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122805 Commits (cf6abf50dbbbd95fef465ab4bb3b608843ac47e1)

Author SHA1 Message Date
Ricardo Wurmus c7c7dfcfa6
gnu: r-curl: Update to 5.0.2. 
* gnu/packages/cran.scm (r-curl): Update to 5.0.2.
[properties]: Protect "curl" input from updater.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 47629756b6
gnu: r-httr: Update to 1.4.7. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.7.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus e67dce9934
gnu: r-gtable: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.4.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 5092c98c12
gnu: r-cairo: Add optional libraries. 
* gnu/packages/statistics.scm (r-cairo)[inputs]: Remove libxt; add harfbuzz,
icu4c, libjpeg-turbo, and libtiff.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 11038f9509
gnu: r-cairo: Update to 1.6-1. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.6-1.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus edddda11cd
gnu: r-quantreg: Update to 5.97. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.97.
[arguments]: Quote phases instead of argument list.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 84e63470de
gnu: r-acepack: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.2.
[properties]: Protect gfortran input from updater.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 7fa2aacade
gnu: r-proj4: Update to 1.0-13. 
* gnu/packages/cran.scm (r-proj4): Update to 1.0-13.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 4aeee4b57d
gnu: r-spatial: Update to 7.3-17. 
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-17.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 091bf43b7f
gnu: r-survival: Update to 3.5-7. 
* gnu/packages/statistics.scm (r-survival): Update to 3.5-7.
 2023-08-28 14:22:44 +02:00
Ricardo Wurmus 05044a5446
gnu: r-ggplot2: Update to 3.4.3. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.3.
 2023-08-28 14:22:43 +02:00
宋文武 4a49a89b09
gnu: intel-xed: Update to 2023.08.21. 
* gnu/packages/assembly.scm (intel-xed): Update to 2023.08.21.
[source]: Remove patches.
[native-inputs]: Remove tcsh.  Update mbuild to 2022.07.28.
* gnu/packages/patches/intel-xed-fix-nondeterminism.patch: Remove file
* gnu/local.mk (dist_patch_DATA): Remove it.
 2023-08-28 18:12:06 +08:00
宋文武 7533ed956c
gnu: anki: Fix preferences error. 
Fixes <https://issues.guix.gnu.org/65506>.

* gnu/packages/education.scm (anki)[source]: Add snippet.
 2023-08-28 18:07:17 +08:00
宋文武 23bcc85765
gnu: Add fonttosfnt. 
* gnu/packages/xorg.scm (fonttosfnt): New variable.
 2023-08-28 18:05:38 +08:00
宋文武 af1efa6f27
gnu: Add font-unscii. 
* gnu/packages/fonts.scm (font-unscii): New variable.
 2023-08-28 18:05:20 +08:00
宋文武 ceff14b7cd
gnu: Add gdb-multiarch. 
* gnu/packages/gdb.scm (gdb-multiarch): New variable.
 2023-08-28 18:01:07 +08:00
Navid Afkhami 058ce073da
gnu: Add r-ggstatsplot. 
* gnu/packages/cran.scm (r-ggstatsplot): New variable.
 2023-08-28 10:39:00 +02:00
Navid Afkhami ffa3355458
gnu: Add r-correlation. 
* gnu/packages/cran.scm (r-correlation): New variable.
 2023-08-28 10:39:00 +02:00
Navid Afkhami 47f69a881a
gnu: Add r-statsexpressions. 
* gnu/packages/cran.scm (r-statsexpressions): New variable.
 2023-08-28 10:38:07 +02:00
Navid Afkhami 9892efde37
gnu: Add r-wrs2. 
* gnu/packages/cran.scm (r-wrs2): New variable.
 2023-08-28 10:38:07 +02:00
Navid Afkhami 458832c16e
gnu: Add r-mc2d. 
* gnu/packages/cran.scm (r-mc2d): New variable.
 2023-08-28 10:38:07 +02:00
Ricardo Wurmus 3b92730212
gnu: r-oompadata: Update home page to HTTPS. 
* gnu/packages/cran.scm (r-oompadata)[home-page]: Use HTTPS.
 2023-08-28 10:29:43 +02:00
Navid Afkhami 32cdced051
gnu: Add r-oompabase. 
* gnu/packages/cran.scm (r-oompabase): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:29:26 +02:00
Navid Afkhami 48d90820e4
gnu: Add r-oompadata. 
* gnu/packages/cran.scm (r-oompadata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:25:50 +02:00
Navid Afkhami cf941786ee
gnu: Add r-mousegastrulationdata. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:19:53 +02:00
Navid Afkhami aa47077a8b
gnu: Add r-bumpymatrix. 
* gnu/packages/bioconductor.scm (r-bumpymatrix): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:17:27 +02:00
Navid Afkhami 0b0e050415
gnu: Add r-msigdb. 
* gnu/packages/bioconductor.scm (r-msigdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:06:37 +02:00
Navid Afkhami aaf261cc8c
gnu: Add r-earlywarnings. 
* gnu/packages/cran.scm (r-earlywarnings): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 10:01:17 +02:00
Navid Afkhami 432cf5b449
gnu: Add r-tgp. 
* gnu/packages/cran.scm (r-tgp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:58:06 +02:00
Navid Afkhami 2dc030f38f
gnu: Add r-maptree. 
* gnu/packages/cran.scm (r-maptree): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:54:46 +02:00
Navid Afkhami dd14ee0676
gnu: Add python-scdamandtools. 
* gnu/packages/bioinformatics.scm (python-scdamandtools): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-08-28 09:50:08 +02:00
Leo Famulari 0aa74bebe3
gnu: linux-libre 6.1: Update to 6.1.47. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.47.
(linux-libre-6.1-pristine-source): Update hash.
 2023-07-23 22:26:00 -04:00
Leo Famulari 96d89018a0
gnu: linux-libre: Update to 6.4.12. 
* gnu/packages/linux.scm (linux-libre-6.4-version): Update to 6.4.12.
(linux-libre-6.4-pristine-source): Update hash.
 2023-07-23 22:26:00 -04:00
Tobias Geerinckx-Rice 5a2c3352d8
Revert "gnu: system: Add home-directory-permissions field to <user-account>." 
This reverts commit e9a5eebc78, which
as far as I can tell breaks system roll-backs thusly:

[...]
In gnu/build/accounts.scm:
   239:27  3 (_ #<<password-entry> name: "root" password: "x" uid: 0 gid: 0 real-name: "System >)
In unknown file:
           2 (string-join ("root" "x" "0" "0" "System administrator" "/root" #t) ":" #<undefined>)
In ice-9/boot-9.scm:
  1685:16  1 (raise-exception _ #:continuable? _)
  1685:16  0 (raise-exception _ #:continuable? _)

ice-9/boot-9.scm:1685:16: In procedure raise-exception:
In procedure string-append: Wrong type (expecting string): #t
 2023-08-20 02:00:00 +02:00
Greg Hogan 37cca1d87e
gnu: vbz-compression: Update to 1.0.3. 
* gnu/packages/bioinformatics.scm (vbz-compression): Update to 1.0.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:45 +01:00
Greg Hogan 1ae56be99e
gnu: spdlog: Fix tests. 
* gnu/packages/patches/spdlog-fix-tests.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/logging.scm (spdlog)[source]: Use patch.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:45 +01:00
Greg Hogan 68b3d71806
gnu: catch2: Update to 3.4.0. 
* gnu/packages/check.scm (catch2): Update to 3.4.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:16:44 +01:00
Cayetano Santos e7c7efc296
gnu: emacs-corfu-doc-terminal: Update to 0.9. 
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): Update to 0.9.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:11:30 +01:00
Cayetano Santos 35421248b1
gnu: emacs-gptel: Update to 0.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.4.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:11:07 +01:00
Greg Hogan 6482f61a0c
gnu: python-graph-tool: Update to 2.57. 
* gnu/packages/graph.scm (python-graph-tool): Update to 2.57.
[propagated-inputs]: Add python-zstandard.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:10:23 +01:00
Andy Tai be2786144c
gnu: gemmlowp: Update to 0.1-1.08e4bb3. 
* gnu/packages/machine-learning.scm (gemmlowp): Update to 0.1-1.08e4bb3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-08-27 19:05:57 +01:00
Andreas Enge 8b4a248fc4
Update tex team. 
* etc/teams.scm.in: Add gnu/packages/texlive.scm to the files and Andreas
Enge to the members of the tex team.
 2023-08-27 12:26:49 +02:00
Hilton Chain 5856e185a3
gnu: Add tree-sitter-cmake. 
* gnu/packages/tree-sitter.scm (tree-sitter-cmake): New variable.
 2023-08-27 12:11:04 +08:00
Hilton Chain 493e9c2f54
gnu: phantomsocks: Update to 0.0.0-20230811053544-53b995bdab83. 
* gnu/packages/networking.scm (phantomsocks): Update to
0.0.0-20230811053544-53b995bdab83.
[propagated-inputs]: Move go-github-com-google-gopacket and
go-github-com-macronut-go-tproxy to...
[inputs]: ...here.
 2023-08-27 12:08:00 +08:00
Hilton Chain 0ba7debb02
gnu: picard: Update to 2.9.1. 
* gnu/packages/music.scm (picard): Update to 2.9.1.
[uri]: Switch mirror.
[#:phases]: Add phase 'set-HOME.
Remove phase 'delete-failing-test.
 2023-08-27 12:05:16 +08:00
Piotr Kwiecinski e9bea73e2d
gnu: emacs-orderless: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-orderless): Update to 1.0, previously used
commit was pointing to 0.8.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:41:11 +08:00
Fabio Natali 262efbf9b1
gnu: emacs-hide-mode-line: Update to 1.0.3. 
* gnu/packages/emacs-xyz.scm (emacs-hide-mode-line): Update to 1.0.3.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:39:53 +08:00
Cayetano Santos 5476f79e41
gnu: emacs-helpful: Update to 0.21. 
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.21.

Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2023-08-27 11:33:58 +08:00
Lu Hui 28fdf6cc16
gnu: libsigrokdecode: Update to 0.5.3-0.e6962b3, fix build. 
* gnu/packages/electronics.scm (libsigrokdecode): Update to 0.5.3-0.e6962b3.
[source]: Use git-fetch.  Remove patches.
[native-inputs]: Add libtool.
[arguments]<#:phases>: Remove bootstrap phase.
* gnu/packages/patches/libsigrokdecode-python3.9-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-08-27 10:19:34 +08:00
Maxim Cournoyer 1dce887776
gnu-maintenance: Consider Qt source tarballs as "release files". 
* guix/gnu-maintenance.scm (release-file?): Use positive logic in doc.
Add a special case for Qt source archives.
* tests/gnu-maintenance.scm ("release-file?"): Update test.
 2023-08-26 11:38:56 -04:00