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4415 Commits (c93861c53cba56b03623625b0857dbfd0bdbb249)

Author SHA1 Message Date
Efraim Flashner 179900942d
gnu: rust-botan: Move to (gnu packages crates-crypto).
* gnu/packages/crates-io.scm (rust-botan-0.10, rust-botan-0.8,
rust-botan-sys-0.10, rust-botan-sys-0.8, rust-botan-src-0.21903,
rust-botan-src-0.21703): Move from here ...
* gnu/packages/crates-crypto.scm: ... to here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new file.

Change-Id: I459c94e9f70a51bdf48020792562e57ebc2119df
2024-02-20 13:57:56 +02:00
Efraim Flashner 6a56702df7
gnu: rust-block: Move to (gnu packages crates-apple).
* gnu/packages/crates-io.scm (rust-block-0.1, rust-block2-0.3,
rust-block2-0.2, rust-block-sys-0.2, rust-block-sys-0.1): Move from
here ...
* gnu/packages/crates-apple.scm: ... to here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new file.

Change-Id: I278dfdb829340fba937d29691b1451401675c87b
2024-02-20 13:57:24 +02:00
Efraim Flashner 87630f2881
gnu: rust-windows: Move to (gnu packages crates-windows).
* gnu/packages/crates-io.scm (rust-windows-0.48, rust-windows-0.46,
rust-windows-0.44, rust-windows-0.39, rust-windows-0.32,
rust-windows-0.9, rust-windows-aarch64-gnullvm-0.52,
rust-windows-aarch64-gnullvm-0.48, rust-windows-aarch64-gnullvm-0.42,
rust-windows-aarch64-msvc-0.52, rust-windows-aarch64-msvc-0.48,
rust-windows-aarch64-msvc-0.42, rust-windows-aarch64-msvc-0.39,
rust-windows-aarch64-msvc-0.36, rust-windows-aarch64-msvc-0.32,
rust-windows-aarch64-msvc-0.28, rust-windows-bindgen-0.51,
rust-windows-i686-gnu-0.52, rust-windows-i686-gnu-0.48,
rust-windows-i686-gnu-0.42, rust-windows-i686-gnu-0.36,
rust-windows-i686-gnu-0.32, rust-windows-i686-gnu-0.28,
rust-windows-i686-msvc-0.52, rust-windows-i686-msvc-0.48,
rust-windows-i686-msvc-0.42, rust-windows-i686-msvc-0.39,
rust-windows-i686-msvc-0.36, rust-windows-i686-msvc-0.32,
rust-windows-i686-msvc-0.28, rust-windows-implement-0.48,
rust-windows-implement-0.46, rust-windows-implement-0.44,
rust-windows-implement-0.39, rust-windows-implement-0.32,
rust-windows-interface-0.48, rust-windows-interface-0.46,
rust-windows-interface-0.44, rust-windows-interface-0.39,
rust-windows-metadata-0.51, rust-windows-sys-0.52,
rust-windows-sys-0.48, rust-windows-sys-0.45, rust-windows-sys-0.42,
rust-windows-sys-0.36, rust-windows-sys-0.28, rust-windows-gen-0.9,
rust-windows-macros-0.9, rust-windows-targets-0.52,
rust-windows-targets-0.48, rust-windows-targets-0.42,
rust-windows-targets-0.39, rust-windows-targets-0.32,
rust-windows-x86-64-gnu-0.52, rust-windows-x86-64-gnu-0.48,
rust-windows-x86-64-gnu-0.42, rust-windows-x86-64-gnu-0.39,
rust-windows-x86-64-gnu-0.36, rust-windows-x86-64-gnu-0.32,
rust-windows-x86-64-gnu-0.28, rust-windows-x86-64-gnullvm-0.52,
rust-windows-x86-64-gnullvm-48, rust-windows-x86-64-gnullvm-0.42,
rust-windows-x86-64-msvc-0.52, rust-windows-x86-64-msvc-0.48,
rust-windows-x86-64-msvc-0.42, rust-windows-x86-64-msvc-0.39,
rust-windows-x86-64-msvc-0.36, rust-windows-x86-64-msvc-0.32,
rust-windows-x86-64-msvc-0.28): Move from here ...
* gnu/packages/crates-windows.scm: ... to here.

Change-Id: I5abaa9402ae75199d4ec26b1e37b3a7293437c93
2024-02-20 13:56:58 +02:00
Efraim Flashner 123ea83f13
gnu: rust-rustls: Move to (gnu packages crates-tls).
* gnu/packages/crates-io.scm (rust-rustls-0.21, rust-rustls-0.20,
rust-rustls-0.19, rust-rustls-0.18, rust-rustls-0.17, rust-rustls-0.16,
rust-rustls-0.15, rust-rustls-0.14, rust-rustls-ffi-0.8,
rust-rustls-native-certs-0.6, rust-rustls-native-certs-0.5,
rust-rustls-native-certs-0.4, rust-rustls-pemfile-2,
rust-rustls-pemfile-1, rust-rustls-pemfile-0.2, rust-rustls-pki-types-1,
rust-rustls-webpki-0.101, rust-rustls-webpki-0.100): Move from here ...
* gnu/packages/crates-tls.scm: ... to here.

Change-Id: Ief4208a2f86151447337b9ca037b4b28f753a9f8
2024-02-20 13:56:56 +02:00
Efraim Flashner 6851b30def
gnu: rust-webpki: Move to (gnu packages crates-web).
* gnu/packages/crates-io.scm (rust-webpki-0.22, rust-webpki-0.21,
rust-webpki-0.19, rust-webpki-0.18, rust-webpki-roots-0.25,
rust-webpki-roots-0.23, rust-webpki-roots-0.22, rust-webpki-roots-0.21,
rust-webpki-roots-0.20, rust-webpki-roots-0.19, rust-webpki-roots-0.18,
rust-webpki-roots-0.17, rust-webpki-roots-0.16, rust-webpki-roots-0.15):
Move from here ...
* gnu/packages/crates-web.scm: ... to here.

Change-Id: I7eb05c11453bc780f4c66c2c3ac2c3c20cafcee3
2024-02-20 13:56:55 +02:00
Efraim Flashner 495c4868be
gnu: rust-git-testament-derive-0.1: Move to (gnu packages crates-vcs).
* gnu/packages/crates-io.scm (rust-git-testament-derive-0.1): Move from
here ...
* gnu/packages/crates-vcs.scm: ... to here.

Change-Id: If002423ef70413d6ced9b2f18d86d625fd5bf9ba
2024-02-20 13:56:54 +02:00
Efraim Flashner 27f4d9a2c0
gnu: rust-rspec-1: Remove dependency on clippy.
* gnu/packages/crates-io.scm (rust-rspec-1)[source]: Add patch.
[cargo-inputs]: Remove rust-clippy-0.0.153.
* gnu/packages/patches/rust-rspec-1-remove-clippy.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: Ia6cc5e2fa798986b93ccba5f8907de79676fd1b0
2024-02-20 13:56:52 +02:00
Efraim Flashner 8f99a3e604
gnu: rust-trash-2: Update to 2.1.5.
* gnu/packages/crates-io.scm (rust-trash-2): Update to 2.1.5.
[source]: Add patch.
[cargo-inputs]: Replace rust-windows-0.9 with 0.44.
* gnu/packages/patches/rust-trash-2-update-windows.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I707b2139800d37f3609958251893e5948e40cd34
2024-02-20 13:56:48 +02:00
Efraim Flashner e2cf93aaa8
gnu: rust-cargo-edit: Update to 0.12.2.
* gnu/packages/rust-apps.scm (rust-cargo-edit): Update to 0.12.2.
[source]: Add patch.
[cargo-inputs]: Add rust-clap-cargo-0.12, rust-home-0.5, rust-toml-0.7.
Replace rust-clap-3 with 4, rust-crates-index-0.18 with 0.19,
rust-git2-0.14 with 0.17, rust-toml-edit-0.14 with 0.19.  Remove
rust-dirs-next-2, rust-ureq-2.
[cargo-development-inputs]: Replace rust-predicates-2 with 3,
rust-snapbox-0.2 with 0.4, rust-trycmd-0.13 with 0.14.
[inputs]: Replace libgit2-1.4 with 1.6.
* gnu/packages/patches/rust-cargo-edit-remove-ureq.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I71ac74de44e322eb9f5233262b3a989395b592ff
2024-02-20 13:56:40 +02:00
Efraim Flashner eeaead0d2e
gnu: rust-ring-0.16: Generate more bundled files.
* gnu/packages/crates-io.scm (rust-ring-0.16-sources): New variable.
(rust-ring-0.16)[source]: Use rust-ring-0.16-sources.  Drop patches and
snippet.
[arguments]: Remove custom phase generating curve25519 tables.
[native-inputs]: Remove field.
(rust-rustls-0.20)[native-inputs]: Remove field.
* gnu/packages/rust-apps.scm (agate, alfis, maturin, rust-cargo-edit,
sniffglue, spotifyd, tealdeer)[native-inputs]: Remove perl.
* gnu/packages/patches/rust-ring-0.16-missing-files.patch,
gnu/packages/patches/rust-ring-0.16-test-files.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Change-Id: I919207b6aacab78602ae18123ab345a34b00863f
2024-02-20 13:56:39 +02:00
Efraim Flashner 18c35009eb
gnu: Add rust-ring-0.17.
* gnu/packages/crates-io.scm (rust-ring-0.17, rust-ring-0.17-sources):
New variables.
(rust-ring-0.16): Inherit from rust-ring-0.17.

Change-Id: Ic71f17e7d9c21f75a449ceededf8725870c2395b
2024-02-20 13:56:38 +02:00
Ricardo Wurmus 549a72f128
gnu: r-sgloptim: Apply patch to fix build.
* gnu/packages/patches/r-sgloptim.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sgloptim)[source]: Apply it.

Change-Id: I6435ec1dfadcffac684c378cd074777a19cd0d7f
2024-02-19 14:07:29 +01:00
Nicolas Graves 8b7e0c1952
gnu: Add restartd.
* gnu/packages/admin.scm (restartd): New variable.
* gnu/packages/patches/restartd-update-robust.patch: Add file.
* gnu/local.mk: Register gnu/packages/patches/restartd-update-robust.patch.

Change-Id: I38b9b70e97b64f006a86d7618a75f1ec3ed8b034
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-18 15:55:06 +01:00
Andreas Enge 0c3ae6dc84
gnu: arpack-ng: Update to 3.9.1.
* gnu/packages/maths.scm (arpack-ng): Update to 3.9.1. Drop patch.
* gnu/packages/patches/arpack-ng-propagate-rng-state.patch: Remove file.
* gnu/packages/maths.scm (dist_patch_DATA): Unregister patch.

Change-Id: I33a666c3a88fb2f6791c8d698eeb054a831103fc
2024-02-14 14:38:02 +01:00
Sharlatan Hellseher 1996575a7e
gnu: Add (gnu packages golang-compression) module.
* gnu/packages/golang-compression.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-compression.scm scope.

Change-Id: I1c68a3f6f9b3d6a316cba560b7fc81e707376417
2024-02-13 14:16:27 +00:00
Sharlatan Hellseher 5a77f2ee54
gnu: Add (gnu packages golang-build) module.
* gnu/packages/golang-build.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-build.scm scope.

Change-Id: I4605d44452859b47ed6369a234c7ead496b19c2a
2024-02-13 14:16:27 +00:00
David Elsing 52cca41c6f
gnu: avalon-toolkit: Update to 2.0.5a.
The bug freeing static memory and the makefile have been improved upstream, so
we don't have to work around them anymore. Now, two static libraries are built
instead.

* gnu/packages/chemistry.scm (avalon-toolkit): Update to 2.0.5a.
[source]: Switch to git reference from GitHub. Adjust snippet. Add patch from
the RDKit fork.
[arguments]: Remove 'dont-free-static-memory phase. Use provided
makefile. Adjust 'install phase.
* gnu/packages/patches/avalon-toolkit-rdkit-fixes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-02-13 11:04:48 +00:00
pukkamustard 01ee39cfee
gnu: opam: Update to 2.1.5.
* gnu/packages/ocaml.scm (opam): Update to 2.1.5.
  [native-inputs]: Add more test data.
  [arguments]: Disable failing test.
  (ocaml-graph): Update to 2.0.0.
  (ocaml-dose3): Update to 7.0.0.
* gnu/packages/patches/ocaml-dose3-Fix-for-ocaml-4.06.patch: Remove.
* gnu/packages/patches/ocaml-dose3-Install-mli-cmx-etc.patch: Remove.
* gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: Remove.
* gnu/packages/patches/ocaml-dose3-dont-make-printconf.patch: Remove.
* gnu/local.mk (dist_path_DATA): Unregister removed patches.

Change-Id: Ie715998a6d7740332187e1fe0742631964ba5a8a
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2024-02-08 23:23:32 +01:00
pukkamustard 4b941ab3d5
gnu: coq: Update to 8.17.1.
* gnu/packages/coq.scm (coq): Update to 8.17.1 and merge with coq-core and coq-stdlib.
  [arguments] Merge with coq-core and coq-stdlib. Add pre-build phases and
  add a custom install phase. Remove unnecessary test-target.
  [source](patches): Remove.
  [native-search-paths]: Remove COQLIBPATH and COQCORELIB.
  (coq-core): Remove variable.
  (coq-stdlib): Remove variable.
  (coq-ide)[propagated-inputs]: Add zlib.
  (coq-mathcomp-bigenough)[propagated-inputs]: Remove coq-core.
  (coq-mathcomp-finmap)[inputs]: Remove coq-stdlib.
  (coq-equations): Update to 1.3-8.17.
* gnu/packages/patches/coq-fix-envvars.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Co-authored-by: Josselin Poiret <dev@jpoiret.xyz>
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I0a0d9f7a6e06dd19ce1b66051334476d85f4f195
2024-02-08 23:15:44 +01:00
Felix Gruber a042bfcd7e
gnu: libgeotiff: Fix build with proj 9.3.1.
* gnu/packages/geo.scm (libgeotiff): [source]: Add patches to fix build
  with proj 9.3.1.
* gnu/local.mk: Add patch files.
* gnu/packages/patches/libgeotiff-fix-tests-on-i386.patch: New file.
* gnu/packages/patches/libgeotiff-fix-tests-with-proj-9.3.0.patch: New
  file.
* gnu/packages/patches/libgeotiff-fix-tests-with-proj-9.3.1.patch: New
  file.

Change-Id: I5f09e793698b0b137888faa0f595ef06850c6160
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-02-07 13:41:57 +01:00
Efraim Flashner 10dba10fd6
gnu: Register missing patch.
* gnu/local.mk (dist_patch_DATA): Add missing patch.

Change-Id: I82264a8cbea1550522994292e24f702f7cc78700
2024-02-07 10:30:50 +02:00
Greg Hogan 5618fd5d6f
gnu: spdlog: Update to 1.13.0.
* gnu/packages/logging.scm (spdlog): Update to 1.13.0.
[source]: Remove upstreamed patch.
* gnu/local.mk: Unregister it.
* gnu/packages/patches/spdlog-fix-tests.patch: Delete file.

Change-Id: I78b5021b9841d16f43a283eaee931b4f92746ab8
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-05 22:54:51 +01:00
Clément Lassieur 8f9bc4e952
gnu: torbrowser: Stop inheriting Icecat.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add packages/tor-browsers.scm.
* gnu/packages/gnupg.scm: Remove fix for dependency loop (fixed because we use
a new file).
* gnu/packages/tor-browsers.scm (mozilla-locale, mozilla-locales,
%torbrowser-locales, %moz-build-date, %torbrowser-version,
%torbrowser-firefox-version, translation-base-browser,
translation-tor-browser, torbrowser-assets, torbrowser): New variables.
(make-torbrowser): New procedure, which is a merge of ‘make-torbrowser’ (from
tor.scm) with ‘icecat-minimal’ (from gnuzilla.scm).
* gnu/packages/tor.scm (%moz-build-date, %torbrowser-version,
%torbrowser-firefox-version, %torbrowser-locales, translation-base-browser,
translation-tor-browser, torbrowser-assets, torbrowser): Remove variables.

Change-Id: I5fcf73e53fe4481a18e13cdeb3515c3dc4430090
2024-02-02 12:00:44 +01:00
Sharlatan Hellseher 376bba6030
gnu: Add (gnu packages golang-xyz) module.
* gnu/packages/golang-xyz.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-xyz.scm scope.

Change-Id: I25e434de1adc29c2f08146f040755287c63632d6
2024-01-30 22:58:22 +00:00
Ricardo Wurmus a4e75305e2
gnu: r-sapa: Patch call of dstebz routine.
* gnu/packages/patches/r-sapa-lapack.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sapa)[source]: Add it.

Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105
2024-01-30 15:16:20 +01:00
Maxim Cournoyer 2c5293afff
gnu: lugaru: Apply patch fixing sound.
* gnu/packages/patches/lugaru-fix-sound.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (lugaru) [source]: Update source URL.
Apply patch.
[arguments]: Use gexps.
[inputs]: Remove labels and sort.

Change-Id: Iebefc9fc43d3473e51c8c732539e6aa2f14d9f5f
2024-01-28 21:03:31 -05:00
Sharlatan Hellseher e3942c7589
gnu: Add (gnu packages golang-crypto) module.
* gnu/packages/golang-crypto.scm: New file.
* gnu/local.mk: Add to gnu/packages/golang-crypto.scm scope.

Change-Id: I92a110f31a74c5a54c59ee2a0f17373915be1b35
2024-01-28 23:21:02 +00:00
Giacomo Leidi 2f67528edd
home: Add home-dotfiles-service.
* gnu/home/service/dotfiles.scm: New file;
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* po/guix/POTFILES.in: Add it.
* doc/guix.texi (Essential Home Services): Document it.

Change-Id: I6769169cfacefc3842faa5b31bee081c56c28743
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2024-01-28 22:50:49 +01:00
Michal Atlas 78bdf4f999
gnu: Add cl-rpcq.
* gnu/packages/quantum.scm: New file.
  (cl-rpcq, sbcl-rpcq): New variables.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register "quantum.scm".

Change-Id: Ic893ad22ffb7a3bf9aa5e841fcf4c14bf3a23b2f
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2024-01-28 16:15:41 +01:00
Andreas Enge ff9d8420cf
gnu: python-flint: Update to 0.5.0 and build with flint@3.
* gnu/packages/patches/python-flint-includes.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister file.
* gnu/packages/algebra.scm (python-flint): Update to 0.5.0.
[source]: Drop patch.
[inputs]: Drop arb.
[native-inputs]: Use python-cython-3.

Change-Id: I5fa9b201efff76e16f957aee0ebcd453ea823e69
2024-01-26 10:09:35 +01:00
Andreas Enge f027a6c22c
gnu: s7: Compile with flint@3.
* gnu/packages/patches/s7-flint-3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register file.
* gnu/packages/lisp.scm (s7-bootstrap)[source]: Add patch.
[inputs]: Remove arb.

Change-Id: I06bac9d850977b8ee769e629f1b64411a8dc3247
2024-01-26 10:09:35 +01:00
Efraim Flashner da3e6aea0a
gnu: range-v3: Update to 0.12.0.
* gnu/packages/cpp.scm (range-v3): Update to 0.12.0.
[source]: Remove patch.
* gnu/packages/patches/range-v3-build-with-gcc10.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Change-Id: I078937f9aff0da31ede8d472d8739e48bb775c55
2024-01-24 19:15:30 +02:00
Maxim Cournoyer e479920cfd
gnu: emacs-yasnippet: Update to 0.14.0-0.297546f.
* gnu/packages/emacs-xyz.scm (emacs-yasnippet): Update to 0.14.0-0.297546f.
Remove fix-tests patch.
* gnu/packages/patches/emacs-yasnippet-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.

Change-Id: I3fda2bb3d879d88f06f9d814b6c8d835d9eafc9f
2024-01-24 10:42:42 -05:00
Nicolas Goaziou 9b65b60b97
gnu: notmuch: Update to 0.38.2.
* gnu/packages/mail.scm (notmuch): Update to 0.38.2.
* gnu/packages/patches/notmuch-emacs-test-output.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Apply file deletion.

Change-Id: I60d0487f2258ed5ef8602de7a624686c5f012a4f
2024-01-22 09:32:57 +01:00
Maxim Cournoyer d6170e03e3
gnu: emacs-shx: Fix test failure.
* gnu/packages/patches/emacs-shx-byte-compilation-test.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs-xyz.scm (emacs-shx): Apply it.

Change-Id: I6d8edd3b50f99f1c4cd495216caf9648dfee4ea3
2024-01-19 15:05:53 -05:00
Maxim Cournoyer 33f12b7dcd
gnu/local.mk: Sort Emacs patches and fix 2044 year in copyright notice.
* gnu/local.mk: Correct 2044 copyright year.
(dist_patch_DATA): Sort emacs patches.

Change-Id: Ib9669bb1d7fb2556d6d809d62624981fa66d27f3
2024-01-19 15:05:53 -05:00
Herman Rimm 3e3975275b
gnu: u-boot: Update to 2024.01.
* gnu/packages/bootloaders.scm (u-boot): Update to 2024.01.
[source]: Remove patman patch, add build-without-libcrypto patch.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Remove
upstreamed diffs.
* gnu/packages/patches/u-boot-build-without-libcrypto.patch: Add file.
* gnu/packages/patches/u-boot-patman-change-id.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Add patch, remove patch.

Change-Id: I5a21d4cd645449ff669f17cdabe5313870bec46f
Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
2024-01-18 10:18:00 -08:00
Ricardo Wurmus b8085c9240
gnu: python-pyls-black: Fix build.
* gnu/packages/patches/python-pyls-black-41.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-pyls-black)[source]: Add patch.
[build-system]: Use pyproject-build-system.
[arguments]: Disable one failing test.

Change-Id: I14b2982644e58c0b43d76838febc6dfceb220b15
2024-01-16 14:52:21 +01:00
Ricardo Wurmus 65d021a950
gnu: python-scikit-bio: Update to 0.5.9.
* gnu/packages/bioinformatics.scm (python-scikit-bio): Update to 0.5.9.
[source]: Add patch.
[arguments]: Disable one test via #:test-flags; adjust 'compatibility phase;
update 'check phase.
[propagated-inputs]: Remove python-cachecontrol, python-lockfile, and
python-scikit-learn; add python-requests.
* gnu/packages/patches/python-scikit-bio-1887.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: Ie57b0256cf695e5ea088545cd2102335303a93e7
2024-01-16 12:44:37 +01:00
Jack Hill ef270f9d73
gnu: openssh: Fix build on ppc64le.
* gnu/packages/ssh.scm (openssh)[source]:
Use 'openssh-gcc-13-ppc64le-fzero-call-used-regs.patch'.
* gnu/packages/patches/openssh-gcc-13-ppc64le-fzero-call-used-regs.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Reported-by: Marcel van der Boom <marcel@van-der-boom.nl>.

Change-Id: I41b1350b2cdd1487a8fd69b13b64f63c0dc166c9
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-01-14 23:00:04 +01:00
Simon South 3351c5e59d
gnu: unknown-horizons: Fix build and runtime errors.
Apply two upstream commits that allow building with Python 3.9 or newer and
running with Python 3.10.

* gnu/packages/patches/unknown-horizons-python-3.9.patch: New file.
* gnu/packages/patches/unknown-horizons-python-3.10.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/games.scm (unknown-horizons)[source]: Apply them.

Change-Id: Icbc8b698b913be01465b09ab26afb29e5fd62a87
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
Fixes: Unknown Horizons fails to start <https://bugs.gnu.org/54815>
2024-01-14 10:02:07 +01:00
Simon South e7823dbe8c
gnu: fifengine: Fix runtime error when using Python 3.9 or newer.
* gnu/packages/patches/fifengine-python-3.9-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/games.scm (fifengine)[source]: Apply it.

Change-Id: I61001d6b87db00c71f1e2e6ca3bac8581e941451
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2024-01-14 10:01:59 +01:00
Guillaume Le Vaillant 24f000a49a
Merge branch 'lisp-team'
Change-Id: I4ec6ad695392c76c389224255477819fa686eecb
2024-01-11 16:49:24 +01:00
Guillaume Le Vaillant f122f2bead
gnu: sbcl: Fix riscv build.
* gnu/packages/patches/sbcl-fix-riscv-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/lisp.scm (sbcl)[source]: Use it.

Change-Id: I63f1b9a7a7b6f3a1961d0a0cb31189b74a60abc3
2024-01-10 22:57:43 +01:00
Ricardo Wurmus fc891f004a
gnu: openjdk10: Fix time bomb in ‘GenerateCurrencyData.java’.
Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f424.

* gnu/packages/java.scm (openjdk10)[source]: Add patch.
* gnu/packages/patches/openjdk-currency-time-bomb2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I42fc14d305883f672cd6764a0ee6462852e41a5b
2024-01-10 22:09:49 +01:00
Ricardo Wurmus a252ab6f88
gnu: Fix patch location.
This is a follow-up to commit db7488a7fb.

* gnu/local.mk (dist_patch_DATA): Restore "packages/" prefix.

Change-Id: I1f8e420e75c3f4e1927dac935c2de337fd1306eb
2024-01-10 22:07:57 +01:00
Ricardo Wurmus db7488a7fb
gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’.
Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f424.

* gnu/packages/java.scm (openjdk9)[source]: Add patch.
* gnu/packages/patches/openjdk-currency-time-bomb.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55
2024-01-10 21:52:33 +01:00
Ludovic Courtès 5c0f77f424
gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’.
Fixes <https://issues.guix.gnu.org/68333>.

* gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’
parameter and honor it.
[native-inputs]: Add patch for “jdk-drop”.
(icedtea-8): Likewise.
* gnu/packages/patches/jdk-currency-time-bomb.patch,
gnu/packages/patches/jdk-currency-time-bomb2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8
2024-01-10 16:42:03 +01:00
Guillaume Le Vaillant 749c3e016a
Merge branch 'master' into lisp-team
Change-Id: I6c2ce53e782a00861c3adf01c2505099daef7728
2024-01-10 14:04:40 +01:00
Maxim Cournoyer 8237f4e997
gnu: jami: Update to 20231222.2.
* gnu/packages/jami.scm (%jami-version): Rename to...
(%jami-nightly-version): ... this.  Update to 20231222.2.
(%jami-daemon-commit): New variable.
(%jami-sources): Delete variable.
(libjami) Adjust source to use %jami-nightly-version, %jami-daemon-commit.
[source]: Fetch from git.  Apply libjami-ac-config-files.patch.
[arguments] <make-flags>: Skip ut_media_player test.
<phases>: Add extend-scheduler-test-timeout and extend-scheduler-test-timeout
phases.
[inputs]: Replace dbus-c++ with sdbus-c++.
Add dhtnet.  Replace libgit2 with libgit2-1.6.
(jami): Set version to %jami-nightly-version.
[source]: Fetch from git.  Apply new jami-qml-tests-discovery.patch,
jami-skip-tests-requiring-internet.patch and jami-unbundle-dependencies.patch
patches.
[arguments] <configure-flags>: Add -DWITH_DAEMON_SUBMODULE=OFF.
<phases>: Delete change-directory/maybe.
Adjust check phase.  Add fake-x11-environment,
copy-3rdparty-source-dependencies and disable-problematic-tests phases.
[inputs]: Add md4c and tidy-html.
* gnu/packages/patches/jami-qml-tests-discovery.patch: New file.
* gnu/packages/patches/libjami-ac-config-files.patch: Likewise.
* gnu/packages/patches/jami-skip-tests-requiring-internet.patch: Likewise.
* gnu/packages/patches/jami-unbundle-dependencies.patch: Likewise.
* gnu/packages/patches/jami-libjami-headers-search.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/patches/jami-disable-integration-tests.patch: Adjust patch.

Series-changes: 2
 - Update Jami to latest nightly version (20231222.2)

Change-Id: If30f1178bdfa29c4ea3e54dbb7997e360788adae
2024-01-09 22:10:13 -05:00