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74287 Commits (d9e7d9c40843f508275daeddf90cb4b307db2fbe)

Author SHA1 Message Date
Efraim Flashner 110f6b78e9
gnu: ruby-minitest-hooks: Skip tests.
* gnu/packages/ruby.scm (ruby-minitest-hooks)[arguments]: Skip test
suite.
2021-08-09 14:33:16 +03:00
Efraim Flashner c53c083b0c
gnu: ruby-minitest-hooks: Update to 1.5.0.
* gnu/packages/ruby.scm (ruby-minitest-hooks): Update to 1.5.0.
2021-08-09 14:32:46 +03:00
Efraim Flashner 8ce8baae79
gnu: ruby-minitest: Update to 5.14.4.
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.14.4.
2021-08-09 14:23:15 +03:00
Efraim Flashner 62c3d00d1c
gnu: python-pytest-isort: Update to 2.0.0.
* gnu/packages/python-check.scm (python-pytest-isort): Update to 2.0.0.
[native-inputs]: Add python-mock.
2021-08-09 14:20:30 +03:00
Efraim Flashner c94d42d951
gnu: python-pytest-isort: Honor #:tests in check phase.
* gnu/packages/python-check.scm (python-pytest-isort)[arguments]: Honor
 #:tests flag.
2021-08-09 14:18:35 +03:00
Efraim Flashner b8295d2529
gnu: python-jinja2: Update to 3.0.1.
* gnu/packages/python-xyz.scm (python-jinja2): Update to 3.0.1.
2021-08-09 13:51:48 +03:00
Efraim Flashner 967999f096
gnu: python-markupsafe: Update to 2.0.1.
* gnu/packages/python-xyz.scm (python-markupsafe): Update to 2.0.1.
2021-08-09 13:51:48 +03:00
Efraim Flashner 1122663e4f
gnu: python-itsdangerous: Update to 2.0.1.
* gnu/packages/python-xyz.scm (python-itsdangerous): Update to 2.0.1.
2021-08-09 13:51:48 +03:00
Efraim Flashner 6c601b8d2f
gnu: python-flask: Update to 2.0.1.
* gnu/packages/python-web.scm (python-flask): Update to 2.0.1.
2021-08-09 13:51:48 +03:00
Efraim Flashner 70833c2ec8
gnu: python-markupsafe: Honor #:tests in check phase.
* gnu/pacakges/python-xyz.scm (python-markupsafe)[arguments]: Honor #:tests flag.
2021-08-09 13:51:30 +03:00
Efraim Flashner 830a47e85d
gnu: python-flask: Honor #:tests in check phase.
* gnu/packages/python-web.scm (python-flask)[arguments]: Honor #:tests flag.
2021-08-09 13:01:04 +03:00
Efraim Flashner 60c9828933
gnu: python-yarl: Update to 1.6.3.
* gnu/packages/python-web.scm (python-yarl): Update to 1.6.3.
[source]: Add snippet to remove cythonized code.
[arguments]: Skip tests. Add custom 'check phase. Add phase to cythonize
code.
[native-inputs]: Add python-cython.
2021-08-09 12:54:30 +03:00
Efraim Flashner 48b5e57ddc
gnu: python-werkzeug: Update to 2.0.1.
* gnu/packages/python-web.scm (python-werkzeug): Update to 2.0.1.
[arguments]: Actually replace check phase. Honor #:tests.
[native-inputs]: Add python-xprocess.
2021-08-09 12:35:44 +03:00
Efraim Flashner 7e8146923f
gnu: python-pytest-xprocess: Update to 0.18.1.
* gnu/packages/check.scm (python-pytest-xprocess): Update to 0.18.1.
[propagated-inputs]: Remove python-pytest-cache.
[native-inputs]: Add python-setuptools-scm.
[home-page]: Update to new home-page.
2021-08-09 12:28:22 +03:00
Efraim Flashner 3fe23854eb
gnu: python-soupsieve: Fix building.
* gnu/packages/python-xyz.scm (python-soupsieve)[arguments]: Skip sanity
check. Convert to gexp.
2021-08-09 12:14:16 +03:00
Efraim Flashner 79ca85d2ff
gnu: python-pyicu: Update to 2.7.4.
* gnu/packages/python-xyz.scm (python-pyicu): Update to 2.7.4.
2021-08-09 12:04:21 +03:00
Efraim Flashner e4514f51c7
gnu: python-ruamel.yaml: Update to 0.16.13.
* gnu/packages/serialization.scm (python-ruamel.yaml): Update to 0.16.13.
[propagated-inputs]: Add python-ruamel.yaml.clib.
[home-page]: Update to new home-page.
(python2-ruamel.yaml): Remove variable.
2021-08-09 12:03:14 +03:00
Efraim Flashner a852a6d168
gnu: Add python-ruamel.yaml.clib.
* gnu/packages/serialization.scm (python-ruamel.yaml.clib): New variable.
2021-08-09 12:02:24 +03:00
Efraim Flashner d418784dbd
gnu: python-docopt: Honor #:tests? in check phase.
* gnu/packages/python-xyz.scm (python-docopt)[arguments]: In custom
'check phase honor #:tests?.
2021-08-09 10:02:02 +03:00
Efraim Flashner 23b9dadc1d
gnu: python-docopt: Fix test suite for pytest-6.
* gnu/packages/python-xyz.scm (python-docopt)[source]: Add patch.
* gnu/packages/patches/python-docopt-pytest6-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-08-09 10:00:38 +03:00
Leo Famulari e6388b48f3
gnu: VDE 2: Update to 2.3.2-0.8c65ebc.
Updating to this unreleased revision allows us to package VDE 2 with
wolfSSL instead of the obsolete OpenSSL 1.0:

https://github.com/virtualsquare/vde-2/issues/2

* gnu/packages/networking.scm (vde2): Update to 2.3.2-0.8c65ebc.
[source]: Use git-fetch.
[native-inputs]: Add autoconf, automake, and libtool
[inputs]: Replace openssl-1.0 with wolfssl.
2021-07-27 12:35:00 -04:00
Leo Famulari 2ea947fb7d
gnu: OpenImageIO: Update to 2.2.11.1.
* gnu/packages/graphics.scm (openimageio): Update to 2.2.11.1.
[inputs]: Add libheif, for AV1 decoding support.
2021-07-27 12:34:57 -04:00
Leo Famulari f4f4037fcd
gnu: vigra: Update to 1.11.1-0.9b514fa.
* gnu/packages/image.scm (vigra): Update to 1.11.1-0.9b514fa.
[source]: Use git-fetch. Remove obsolete patch.
* gnu/packages/patches/vigra-python-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-07-27 12:34:57 -04:00
Efraim Flashner e012c29463
gnu: libantlr3c: Simplify configure.
* gnu/packages/java.scm (libantlr3c)[arguments]: Remove custom
'configure phase. Move '--enable-64bit' to configure-flags, conditional
on being for a 64-bit platform.
2021-08-08 16:36:42 +03:00
Sarah Morgensen 2818c66e93
gnu: go-1.14: Fix test failure with GCC 9+.
With GCC 9+, go-1.14 fails a test when the gold linker is not
available (https://github.com/golang/go/issues/39157). Backport the fix
for that from https://github.com/golang/go/commit/4ec4a79.

* gnu/packages/golang.scm (go-1.14)[arguments]<#:phases>{prebuild}:
Fix test failure with GCC 9+.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-08 15:13:44 +03:00
Efraim Flashner 0e66a66864
gnu: libmspub: Add missing include.
* gnu/packages/libreoffice.scm (libmspub)[source]: Add snippet to add
missing include header.
2021-08-08 15:13:44 +03:00
Efraim Flashner 08a9e49d02
gnu: libfreehand: Fix compiling with gcc-10.
* gnu/packages/libreoffice.scm (libfreehand)[arguments]: Add
configure-flag to not treat warnings as errors.
2021-08-08 15:13:32 +03:00
Efraim Flashner d30130bcd6
gnu: libcss: Fix building with gcc-10.
* gnu/packages/web.scm (libcss)[source]: Add snippet to initialize the
value of a variable.
2021-08-08 14:46:45 +03:00
Efraim Flashner 990704507b
gnu: libe-book: Fix building with icu4c-69.
* gnu/packages/libreoffice.scm (libe-book)[source]: Add snippet to work
around changes in icu4c's code.
2021-08-08 14:46:44 +03:00
Efraim Flashner 086183598e
gnu: gnupg-1: Fix build with gcc-10.
* gnu/packages/gnupg.scm (gnupg-1)[source]: Add patch.
* gnu/packages/patches/gnupg-1-build-with-gcc10.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-08-08 13:51:11 +03:00
Efraim Flashner 0112675d11
gnu: cpputest: Update to 4.0.
* gnu/packages/check.scm (cpputest): Update to 4.0.
2021-08-08 13:39:17 +03:00
Efraim Flashner 5d4f26e9bc
gnu: Remove redundant icu4c-69.
* gnu/packages/icu4c.scm (icu4c-69): Remove variable.
* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Replace
icu4c-69 with icu4c.
2021-08-08 11:51:50 +03:00
Efraim Flashner 543aab8992
gnu: p7zip: Remove input labels.
* gnu/packages/compression.scm (p7zip)[native-inputs]: Rewrite using
target macros and remove labels.
2021-08-08 10:58:47 +03:00
Efraim Flashner 86fd77476d
gnu: p7zip: Adjust custom configure phase.
* gnu/packages/compression.scm (p7zip)[arguments]: Use new target macros
to simplify custom 'configure phase.
2021-08-08 10:57:27 +03:00
Efraim Flashner de0954d18c
gnu: p7zip: Honor #:tests? flag.
* gnu/packages/compression.scm (p7zip)[arguments]: Only run test suite
when #:tests? is true.
2021-08-08 10:46:44 +03:00
Efraim Flashner fcd88262df
gnu: p7zip: Fix building with gcc-10.
* gnu/packages/compresson.scm (p7zip)[source]: Adjust snippet to fix
compilation error using gcc-10.
2021-08-08 10:44:00 +03:00
Leo Famulari 944ba4237f
gnu: python-sphinx: Update to 4.0.3.
This fixes a build failure of MPD (Music Player Daemon), that looks like this:

"RuntimeError: File 'doc/mpd.1' could not be found"

https://github.com/MusicPlayerDaemon/MPD/issues/1183

* gnu/packages/sphinx.scm (python-sphinx): Update to 4.0.3.
2021-07-27 12:34:57 -04:00
Leo Famulari ba2c594c1c
gnu: glib-networking: Update to 2.68.2.
* gnu/packages/gnome.scm (glib-networking): Update to 2.68.2.
2021-07-27 12:34:57 -04:00
Ludovic Courtès 058b339d31
gnu: ocaml@4.09: Fix link failure.
* gnu/packages/patches/ocaml-4.09-multiple-definitions.patch: New file.
* gnu/packages/ocaml.scm (ocaml-4.09)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-08-05 15:46:46 +02:00
Ludovic Courtès cfc1d13346
gnu: ocaml-boot: Change package name to "ocaml-boot".
* gnu/packages/ocaml.scm (ocaml-4.07-boot, ocaml-4.07)[name]: New
field.
2021-08-05 15:46:46 +02:00
Ludovic Courtès 1d580f47a9
gnu: ocaml@4.07: Fix link failure.
The link failure shows up when using ld from GNU Binutils 2.37, and not
with 2.34.

* gnu/packages/patches/ocaml-multiple-definitions.patch: New file.
* gnu/packages/ocaml.scm (ocaml-4.07-boot)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-08-05 15:46:46 +02:00
Efraim Flashner bfb690be87
gnu: mesa: Build more vulkan drivers on aarch64-linux.
* gnu/packages/gl.scm (mesa)[arguments]: Adjust the configure-flags to
also build vulkan drivers on aarch64-linux for broadcom and swrast.
2021-08-05 13:36:03 +03:00
Efraim Flashner 8e885757c7
gnu: mesa: Fix building on aarch64-linux.
* gnu/packages/gl.scm (mesa)[arguments]: Adjust custom
'disable-failing-test phase to skip test failing on aarch64-linux.
2021-08-05 13:35:16 +03:00
Ludovic Courtès 1685128e6e
gnu: mesa-opencl, mesa-opencl-icd: Build all the LLVM targets again.
Reported by John Kehayias <john.kehayias@protonmail.com>
in <https://issues.guix.gnu.org/49794>.

* gnu/packages/patches/mesa-opencl-all-targets.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa-opencl)[source]: Use it.
2021-08-03 18:18:45 +02:00
Thiago Jung Bauermann 2b6bf23c60
gnu: texlive-latex-base: Propagate ‘texlive-latex-l3backend’
Some packages need files from ‘texlive-latex-l3backend’ – which is a
supporting package of LaTeX3 – so propagate it from ‘texlive-latex-base’.

* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Remove
‘texlive-latex-l3backend’ from the texlive union.
* gnu/packages/tex.scm (texlive-latex-base)[propagated-inputs]: Add
‘texlive-latex-l3backend’.
(texlive-latex-xkeyval)[native-inputs]: Remove ‘texlive-latex-l3backend’.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-03 18:18:45 +02:00
Marius Bakke 5e4cdb5b3b
gnu: python-django: Fix test failure.
* gnu/packages/django.scm (python-django)[arguments]: Set PYTHONPATH.
2021-08-01 23:24:47 +02:00
Marius Bakke 1f82eeec8d
gnu: mg: Update style.
* gnu/packages/text-editors.scm (mg)[native-inputs, inputs]: Remove labels.
[arguments]: Use SEARCH-INPUT-FILE and #$OUTPUT in phases.
2021-08-01 23:24:47 +02:00
Marius Bakke 317313a178
gnu: mg: Convert arguments to gexp.
* gnu/packages/text-editors.scm (mg)[arguments]: Turn into gexp.
2021-08-01 23:24:46 +02:00
Marius Bakke d2e102d4e4
Merge branch 'master' into core-updates-frozen 2021-08-01 23:23:32 +02:00
Marius Bakke 536bec1ce5
gnu: zathura: Update to 0.4.8.
* gnu/packages/pdf.scm (zathura): Update to 0.4.8.
2021-08-01 23:19:29 +02:00
Marius Bakke 4a8a184278
gnu: girara: Update to 0.3.6.
* gnu/packages/gtk.scm (girara): Update to 0.3.6.
2021-08-01 23:19:29 +02:00
Marius Bakke be73c55ae5
gnu: sbcl-cl-libxml2: Remove duplicate input.
* gnu/packages/lisp-xyz.scm (sbcl-cl-libxml2)[native-inputs]: Remove SBCL-LIFT.
2021-08-01 23:19:29 +02:00
Marius Bakke 5c121be1f9
gnu: python-django: Update to 3.2.5 [fixes CVE-2021-35042].
* gnu/packages/django.scm (python-django): Update to 3.2.5.
2021-08-01 23:19:29 +02:00
Marius Bakke 3e5e10d51b
gnu: mg: Update to 20210609.
* gnu/packages/text-editors.scm (mg): Update to 20210609.
[source](snippet): Remove trailing #t.
2021-08-01 23:19:29 +02:00
Nicolas Goaziou 6e99e113e6
gnu: emacs-ts: Update to 0.2.2.
* gnu/packages/emacs-xyz.scm (emacs-ts): Update to 0.2.2.
2021-08-01 20:57:47 +02:00
Nicolas Goaziou c044940a67
gnu: emacs-magit: Update to 3.2.0.
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.2.0.
2021-08-01 20:56:05 +02:00
Nicolas Goaziou 9634f7f42e
gnu: emacs-eacl: Update to 2.1.0.
* gnu/packages/emacs-xyz.scm (emacs-eacl): Update to 2.1.0.
2021-08-01 20:54:14 +02:00
Arun Isaac 5b6447fcce
gnu: Add go-github-com-klauspost-compress.
* gnu/packages/golang.scm (go-github-com-klauspost-compress): New variable.
2021-08-01 19:46:58 +05:30
Arun Isaac 7aa2972bfa
gnu: Add go-github-com-flynn-noise.
* gnu/packages/golang.scm (go-github-com-flynn-noise): New variable.
2021-08-01 19:20:27 +05:30
Arun Isaac c94683e017
gnu: Add go-golang-org-x-term.
* gnu/packages/golang.scm (go-golang-org-x-term): New variable.
2021-08-01 19:20:27 +05:30
Arun Isaac 42d9c3b24a
gnu: Add go-lukechampine-com-blake3.
* gnu/packages/golang.scm (go-lukechampine-com-blake3): New variable.
2021-08-01 19:20:26 +05:30
Arun Isaac edaea8d2ac
gnu: Add go-github-com-dustin-go-humanize.
* gnu/packages/golang.scm (go-github-com-dustin-go-humanize): New variable.
2021-08-01 19:20:26 +05:30
Arun Isaac 344460bab4
gnu: Add go-github-com-davecgh-go-xdr.
* gnu/packages/golang.scm (go-github-com-davecgh-go-xdr): New variable.
2021-08-01 19:20:21 +05:30
Morgan Smith fcba63f8b7
gnu: Add emacs-autocrypt.
* gnu/packages/emacs-xyz.scm (emacs-autocrypt): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-08-01 18:14:55 +05:30
Ricardo Wurmus 5ab679f4da
gnu: Add libpst.
* gnu/packages/mail.scm (libpst): New variable.
2021-08-01 14:23:08 +02:00
Nicolas Goaziou 42aee12103
gnu: scintilla: Update to 5.1.1.
* gnu/packages/text-editors.scm (scintilla): Update to 5.1.1.
2021-08-01 13:44:35 +02:00
Nicolas Goaziou 532000024f
gnu: emacs-evil-nerd-commenter: Update to 3.5.5.
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.5.5.
2021-08-01 13:23:14 +02:00
Nicolas Goaziou e916f9ab60
gnu: emacs-evil-matchit: Update to 2.3.13.
* gnu/packages/emacs-xyz.scm (emacs-evil-matchit): Update to 2.3.13.
2021-08-01 13:19:44 +02:00
Nicolas Goaziou 89d6664bab
gnu: emacs-evil-collection: Update to 0.0.6.
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.6.
2021-08-01 13:18:16 +02:00
Nicolas Goaziou 6e0eb82f21
gnu: emacs-perspective: Update to 2.16.
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.16.
2021-08-01 13:16:38 +02:00
Nicolas Goaziou dbbadb87b4
gnu: giac: Update to 1.7.0-23.
* gnu/packages/algebra.scm (giac): Update to 1.7.0-23.
2021-08-01 13:06:33 +02:00
Felix Gruber c8bcef2598
gnu: sameboy: Update to 0.14.4.
* gnu/packages/emulators.scm (sameboy): Update to 0.14.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-01 12:58:03 +02:00
Ludovic Courtès b2a5a180cf
gnu: glib-networking: Update to 2.68.1.
* gnu/packages/gnome.scm (glib-networking): Update to 2.68.1.
2021-07-31 23:46:17 +02:00
Ludovic Courtès 0a1a1ad213
gnu: glib-networking: Skip failing test.
* gnu/packages/patches/glib-networking-gnutls-binding.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (glib-networking)[source]: Use it.
2021-07-31 23:42:21 +02:00
Ludovic Courtès 9fb7269059
gnu: icedtea@1.13.13: Add 'file-name' field to the origins.
* gnu/packages/java.scm (icedtea-6)[native-inputs]: Add 'file-name'
field to all the origins.
2021-07-31 15:51:39 +02:00
Ludovic Courtès 69dde4e354
gnu: gnutls: Patch the Guile bindings for EINTR/EAGAIN handling.
* gnu/packages/patches/gnutls-guile-eintr-eagain.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[source]: Use it.
2021-07-31 15:44:58 +02:00
John Kehayias 2c0013916e
gnu: mesa: Update to 21.1.6.
* gnu/packages/gl.scm (mesa): Update to 21.1.6.
* gnu/packages/patches/mesa-skip-tests.patch: Remove cache_test.c as it is no
longer needed (test passes).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-31 12:08:32 +02:00
Kaelyn Takata 554e09254c
gnu: libdrm: Update to 2.4.107.
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.107, and change
libpciaccess to a propagated input as the pkg-config for libdrm_intel now
includes it in the libs.
[arguments]: Add conditional testing support to the replacement for the
standard check phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-31 11:30:41 +02:00
Marius Bakke f8458a2282
build-system/python: Handle missing metadata on Python 2.
* gnu/packages/aux-files/python/sanity-check.py: Catch the less specific
EnvironmentError rather than FileNotFoundError as the latter is Python 3
only.
2021-07-30 15:54:31 +02:00
Marius Bakke b029be2ee0
Merge branch 'master' into core-updates-frozen
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
2021-07-29 22:34:57 +02:00
Ricardo Wurmus ffb381856d
gnu: r-xcms: Update to 3.14.1.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1.
2021-07-29 20:20:18 +02:00
Ricardo Wurmus e06beb503c
gnu: r-reportingtools: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1.
2021-07-29 20:20:15 +02:00
Tobias Geerinckx-Rice c022c1e5b2
gnu: php: Update to 7.4.22 [security fixes].
* gnu/packages/php.scm (php): Update to 7.4.22.
2021-07-29 19:57:57 +02:00
Christopher Lemmer Webber 45235e67e4
system: Add (gnu system setuid).
I flubbed and somehow when including the patch series, this got dropped.
Oops... should fix things again.

* gnu/system/setuid.scm: New file.
2021-07-29 13:09:48 -04:00
Brice Waegeneire a85ec0bf69
services: Migrate to <setuid-program>.
* gnu/services/dbus.scm (dbus-setuid-programs, polkit-setuid-programs):
  Return setuid-programs.
* gnu/services/desktop.scm (enlightenment-setuid-programs): Return
 setuid-programs.
 (%desktop-services)[mount-setuid-helpers]: Use setuid-programs.
* gnu/services/docker.scm (singularity-setuid-programs): Return
 setuid-programs.
* gnu/services/xorg.scm(screen-locker-setuid-programs): Return
 setuid-programs.
* gnu/system.scm (%setuid-programs): Return setuid-programs.
* doc/guix.texi (Setuid Programs, operating-system Reference): Replace
  'list of G-expressions' with 'list of <setuid-program>'.
2021-07-29 11:32:48 -04:00
Chris Lemmer-Webber a7ac19851b
services: setuid: More configurable setuid support.
New record <setuid-program> with fields for setting the specific user
and group, as well as specifically selecting the setuid and setgid bits,
for a program within the setuid-program-service.

* gnu/services.scm (setuid-program-file-like-deprecated): New function.
  (setuid-program-service-type): Make use of
  setuid-program->activation-gexp.  Adjust the extend property to handle
  <setuid-program>.
* gnu/build/activation.scm (activate-setuid-programs): Update to expect a
  <setuid-record> list for each program entry.
* gnu/system.scm: (operating-system-setuid-programs): Renamed to
  %operating-system-setuid-programs and replace it with new procedure.
  (operating-system-default-essential-services,
  hurd-default-essential-services): Replace
  operating-system-setuid-programs with
  %operating-system-setuid-programs.
* gnu/system/setuid.scm: New file.
* doc/guix.texi (Setuid Programs): Document <setuid-program>.

Co-authored-by: Brice Waegeneire <brice@waegenei.re>
2021-07-29 11:32:08 -04:00
Ricardo Wurmus 5a1ce6cf70
gnu: r-matrixstats: Update to 0.60.0.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.60.0.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus 2c625a4969
gnu: r-e1071: Update to 1.7-8.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-8.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus 234549dbfe
gnu: r-protolite: Update to 2.1.1.
* gnu/packages/cran.scm (r-protolite): Update to 2.1.1.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus d9a5c8b7e3
gnu: r-lwgeom: Update to 0.2-7.
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-7.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus 03260ba1a4
gnu: r-mgsub: Update to 1.7.3.
* gnu/packages/cran.scm (r-mgsub): Update to 1.7.3.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus 1d2b6230da
gnu: r-matrixcalc: Update to 1.0-5.
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-5.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus a648eaa915
gnu: r-leiden: Update to 0.3.9.
* gnu/packages/cran.scm (r-leiden): Update to 0.3.9.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus 4b322909d4
gnu: r-dalex: Update to 2.3.0.
* gnu/packages/cran.scm (r-dalex): Update to 2.3.0.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus 75318afcdf
gnu: r-sf: Update to 1.0-2.
* gnu/packages/cran.scm (r-sf): Update to 1.0-2.
2021-07-29 17:11:09 +02:00
Ricardo Wurmus d30f6cd6cc
gnu: r-summarytools: Update to 1.0.0.
* gnu/packages/cran.scm (r-summarytools): Update to 1.0.0.
2021-07-29 17:11:08 +02:00
Ricardo Wurmus 1cc30d1eb6
gnu: r-ggeffects: Update to 1.1.1.
* gnu/packages/cran.scm (r-ggeffects): Update to 1.1.1.
2021-07-29 17:11:08 +02:00
Ricardo Wurmus 07726b8575
gnu: r-pillar: Update to 1.6.2.
* gnu/packages/cran.scm (r-pillar): Update to 1.6.2.
2021-07-29 17:11:08 +02:00
Ricardo Wurmus 5eac5eb748
gnu: r-vioplot: Update to 0.3.7.
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.7.
2021-07-29 17:11:08 +02:00
Ricardo Wurmus 244fda54d3
gnu: r-stringdist: Update to 0.9.7.
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.7.
2021-07-29 17:11:08 +02:00
Ricardo Wurmus b1b605fddb
gnu: r-broom: Update to 0.7.9.
* gnu/packages/cran.scm (r-broom): Update to 0.7.9.
2021-07-29 17:11:08 +02:00
Ricardo Wurmus fe6ad60e36
gnu: r-rpostgresql: Update to 0.7.
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7.
2021-07-29 17:11:08 +02:00
Ricardo Wurmus 74abd1ebe9
gnu: r-arrow: Update to 5.0.0.
* gnu/packages/cran.scm (r-arrow): Update to 5.0.0.
2021-07-29 17:11:08 +02:00
Ricardo Wurmus ef61998524
gnu: apache-arrow: Update to 5.0.0.
* gnu/packages/databases.scm (apache-arrow): Update to 5.0.0.
2021-07-29 17:11:08 +02:00
Marius Bakke bc55f3091b
gnu: util-linux: Explicitly depend on 'file'.
...instead of using the variant that happens to be in %FINAL-INPUTS.

* gnu/packages/linux.scm (util-linux)[inputs]: Add FILE.  While at it, remove
labels.
[native-inputs]: Remove labels.
2021-07-29 14:10:13 +02:00
Marius Bakke cdd3141f19
gnu: util-linux: Remove cross-compilation workaround.
* gnu/packages/linux.scm (util-linux)[arguments]: Look for /etc/services in
both NATIVE-INPUTS and INPUTS, instead of by input label.  Remove unused variable.
[inputs]: When cross-compiling, don't add NET-BASE.
2021-07-29 14:10:13 +02:00
Marius Bakke ec0a244417
gnu: util-linux: Update to 2.37.1.
This fixes an infinite loop in 'mkswap'; see
<https://bugzilla.redhat.com/show_bug.cgi?id=1971877>.

* gnu/packages/linux.scm (util-linux): Update to 2.37.1.
2021-07-29 14:10:13 +02:00
Ricardo Wurmus 8437710bbf
gnu: r-with-tests: Add missing TeX Live packages.
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Add
texlive-grfext and texlive-latex-l3backend to the texlive union.
2021-07-29 13:51:01 +02:00
Ricardo Wurmus ed84f6f869
gnu: Add texlive-grfext.
* gnu/packages/tex.scm (texlive-grfext): New variable.
2021-07-29 13:51:01 +02:00
Efraim Flashner b95fb85f59
gnu: vim-guix-vim: Update to 0.3.0.
* gnu/packages/vim.scm (vim-guix-vim): Update to 0.3.0.
[source]: Update source uri.
2021-07-29 14:46:41 +03:00
Efraim Flashner 4707ab2fc0
gnu: julia-weakrefstrings: Update to 1.1.0.
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): Update to 1.1.0.
2021-07-29 14:43:43 +03:00
Efraim Flashner 6bf32d1314
gnu: julia-typedtables: Update to 1.4.0.
* gnu/packages/julia-xyz.scm (julia-typedtables): Update to 1.4.0.
2021-07-29 14:43:43 +03:00
Efraim Flashner f5ec4cd9ac
gnu: julia-staticarrays: Update to 1.2.9.
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.9.
2021-07-29 14:43:43 +03:00
Efraim Flashner ace03e017c
gnu: julia-static: Update to 0.3.0.
* gnu/packages/julia-xyz.scm (julia-static): Update to 0.3.0.
2021-07-29 14:43:43 +03:00
Efraim Flashner bf796e1b8e
gnu: julia-sortingalgorithms: Update to 1.0.1.
* gnu/packages/julia-xyz.scm (julia-sortingalgorithms): Update to 1.0.1.
2021-07-29 14:43:42 +03:00
Efraim Flashner b9264f2870
gnu: julia-simpletraits: Update to 0.9.4.
* gnu/packages/julia-xyz.scm (julia-simpletraits): Update to 0.9.4.
2021-07-29 14:43:42 +03:00
Efraim Flashner 831ce9b94e
gnu: julia-recipespipeline: Update to 0.3.4.
* gnu/packages/julia-xyz.scm (julia-recipespipeline): Update to 0.3.4.
2021-07-29 14:43:42 +03:00
Efraim Flashner 230d77d958
gnu: julia-plotutils: Update to 1.0.11.
* gnu/packages/julia-xyz.scm (julia-plotutils): Update to 1.0.11.
2021-07-29 14:43:42 +03:00
Efraim Flashner c2305209c2
gnu: julia-offsetarrays: Update to 1.10.3.
* gnu/packages/julia-xyz.scm (julia-offsetarrays): Update to 1.10.3.
2021-07-29 14:43:42 +03:00
Efraim Flashner f70db25982
gnu: julia-mutablearithmetics: Update to 0.2.20.
* gnu/packages/julia-xyz.scm (julia-mutablearithmetics): Update to 0.2.20.
2021-07-29 14:43:42 +03:00
Efraim Flashner 3127f3731a
gnu: julia-matrixfactorizations: Update to 0.8.4.
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): Update to 0.8.4.
2021-07-29 14:43:42 +03:00
Efraim Flashner 5f432ed5a7
gnu: julia-lazyarrays: Update to 0.21.11.
* gnu/packages/julia-xyz.scm (julia-lazyarrays): Update to 0.21.11.
2021-07-29 14:43:41 +03:00
Efraim Flashner 6087d0dbd6
gnu: julia-json3: Update to 1.9.0.
* gnu/packages/julia-xyz.scm (julia-json3): Update to 1.9.0.
2021-07-29 14:43:41 +03:00
Efraim Flashner 4a69ab16ec
gnu: julia-irtools: Update to 0.4.3.
* gnu/packages/julia-xyz.scm (julia-irtools): Update to 0.4.3.
2021-07-29 14:43:41 +03:00
Efraim Flashner fa86b01662
gnu: julia-imagecore: Update to 0.9.1.
* gnu/packages/julia-xyz.scm (julia-imagecore): Update to 0.9.1.
2021-07-29 14:43:41 +03:00
Efraim Flashner a9292ceeca
gnu: julia-http: Update to 0.9.12.
* gnu/packages/julia-xyz.scm (julia-http): Update to 0.9.12.
2021-07-29 14:43:41 +03:00
Efraim Flashner 92929c2288
gnu: julia-genericschur: Update to 0.5.1.
* gnu/packages/julia-xyz.scm (julia-genericschur): Update to 0.5.1.
2021-07-29 14:43:41 +03:00
Efraim Flashner f7d79b9671
gnu: julia-finitediff: Update to 2.8.1.
* gnu/packages/julia-xyz.scm (julia-finitediff): Update to 2.8.1.
2021-07-29 14:43:40 +03:00
Efraim Flashner ebd7ca3f4b
gnu: julia-fillarrays: Update to 0.12.1.
* gnu/packages/julia-xyz.scm (julia-fillarrays): Update to 0.12.1.
2021-07-29 14:43:40 +03:00
Efraim Flashner 231387c3bb
gnu: julia-exprtools: Update to 0.1.6.
* gnu/packages/julia-xyz.scm (julia-exprtools): Update to 0.1.6.
2021-07-29 14:43:40 +03:00
Efraim Flashner 23dbed6f76
gnu: julia-dictionaries: Update to 0.3.10.
* gnu/packages/julia-xyz.scm (julia-dictionaries): Update to 0.3.10.
2021-07-29 14:43:40 +03:00
Efraim Flashner e076ed6eee
gnu: julia-dataapi: Update to 1.7.0.
* gnu/packages/julia-xyz.scm (julia-dataapi): Update to 1.7.0.
2021-07-29 14:43:40 +03:00
Efraim Flashner 57e5c907d9
gnu: julia-constructionbase: Update to 1.3.0.
* gnu/packages/julia-xyz.scm (julia-constructionbase): Update to 1.3.0.
2021-07-29 14:43:40 +03:00
Efraim Flashner 9cd7145bcd
gnu: julia-compat: Update to 3.32.0.
* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.32.0.
2021-07-29 14:43:40 +03:00
Efraim Flashner ebe8aa846e
gnu: julia-colorschemes: Update to 3.13.0.
* gnu/packages/julia-xyz.scm (julia-colorschemes): Update to 3.13.0.
2021-07-29 14:43:39 +03:00
Efraim Flashner b5df917439
gnu: julia-blockbandedmatrices: Update to 0.10.7.
* gnu/packages/julia-xyz.scm (julia-blockbandedmatrices): Update to 0.10.7.
2021-07-29 14:43:39 +03:00
Efraim Flashner f0398a070b
gnu: julia-blockarrays: Update to 0.16.3.
* gnu/packages/julia-xyz.scm (julia-blockarrays): Update to 0.16.3.
2021-07-29 14:43:39 +03:00
Efraim Flashner ad8c40407c
gnu: julia-benchmarktools: Update to 1.1.1.
* gnu/packages/julia-xyz.scm (julia-benchmarktools): Update to 1.1.1.
2021-07-29 14:43:39 +03:00
Efraim Flashner 5d45f7b1d5
gnu: julia-bandedmatrices: Update to 0.16.10.
* gnu/packages/julia-xyz.scm (julia-bandedmatrices): Update to 0.16.10.
2021-07-29 14:43:39 +03:00
Efraim Flashner af3699492e
gnu: julia-axisarrays: Update to 0.4.4.
* gnu/packages/julia-xyz.scm (julia-axisarrays): Update to 0.4.4.
2021-07-29 14:43:39 +03:00
Efraim Flashner 01546260b8
gnu: julia-arraylayouts: Update to 0.7.3.
* gnu/packages/julia-xyz.scm (julia-arraylayouts): Update to 0.7.3.
2021-07-29 14:43:38 +03:00
Efraim Flashner 7067111296
gnu: julia-arrayinterface: Update to 3.1.19.
* gnu/packages/julia-xyz.scm (julia-arrayinterface): Update to 3.1.19.
2021-07-29 14:43:38 +03:00
Efraim Flashner bfd92c357a
gnu: julia-interpolations: Update to 0.13.3.
* gnu/packages/julia-xyz.scm (julia-interpolations): Update to 0.13.3.
[propagated-inputs]: Add julia-requires.
[native-inputs]: Add julia-zygote.
2021-07-29 14:43:38 +03:00
Efraim Flashner f93a9835f3
gnu: julia-recursivearraytools: Update to 2.16.1.
* gnu/packages/julia-xyz.scm (julia-recursivearraytools): Update to 2.16.1.
[propagated-inputs]: Add julia-chainrulescore.
2021-07-29 14:43:38 +03:00
Efraim Flashner 6752fc153a
gnu: julia-imageinterminal: Udate to 0.4.7.
* gnu/packages/julia-xyz.scm (julia-imageinterminal): Update to 0.4.7.
[propagated-inputs]: Add julia-imagebase, julia-requires. Remove
julia-imagetransformations.
2021-07-29 14:43:38 +03:00
Efraim Flashner 0f15f77464
gnu: julia-ellipsisnotation: Adjust test suite for julia-1.6.
* gnu/packages/julia-xyz.scm (julia-ellipsisnotation)[arguments]: Add
phase to skip outdated test.
2021-07-29 14:43:38 +03:00
Efraim Flashner 8d787994e5
gnu: julia-zygote: Update to 0.6.17.
* gnu/packages/julia-xyz.scm (julia-zygote): Update to 0.6.17.
2021-07-29 14:43:38 +03:00
Efraim Flashner f6bc4657e1
gnu: julia-unitful: Update to 1.9.0.
* gnu/packages/julia-xyz.scm (julia-unitful): Update to 1.9.0.
2021-07-29 14:43:37 +03:00
Efraim Flashner 9fe69d78d6
gnu: julia-tables: Update to 1.4.4.
* gnu/packages/julia-xyz.scm (julia-tables): Update to 1.4.4.
2021-07-29 14:43:37 +03:00
Efraim Flashner 2d25b2f9b7
gnu: julia-staticarrays: Update to 1.2.8.
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.8.
2021-07-29 14:43:37 +03:00