-19 12:11:08 +02:00
6b677f4299
services: ipfs: Adjust for Shepherd 0.9.
...
This is a followup to e1f0c88ea2
2022-04-18 23:26:23 +02:00
f2239f3b95
gnu: emacs-chess: Fix path to pieces.
...
* gnu/packages/emacs-xyz.scm (emacs-chess)[arguments]: Fix path to pieces in
phase install-pieces.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:25:18 +02:00
283088f7b1
gnu: Add python-sre-yield.
...
* gnu/packages/python-xyz.scm (python-sre-yield): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:23:54 +02:00
fc2d94a3f9
gnu: Add python-ajsonrpc.
...
* gnu/packages/python-web.scm (python-ajsonrpc): New variable.
2022-04-18 23:17:11 +02:00
2aa5329023
gnu: Add python-quart.
...
* gnu/packages/python-web.scm (python-quart): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:14:37 +02:00
a76c879f14
gnu: janet: Update to 1.21.1.
...
* gnu/packages/lisp.scm (janet): Update to 1.21.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:09:39 +02:00
81ba7e6a45
gnu: mousepad: Update to 0.5.9.
...
* gnu/packages/xfce.scm (mousepad): Update to 0.5.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:08:11 +02:00
355982a3f5
gnu: orage: Update to 4.16.0.
...
* gnu/packages/xfce.scm (orage): Update to 4.16.0.
[arguments]: Remove unneeded phase fix-build-with-libical3.
[native-inputs]: Add glib:bin for dbus-binding-tool.
[inputs]: Add dbus-glib for dbus support, libxfce4ui.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:07:55 +02:00
617d8a836f
gnu: Remove python-pyyaml-for-awscli.
...
* gnu/packages/python-xyz.scm (python-pyyaml-for-awscli): Remove
variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:02:39 +02:00
4810100db6
gnu: Remove python-botocore-for-awscli.
...
* gnu/packages/python-xyz.scm (python-botocore-for-awscli): Remove
variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:02:35 +02:00
7cf080aa71
gnu: awscli: Update to 1.22.90.
...
* gnu/packages/python-web.scm (awscli): Update to 1.22.90.
[arguments] Use search-input-file to find groff.
[inputs]: Replace python-botocore-for-awscli with python-botocore.
Add groff.
[native-inputs]: Remove groff.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:02:29 +02:00
b0ec23afb7
gnu: python-jmespath: Update to 1.0.0.
...
* gnu/packages/python-xyz.scm (python-jmespath): Update to 1.0.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 23:02:23 +02:00
5389c5ea57
gnu: nss-certs: Support cross-compilation.
...
Reported by phodina <phodina@protonmail.com>.
* gnu/packages/certs.scm (nss-certs)[arguments]: In 'install' phase, do
not refer to '%output' when cross-compiling.
2022-04-18 22:58:06 +02:00
902099a8c0
gnu: ntp: Support cross-compilation.
...
* gnu/packages/ntp.scm (ntp)[arguments]: Add configuration flag.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-18 22:57:18 +02:00
237d90a780
gnu: openjdk17: Make big cursors work.
...
* gnu/packages/java.scm (openjdk17)[source]: Add patch.
2022-04-18 12:59:04 +02:00
aa01b37ef6
gnu: openjdk16: Make big cursors work.
...
* gnu/packages/java.scm (openjdk16)[source]: Add patch.
2022-04-18 12:59:04 +02:00
f4dd7bf94e
gnu: openjdk15: Make big cursors work.
...
* gnu/packages/patches/openjdk-15-xcursor-no-dynamic.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (openjdk15)[source]: Add it.
2022-04-18 12:58:57 +02:00
b629b30269
gnu: Add cl-ipfs-api2.
...
* gnu/packages/lisp-xyz.scm (cl-ipfs-api2, ecl-cl-ipfs-api2,
sbcl-cl-ipfs-api2): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-18 09:26:36 +02:00
31f42393e8
gnu: Mutt: Update to 2.2.3 [fixes CVE-2022-1328].
...
https://gitlab.com/muttmua/mutt/-/issues/404
* gnu/packages/mail.scm (mutt): Update to 2.2.3.
2022-04-18 00:24:01 -04:00
93f0b31a99
gnu: ccache: Update to 4.6.
...
* gnu/packages/ccache.scm (ccache): Update to 4.6.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-04-17 17:59:23 +03:00
e5174200c4
gnu: gnucash: Update to 4.10.
...
Variables gnucash and gnucash-docs have to be updated together.
* gnu/packages/gnucash.scm (gnucash)[version]: Update to 4.10.
(gnucash-docs)[version]: Update to 4.10.
[build-system]: Migrate from gnu to cmake.
[arguments]: Disable tests.
2022-04-17 05:03:00 -04:00
0c89fe9e17
gnu: linux-libre 4.19: Update to 4.19.238.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.238.
(linux-libre-4.19-pristine-source): Update hash.
2022-04-16 11:27:50 -04:00
d5adbf6c9f
gnu: linux-libre 5.4: Update to 5.4.189.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.189.
(linux-libre-5.4-pristine-source): Update hash.
2022-04-16 11:27:44 -04:00
7eb9176a6e
gnu: bitcoin-unlimited: Update to 1.10.0.0.
...
* gnu/packages/finance.scm (bitcoin-unlimited): Update to 1.10.0.0.
[arguments]: Update 'fix-tests' phase.
2022-04-16 11:49:48 +02:00
4bd3fdda63
gnu: electrum: Update to 4.2.1.
...
* gnu/packages/finance.scm (electrum): Update to 4.2.1.
[inputs]: Replace python-aiorpcx-0.18 by python-aiorpcx. Add zbar.
2022-04-16 11:26:48 +02:00
6be6ea4276
gnu: electron-cash: Update to 4.2.7.
...
* gnu/packages/finance.scm (electron-cash): Update to 4.2.7.
2022-04-16 11:12:17 +02:00
6db5787120
gnu: emacs-message-view-patch: Update to 0.2.0-40bc2e5
...
* gnu/packages/emacs-xyz (emacs-message-view-patch): Update it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:03 +02:00
c6c0c985d3
gnu: emacs-mu4e-patch: Rename to emacs-message-view-patch
...
The name was changed upstream to reflect that this extension works for both
mu4e and gnus.
* gnu/packages/emacs-xyz.scm (emacs-mu4e-patch): Deprecate it.
(emacs-message-view-patch): Renamed from emacs-mu4e-patch. Description,
synopsis, and inputs adjusted to reflect that mu4e is not required.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:03 +02:00
6995d68435
gnu: xfce4-diskperf-plugin: Update to 2.7.0.
...
* gnu/packages/xfce.scm (xfce4-diskperf-plugin): Update to 2.7.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:03 +02:00
3b2ea81894
gnu: elementary-xfce-icon-theme: Update to 0.16.
...
* gnu/packages/xfce.scm (elementary-xfce-icon-theme): Update to 0.16.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
0495819926
gnu: xfce4-terminal: Update to 1.0.0.
...
* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.0.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
4ed02d571a
gnu: Add python-verspec.
...
* gnu/packages/python.xyz.scm (python-verspec): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
304c6b395c
gnu: Add python-shtab.
...
* gnu/packages/python-xyz.scm (python-shtab): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
6e174c4edd
gnu: shepherd: Support cross-compilation.
...
Reported by phodina <phodina@protonmail.com>.
* gnu/packages/admin.scm (shepherd-0.9)[arguments]: New field.
[native-inputs]: Add GUILE-FIBERS-1.1.
2022-04-15 19:13:02 +02:00
35a1de1a4c
gnu: mblaze: Offer contrib executables.
...
* gnu/packages/mail.scm (mblaze)[outputs, inputs]: New fields.
[arguments]: Add #:modules. Add 'install-contrib' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:02 +02:00
ff3355dcbf
gnu: streamlink: Update to 3.2.0.
...
* gnu/packages/video.scm (streamlink): Update to 3.2.0.
[inputs]: Add python-lxml and python-pycountry, remove python-iso3166 and python-iso639.
[arguments]<#:phases>{check}: Use pytest.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-04-15 19:13:01 +02:00
ee617c4800
gnu: python-lxml: Add 4.7.1.
...
* gnu/packages/xml.scm (python-lxml-4.7): New variable.
2022-04-15 19:13:01 +02:00
179a949e60
gnu: cl-nfiles: Update to 0.4.0.
...
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 0.4.0.
[inputs]: Add sbcl-quri.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-15 17:09:03 +02:00
53a8e8fd6c
gnu: python-hmmlearn: Remove cythonized file.
...
* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add
snippet to remove cythonized file.
2022-04-15 02:11:03 +03:00
ac5f070631
gnu: python-aiohttp: Remove cythonized files.
...
* gnu/packages/python-web.scm (python-aiohttp)[source]: Add snippet to
remove cythonized files.
2022-04-14 23:30:27 +03:00
802c94034c
gnu: python-pywavelets: Remove cythonized files.
...
* gnu/packages/python-xyz.scm (python-pywavelets)[source]: Add snippet
to remove cythonized files.
[native-inputs]: Add python-cython.
2022-04-14 23:23:18 +03:00
6083372f61
gnu: python-igraph: Update to 0.9.10.
...
* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
2022-04-14 22:57:49 +03:00
d6a5bdf000
gnu: igraph: Update to 0.9.8.
...
* gnu/packages/graph.scm (igraph): Update to 0.9.8.
2022-04-14 22:57:06 +03:00
7034746e15
gnu: scregseg: Remove cythonized file.
...
* gnu/packages/bioinformatics.scm (scregseg)[source]: Add snippet to
remove cythonized file.
2022-04-14 22:55:33 +03:00
5059e7f01e
gnu: cl-py4cl: Update to 0.0.0-1.2f2a008.
...
* gnu/packages/lisp-xyz.scm (sbcl-py4cl): Update to 0.0.0-1.2f2a008.
[arguments]<#:phases>: Adjust substitutions to renamed files.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 20:31:59 +02:00
8f5b2f0693
gnu: Add emacs-org-modern.
...
* gnu/packages/emacs-xyz.scm (emacs-org-modern): New variable.
Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-04-14 11:34:03 -04:00
0ddca9d682
gnu: Add cl-numpy-file-format.
...
* gnu/packages/lisp-xyz.scm (cl-numpy-file-format, ecl-numpy-file-format,
sbcl-numpy-file-format): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
0f6aaf2f62
gnu: cl-who: Update to 1.1.4-3.07dafe9.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-who): Update to 1.1.4-3.07dafe9.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-14 16:33:52 +02:00
6bf6529792
gnu: linux-libre 5.10: Update to 5.10.111.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.111.
(linux-libre-5.10-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
0b20c8e071
gnu: linux-libre 5.15: Update to 5.15.34.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.34.
(linux-libre-5.15-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
1b7f05f72c
gnu: linux-libre: Update to 5.16.20.
...
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.20.
(linux-libre-5.16-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
0a3fee824b
gnu: linux-libre 5.17: Update to 5.17.3.
...
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.3.
(linux-libre-5.17-pristine-source): Update hash.
2022-04-14 10:22:54 -04:00
aaf4b08c6b
gnu: Update linux-libre 5.17 configuration files.
...
This option that adds new hardware support appeared after the 5.17 release.
* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: Enable support for Realtek
Ethernet switch chips.
2022-04-14 10:22:54 -04:00
b0dd06bd0c
gnu: Add r-xcir.
...
* gnu/packages/bioconductor.scm (r-xcir): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 14:53:17 +02:00
16372cb347
gnu: sundials: Remove input labels.
...
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
2022-04-14 14:48:21 +02:00
61bcd648ca
gnu: sundials: Update to 6.1.1.
...
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags. Change "MPI_ENABLE" to "ENABLE_MPI".
2022-04-14 14:48:21 +02:00
1f82602153
gnu: guile-fibers@1.1: Support cross-compilation.
...
Fixes <https://issues.guix.gnu.org/54793 >.
Reported by Mathieu Othacehe <othacehe@gnu.org>.
* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add
'support-cross-compilation' phase.
2022-04-14 14:48:20 +02:00
919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section.
...
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
2022-04-14 13:38:30 +02:00
03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
...
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
2022-04-14 13:37:23 +02:00
c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).
...
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
2022-04-14 13:35:22 +02:00
aafd0d2309
gnu: r-absseq: Move out of experiments section.
...
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
2022-04-14 13:34:11 +02:00
ed3697c040
gnu: r-abarray: Move out of experiments section.
...
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
2022-04-14 13:32:52 +02:00
67941709e2
gnu: r-aneufinder: Move to packages section.
...
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
2022-04-14 13:31:33 +02:00
cab6657094
gnu: Add r-absseq.
...
* gnu/packages/bioconductor.scm (r-absseq): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:29:48 +02:00
a436582124
gnu: Add r-abarray.
...
* gnu/packages/bioconductor.scm (r-abarray): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:20:07 +02:00
1b2b1c30e2
gnu: Add r-acde.
...
* gnu/packages/bioconductor.scm (r-acde): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 13:18:07 +02:00
dd9d26bce6
gnu: Add r-wppi.
...
* gnu/packages/bioconductor.scm (r-wppi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:47:24 +02:00
55be5fc400
gnu: Add r-acme.
...
* gnu/packages/bioconductor.scm (r-acme): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 12:33:27 +02:00
08df30f232
gnu: Add r-acgh.
...
* gnu/packages/bioconductor.scm (r-acgh): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:59:15 +02:00
50046194a2
gnu: libfprint: Fix build, add python for the tests.
...
* gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal
as it's needed by the tests.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:54:11 +02:00
839241501a
gnu: Add r-ace.
...
* gnu/packages/bioconductor.scm (r-ace): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:50:34 +02:00
7d990e775e
gnu: r-catalyst: Update description.
...
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-14 11:43:24 +02:00
d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
2022-04-14 11:29:40 +02:00
5acc125305
gnu: r-omnipathr: Update to 3.2.8.
...
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
2022-04-14 11:29:40 +02:00
2def20d3ae
gnu: r-bgeedb: Update to 2.20.1.
...
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
2022-04-14 11:29:40 +02:00
c7cb92e494
gnu: r-gviz: Update to 1.38.4.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
2022-04-14 11:29:40 +02:00
3c7e190eea
gnu: r-catalyst: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
2022-04-14 11:29:40 +02:00
3e07fbf32a
gnu: r-mscoreutils: Update to 1.6.2.
...
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
2022-04-14 11:29:40 +02:00
40735701a8
gnu: r-singler: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
2022-04-14 11:29:40 +02:00
2a71a7b961
gnu: r-s4vectors: Update to 0.32.4.
...
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
2022-04-14 11:29:40 +02:00
51ddaf48e8
gnu: r-experimenthub: Update to 2.2.1.
...
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
2022-04-14 11:29:39 +02:00
c9e925d444
gnu: r-universalmotif: Update to 1.12.4.
...
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
2022-04-14 11:29:39 +02:00
eadb1f53e9
gnu: r-variancepartition: Update to 1.24.1.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
2022-04-14 11:29:39 +02:00
9950ed71fc
gnu: r-cytolib: Update to 2.6.2.
...
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
2022-04-14 11:29:39 +02:00
0861d4fff5
gnu: r-rsubread: Update to 2.8.2.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
2022-04-14 11:29:39 +02:00
cb30400097
gnu: r-ropls: Update to 1.26.4.
...
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
2022-04-14 11:29:39 +02:00
0c478f50f2
gnu: r-birewire: Update to 3.26.5.
...
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
2022-04-14 11:29:39 +02:00
b446be46ba
gnu: r-biocfilecache: Update to 2.2.1.
...
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
2022-04-14 11:29:39 +02:00
5576a98b6a
gnu: r-massspecwavelet: Update to 1.60.1.
...
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
2022-04-14 11:29:39 +02:00
6f2d89fb40
gnu: r-atacseqqc: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
2022-04-14 11:29:39 +02:00
88ed3fc340
gnu: r-genomicscores: Update to 2.6.1.
...
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
2022-04-14 11:29:39 +02:00
e129f579f5
gnu: r-clusterprofiler: Update to 4.2.2.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
2022-04-14 11:29:39 +02:00
21037105ac
gnu: r-enrichplot: Update to 1.14.2.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
2022-04-14 11:29:38 +02:00
f8a38e8380
gnu: r-geoquery: Update to 2.62.2.
...
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
2022-04-14 11:29:38 +02:00
fe6a8b4338
gnu: r-karyoploter: Update to 1.20.3.
...
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
2022-04-14 11:29:38 +02:00
84c0ec875c
gnu: r-destiny: Update to 3.8.1.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
2022-04-14 11:29:38 +02:00
Vinicius Monego
Ludovic Courtès
Fredrik Salomonsson
pukkamustard
Greg Hogan
Attila Lendvai
Marius Bakke
Eric Bavier
Thomas Albers Raviola
Efraim Flashner
Liliana Marie Prikler
Foo Chuan Wei
Andreas Enge
Rene Saavedra
jgart
Paul A. Patience
Jonathan Brielmaier
Michael Rohleder
Peter Polidoro
Felix Gruber
Petr Hodina
Danny Milosavljevic
Leo Famulari
Raghav Gururajan
Guillaume Le Vaillant
Dominic Martinez
Zhu Zihao
Vincent Prat
B. Wilson
Chadwain Holness
André A. Gomes
Mădălin Ionel Patrașcu
Ludovic Courtès
Ricardo Wurmus