85c2a802f9
gnu: r-annaffy: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.66.0.
2021-11-07 22:34:46 +00:00
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gnu: r-mlinterfaces: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.74.0.
2021-11-07 22:34:46 +00:00
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gnu: r-clusterexperiment: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.14.0.
2021-11-07 22:34:46 +00:00
2e9821cd11
gnu: r-clusterprofiler: Update to 4.2.0.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.0.
2021-11-07 22:34:46 +00:00
498f45bcad
gnu: r-enrichplot: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.1.
[propagated-inputs]: Remove r-cowplot; add r-aplot and r-yulab-utils.
2021-11-07 22:34:46 +00:00
9b6dee4c0d
gnu: r-dose: Update to 3.20.0.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.0.
2021-11-07 22:34:46 +00:00
6dbc856518
gnu: r-fgsea: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.20.0.
2021-11-07 22:34:46 +00:00
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gnu: r-fcscan: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.8.0.
[propagated-inputs]: Add r-doparallel and r-foreach.
2021-11-07 22:34:46 +00:00
7ac356d337
gnu: r-sigpathway: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.62.0.
2021-11-07 22:34:46 +00:00
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gnu: r-anota: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-anota): Update to 1.42.0.
2021-11-07 22:34:46 +00:00
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gnu: r-gosemsim: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.20.0.
2021-11-07 22:34:46 +00:00
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gnu: r-heatplus: Update to 3.2.0.
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* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.2.0.
2021-11-07 22:34:46 +00:00
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gnu: r-varianttools: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.36.0.
2021-11-07 22:34:46 +00:00
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gnu: r-tradeseq: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.8.0.
[propagated-inputs]: Remove r-monocle; add r-mass and r-trajectoryutils.
2021-11-07 22:34:46 +00:00
06c89769c6
gnu: r-ioniser: Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.18.0.
2021-11-07 22:34:46 +00:00
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gnu: r-linnorm: Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.18.0.
2021-11-07 22:34:45 +00:00
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gnu: r-lumi: Update to 2.46.0.
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* gnu/packages/bioconductor.scm (r-lumi): Update to 2.46.0.
2021-11-07 22:34:45 +00:00
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gnu: r-methylumi: Update to 2.40.1.
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* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.40.1.
[propagated-inputs]: Add r-genomicfeatures.
2021-11-07 22:34:45 +00:00
74ea385c8a
gnu: r-minfi: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-minfi): Update to 1.40.0.
2021-11-07 22:34:45 +00:00
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gnu: r-bumphunter: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.36.0.
2021-11-07 22:34:45 +00:00
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gnu: r-siggenes: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.68.0.
2021-11-07 22:34:45 +00:00
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gnu: r-illuminaio: Update to 0.36.0.
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* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.36.0.
2021-11-07 22:34:45 +00:00
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gnu: r-geoquery: Update to 2.62.0.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.0.
[propagated-inputs]: Add r-data-table.
2021-11-07 22:34:45 +00:00
cf5a3022c9
gnu: r-scone: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-scone): Update to 1.18.0.
2021-11-07 22:34:45 +00:00
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gnu: r-scdd: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-scdd): Update to 1.18.0.
2021-11-07 22:34:45 +00:00
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gnu: r-noiseq: Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.38.0.
2021-11-07 22:34:45 +00:00
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gnu: r-monocle: Update to 2.22.0.
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* gnu/packages/bioconductor.scm (r-monocle): Update to 2.22.0.
2021-11-07 22:34:45 +00:00
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gnu: r-mast: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-mast): Update to 1.20.0.
2021-11-07 22:34:45 +00:00
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gnu: r-batchelor: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.10.0.
2021-11-07 22:34:44 +00:00
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gnu: r-residualmatrix: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.4.0.
2021-11-07 22:34:44 +00:00
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
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gnu: r-ihw: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-ihw): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
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gnu: r-lpsymphony: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
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gnu: r-karyoploter: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.0.
2021-11-07 22:34:44 +00:00
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* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.34.0.
2021-11-07 22:34:44 +00:00
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gnu: r-dnacopy: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.68.0.
2021-11-07 22:34:44 +00:00
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gnu: r-copynumber: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.34.0.
2021-11-07 22:34:44 +00:00
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gnu: r-chipexoqual: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.18.0.
2021-11-07 22:34:44 +00:00
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gnu: r-savr: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-savr): Update to 1.32.0.
2021-11-07 22:34:44 +00:00
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gnu: r-biocsingular: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.10.0.
2021-11-07 22:34:44 +00:00
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gnu: r-metapod: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-metapod): Update to 1.2.0.
2021-11-07 22:34:44 +00:00
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gnu: r-ggtree: Update to 3.2.0.
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* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.0.
2021-11-07 22:34:44 +00:00
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gnu: r-treeio: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.0.
2021-11-07 22:34:44 +00:00
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gnu: r-scaledmatrix: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.2.0.
2021-11-07 22:34:43 +00:00
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gnu: r-biocneighbors: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.12.0.
2021-11-07 22:34:43 +00:00
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gnu: r-ruvseq: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
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gnu: r-dnabarcodes: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
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gnu: r-inspect: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
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gnu: r-plgem: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-plgem): Update to 1.66.0.
2021-11-07 22:34:43 +00:00
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gnu: r-rots: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.22.0.
2021-11-07 22:34:43 +00:00
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gnu: r-glimma: Update to 2.4.0.
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* gnu/packages/bioconductor.scm (r-glimma): Update to 2.4.0.
2021-11-07 22:34:43 +00:00
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gnu: r-goseq: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-goseq): Update to 1.46.0.
2021-11-07 22:34:43 +00:00
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gnu: r-ctc: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-ctc): Update to 1.68.0.
2021-11-07 22:34:43 +00:00
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gnu: r-genomicinteractions: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
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gnu: r-interactionset: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.22.0.
2021-11-07 22:34:43 +00:00
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gnu: r-riboseqr: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
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gnu: r-riboprofiling: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
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gnu: r-chipcomp: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
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gnu: r-bayseq: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.28.0.
2021-11-07 22:34:42 +00:00
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gnu: r-qdnaseq: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.30.0.
[propagated-inputs]: Remove r-future.
2021-11-07 22:34:42 +00:00
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gnu: r-cghcall: Update to 2.56.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.56.0.
2021-11-07 22:34:42 +00:00
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gnu: r-cghbase: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.54.0.
2021-11-07 22:34:42 +00:00
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gnu: r-marray: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.72.0.
2021-11-07 22:34:42 +00:00
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gnu: r-matrixgenerics: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.6.0.
2021-11-07 22:34:42 +00:00
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gnu: r-chippeakanno: Update to 3.28.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.0.
2021-11-07 22:34:42 +00:00
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gnu: r-graph: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.72.0.
2021-11-07 22:34:42 +00:00
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gnu: r-multtest: Update to 2.50.0.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.50.0.
2021-11-07 22:34:42 +00:00
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gnu: r-mbkmeans: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.10.0.
2021-11-07 22:34:42 +00:00
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gnu: r-diffbind: Update to 3.4.0.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.0.
2021-11-07 22:34:42 +00:00
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gnu: r-greylistchip: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.26.0.
2021-11-07 22:34:42 +00:00
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gnu: r-apeglm: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.16.0.
2021-11-07 22:34:42 +00:00
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gnu: r-qvalue: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.26.0.
2021-11-07 22:34:42 +00:00
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gnu: r-oligo: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-oligo): Update to 1.58.0.
2021-11-07 22:34:42 +00:00
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gnu: r-oligoclasses: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.56.0.
2021-11-07 22:34:41 +00:00
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gnu: r-geneplotter: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.72.0.
2021-11-07 22:34:41 +00:00
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gnu: r-zlibbioc: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.40.0.
2021-11-07 22:34:41 +00:00
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gnu: r-xvector: Update to 0.34.0.
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* gnu/packages/bioconductor.scm (r-xvector): Update to 0.34.0.
2021-11-07 22:34:41 +00:00
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gnu: r-vsn: Update to 3.62.0.
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* gnu/packages/bioconductor.scm (r-vsn): Update to 3.62.0.
2021-11-07 22:34:41 +00:00
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gnu: r-variantannotation: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.40.0.
2021-11-07 22:34:41 +00:00
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gnu: r-tximport: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-tximport): Update to 1.22.0.
2021-11-07 22:34:41 +00:00
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gnu: r-topgo: Update to 2.46.0.
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* gnu/packages/bioconductor.scm (r-topgo): Update to 2.46.0.
2021-11-07 22:34:41 +00:00
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gnu: r-systempiper: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
2021-11-07 22:34:41 +00:00
c3d9b4b097
gnu: r-sva: Update to 3.42.0.
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* gnu/packages/bioconductor.scm (r-sva): Update to 3.42.0.
2021-11-07 22:34:41 +00:00
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gnu: r-summarizedexperiment: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.24.0.
2021-11-07 22:34:41 +00:00
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gnu: r-structuralvariantannotation: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.0.
2021-11-07 22:34:41 +00:00
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gnu: r-slingshot: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.0.
2021-11-07 22:34:41 +00:00
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gnu: r-trajectoryutils: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.2.0.
2021-11-07 22:34:41 +00:00
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gnu: r-simplifyenrichment: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.4.0.
2021-11-07 22:34:41 +00:00
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gnu: r-shortread: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-shortread): Update to 1.52.0.
2021-11-07 22:34:40 +00:00
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gnu: r-seqpattern: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
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gnu: r-seqlogo: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.60.0.
2021-11-07 22:34:40 +00:00
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gnu: r-rtracklayer: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.54.0.
2021-11-07 22:34:40 +00:00
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gnu: r-rsamtools: Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.10.0.
2021-11-07 22:34:40 +00:00
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gnu: r-rhdf5filters: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.6.0.
2021-11-07 22:34:40 +00:00
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gnu: r-rhdf5: Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.0.
2021-11-07 22:34:40 +00:00
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gnu: r-reportingtools: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.34.0.
2021-11-07 22:34:40 +00:00
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gnu: r-regioner: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
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gnu: r-rcas: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-rcas): Update to 1.20.0.
2021-11-07 22:34:40 +00:00
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gnu: r-rbgl: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.70.0.
2021-11-07 22:34:40 +00:00
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gnu: r-protgenerics: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.26.0.
2021-11-07 22:34:40 +00:00
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gnu: r-pcamethods: Update to 1.86.0.
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* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.86.0.
2021-11-07 22:34:40 +00:00
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gnu: r-organismdbi: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.36.0.
2021-11-07 22:34:40 +00:00
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gnu: r-mzr: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-mzr): Update to 2.28.0.
2021-11-07 22:34:39 +00:00
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gnu: r-mzid: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-mzid): Update to 1.32.0.
2021-11-07 22:34:39 +00:00
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gnu: r-msnid: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-msnid): Update to 1.28.0.
2021-11-07 22:34:39 +00:00
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gnu: r-msnbase: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.0.
2021-11-07 22:34:39 +00:00
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gnu: r-mutationalpatterns: Update to 3.4.0.
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* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.0.
[propagated-inputs]: Add r-rcolorbrewer.
2021-11-07 22:34:39 +00:00
d4a0101ad9
gnu: r-methylkit: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.20.0.
2021-11-07 22:34:39 +00:00
0465cc8251
gnu: r-limma: Update to 3.50.0.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.0.
2021-11-07 22:34:39 +00:00
a0cc78a554
gnu: r-keggrest: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.34.0.
2021-11-07 22:34:39 +00:00
1fa012822d
gnu: r-interactivedisplaybase: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.32.0.
2021-11-07 22:34:39 +00:00
b6bd74cefb
gnu: r-impute: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-impute): Update to 1.68.0.
2021-11-07 22:34:39 +00:00
eeeb38d569
gnu: r-rhtslib: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.26.0.
2021-11-07 22:34:39 +00:00
bcd10420cc
gnu: r-hpar: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.36.0.
2021-11-07 22:34:39 +00:00
df5553ee14
gnu: r-gseabase: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.56.0.
2021-11-07 22:34:39 +00:00
8148c6ba72
gnu: r-gostats: Update to 2.60.0.
...
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.60.0.
2021-11-07 22:34:39 +00:00
98c8e7f735
gnu: r-genomicranges: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.0.
2021-11-07 22:34:39 +00:00
36ea351603
gnu: r-genomicfiles: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
60d5b89717
gnu: r-genomicfeatures: Update to 1.46.1.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.1.
2021-11-07 22:34:38 +00:00
f599ef1cc4
gnu: r-genomicalignments: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
9122892ec9
gnu: r-genomeinfodb: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
251e6950d8
gnu: r-genomation: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.26.0.
2021-11-07 22:34:38 +00:00
38d13a6747
gnu: r-geneoverlap: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
7e80f6fb57
gnu: r-genefilter: Update to 1.76.0.
...
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.76.0.
2021-11-07 22:34:38 +00:00
3a2cab95b1
gnu: r-gage: Update to 2.44.0.
...
* gnu/packages/bioconductor.scm (r-gage): Update to 2.44.0.
2021-11-07 22:34:38 +00:00
309e04ba18
gnu: r-fastseg: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.40.0.
2021-11-07 22:34:38 +00:00
7973617595
gnu: r-ensembldb: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.0.
2021-11-07 22:34:38 +00:00
46663d5769
gnu: r-edger: Update to 3.36.0.
...
* gnu/packages/bioconductor.scm (r-edger): Update to 3.36.0.
2021-11-07 22:34:38 +00:00
933366ffe7
gnu: r-edaseq: Update to 2.28.0.
...
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.28.0.
2021-11-07 22:34:38 +00:00
de8089a767
gnu: r-dirichletmultinomial: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.36.0.
2021-11-07 22:34:38 +00:00
cb87707987
gnu: r-dexseq: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.40.0.
2021-11-07 22:34:38 +00:00
87db919dbb
gnu: r-deseq2: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.34.0.
2021-11-07 22:34:38 +00:00
f34bcc5c6b
gnu: r-copywriter: Update to 2.26.0.
...
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.26.0.
2021-11-07 22:34:37 +00:00
e5d90645ea
gnu: r-complexheatmap: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.10.0.
[propagated-inputs]: Remove r-cairo.
2021-11-07 22:34:37 +00:00
126a4b6c9d
gnu: r-chipseq: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.44.0.
2021-11-07 22:34:37 +00:00
cd7c1e2c3e
gnu: r-chipseeker: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.0.
2021-11-07 22:34:37 +00:00
395e9ab420
gnu: r-category: Update to 2.60.0.
...
* gnu/packages/bioconductor.scm (r-category): Update to 2.60.0.
2021-11-07 22:34:37 +00:00
a6b83bd30d
gnu: r-bsgenome: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.62.0.
2021-11-07 22:34:37 +00:00
eea602cdbb
gnu: r-biovizbase: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.42.0.
2021-11-07 22:34:37 +00:00
7851f7f2c6
gnu: r-biostrings: Update to 2.62.0.
...
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.62.0.
2021-11-07 22:34:37 +00:00
d0ceaf62fc
gnu: r-biomart: Update to 2.50.0.
...
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.0.
2021-11-07 22:34:37 +00:00
918c08e20d
gnu: r-biobase: Update to 2.54.0.
...
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.54.0.
2021-11-07 22:34:37 +00:00
e606add2e4
gnu: r-bamsignals: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.26.0.
2021-11-07 22:34:37 +00:00
9efb70c077
gnu: r-aroma-light: Update to 3.24.0.
...
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.24.0.
2021-11-07 22:34:37 +00:00
7f291d0965
gnu: r-annotationhub: Update to 3.2.0.
...
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.0.
2021-11-07 22:34:37 +00:00
c46f294350
gnu: r-annotationforge: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.36.0.
2021-11-07 22:34:37 +00:00
0e31c0034a
gnu: r-annotationfilter: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.18.0.
2021-11-07 22:34:36 +00:00
eccd328684
gnu: r-annotationdbi: Update to 1.56.1.
...
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.1.
2021-11-07 22:34:36 +00:00
eee1bc786a
gnu: r-annotate: Update to 1.72.0.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.72.0.
2021-11-07 22:34:36 +00:00
5b63db8f83
gnu: r-affxparser: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.66.0.
2021-11-07 22:34:36 +00:00
5de927226c
gnu: r-affyio: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.64.0.
2021-11-07 22:34:36 +00:00
5ab6e9e100
gnu: r-affycoretools: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.66.0.
2021-11-07 22:34:36 +00:00
21b5db3f1e
gnu: r-affycontam: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.52.0.
2021-11-07 22:34:36 +00:00
71f58a16ae
gnu: r-affycompatible: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.54.0.
2021-11-07 22:34:36 +00:00
a610856e88
gnu: r-affycomp: Update to 1.70.0.
...
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.70.0.
2021-11-07 22:34:36 +00:00
1a4e10d555
gnu: r-affy: Update to 1.72.0.
...
* gnu/packages/bioconductor.scm (r-affy): Update to 1.72.0.
2021-11-07 22:34:36 +00:00
a85e744c3d
gnu: r-iranges: Update to 2.28.0.
...
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.28.0.
2021-11-07 22:34:36 +00:00
1acf3f1821
gnu: r-ideoviz: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.30.0.
2021-11-07 22:34:36 +00:00
b0a2fc9253
gnu: r-bluster: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.4.0.
2021-11-07 22:34:36 +00:00
35ccf99fff
gnu: r-delayedarray: Update to 0.20.0.
...
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.20.0.
2021-11-07 22:34:35 +00:00
7cc053eaca
gnu: r-deepsnv: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.40.0.
2021-11-07 22:34:35 +00:00
628a8f8c78
gnu: r-decipher: Update to 2.22.0.
...
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.22.0.
2021-11-07 22:34:35 +00:00
07b14e81f9
gnu: r-cummerbund: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.36.0.
2021-11-07 22:34:35 +00:00
9d51c1f423
gnu: r-coverageview: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.32.0.
2021-11-07 22:34:35 +00:00
3622390699
gnu: r-biocgenerics: Update to 0.40.0.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.40.0.
2021-11-07 22:34:35 +00:00
6ed26516bf
gnu: r-biocversion: Update to 3.14.0.
...
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.14.0.
2021-11-07 22:34:35 +00:00
fc0fa7a431
gnu: r-aneufinder: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.22.0.
2021-11-07 22:34:35 +00:00
d1c79f5a2c
gnu: r-biocparallel: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.0.
[arguments]: Adjust build phase to patch renamed file.
2021-11-07 22:34:35 +00:00
4a92ab58f6
gnu: Add r-msfeatures.
...
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
2021-11-07 22:34:34 +00:00
92b85194cd
gnu: r-with-tests: Update patch to DESCRIPTION file.
...
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Patch line breaks and
spaces in DESCRIPTION file to ensure reproducible build.
2021-11-07 22:34:34 +00:00
108111114d
gnu: r-with-tests: Remove trailing #T.
...
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Remove trailing #T
from build phases.
2021-11-07 22:34:34 +00:00
17d0bbef88
gnu: r-with-tests: Update to 4.1.2.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.2.
2021-11-07 22:34:29 +00:00
bd41e590dd
gnu: ardour: Update to 6.9.
...
* gnu/packages/audio.scm (ardour): Update to 6.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-07 23:10:41 +01:00
2f665d4309
doc: Improve documentation of the Bash home service
...
* doc/guix.texi (Shells Home Services): Document ‘home-bash-extension’
configuration record.
* gnu/home/services/shells.scm (generate-home-bash-documentation): Extract
docstrings from ‘home-bash-extension’.
(home-bash-configuration): Expound on docstrings.
(home-bash-extension): Likewise.
Fixes: <https://issues.guix.gnu.org/50991 >
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-07 23:10:41 +01:00
4b96998292
home: services: bash: Add ‘aliases’ field.
...
* doc/guix.texi (Shells Home Services): Document it.
* gnu/home/services/shells.scm (bash-serialize-aliases): New procedure.
(home-bash-configuration, home-bash-extension): Add ‘aliases’ field.
(home-bash-extensions): Adjust accordingly.
* guix/scripts/home/import.scm (generate-bash-configuration+modules): Populate
the ‘alias’ field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-07 23:10:41 +01:00
5eb5c0789f
file-systems: Validate the 'flags' field.
...
Fixes <https://issues.guix.gnu.org/51425 >.
Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>.
* gnu/system/file-systems.scm (invalid-file-system-flags)
(%validate-file-system-flags): New procedures.
(validate-file-system-flags): New macro.
(<file-system>)[flags]: Add 'sanitize' property.
2021-11-07 23:10:41 +01:00
dab2ac2ed5
gnu: 0ad: Update to 0.0.25b-alpha.
...
* gnu/packages/games.scm (0ad-data): Update to 0.0.25b-alpha.
Unpack .zip files without need for a snippet.
(0ad): Update to 0.0.25b-alpha.
[arguments]<#:phases>: Properly unbundle cxxtest. Respect #:tests?.
Install Freedesktop mimeinfo.
Install icon to hicolor theme instead of share/pixmaps, which I don't
think is used.
<#:tests> Disable tests for now since they don't run.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-07 22:57:05 +01:00
90cd653abe
gnu: ansible-core: Update to 2.11.6.
...
* gnu/packages/admin.scm (ansible-core): Update to 2.11.6.
2021-11-07 22:52:43 +01:00
031906be76
gnu: xfstests: Update to 1.1.0-1.bae1d15.
...
* gnu/packages/file-systems.scm (xfstests): Update to 1.1.0-1.bae1d15.
2021-11-07 22:52:43 +01:00
6a36f4e4fc
gnu: lv2: Update to 1.18.2.
...
* gnu/packages/audio.scm (lv2): Update to 1.18.2.
2021-11-07 22:52:43 +01:00
c569c735c2
gnu: jalv: Update to 1.6.6.
...
* gnu/packages/audio.scm (jalv): Update to 1.6.6.
2021-11-07 22:52:43 +01:00
b331ee62f5
gnu: lilv: Update to 0.24.12.
...
* gnu/packages/audio.scm (lilv): Update to 0.24.12.
[arguments]: Don't explicitly return #t from phases.
2021-11-07 22:52:42 +01:00
55bef80580
gnu: dvdisaster: Remove uninstallation script.
...
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add a new
'remove-uninstall-script phase.
2021-11-07 22:52:42 +01:00
153d9bca72
gnu: dvdisaster: Update to 0.79.9.
...
* gnu/packages/cdrom.scm (dvdisaster): Update to 0.79.9.
[source, home-page]: Update home page.
[arguments]: Don't explicitly return #t from phases.
2021-11-07 22:52:42 +01:00
92af2ec5d0
gnu: openttd: Fix build failure.
...
* packages/games.scm (openttd)[native-inputs]: Use gcc-9 to fix build
failure.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:37 +01:00
c9b9919858
gnu: openttd-openmsx: Update to 0.4.2.
...
* packages/games.scm (openttd-openmsx): Update to 0.4.2.
[native-inputs]: Replace python-2 with python-wrapper.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:37 +01:00
574f4b7d3f
gnu: openttd-opensfx: Update to 1.0.2.
...
* packages/games.scm (openttd-opensfx): Update to 1.0.2.
[native-inputs]: Replace python-2 with python.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:37 +01:00
c2759211fc
gnu: openttd-opengfx: Update to 7.1.
...
* packages/games.scm (openttd-opengfx): Update to 7.1.
[native-inputs]: Replace python-2 with python.
[arguments]: Use cc-for-target.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:36 +01:00
b6bb7720eb
gnu: openttd-engine: Update to 12.0.
...
* gnu/packages/games.scm (openttd-engine): Update engine to 12.0.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:36 +01:00
2ebadb390e
gnu: Add weechat-wee-slack.
...
* gnu/packages/messaging.scm (weechat-wee-slack): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:58:03 +02:00
7ebed0cdc8
gnu: Add weechat-matrix.
...
* gnu/packages/messaging.scm (weechat-matrix): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:50:32 +02:00
73679a6837
gnu: Add python-webcolors.
...
* gnu/packages/python-web.scm (python-webcolors): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:50:27 +02:00
6e3eba9d1f
gnu: Add rust-log4rs-1.
...
* gnu/packages/crates-io.scm (rust-log4rs-1): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:48 +02:00
b76b29957e
gnu: Add rust-log-mdc-0.1.
...
* gnu/packages/crates-io.scm (rust-log-mdc-0.1): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:46 +02:00
e9eb6b1102
gnu: Add rust-diffus-0.10.
...
* gnu/packages/crates-io.scm (rust-diffus-0.10): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:44 +02:00
38912f139f
gnu: Add rust-diffus-derive-0.10.
...
* gnu/packages/crates-io.scm (rust-diffus-derive-0.10): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:43 +02:00
551e39ccb1
gnu: Add rust-snake-case-0.3.
...
* gnu/packages/crates-io.scm (rust-snake-case-0.3): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:41 +02:00
cd968c83aa
gnu: Add rust-xmltree-0.10.
...
* gnu/packages/crates-io.scm (rust-xmltree-0.10): New variable.
(rust-xmltree-0.8): Inherit from above.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:39 +02:00
9bf3bc8418
gnu: Add rust-color-backtrace-0.5.
...
* gnu/packages/crates-io.scm (rust-color-backtrace-0.5): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:37 +02:00
3e6f857354
gnu: x42-plugins: Prepare for cross-compiling.
...
* gnu/packages/music.scm (x42-plugins)[arguments]: Remove
'set-CC-variable phase. Use cc-for-target in make-flags.
2021-11-07 22:25:23 +02:00
Ricardo Wurmus
Thorsten Wilms
Xinglu Chen
Ludovic Courtès
Brendan Tildesley
Tobias Geerinckx-Rice
Felix Gruber
Arun Isaac
Vinicius Monego
Efraim Flashner