78fd768566
gnu: r-pcamethods: Update to 1.86.0.
...
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.86.0.
2021-11-07 22:34:40 +00:00
ada8646a38
gnu: r-organismdbi: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.36.0.
2021-11-07 22:34:40 +00:00
3de4beb013
gnu: r-mzr: Update to 2.28.0.
...
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.28.0.
2021-11-07 22:34:39 +00:00
62d157a2e2
gnu: r-mzid: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.32.0.
2021-11-07 22:34:39 +00:00
a6402a7fee
gnu: r-msnid: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.28.0.
2021-11-07 22:34:39 +00:00
35e1bdc5b8
gnu: r-msnbase: Update to 2.20.0.
...
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.0.
2021-11-07 22:34:39 +00:00
b96f76aff0
gnu: r-mutationalpatterns: Update to 3.4.0.
...
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.0.
[propagated-inputs]: Add r-rcolorbrewer.
2021-11-07 22:34:39 +00:00
d4a0101ad9
gnu: r-methylkit: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.20.0.
2021-11-07 22:34:39 +00:00
0465cc8251
gnu: r-limma: Update to 3.50.0.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.0.
2021-11-07 22:34:39 +00:00
a0cc78a554
gnu: r-keggrest: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.34.0.
2021-11-07 22:34:39 +00:00
1fa012822d
gnu: r-interactivedisplaybase: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.32.0.
2021-11-07 22:34:39 +00:00
b6bd74cefb
gnu: r-impute: Update to 1.68.0.
...
* gnu/packages/bioconductor.scm (r-impute): Update to 1.68.0.
2021-11-07 22:34:39 +00:00
eeeb38d569
gnu: r-rhtslib: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.26.0.
2021-11-07 22:34:39 +00:00
bcd10420cc
gnu: r-hpar: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.36.0.
2021-11-07 22:34:39 +00:00
df5553ee14
gnu: r-gseabase: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.56.0.
2021-11-07 22:34:39 +00:00
8148c6ba72
gnu: r-gostats: Update to 2.60.0.
...
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.60.0.
2021-11-07 22:34:39 +00:00
98c8e7f735
gnu: r-genomicranges: Update to 1.46.0.
...
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.0.
2021-11-07 22:34:39 +00:00
36ea351603
gnu: r-genomicfiles: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
60d5b89717
gnu: r-genomicfeatures: Update to 1.46.1.
...
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.1.
2021-11-07 22:34:38 +00:00
f599ef1cc4
gnu: r-genomicalignments: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
9122892ec9
gnu: r-genomeinfodb: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
251e6950d8
gnu: r-genomation: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.26.0.
2021-11-07 22:34:38 +00:00
38d13a6747
gnu: r-geneoverlap: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.30.0.
2021-11-07 22:34:38 +00:00
7e80f6fb57
gnu: r-genefilter: Update to 1.76.0.
...
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.76.0.
2021-11-07 22:34:38 +00:00
3a2cab95b1
gnu: r-gage: Update to 2.44.0.
...
* gnu/packages/bioconductor.scm (r-gage): Update to 2.44.0.
2021-11-07 22:34:38 +00:00
309e04ba18
gnu: r-fastseg: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.40.0.
2021-11-07 22:34:38 +00:00
7973617595
gnu: r-ensembldb: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.0.
2021-11-07 22:34:38 +00:00
46663d5769
gnu: r-edger: Update to 3.36.0.
...
* gnu/packages/bioconductor.scm (r-edger): Update to 3.36.0.
2021-11-07 22:34:38 +00:00
933366ffe7
gnu: r-edaseq: Update to 2.28.0.
...
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.28.0.
2021-11-07 22:34:38 +00:00
de8089a767
gnu: r-dirichletmultinomial: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.36.0.
2021-11-07 22:34:38 +00:00
cb87707987
gnu: r-dexseq: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.40.0.
2021-11-07 22:34:38 +00:00
87db919dbb
gnu: r-deseq2: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.34.0.
2021-11-07 22:34:38 +00:00
f34bcc5c6b
gnu: r-copywriter: Update to 2.26.0.
...
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.26.0.
2021-11-07 22:34:37 +00:00
e5d90645ea
gnu: r-complexheatmap: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.10.0.
[propagated-inputs]: Remove r-cairo.
2021-11-07 22:34:37 +00:00
126a4b6c9d
gnu: r-chipseq: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.44.0.
2021-11-07 22:34:37 +00:00
cd7c1e2c3e
gnu: r-chipseeker: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.0.
2021-11-07 22:34:37 +00:00
395e9ab420
gnu: r-category: Update to 2.60.0.
...
* gnu/packages/bioconductor.scm (r-category): Update to 2.60.0.
2021-11-07 22:34:37 +00:00
a6b83bd30d
gnu: r-bsgenome: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.62.0.
2021-11-07 22:34:37 +00:00
eea602cdbb
gnu: r-biovizbase: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.42.0.
2021-11-07 22:34:37 +00:00
7851f7f2c6
gnu: r-biostrings: Update to 2.62.0.
...
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.62.0.
2021-11-07 22:34:37 +00:00
d0ceaf62fc
gnu: r-biomart: Update to 2.50.0.
...
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.0.
2021-11-07 22:34:37 +00:00
918c08e20d
gnu: r-biobase: Update to 2.54.0.
...
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.54.0.
2021-11-07 22:34:37 +00:00
e606add2e4
gnu: r-bamsignals: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.26.0.
2021-11-07 22:34:37 +00:00
9efb70c077
gnu: r-aroma-light: Update to 3.24.0.
...
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.24.0.
2021-11-07 22:34:37 +00:00
7f291d0965
gnu: r-annotationhub: Update to 3.2.0.
...
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.0.
2021-11-07 22:34:37 +00:00
c46f294350
gnu: r-annotationforge: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.36.0.
2021-11-07 22:34:37 +00:00
0e31c0034a
gnu: r-annotationfilter: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.18.0.
2021-11-07 22:34:36 +00:00
eccd328684
gnu: r-annotationdbi: Update to 1.56.1.
...
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.1.
2021-11-07 22:34:36 +00:00
eee1bc786a
gnu: r-annotate: Update to 1.72.0.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.72.0.
2021-11-07 22:34:36 +00:00
5b63db8f83
gnu: r-affxparser: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.66.0.
2021-11-07 22:34:36 +00:00
5de927226c
gnu: r-affyio: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.64.0.
2021-11-07 22:34:36 +00:00
5ab6e9e100
gnu: r-affycoretools: Update to 1.66.0.
...
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.66.0.
2021-11-07 22:34:36 +00:00
21b5db3f1e
gnu: r-affycontam: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.52.0.
2021-11-07 22:34:36 +00:00
71f58a16ae
gnu: r-affycompatible: Update to 1.54.0.
...
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.54.0.
2021-11-07 22:34:36 +00:00
a610856e88
gnu: r-affycomp: Update to 1.70.0.
...
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.70.0.
2021-11-07 22:34:36 +00:00
1a4e10d555
gnu: r-affy: Update to 1.72.0.
...
* gnu/packages/bioconductor.scm (r-affy): Update to 1.72.0.
2021-11-07 22:34:36 +00:00
a85e744c3d
gnu: r-iranges: Update to 2.28.0.
...
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.28.0.
2021-11-07 22:34:36 +00:00
1acf3f1821
gnu: r-ideoviz: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.30.0.
2021-11-07 22:34:36 +00:00
b0a2fc9253
gnu: r-bluster: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.4.0.
2021-11-07 22:34:36 +00:00
35ccf99fff
gnu: r-delayedarray: Update to 0.20.0.
...
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.20.0.
2021-11-07 22:34:35 +00:00
7cc053eaca
gnu: r-deepsnv: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.40.0.
2021-11-07 22:34:35 +00:00
628a8f8c78
gnu: r-decipher: Update to 2.22.0.
...
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.22.0.
2021-11-07 22:34:35 +00:00
07b14e81f9
gnu: r-cummerbund: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.36.0.
2021-11-07 22:34:35 +00:00
9d51c1f423
gnu: r-coverageview: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.32.0.
2021-11-07 22:34:35 +00:00
3622390699
gnu: r-biocgenerics: Update to 0.40.0.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.40.0.
2021-11-07 22:34:35 +00:00
6ed26516bf
gnu: r-biocversion: Update to 3.14.0.
...
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.14.0.
2021-11-07 22:34:35 +00:00
fc0fa7a431
gnu: r-aneufinder: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.22.0.
2021-11-07 22:34:35 +00:00
d1c79f5a2c
gnu: r-biocparallel: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.0.
[arguments]: Adjust build phase to patch renamed file.
2021-11-07 22:34:35 +00:00
4a92ab58f6
gnu: Add r-msfeatures.
...
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
2021-11-07 22:34:34 +00:00
92b85194cd
gnu: r-with-tests: Update patch to DESCRIPTION file.
...
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Patch line breaks and
spaces in DESCRIPTION file to ensure reproducible build.
2021-11-07 22:34:34 +00:00
108111114d
gnu: r-with-tests: Remove trailing #T.
...
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Remove trailing #T
from build phases.
2021-11-07 22:34:34 +00:00
17d0bbef88
gnu: r-with-tests: Update to 4.1.2.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.2.
2021-11-07 22:34:29 +00:00
bd41e590dd
gnu: ardour: Update to 6.9.
...
* gnu/packages/audio.scm (ardour): Update to 6.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-07 23:10:41 +01:00
2f665d4309
doc: Improve documentation of the Bash home service
...
* doc/guix.texi (Shells Home Services): Document ‘home-bash-extension’
configuration record.
* gnu/home/services/shells.scm (generate-home-bash-documentation): Extract
docstrings from ‘home-bash-extension’.
(home-bash-configuration): Expound on docstrings.
(home-bash-extension): Likewise.
Fixes: <https://issues.guix.gnu.org/50991 >
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-07 23:10:41 +01:00
4b96998292
home: services: bash: Add ‘aliases’ field.
...
* doc/guix.texi (Shells Home Services): Document it.
* gnu/home/services/shells.scm (bash-serialize-aliases): New procedure.
(home-bash-configuration, home-bash-extension): Add ‘aliases’ field.
(home-bash-extensions): Adjust accordingly.
* guix/scripts/home/import.scm (generate-bash-configuration+modules): Populate
the ‘alias’ field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-07 23:10:41 +01:00
5eb5c0789f
file-systems: Validate the 'flags' field.
...
Fixes <https://issues.guix.gnu.org/51425 >.
Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>.
* gnu/system/file-systems.scm (invalid-file-system-flags)
(%validate-file-system-flags): New procedures.
(validate-file-system-flags): New macro.
(<file-system>)[flags]: Add 'sanitize' property.
2021-11-07 23:10:41 +01:00
dab2ac2ed5
gnu: 0ad: Update to 0.0.25b-alpha.
...
* gnu/packages/games.scm (0ad-data): Update to 0.0.25b-alpha.
Unpack .zip files without need for a snippet.
(0ad): Update to 0.0.25b-alpha.
[arguments]<#:phases>: Properly unbundle cxxtest. Respect #:tests?.
Install Freedesktop mimeinfo.
Install icon to hicolor theme instead of share/pixmaps, which I don't
think is used.
<#:tests> Disable tests for now since they don't run.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-07 22:57:05 +01:00
90cd653abe
gnu: ansible-core: Update to 2.11.6.
...
* gnu/packages/admin.scm (ansible-core): Update to 2.11.6.
2021-11-07 22:52:43 +01:00
031906be76
gnu: xfstests: Update to 1.1.0-1.bae1d15.
...
* gnu/packages/file-systems.scm (xfstests): Update to 1.1.0-1.bae1d15.
2021-11-07 22:52:43 +01:00
6a36f4e4fc
gnu: lv2: Update to 1.18.2.
...
* gnu/packages/audio.scm (lv2): Update to 1.18.2.
2021-11-07 22:52:43 +01:00
c569c735c2
gnu: jalv: Update to 1.6.6.
...
* gnu/packages/audio.scm (jalv): Update to 1.6.6.
2021-11-07 22:52:43 +01:00
b331ee62f5
gnu: lilv: Update to 0.24.12.
...
* gnu/packages/audio.scm (lilv): Update to 0.24.12.
[arguments]: Don't explicitly return #t from phases.
2021-11-07 22:52:42 +01:00
55bef80580
gnu: dvdisaster: Remove uninstallation script.
...
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add a new
'remove-uninstall-script phase.
2021-11-07 22:52:42 +01:00
153d9bca72
gnu: dvdisaster: Update to 0.79.9.
...
* gnu/packages/cdrom.scm (dvdisaster): Update to 0.79.9.
[source, home-page]: Update home page.
[arguments]: Don't explicitly return #t from phases.
2021-11-07 22:52:42 +01:00
92af2ec5d0
gnu: openttd: Fix build failure.
...
* packages/games.scm (openttd)[native-inputs]: Use gcc-9 to fix build
failure.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:37 +01:00
c9b9919858
gnu: openttd-openmsx: Update to 0.4.2.
...
* packages/games.scm (openttd-openmsx): Update to 0.4.2.
[native-inputs]: Replace python-2 with python-wrapper.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:37 +01:00
574f4b7d3f
gnu: openttd-opensfx: Update to 1.0.2.
...
* packages/games.scm (openttd-opensfx): Update to 1.0.2.
[native-inputs]: Replace python-2 with python.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:37 +01:00
c2759211fc
gnu: openttd-opengfx: Update to 7.1.
...
* packages/games.scm (openttd-opengfx): Update to 7.1.
[native-inputs]: Replace python-2 with python.
[arguments]: Use cc-for-target.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:36 +01:00
b6bb7720eb
gnu: openttd-engine: Update to 12.0.
...
* gnu/packages/games.scm (openttd-engine): Update engine to 12.0.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-07 22:13:36 +01:00
2ebadb390e
gnu: Add weechat-wee-slack.
...
* gnu/packages/messaging.scm (weechat-wee-slack): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:58:03 +02:00
7ebed0cdc8
gnu: Add weechat-matrix.
...
* gnu/packages/messaging.scm (weechat-matrix): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:50:32 +02:00
73679a6837
gnu: Add python-webcolors.
...
* gnu/packages/python-web.scm (python-webcolors): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:50:27 +02:00
6e3eba9d1f
gnu: Add rust-log4rs-1.
...
* gnu/packages/crates-io.scm (rust-log4rs-1): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:48 +02:00
b76b29957e
gnu: Add rust-log-mdc-0.1.
...
* gnu/packages/crates-io.scm (rust-log-mdc-0.1): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:46 +02:00
e9eb6b1102
gnu: Add rust-diffus-0.10.
...
* gnu/packages/crates-io.scm (rust-diffus-0.10): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:44 +02:00
38912f139f
gnu: Add rust-diffus-derive-0.10.
...
* gnu/packages/crates-io.scm (rust-diffus-derive-0.10): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:43 +02:00
551e39ccb1
gnu: Add rust-snake-case-0.3.
...
* gnu/packages/crates-io.scm (rust-snake-case-0.3): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:41 +02:00
cd968c83aa
gnu: Add rust-xmltree-0.10.
...
* gnu/packages/crates-io.scm (rust-xmltree-0.10): New variable.
(rust-xmltree-0.8): Inherit from above.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:39 +02:00
9bf3bc8418
gnu: Add rust-color-backtrace-0.5.
...
* gnu/packages/crates-io.scm (rust-color-backtrace-0.5): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:28:37 +02:00
3e6f857354
gnu: x42-plugins: Prepare for cross-compiling.
...
* gnu/packages/music.scm (x42-plugins)[arguments]: Remove
'set-CC-variable phase. Use cc-for-target in make-flags.
2021-11-07 22:25:23 +02:00
6f45418416
gnu: x42-plugins: Update to 20211016.
...
* gnu/packages/music.scm (x42-plugins): Update to 20211016.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-07 22:21:20 +02:00
a0f1476e8f
gnu: emacs-stream: Don't set a source file name.
...
This is a follow-up to 678248f5ea
2021-11-07 14:20:41 +01:00
dc8e9d6f88
gnu: osm2pgsql: Update to 1.5.1.
...
* gnu/packages/geo.scm (osm2pgsql): Update to 1.5.1.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-07 10:01:31 +01:00
53bbbfb77c
gnu: protozero: Update to 1.7.0.
...
* gnu/packages/protobuf.scm (protozero): Update to 1.7.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-07 09:59:59 +01:00
b217208dd0
gnu: libosmium: Update to 2.17.1.
...
* gnu/packages/geo.scm (libosmium): Update to 2.17.1.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-11-07 09:56:55 +01:00
b11badfb4c
gnu: webkitgtk: Improve the 32-bit x86 target check.
...
* gnu/packages/webkit.scm (webkitgtk)[arguments]: In the
'prepare-build-environment' phase, use 'target-x86-32?'.
2021-11-07 01:38:59 -04:00
b96ae47bb0
gnu: emacs-geiser-guile: Update to 0.18.
...
* gnu/packages/emacs-xyz.scm (emacs-geiser-guile): Update to 0.18.
[arguments]<#:phases>: Remove trailing #t from phase.
2021-11-07 00:20:35 +01:00
b2ee0798ee
gnu: emacs-helm-bibtex: Update to 2.0.0-3.aa77534.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-bibtex): Update to 2.0.0-3.aa77534.
2021-11-06 22:42:55 +01:00
9c30669551
gnu: Add emacs-citar.
...
* gnu/packages/emacs-xyz.scm (emacs-citar): New variable.
2021-11-06 22:15:36 +01:00
290a7664b5
gnu: fio: Disable native CPU compiler optimizations.
...
* gnu/packages/benchmark.scm (fio)[arguments]: Add #:configure-flags. Adjust
configure phase accordingly.
2021-11-06 17:46:37 +01:00
75f2eb41cc
gnu: fio: Disable Ceph/RADOS support.
...
This little-used feature is easy to add on demand and blows up the closure.
* gnu/packages/benchmark.scm (fio)[inputs]: Remove CEPH.
2021-11-06 17:46:37 +01:00
5e7c2eb7ae
gnu: fio: Don't bother wrapping scripts.
...
fio comes with many scripts of varying utility. Some require extra additional
programs, which users can easily install as needed; there is little use in
imposing all optional dependencies on all users of fio.
* gnu/packages/benchmark.scm (fio)[arguments]: Remove patch-paths phase.
Rewrite move-outputs to move all discovered scripts and not wrap any.
[inputs]: Remove GNUPLOT, PYTHON-2, PYTHON2-NUMPY, and PYTHON2-PANDAS. Add
PYTHON.
2021-11-06 17:46:37 +01:00
567c4f4495
Update mailmap and copyright assignments for Liliana Marie Prikler.
...
Use full names everywhere.
* .mailmap: Use full name for Liliana Marie Prikler.
* gnu/packages/zig.scm: Likewise.
2021-11-06 16:03:43 +01:00
e58994f113
gnu: msmtp: Update to 1.8.19.
...
* gnu/packages/mail.scm (msmtp): Update to 1.8.19.
[properties]: Set ‘release-monitoring-url’.
2021-11-06 10:47:14 +01:00
39bf4eb38f
gnu: Add emacs-devdocs.
...
* gnu/packages/emacs-xyz.scm (emacs-devdocs): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-06 10:46:14 +01:00
c161ec6dc5
gnu: Add emacs-excorporate.
...
* gnu/packages/emacs-xyz.scm (emacs-excorporate): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-06 10:43:29 +01:00
d101486d7f
gnu: Add emacs-fsm.
...
* gnu/packages/emacs-xyz.scm (emacs-fsm): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-06 10:43:29 +01:00
2a66d806a8
gnu: Add emacs-soap-client.
...
* gnu/packages/emacs-xyz.scm (emacs-soap-client): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-06 10:43:29 +01:00
68abfea5c2
gnu: Add emacs-url-http-ntlm.
...
* gnu/packages/emacs-xyz.scm (emacs-url-http-ntlm): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-06 10:43:29 +01:00
dfb7416517
gnu: Add emacs-nadvice.
...
* gnu/packages/emacs-xyz.scm (emacs-nadvice): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-06 10:43:28 +01:00
36d1f71440
gnu: Add emacs-ntlm.
...
* gnu/packages/emacs-xyz.scm (emacs-ntlm): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-06 10:43:28 +01:00
d82fd7c2dd
gnu: webkitgtk: Disable SSE2 when not on x86_64.
...
* gnu/packages/webkit.scm (webkitgtk)[#:phases]: Add ‘disable-sse2’ if the
current (target) system is not an x86_64 one.
2021-11-06 10:33:52 +01:00
3c3131b1c5
gnu: emacs-git-modes: Add TeXinfo markup to description.
...
* gnu/packages/emacs-xyz.scm (git-modes): Add TeXinfo markup.
2021-11-06 10:20:15 +01:00
af14c6f101
gnu: emacs-git-modes: Update to 1.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-git-modes): Update to 1.4.0.
2021-11-06 10:19:31 +01:00
4fd12fb00d
gnu: webkitgtk: Fix build on i686-linux.
...
Fixes <https://bugs.gnu.org/51591 >.
* gnu/packages/webkit.scm (webkitgtk)[arguments]: Use quasiquote for the
argument list. When building on i686-linux, insert a 'substitute*' form in
the 'prepare-build-environment' phase that disables the use of
'__builtin_mul_overflow'.
2021-11-06 00:40:54 -04:00
c55a64cb7e
gnu: opam: Update to 2.1.1.
...
* gnu/packages/ocaml.scm (opam): Update to 2.1.1.
2021-11-05 23:13:25 +01:00
43cb6aa4a0
gnu: Use license: prefix.
...
* gnu/packages/markup.scm (hoedown, markdown, discount,
perl-text-markdown-discount, cmark, smu, md4c, python-mistletoe)
[license]: Prefix with license:.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-05 21:38:45 +01:00
90ab3ef812
gnu: Add lowdown.
...
* gnu/packages/markup.scm (lowdown): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2021-11-05 21:36:04 +01:00
3827c66dc1
gnu: diffoscope: Update to 190.
...
* gnu/packages/diffoscope.scm (diffoscope): Update to 190.
[arguments]: Remove 'skip-python-tests phase.
2021-11-05 11:57:48 -07:00
1ffc0a6be3
gnu: git-annex: Update to 8.20211028.
...
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20211028.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-05 09:32:43 +02:00
575fcd3045
gnu: Add i3status-rust.
...
* gnu/packages/rust-apps.scm (i3status-rust): New variable.
* gnu/packages/patches/i3status-rust-enable-unstable-features.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-04 20:09:53 +02:00
b30e2834f7
gnu: Add rust-libpulse-binding-2.
...
* gnu/packages/crates-io.scm (rust-libpulse-binding-2): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-04 20:09:53 +02:00
468bb6710f
gnu: Add rust-libpulse-sys-1.
...
* gnu/packages/crates-io.scm (rust-libpulse-sys-1): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-04 20:09:53 +02:00
0e6a21c087
gnu: Add rust-cpuprofiler-0.0.
...
* gnu/packages/crates-io.scm (rust-cpuprofiler-0.0): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-04 20:09:38 +02:00
b7aff8e640
gnu: parlatype: Update to 3.0.
...
* gnu/packages/gnome.scm (parlatype): Update to 3.0.
[homepage]: Update URL.
2021-11-04 16:11:22 +01:00
395e3ba3dd
gnu: emacs-ivy-posframe: Update to 0.6.3.
...
* gnu/packages/emacs-xyz.scm (emacs-ivy-posframe): Update to 0.6.3.
2021-11-04 15:28:36 +01:00
d45e823047
gnu: emacs-posframe: Update to 1.1.0.
...
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.1.0.
2021-11-04 15:28:22 +01:00
46b4f9b9a7
gnu: Add vim-nerdcommenter.
...
* gnu/packages/vim.scm (vim-nerdcommenter): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-04 15:30:34 +02:00
88d5081986
gnu: emacs-flymake-shellcheck: Add reference to shellcheck.
...
* gnu/packages/emacs-xyz.scm (emacs-flymake-shellcheck)
[inputs]: Add shellcheck.
[arguments]: Add substitute-shellcheck-path phase.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-04 14:48:43 +02:00
1007eb4874
Revert "gnu: webkitgtk: Use GCC 11 instead of Clang."
...
This reverts commit 63f78f6a6e
2021-11-04 08:27:15 -04:00
72bf3c0b79
gnu: emacs-eshell-did-you-mean: Update to 0.2.
...
* gnu/packages/emacs-xyz.scm (emacs-eshell-did-you-mean): Update to 0.2.
2021-11-04 10:54:37 +01:00
fcb8888f4d
gnu: emacs-ebib: Update to 2.33.
...
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.33.
2021-11-04 10:50:57 +01:00
63f78f6a6e
gnu: webkitgtk: Use GCC 11 instead of Clang.
...
WebkitGTK still compiles fine on x86_64 using GCC 11. This is the only
architecture known to compile currently, as i686 fails with Clang and others
fail due to unsatisfied dependencies.
* gnu/packages/webkit.scm (webkitgtk)[#:phases]: Drop
‘prepare-build-environment’.
[native-inputs]: Drop clang, add gcc.
2021-11-04 06:11:50 +01:00
63c356fe13
gnu: linux-libre 4.4: Update to 4.4.291.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.291.
(linux-libre-4.4-pristine-source): Update hash.
2021-11-03 23:00:37 -04:00
20b93133e2
gnu: linux-libre 4.9: Update to 4.9.289.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.289.
(linux-libre-4.9-pristine-source): Update hash.
2021-11-03 23:00:36 -04:00
deb34d242b
gnu: linux-libre 4.14: Update to 4.14.254.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.254.
(linux-libre-4.14-pristine-source): Update hash.
2021-11-03 23:00:36 -04:00
37757fd6b9
gnu: linux-libre 4.19: Update to 4.19.215.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.215.
(linux-libre-4.19-pristine-source): Update hash.
2021-11-03 23:00:36 -04:00
fd7b06f40e
gnu: linux-libre 5.4: Update to 5.4.157.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.157.
(linux-libre-5.4-pristine-source): Update hash.
2021-11-03 23:00:36 -04:00
e3ccd6ade8
gnu: linux-libre 5.10: Update to 5.10.77.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.77.
(linux-libre-5.10-pristine-source): Update hash.
2021-11-03 23:00:35 -04:00
8d2e77bf45
gnu: linux-libre: Update to 5.14.16.
...
* gnu/packages/linux.scm (linux-libre-5.14-version): Update to 5.14.16.
(linux-libre-5.14-pristine-source): Update hash.
2021-11-03 23:00:32 -04:00
19c38b2acc
gnu: flightgear: Prepare to run test suite.
...
* gnu/packages/games.scm (flightgear)[arguments]: Add phase to build
test binary. Add phase to skip some failing tests. Move 'check phase to
after 'install-data.
2021-11-04 00:11:09 +02:00
b93e06a964
gnu: flightgear: Use system cppunit.
...
* gnu/packages/games.scm (flightgear)[source]: Adjust snippet to remove
bundled cppunit.
[arguments]: Add configure-flag to use system cppunit.
2021-11-04 00:11:09 +02:00
d3abd5cd8b
gnu: simgear: Remove bundled expat.
...
* gnu/packages/games.scm (simgear)[source]: Add snippet to remove
bundled expat.
[arguments]: Add configure-flag to use system expat.
2021-11-04 00:11:08 +02:00
ea173bd874
gnu: Remove openscenegraph-3.4.
...
* gnu/packages/graphics.scm (openscenegraph-3.4): Remove variable.
2021-11-04 00:11:08 +02:00
aae82f2a95
gnu: flightgear: Build with newer inputs.
...
* gnu/packages/games.scm (flightgear)[inputs]: Replace
openscenegraph-3.4 with openscenegraph, boost-for-mysql with boost.
(simgear)[inputs]: Same.
2021-11-04 00:11:08 +02:00
230b34cb5c
gnu: simgear: Honor #:tests? flag.
...
* gnu/packages/games.scm (simgear)[arguments]: Adjust custom 'check
phase to honor the #:tests? flag.
2021-11-04 00:11:08 +02:00
3a5b1cc32a
gnu: flightgear: Build with qt-build-system.
...
* gnu/packages/games.scm (flightgear)[build-system]: Switch to
qt-build-system.
[arguments]: Remove 'wrap-executable phase.
2021-11-04 00:11:08 +02:00
347227efc1
gnu: flightgear: Update to 2020.3.11.
...
* gnu/packages/games.scm (simgear, flightgear): Update to 2020.3.11.
(flightgear-data): Update uri.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-04 00:11:07 +02:00
a18fea5009
Revert "gnu: Add rust-sysinfo-0.20."
...
This reverts commit cc415fd880
2021-11-03 23:09:36 +01:00
5da0efbe9e
gnu: Add rust-polars-0.16.
...
* gnu/packages/crates-io.scm (rust-polars-0.16): New variable.
(rust-polars-0.15): Inherit from above.
2021-11-03 23:00:58 +01:00
d2c7e9c057
gnu: Add rust-polars-lazy-0.16.
...
* gnu/packages/crates-io.scm (rust-polars-lazy-0.16): New variable.
(rust-polars-lazy-0.15): Inherit from above.
2021-11-03 23:00:57 +01:00
0c5a066d5c
gnu: Add rust-polars-io-0.16.
...
* gnu/packages/crates-io.scm (rust-polars-io-0.16): New variable.
(rust-polars-io-0.15): Inherit from above.
2021-11-03 23:00:57 +01:00
4bbb2248c4
gnu: Add rust-polars-core-0.16.
...
* gnu/packages/crates-io.scm (rust-polars-core-0.16): New variable.
(rust-polars-core-0.15): Inherit from above.
2021-11-03 23:00:56 +01:00
bc85e5c072
gnu: Add rust-polars-arrow-0.16.
...
* gnu/packages/crates-io.scm (rust-polars-arrow-0.16): New variable.
(rust-polars-arrow-0.15): Inherit from above.
2021-11-03 23:00:56 +01:00
d21a7c6cf9
gnu: Add rust-arrow2-0.5.
...
* gnu/packages/crates-io.scm (rust-arrow2-0.5): New variable.
2021-11-03 23:00:56 +01:00
b38d777ad0
gnu: Add rust-parquet2-0.4.
...
* gnu/packages/crates-io.scm (rust-parquet2-0.4): New variable.
2021-11-03 23:00:55 +01:00
62f37580b9
gnu: Add rust-parquet-format-async-temp-0.2.
...
* gnu/packages/crates-io.scm (rust-parquet-format-async-temp-0.2): New variable.
2021-11-03 23:00:55 +01:00
fc9082e4e5
gnu: Add rust-lexical-6.
...
* gnu/packages/crates-io.scm (rust-lexical-6): New variable.
(rust-lexical-5): Inherit from above.
2021-11-03 23:00:54 +01:00
2eb523a389
gnu: Add rust-lexical-core-0.8.
...
* gnu/packages/crates-io.scm (rust-lexical-core-0.8): New variable.
(rust-lexical-core-0.7): Inherit from above.
2021-11-03 23:00:54 +01:00
6393bf6027
gnu: Add rust-lexical-parse-float-0.8.
...
* gnu/packages/crates-io.scm (rust-lexical-parse-float-0.8): New variable.
2021-11-03 23:00:53 +01:00
8608e1e1b4
gnu: Add rust-lexical-write-float-0.8.
...
* gnu/packages/crates-io.scm (rust-lexical-write-float-0.8): New variable.
2021-11-03 23:00:53 +01:00
e18404703b
gnu: Add rust-lexical-write-integer-0.8.
...
* gnu/packages/crates-io.scm (rust-lexical-write-integer-0.8): New variable.
2021-11-03 23:00:52 +01:00
5a6d510d3e
gnu: Add rust-lexical-parse-integer-0.8.
...
* gnu/packages/crates-io.scm (rust-lexical-parse-integer-0.8): New variable.
2021-11-03 23:00:52 +01:00
01d52c1876
gnu: Add rust-lexical-util-0.8.
...
* gnu/packages/crates-io.scm (rust-lexical-util-0.8): New variable.
2021-11-03 23:00:51 +01:00
a21bb7f6f7
gnu: Add rust-comfy-table-4.
...
* gnu/packages/crates-io.scm (rust-comfy-table-4): New variable.
(rust-comfy-table-1): Inherit from above.
2021-11-03 23:00:50 +01:00
7e12354cd1
gnu: Add rust-crossterm-0.20.
...
* gnu/packages/crates-io.scm (rust-crossterm-0.20): New variable.
(rust-crossterm-0.19): Inherit from above.
2021-11-03 23:00:50 +01:00
5daad8fae6
gnu: rust-signal-hook-mio-0.2: Update to 0.2.1.
...
* gnu/packages/crates-io.scm (rust-signal-hook-mio-0.2): Update to 0.2.1.
2021-11-03 23:00:49 +01:00
d46c6b74ed
gnu: rust-signal-hook-0.3: Update to 0.3.10.
...
* gnu/packages/crates-io.scm (rust-signal-hook-0.3): Update to 0.3.10.
2021-11-03 23:00:48 +01:00
d48c95d770
gnu: rust-signal-hook-registry-1: Update to 1.4.0.
...
* gnu/packages/crates-io.scm (rust-signal-hook-registry-1): Update to 1.4.0.
2021-11-03 23:00:48 +01:00
e651523b3f
gnu: Add rust-crossterm-winapi-0.8.
...
* gnu/packages/crates-io.scm (rust-crossterm-winapi-0.8): New variable.
(rust-crossterm-winapi-0.7): Inherit from above.
2021-11-03 23:00:47 +01:00
daaa7c4c53
gnu: Add rust-strum-0.21.
...
* gnu/packages/crates-io.scm (rust-strum-0.21): New variable.
(rust-strum-0.20): Inherit from above.
2021-11-03 23:00:46 +01:00
035b9cff0c
gnu: Add rust-strum-macros-0.21.
...
* gnu/packages/crates-io.scm (rust-strum-macros-0.21): New variable.
(rust-strum-macros-0.20): Inherit from above.
2021-11-03 23:00:46 +01:00
1ab8cdedef
gnu: Add rust-hash-hasher-2.
...
* gnu/packages/crates-io.scm (rust-hash-hasher-2): New variable.
2021-11-03 23:00:45 +01:00
4dca103962
gnu: rust-async-stream-0.3: Update to 0.3.2.
...
* gnu/packages/crates-io.scm (rust-async-stream-0.3): Update to 0.3.2.
2021-11-03 23:00:45 +01:00
bd48b7d8fa
gnu: rust-async-stream-impl-0.3: Update to 0.3.2.
...
* gnu/packages/crates-io.scm (rust-async-stream-impl-0.3): Update to 0.3.2.
2021-11-03 23:00:44 +01:00
ffe982b18b
gnu: rust-bitpacking-0.8: Update to 0.8.4.
...
* gnu/packages/crates-io.scm (rust-bitpacking-0.8): Update to 0.8.4.
2021-11-03 23:00:43 +01:00
da0a5bbb19
gnu: Add rust-integer-encoding-3.
...
* gnu/packages/crates-io.scm (rust-integer-encoding-3): New variable.
(rust-integer-encoding-1): Inherit from above.
2021-11-03 23:00:43 +01:00
b6b132865d
gnu: Add rust-streaming-iterator-0.1.
...
* gnu/packages/crates-io.scm (rust-streaming-iterator-0.1): New variable.
2021-11-03 23:00:42 +01:00
ea7246bb9f
gnu: Add rust-strength-reduce-0.2.
...
* gnu/packages/crates-io.scm (rust-strength-reduce-0.2): New variable.
2021-11-03 23:00:42 +01:00
91301b5a51
gnu: rust-strip-ansi-escapes-0.1: Update to 0.1.1.
...
* gnu/packages/crates-io.scm (rust-strip-ansi-escapes-0.1): Update to 0.1.1.
2021-11-03 23:00:41 +01:00
3cafe8c198
gnu: Add rust-scraper-0.12.
...
* gnu/packages/crates-io.scm (rust-scraper-0.12): New variable.
2021-11-03 23:00:40 +01:00
64662ca988
gnu: Add rust-ego-tree-0.6.
...
* gnu/packages/crates-io.scm (rust-ego-tree-0.6): New variable.
2021-11-03 23:00:40 +01:00
cc415fd880
gnu: Add rust-sysinfo-0.20.
...
* gnu/packages/crates-io.scm (rust-sysinfo-0.20): New variable.
2021-11-03 23:00:39 +01:00
a2b7abb99b
gnu: rust-rayon-1: Update to 1.5.1.
...
* gnu/packages/crates-io.scm (rust-rayon-1): Update to 1.5.1.
2021-11-03 23:00:39 +01:00
2f8a3af0b1
gnu: rust-rayon-core-1: Update to 1.9.1.
...
* gnu/packages/crates-io.scm (rust-rayon-core-1): Update to 1.9.1.
2021-11-03 23:00:38 +01:00
fdb9a02a68
gnu: r-s4vectors: Update to 0.30.2.
...
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.2.
2021-11-03 21:07:30 +00:00
81dad9f62d
gnu: r-multidataset: Update to 1.20.2.
...
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.20.2.
2021-11-03 21:07:30 +00:00
c00ca981a9
gnu: r-motifstack: Update to 1.36.1.
...
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.36.1.
2021-11-03 21:07:30 +00:00
a6f270b7af
gnu: r-enrichplot: Update to 1.12.3.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.3.
2021-11-03 21:07:30 +00:00
11cf6d399c
gnu: r-dose: Update to 3.18.3.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.3.
2021-11-03 21:07:29 +00:00
b4888a5581
gnu: r-genefilter: Update to 1.74.1.
...
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.1.
2021-11-03 21:07:29 +00:00
218912f6ad
gnu: r-annotationhub: Update to 3.0.2.
...
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.2.
2021-11-03 21:07:29 +00:00
0bb9c9a723
gnu: r-annotationforge: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.1.
2021-11-03 21:07:29 +00:00
d54a4285ea
gnu: bedtools-2.18: Fix build with newer toolchain.
...
* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Add phase
'compatibility, fixing syntax quirks that are problematic with newer
toolchains.
[native-inputs]: Do not inherit.
[inherit]: Do not inherit.
2021-11-03 21:07:29 +00:00
3c3d7f0410
gnu: r-biocthis: Set HOME variable.
...
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Add build phase
'set-HOME.
2021-11-03 21:07:29 +00:00
4f9f2539f3
gnu: Add r-zellkonverter.
...
* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-03 21:07:29 +00:00
b36fc71953
gnu: r-lubridate: Update to 1.8.0.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.8.0.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
2021-11-03 21:07:29 +00:00
ca6798d7d3
gnu: r-robustbase: Update to 0.93-9.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-9.
2021-11-03 21:07:29 +00:00
a0f8df49dc
gnu: r-ztable: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-ztable): Update to 0.2.3.
2021-11-03 21:07:29 +00:00
34a9cca76c
gnu: r-hmisc: Update to 4.6-0.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.6-0.
2021-11-03 21:07:29 +00:00
ee8094c640
gnu: r-plotly: Update to 4.10.0.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.10.0.
2021-11-03 21:07:29 +00:00
f86e606155
gnu: r-tidyr: Update to 1.1.4.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.4.
2021-11-03 21:07:29 +00:00
e49de81b3d
gnu: r-viridis: Update to 0.6.2.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.2.
2021-11-03 21:07:29 +00:00
af55b6c7f5
gnu: r-mvtnorm: Update to 1.1-3.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-3.
2021-11-03 21:07:28 +00:00
66767856a3
gnu: r-rcpparmadillo: Update to 0.10.7.0.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.7.0.0.
2021-11-03 21:07:28 +00:00
b3d04cd11e
gnu: r-readr: Update to 2.0.2.
...
* gnu/packages/statistics.scm (r-readr): Update to 2.0.2.
2021-11-03 21:07:28 +00:00
d2cabb2474
gnu: r-desc: Update to 1.4.0.
...
* gnu/packages/statistics.scm (r-desc): Update to 1.4.0.
2021-11-03 21:07:28 +00:00
9f46618044
gnu: r-data-table: Update to 1.14.2.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.14.2.
2021-11-03 21:07:28 +00:00
56703a6a1e
gnu: r-tibble: Update to 3.1.5.
...
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.5.
2021-11-03 21:07:28 +00:00
34244f64df
gnu: r-rlang: Update to 0.4.12.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.12.
2021-11-03 21:07:28 +00:00
da7d8aab1c
gnu: r-testthat: Update to 3.1.0.
...
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.0.
2021-11-03 21:07:28 +00:00
0ee5a2c170
gnu: r-knitr: Update to 1.36.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.36.
2021-11-03 21:07:28 +00:00
4ea639a14a
gnu: r-mime: Update to 0.12.
...
* gnu/packages/statistics.scm (r-mime): Update to 0.12.
2021-11-03 21:07:28 +00:00
0178f11814
gnu: r-stringi: Update to 1.7.5.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.5.
2021-11-03 21:07:28 +00:00
b2245f66f6
gnu: r-mgcv: Update to 1.8-38.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-38.
2021-11-03 21:07:28 +00:00
fb735f7de9
gnu: r-logger: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-logger): Update to 0.2.2.
2021-11-03 21:07:28 +00:00
9a54f60ba3
gnu: r-paws-common: Update to 0.3.13.
...
* gnu/packages/cran.scm (r-paws-common): Update to 0.3.13.
2021-11-03 21:07:27 +00:00
ccc23f0e59
gnu: r-dismo: Update to 1.3-5.
...
* gnu/packages/cran.scm (r-dismo): Update to 1.3-5.
[propagated-inputs]: Add r-terra.
2021-11-03 21:07:27 +00:00
f8e998d9aa
gnu: r-ztpln: Update to 0.1.2.
...
* gnu/packages/cran.scm (r-ztpln): Update to 0.1.2.
2021-11-03 21:07:27 +00:00
745dac9391
gnu: r-keras: Update to 2.6.1.
...
* gnu/packages/cran.scm (r-keras): Update to 2.6.1.
2021-11-03 21:07:27 +00:00
e50595af50
gnu: r-stringfish: Update to 0.15.4.
...
* gnu/packages/cran.scm (r-stringfish): Update to 0.15.4.
2021-11-03 21:07:27 +00:00
a4ddc61806
gnu: r-exactextractr: Update to 0.7.1.
...
* gnu/packages/cran.scm (r-exactextractr): Update to 0.7.1.
2021-11-03 21:07:27 +00:00
b8cd476693
gnu: r-textplot: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-textplot): Update to 0.2.1.
2021-11-03 21:07:27 +00:00
b774be8a60
gnu: r-lwgeom: Update to 0.2-8.
...
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-8.
2021-11-03 21:07:27 +00:00
ad8043821a
gnu: r-textshaping: Update to 0.3.6.
...
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.6.
2021-11-03 21:07:27 +00:00
80bcd91076
gnu: r-decon: Update to 1.3-4.
...
* gnu/packages/cran.scm (r-decon): Update to 1.3-4.
2021-11-03 21:07:27 +00:00
06b820105e
gnu: r-seurat: Update to 4.0.5.
...
* gnu/packages/cran.scm (r-seurat): Update to 4.0.5.
2021-11-03 21:07:27 +00:00
7494bac621
gnu: r-qtl2: Update to 0.28.
...
* gnu/packages/cran.scm (r-qtl2): Update to 0.28.
2021-11-03 21:07:26 +00:00
f006a08991
gnu: r-qtl: Update to 1.50.
...
* gnu/packages/cran.scm (r-qtl): Update to 1.50.
2021-11-03 21:07:26 +00:00
00fd349975
gnu: r-perm: Update to 1.0-0.2.
...
* gnu/packages/cran.scm (r-perm): Update to 1.0-0.2.
2021-11-03 21:07:26 +00:00
a365fcbc9c
gnu: r-tidymodels: Update to 0.1.4.
...
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.4.
[propagated-inputs]: Add r-hardhat.
2021-11-03 21:07:26 +00:00
5643a55947
gnu: r-tidytext: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-tidytext): Update to 0.3.2.
2021-11-03 21:07:26 +00:00
d9b0e009c5
gnu: r-workflows: Update to 0.2.4.
...
* gnu/packages/cran.scm (r-workflows): Update to 0.2.4.
2021-11-03 21:07:26 +00:00
2e401e85b5
gnu: r-igraph: Update to 1.2.7.
...
* gnu/packages/cran.scm (r-igraph): Update to 1.2.7.
2021-11-03 21:07:26 +00:00
453ceb8563
gnu: r-exactranktests: Update to 0.8-34.
...
* gnu/packages/cran.scm (r-exactranktests): Update to 0.8-34.
2021-11-03 21:07:26 +00:00
4ccb7b345e
gnu: r-spatstat-geom: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.3-0.
2021-11-03 21:07:26 +00:00
1f552f46ce
gnu: r-goftest: Update to 1.2-3.
...
* gnu/packages/cran.scm (r-goftest): Update to 1.2-3.
2021-11-03 21:07:26 +00:00
2498f757af
gnu: r-memuse: Update to 4.2-1.
...
* gnu/packages/cran.scm (r-memuse): Update to 4.2-1.
2021-11-03 21:07:26 +00:00
bb3f7c1ae9
gnu: r-lightgbm: Update to 3.3.0.
...
* gnu/packages/cran.scm (r-lightgbm): Update to 3.3.0.
2021-11-03 21:07:26 +00:00
d50963ee1b
gnu: r-optimx: Update to 2021-10.12.
...
* gnu/packages/cran.scm (r-optimx): Update to 2021-10.12.
2021-11-03 21:07:25 +00:00
6c6fc67500
gnu: r-rcdd: Update to 1.4.
...
* gnu/packages/cran.scm (r-rcdd): Update to 1.4.
2021-11-03 21:07:25 +00:00
a047882ebc
gnu: r-qgraph: Update to 1.9.
...
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.
[propagated-inputs]: Remove r-dplyr.
2021-11-03 21:07:25 +00:00
3f8f84719d
gnu: r-rpf: Update to 1.0.11.
...
* gnu/packages/cran.scm (r-rpf): Update to 1.0.11.
2021-11-03 21:07:25 +00:00
39b793f8f2
gnu: r-sem: Update to 3.1-13.
...
* gnu/packages/cran.scm (r-sem): Update to 3.1-13.
[propagated-inputs]: Remove r-matrixcalc.
2021-11-03 21:07:25 +00:00
d2b49c25b4
gnu: r-msm: Update to 1.6.9.
...
* gnu/packages/cran.scm (r-msm): Update to 1.6.9.
2021-11-03 21:07:25 +00:00
095bac3cb4
gnu: r-anthropometry: Update to 1.16.
...
* gnu/packages/cran.scm (r-anthropometry): Update to 1.16.
2021-11-03 21:07:25 +00:00
4fc29a0d3d
gnu: r-caret: Update to 6.0-90.
...
* gnu/packages/cran.scm (r-caret): Update to 6.0-90.
[propagated-inputs]: Add r-e1071.
2021-11-03 21:07:25 +00:00
cb1ee31beb
gnu: r-actuar: Update to 3.2-0.
...
* gnu/packages/cran.scm (r-actuar): Update to 3.2-0.
2021-11-03 21:07:25 +00:00
9be3daf763
gnu: r-fda: Update to 5.4.0.
...
* gnu/packages/cran.scm (r-fda): Update to 5.4.0.
[propagated-inputs]: Add r-desolve.
2021-11-03 21:07:25 +00:00
166fdac32a
gnu: r-desolve: Update to 1.30.
...
* gnu/packages/cran.scm (r-desolve): Update to 1.30.
2021-11-03 21:07:25 +00:00
0311f3e5e9
gnu: r-parameters: Update to 0.15.0.
...
* gnu/packages/cran.scm (r-parameters): Update to 0.15.0.
[propagated-inputs]: Add r-datawizard.
2021-11-03 21:07:25 +00:00
9b64ba34e0
gnu: r-terra: Update to 1.4-11.
...
* gnu/packages/cran.scm (r-terra): Update to 1.4-11.
[propagated-inputs]: Remove r-raster.
2021-11-03 21:07:24 +00:00
5c57272156
gnu: r-systemfonts: Update to 1.0.3.
...
* gnu/packages/cran.scm (r-systemfonts): Update to 1.0.3.
2021-11-03 21:07:24 +00:00
77dbd84370
gnu: r-sitmo: Update to 2.0.2.
...
* gnu/packages/cran.scm (r-sitmo): Update to 2.0.2.
[native-inputs]: Add r-knitr.
2021-11-03 21:07:24 +00:00
89618cb5f4
gnu: r-clue: Update to 0.3-60.
...
* gnu/packages/cran.scm (r-clue): Update to 0.3-60.
2021-11-03 21:07:24 +00:00
56c52b9505
gnu: r-mcmcpack: Update to 1.6-0.
...
* gnu/packages/cran.scm (r-mcmcpack): Update to 1.6-0.
2021-11-03 21:07:24 +00:00
65e36bcc9a
gnu: r-pmcmr: Update to 4.4.
...
* gnu/packages/cran.scm (r-pmcmr): Update to 4.4.
2021-11-03 21:07:24 +00:00
0daba2ee2f
gnu: r-yulab-utils: Update to 0.0.4.
...
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.0.4.
2021-11-03 21:07:24 +00:00
2bad8896d9
gnu: r-svmisc: Update to 1.2.3.
...
* gnu/packages/cran.scm (r-svmisc): Update to 1.2.3.
2021-11-03 21:07:24 +00:00
4df33663d4
gnu: r-optparse: Update to 1.7.1.
...
* gnu/packages/cran.scm (r-optparse): Update to 1.7.1.
2021-11-03 21:07:24 +00:00
ceb23d9fda
gnu: r-adegenet: Update to 2.1.5.
...
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.5.
[propagated-inputs]: Remove r-spdep.
2021-11-03 21:07:24 +00:00
545f0c9cd1
gnu: r-sf: Update to 1.0-3.
...
* gnu/packages/cran.scm (r-sf): Update to 1.0-3.
2021-11-03 21:07:24 +00:00
c93f241368
gnu: r-s2: Update to 1.0.7.
...
* gnu/packages/cran.scm (r-s2): Update to 1.0.7.
2021-11-03 21:07:24 +00:00
e5256cfee7
gnu: r-deldir: Update to 1.0-6.
...
* gnu/packages/cran.scm (r-deldir): Update to 1.0-6.
2021-11-03 21:07:23 +00:00
d0640880c4
gnu: r-spdata: Update to 2.0.1.
...
* gnu/packages/cran.scm (r-spdata): Update to 2.0.1.
2021-11-03 21:07:23 +00:00
4a6cfd218d
gnu: r-sets: Update to 1.0-19.
...
* gnu/packages/cran.scm (r-sets): Update to 1.0-19.
2021-11-03 21:07:23 +00:00
2f61f562bb
gnu: r-colourpicker: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-colourpicker): Update to 1.1.1.
[arguments]: Remove modules; use esbuild in build phase 'process-javascript.
[native-inputs]: Remove r-knitr and uglifyjs; add esbuild; change js-jquery
version.
2021-11-03 21:07:23 +00:00
545a2f78a5
gnu: r-rmpfr: Update to 0.8-5.
...
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-5.
2021-11-03 21:07:23 +00:00
9155a17351
gnu: r-grimport: Update to 0.9-4.
...
* gnu/packages/cran.scm (r-grimport): Update to 0.9-4.
2021-11-03 21:07:23 +00:00
19a0015f1c
gnu: r-ore: Update to 1.7.0.
...
* gnu/packages/cran.scm (r-ore): Update to 1.7.0.
2021-11-03 21:07:23 +00:00
a650d1a28a
gnu: r-rvcheck: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-rvcheck): Update to 0.2.1.
2021-11-03 21:07:23 +00:00
d15d9e350c
gnu: r-sodium: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-sodium): Update to 1.2.0.
2021-11-03 21:07:23 +00:00
81be1e2945
gnu: r-arm: Update to 1.12-2.
...
* gnu/packages/cran.scm (r-arm): Update to 1.12-2.
[propagated-inputs]: Remove r-hmisc.
2021-11-03 21:07:23 +00:00
2d37261707
gnu: r-misc3d: Update to 0.9-1.
...
* gnu/packages/cran.scm (r-misc3d): Update to 0.9-1.
2021-11-03 21:07:23 +00:00
581111b5b8
gnu: r-rcppgsl: Update to 0.3.10.
...
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.10.
2021-11-03 21:07:23 +00:00
64b3d356bb
gnu: r-rcmdcheck: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.4.0.
[propagated-inputs]: Remove r-crayon; add r-curl.
2021-11-03 21:07:22 +00:00
6813c6c150
gnu: r-remotes: Update to 2.4.1.
...
* gnu/packages/cran.scm (r-remotes): Update to 2.4.1.
2021-11-03 21:07:22 +00:00
212ee4240a
gnu: r-usethis: Update to 2.1.0.
...
* gnu/packages/cran.scm (r-usethis): Update to 2.1.0.
[propagated-inputs]: Add r-ellipsis.
2021-11-03 21:07:22 +00:00
2ecee21fe8
gnu: r-effectsize: Update to 0.5.
...
* gnu/packages/cran.scm (r-effectsize): Update to 0.5.
[propagated-inputs]: Add r-datawizard and r-performance.
2021-11-03 21:07:22 +00:00
250e885841
gnu: r-performance: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-performance): Update to 0.8.0.
2021-11-03 21:07:22 +00:00
4b20190e11
gnu: r-tmb: Update to 1.7.22.
...
* gnu/packages/cran.scm (r-tmb): Update to 1.7.22.
2021-11-03 21:07:22 +00:00
bc26a9db39
gnu: r-coin: Update to 1.4-2.
...
* gnu/packages/cran.scm (r-coin): Update to 1.4-2.
2021-11-03 21:07:22 +00:00
8492e24a1f
gnu: r-libcoin: Update to 1.0-9.
...
* gnu/packages/cran.scm (r-libcoin): Update to 1.0-9.
2021-11-03 21:07:22 +00:00
ba77d9096a
gnu: r-emmeans: Update to 1.7.0.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.0.
[propagated-inputs]: Remove r-plyr.
2021-11-03 21:07:22 +00:00
e1469d55f0
gnu: r-th-data: Update to 1.1-0.
...
* gnu/packages/cran.scm (r-th-data): Update to 1.1-0.
[native-inputs]: Add r-knitr.
2021-11-03 21:07:22 +00:00
aa0d27b4e2
gnu: r-acceptancesampling: Update to 1.0-7.
...
* gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-7.
2021-11-03 21:07:22 +00:00
cf4d90becc
gnu: r-raster: Update to 3.5-2.
...
* gnu/packages/cran.scm (r-raster): Update to 3.5-2.
[propagated-inputs]: Add r-terra.
2021-11-03 21:07:21 +00:00
de43669e60
gnu: r-qualv: Update to 0.3-4.
...
* gnu/packages/cran.scm (r-qualv): Update to 0.3-4.
2021-11-03 21:07:21 +00:00
76185fdae2
gnu: r-cmplot: Update to 3.7.0.
...
* gnu/packages/cran.scm (r-cmplot): Update to 3.7.0.
2021-11-03 21:07:21 +00:00
8727af3b2e
gnu: r-manipulatewidget: Update to 0.11.1.
...
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.11.1.
2021-11-03 21:07:21 +00:00
Ricardo Wurmus
Thorsten Wilms
Xinglu Chen
Ludovic Courtès
Brendan Tildesley
Tobias Geerinckx-Rice
Felix Gruber
Arun Isaac
Vinicius Monego
Efraim Flashner
Marius Bakke
Mark H Weaver
Nicolas Goaziou
Liliana Marie Prikler
Aleksandr Vityazev
phodina
Julien Lepiller
Vagrant Cascadian
Kyle Meyer
Foo Chuan Wei
Morgan Smith
Leo Famulari
Mădălin Ionel Patrașcu