4a8a184278
gnu: girara: Update to 0.3.6.
...
* gnu/packages/gtk.scm (girara): Update to 0.3.6.
2021-08-01 23:19:29 +02:00
be73c55ae5
gnu: sbcl-cl-libxml2: Remove duplicate input.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-libxml2)[native-inputs]: Remove SBCL-LIFT.
2021-08-01 23:19:29 +02:00
5c121be1f9
gnu: python-django: Update to 3.2.5 [fixes CVE-2021-35042].
...
* gnu/packages/django.scm (python-django): Update to 3.2.5.
2021-08-01 23:19:29 +02:00
3e5e10d51b
gnu: mg: Update to 20210609.
...
* gnu/packages/text-editors.scm (mg): Update to 20210609.
[source](snippet): Remove trailing #t.
2021-08-01 23:19:29 +02:00
6e99e113e6
gnu: emacs-ts: Update to 0.2.2.
...
* gnu/packages/emacs-xyz.scm (emacs-ts): Update to 0.2.2.
2021-08-01 20:57:47 +02:00
c044940a67
gnu: emacs-magit: Update to 3.2.0.
...
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.2.0.
2021-08-01 20:56:05 +02:00
9634f7f42e
gnu: emacs-eacl: Update to 2.1.0.
...
* gnu/packages/emacs-xyz.scm (emacs-eacl): Update to 2.1.0.
2021-08-01 20:54:14 +02:00
5b6447fcce
gnu: Add go-github-com-klauspost-compress.
...
* gnu/packages/golang.scm (go-github-com-klauspost-compress): New variable.
2021-08-01 19:46:58 +05:30
7aa2972bfa
gnu: Add go-github-com-flynn-noise.
...
* gnu/packages/golang.scm (go-github-com-flynn-noise): New variable.
2021-08-01 19:20:27 +05:30
c94683e017
gnu: Add go-golang-org-x-term.
...
* gnu/packages/golang.scm (go-golang-org-x-term): New variable.
2021-08-01 19:20:27 +05:30
42d9c3b24a
gnu: Add go-lukechampine-com-blake3.
...
* gnu/packages/golang.scm (go-lukechampine-com-blake3): New variable.
2021-08-01 19:20:26 +05:30
edaea8d2ac
gnu: Add go-github-com-dustin-go-humanize.
...
* gnu/packages/golang.scm (go-github-com-dustin-go-humanize): New variable.
2021-08-01 19:20:26 +05:30
344460bab4
gnu: Add go-github-com-davecgh-go-xdr.
...
* gnu/packages/golang.scm (go-github-com-davecgh-go-xdr): New variable.
2021-08-01 19:20:21 +05:30
fcba63f8b7
gnu: Add emacs-autocrypt.
...
* gnu/packages/emacs-xyz.scm (emacs-autocrypt): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-08-01 18:14:55 +05:30
5ab679f4da
gnu: Add libpst.
...
* gnu/packages/mail.scm (libpst): New variable.
2021-08-01 14:23:08 +02:00
42aee12103
gnu: scintilla: Update to 5.1.1.
...
* gnu/packages/text-editors.scm (scintilla): Update to 5.1.1.
2021-08-01 13:44:35 +02:00
532000024f
gnu: emacs-evil-nerd-commenter: Update to 3.5.5.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.5.5.
2021-08-01 13:23:14 +02:00
e916f9ab60
gnu: emacs-evil-matchit: Update to 2.3.13.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-matchit): Update to 2.3.13.
2021-08-01 13:19:44 +02:00
89d6664bab
gnu: emacs-evil-collection: Update to 0.0.6.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.6.
2021-08-01 13:18:16 +02:00
6e0eb82f21
gnu: emacs-perspective: Update to 2.16.
...
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.16.
2021-08-01 13:16:38 +02:00
dbbadb87b4
gnu: giac: Update to 1.7.0-23.
...
* gnu/packages/algebra.scm (giac): Update to 1.7.0-23.
2021-08-01 13:06:33 +02:00
c8bcef2598
gnu: sameboy: Update to 0.14.4.
...
* gnu/packages/emulators.scm (sameboy): Update to 0.14.4.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-01 12:58:03 +02:00
b2a5a180cf
gnu: glib-networking: Update to 2.68.1.
...
* gnu/packages/gnome.scm (glib-networking): Update to 2.68.1.
2021-07-31 23:46:17 +02:00
0a1a1ad213
gnu: glib-networking: Skip failing test.
...
* gnu/packages/patches/glib-networking-gnutls-binding.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (glib-networking)[source]: Use it.
2021-07-31 23:42:21 +02:00
9fb7269059
gnu: icedtea@1.13.13: Add 'file-name' field to the origins.
...
* gnu/packages/java.scm (icedtea-6)[native-inputs]: Add 'file-name'
field to all the origins.
2021-07-31 15:51:39 +02:00
69dde4e354
gnu: gnutls: Patch the Guile bindings for EINTR/EAGAIN handling.
...
* gnu/packages/patches/gnutls-guile-eintr-eagain.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[source]: Use it.
2021-07-31 15:44:58 +02:00
2c0013916e
gnu: mesa: Update to 21.1.6.
...
* gnu/packages/gl.scm (mesa): Update to 21.1.6.
* gnu/packages/patches/mesa-skip-tests.patch: Remove cache_test.c as it is no
longer needed (test passes).
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-31 12:08:32 +02:00
554e09254c
gnu: libdrm: Update to 2.4.107.
...
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.107, and change
libpciaccess to a propagated input as the pkg-config for libdrm_intel now
includes it in the libs.
[arguments]: Add conditional testing support to the replacement for the
standard check phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-31 11:30:41 +02:00
f8458a2282
build-system/python: Handle missing metadata on Python 2.
...
* gnu/packages/aux-files/python/sanity-check.py: Catch the less specific
EnvironmentError rather than FileNotFoundError as the latter is Python 3
only.
2021-07-30 15:54:31 +02:00
b029be2ee0
Merge branch 'master' into core-updates-frozen
...
Conflicts:
gnu/packages/bioinformatics.scm
gnu/packages/cmake.scm
gnu/packages/curl.scm
gnu/packages/emacs-xyz.scm
gnu/packages/gpodder.scm
gnu/packages/music.scm
gnu/packages/patches/glibc-bootstrap-system.patch
gnu/packages/python-xyz.scm
gnu/packages/shells.scm
gnu/packages/statistics.scm
2021-07-29 22:34:57 +02:00
ffb381856d
gnu: r-xcms: Update to 3.14.1.
...
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1.
2021-07-29 20:20:18 +02:00
e06beb503c
gnu: r-reportingtools: Update to 2.32.1.
...
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1.
2021-07-29 20:20:15 +02:00
c022c1e5b2
gnu: php: Update to 7.4.22 [security fixes].
...
* gnu/packages/php.scm (php): Update to 7.4.22.
2021-07-29 19:57:57 +02:00
45235e67e4
system: Add (gnu system setuid).
...
I flubbed and somehow when including the patch series, this got dropped.
Oops... should fix things again.
* gnu/system/setuid.scm: New file.
2021-07-29 13:09:48 -04:00
a85ec0bf69
services: Migrate to <setuid-program>.
...
* gnu/services/dbus.scm (dbus-setuid-programs, polkit-setuid-programs):
Return setuid-programs.
* gnu/services/desktop.scm (enlightenment-setuid-programs): Return
setuid-programs.
(%desktop-services)[mount-setuid-helpers]: Use setuid-programs.
* gnu/services/docker.scm (singularity-setuid-programs): Return
setuid-programs.
* gnu/services/xorg.scm(screen-locker-setuid-programs): Return
setuid-programs.
* gnu/system.scm (%setuid-programs): Return setuid-programs.
* doc/guix.texi (Setuid Programs, operating-system Reference): Replace
'list of G-expressions' with 'list of <setuid-program>'.
2021-07-29 11:32:48 -04:00
a7ac19851b
services: setuid: More configurable setuid support.
...
New record <setuid-program> with fields for setting the specific user
and group, as well as specifically selecting the setuid and setgid bits,
for a program within the setuid-program-service.
* gnu/services.scm (setuid-program-file-like-deprecated): New function.
(setuid-program-service-type): Make use of
setuid-program->activation-gexp. Adjust the extend property to handle
<setuid-program>.
* gnu/build/activation.scm (activate-setuid-programs): Update to expect a
<setuid-record> list for each program entry.
* gnu/system.scm: (operating-system-setuid-programs): Renamed to
%operating-system-setuid-programs and replace it with new procedure.
(operating-system-default-essential-services,
hurd-default-essential-services): Replace
operating-system-setuid-programs with
%operating-system-setuid-programs.
* gnu/system/setuid.scm: New file.
* doc/guix.texi (Setuid Programs): Document <setuid-program>.
Co-authored-by: Brice Waegeneire <brice@waegenei.re>
2021-07-29 11:32:08 -04:00
5a1ce6cf70
gnu: r-matrixstats: Update to 0.60.0.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.60.0.
2021-07-29 17:11:09 +02:00
2c625a4969
gnu: r-e1071: Update to 1.7-8.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-8.
2021-07-29 17:11:09 +02:00
234549dbfe
gnu: r-protolite: Update to 2.1.1.
...
* gnu/packages/cran.scm (r-protolite): Update to 2.1.1.
2021-07-29 17:11:09 +02:00
d9a5c8b7e3
gnu: r-lwgeom: Update to 0.2-7.
...
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-7.
2021-07-29 17:11:09 +02:00
03260ba1a4
gnu: r-mgsub: Update to 1.7.3.
...
* gnu/packages/cran.scm (r-mgsub): Update to 1.7.3.
2021-07-29 17:11:09 +02:00
1d2b6230da
gnu: r-matrixcalc: Update to 1.0-5.
...
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-5.
2021-07-29 17:11:09 +02:00
a648eaa915
gnu: r-leiden: Update to 0.3.9.
...
* gnu/packages/cran.scm (r-leiden): Update to 0.3.9.
2021-07-29 17:11:09 +02:00
4b322909d4
gnu: r-dalex: Update to 2.3.0.
...
* gnu/packages/cran.scm (r-dalex): Update to 2.3.0.
2021-07-29 17:11:09 +02:00
75318afcdf
gnu: r-sf: Update to 1.0-2.
...
* gnu/packages/cran.scm (r-sf): Update to 1.0-2.
2021-07-29 17:11:09 +02:00
d30f6cd6cc
gnu: r-summarytools: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-summarytools): Update to 1.0.0.
2021-07-29 17:11:08 +02:00
1cc30d1eb6
gnu: r-ggeffects: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-ggeffects): Update to 1.1.1.
2021-07-29 17:11:08 +02:00
07726b8575
gnu: r-pillar: Update to 1.6.2.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.6.2.
2021-07-29 17:11:08 +02:00
5eac5eb748
gnu: r-vioplot: Update to 0.3.7.
...
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.7.
2021-07-29 17:11:08 +02:00
244fda54d3
gnu: r-stringdist: Update to 0.9.7.
...
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.7.
2021-07-29 17:11:08 +02:00
b1b605fddb
gnu: r-broom: Update to 0.7.9.
...
* gnu/packages/cran.scm (r-broom): Update to 0.7.9.
2021-07-29 17:11:08 +02:00
fe6ad60e36
gnu: r-rpostgresql: Update to 0.7.
...
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7.
2021-07-29 17:11:08 +02:00
74abd1ebe9
gnu: r-arrow: Update to 5.0.0.
...
* gnu/packages/cran.scm (r-arrow): Update to 5.0.0.
2021-07-29 17:11:08 +02:00
ef61998524
gnu: apache-arrow: Update to 5.0.0.
...
* gnu/packages/databases.scm (apache-arrow): Update to 5.0.0.
2021-07-29 17:11:08 +02:00
bc55f3091b
gnu: util-linux: Explicitly depend on 'file'.
...
...instead of using the variant that happens to be in %FINAL-INPUTS.
* gnu/packages/linux.scm (util-linux)[inputs]: Add FILE. While at it, remove
labels.
[native-inputs]: Remove labels.
2021-07-29 14:10:13 +02:00
cdd3141f19
gnu: util-linux: Remove cross-compilation workaround.
...
* gnu/packages/linux.scm (util-linux)[arguments]: Look for /etc/services in
both NATIVE-INPUTS and INPUTS, instead of by input label. Remove unused variable.
[inputs]: When cross-compiling, don't add NET-BASE.
2021-07-29 14:10:13 +02:00
ec0a244417
gnu: util-linux: Update to 2.37.1.
...
This fixes an infinite loop in 'mkswap'; see
<https://bugzilla.redhat.com/show_bug.cgi?id=1971877 >.
* gnu/packages/linux.scm (util-linux): Update to 2.37.1.
2021-07-29 14:10:13 +02:00
8437710bbf
gnu: r-with-tests: Add missing TeX Live packages.
...
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Add
texlive-grfext and texlive-latex-l3backend to the texlive union.
2021-07-29 13:51:01 +02:00
ed84f6f869
gnu: Add texlive-grfext.
...
* gnu/packages/tex.scm (texlive-grfext): New variable.
2021-07-29 13:51:01 +02:00
b95fb85f59
gnu: vim-guix-vim: Update to 0.3.0.
...
* gnu/packages/vim.scm (vim-guix-vim): Update to 0.3.0.
[source]: Update source uri.
2021-07-29 14:46:41 +03:00
4707ab2fc0
gnu: julia-weakrefstrings: Update to 1.1.0.
...
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): Update to 1.1.0.
2021-07-29 14:43:43 +03:00
6bf32d1314
gnu: julia-typedtables: Update to 1.4.0.
...
* gnu/packages/julia-xyz.scm (julia-typedtables): Update to 1.4.0.
2021-07-29 14:43:43 +03:00
f5ec4cd9ac
gnu: julia-staticarrays: Update to 1.2.9.
...
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.9.
2021-07-29 14:43:43 +03:00
ace03e017c
gnu: julia-static: Update to 0.3.0.
...
* gnu/packages/julia-xyz.scm (julia-static): Update to 0.3.0.
2021-07-29 14:43:43 +03:00
bf796e1b8e
gnu: julia-sortingalgorithms: Update to 1.0.1.
...
* gnu/packages/julia-xyz.scm (julia-sortingalgorithms): Update to 1.0.1.
2021-07-29 14:43:42 +03:00
b9264f2870
gnu: julia-simpletraits: Update to 0.9.4.
...
* gnu/packages/julia-xyz.scm (julia-simpletraits): Update to 0.9.4.
2021-07-29 14:43:42 +03:00
831ce9b94e
gnu: julia-recipespipeline: Update to 0.3.4.
...
* gnu/packages/julia-xyz.scm (julia-recipespipeline): Update to 0.3.4.
2021-07-29 14:43:42 +03:00
230d77d958
gnu: julia-plotutils: Update to 1.0.11.
...
* gnu/packages/julia-xyz.scm (julia-plotutils): Update to 1.0.11.
2021-07-29 14:43:42 +03:00
c2305209c2
gnu: julia-offsetarrays: Update to 1.10.3.
...
* gnu/packages/julia-xyz.scm (julia-offsetarrays): Update to 1.10.3.
2021-07-29 14:43:42 +03:00
f70db25982
gnu: julia-mutablearithmetics: Update to 0.2.20.
...
* gnu/packages/julia-xyz.scm (julia-mutablearithmetics): Update to 0.2.20.
2021-07-29 14:43:42 +03:00
3127f3731a
gnu: julia-matrixfactorizations: Update to 0.8.4.
...
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): Update to 0.8.4.
2021-07-29 14:43:42 +03:00
5f432ed5a7
gnu: julia-lazyarrays: Update to 0.21.11.
...
* gnu/packages/julia-xyz.scm (julia-lazyarrays): Update to 0.21.11.
2021-07-29 14:43:41 +03:00
6087d0dbd6
gnu: julia-json3: Update to 1.9.0.
...
* gnu/packages/julia-xyz.scm (julia-json3): Update to 1.9.0.
2021-07-29 14:43:41 +03:00
4a69ab16ec
gnu: julia-irtools: Update to 0.4.3.
...
* gnu/packages/julia-xyz.scm (julia-irtools): Update to 0.4.3.
2021-07-29 14:43:41 +03:00
fa86b01662
gnu: julia-imagecore: Update to 0.9.1.
...
* gnu/packages/julia-xyz.scm (julia-imagecore): Update to 0.9.1.
2021-07-29 14:43:41 +03:00
a9292ceeca
gnu: julia-http: Update to 0.9.12.
...
* gnu/packages/julia-xyz.scm (julia-http): Update to 0.9.12.
2021-07-29 14:43:41 +03:00
92929c2288
gnu: julia-genericschur: Update to 0.5.1.
...
* gnu/packages/julia-xyz.scm (julia-genericschur): Update to 0.5.1.
2021-07-29 14:43:41 +03:00
f7d79b9671
gnu: julia-finitediff: Update to 2.8.1.
...
* gnu/packages/julia-xyz.scm (julia-finitediff): Update to 2.8.1.
2021-07-29 14:43:40 +03:00
ebd7ca3f4b
gnu: julia-fillarrays: Update to 0.12.1.
...
* gnu/packages/julia-xyz.scm (julia-fillarrays): Update to 0.12.1.
2021-07-29 14:43:40 +03:00
231387c3bb
gnu: julia-exprtools: Update to 0.1.6.
...
* gnu/packages/julia-xyz.scm (julia-exprtools): Update to 0.1.6.
2021-07-29 14:43:40 +03:00
23dbed6f76
gnu: julia-dictionaries: Update to 0.3.10.
...
* gnu/packages/julia-xyz.scm (julia-dictionaries): Update to 0.3.10.
2021-07-29 14:43:40 +03:00
e076ed6eee
gnu: julia-dataapi: Update to 1.7.0.
...
* gnu/packages/julia-xyz.scm (julia-dataapi): Update to 1.7.0.
2021-07-29 14:43:40 +03:00
57e5c907d9
gnu: julia-constructionbase: Update to 1.3.0.
...
* gnu/packages/julia-xyz.scm (julia-constructionbase): Update to 1.3.0.
2021-07-29 14:43:40 +03:00
9cd7145bcd
gnu: julia-compat: Update to 3.32.0.
...
* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.32.0.
2021-07-29 14:43:40 +03:00
ebe8aa846e
gnu: julia-colorschemes: Update to 3.13.0.
...
* gnu/packages/julia-xyz.scm (julia-colorschemes): Update to 3.13.0.
2021-07-29 14:43:39 +03:00
b5df917439
gnu: julia-blockbandedmatrices: Update to 0.10.7.
...
* gnu/packages/julia-xyz.scm (julia-blockbandedmatrices): Update to 0.10.7.
2021-07-29 14:43:39 +03:00
f0398a070b
gnu: julia-blockarrays: Update to 0.16.3.
...
* gnu/packages/julia-xyz.scm (julia-blockarrays): Update to 0.16.3.
2021-07-29 14:43:39 +03:00
ad8c40407c
gnu: julia-benchmarktools: Update to 1.1.1.
...
* gnu/packages/julia-xyz.scm (julia-benchmarktools): Update to 1.1.1.
2021-07-29 14:43:39 +03:00
5d45f7b1d5
gnu: julia-bandedmatrices: Update to 0.16.10.
...
* gnu/packages/julia-xyz.scm (julia-bandedmatrices): Update to 0.16.10.
2021-07-29 14:43:39 +03:00
af3699492e
gnu: julia-axisarrays: Update to 0.4.4.
...
* gnu/packages/julia-xyz.scm (julia-axisarrays): Update to 0.4.4.
2021-07-29 14:43:39 +03:00
01546260b8
gnu: julia-arraylayouts: Update to 0.7.3.
...
* gnu/packages/julia-xyz.scm (julia-arraylayouts): Update to 0.7.3.
2021-07-29 14:43:38 +03:00
7067111296
gnu: julia-arrayinterface: Update to 3.1.19.
...
* gnu/packages/julia-xyz.scm (julia-arrayinterface): Update to 3.1.19.
2021-07-29 14:43:38 +03:00
bfd92c357a
gnu: julia-interpolations: Update to 0.13.3.
...
* gnu/packages/julia-xyz.scm (julia-interpolations): Update to 0.13.3.
[propagated-inputs]: Add julia-requires.
[native-inputs]: Add julia-zygote.
2021-07-29 14:43:38 +03:00
f93a9835f3
gnu: julia-recursivearraytools: Update to 2.16.1.
...
* gnu/packages/julia-xyz.scm (julia-recursivearraytools): Update to 2.16.1.
[propagated-inputs]: Add julia-chainrulescore.
2021-07-29 14:43:38 +03:00
6752fc153a
gnu: julia-imageinterminal: Udate to 0.4.7.
...
* gnu/packages/julia-xyz.scm (julia-imageinterminal): Update to 0.4.7.
[propagated-inputs]: Add julia-imagebase, julia-requires. Remove
julia-imagetransformations.
2021-07-29 14:43:38 +03:00
0f15f77464
gnu: julia-ellipsisnotation: Adjust test suite for julia-1.6.
...
* gnu/packages/julia-xyz.scm (julia-ellipsisnotation)[arguments]: Add
phase to skip outdated test.
2021-07-29 14:43:38 +03:00
8d787994e5
gnu: julia-zygote: Update to 0.6.17.
...
* gnu/packages/julia-xyz.scm (julia-zygote): Update to 0.6.17.
2021-07-29 14:43:38 +03:00
f6bc4657e1
gnu: julia-unitful: Update to 1.9.0.
...
* gnu/packages/julia-xyz.scm (julia-unitful): Update to 1.9.0.
2021-07-29 14:43:37 +03:00
9fe69d78d6
gnu: julia-tables: Update to 1.4.4.
...
* gnu/packages/julia-xyz.scm (julia-tables): Update to 1.4.4.
2021-07-29 14:43:37 +03:00
2d25b2f9b7
gnu: julia-staticarrays: Update to 1.2.8.
...
* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.8.
2021-07-29 14:43:37 +03:00
071f036625
gnu: julia-finitedifferences: Update to 0.12.17.
...
* gnu/packages/julia-xyz.scm (julia-finitedifferences): Update to 0.12.17.
2021-07-29 14:43:37 +03:00
e477487e00
gnu: julia-chainrulestestutils: Update to 1.0.0.
...
* gnu/packages/julia-xyz.scm (julia-chainrulestestutils): Update to 1.0.0.
2021-07-29 14:43:37 +03:00
038a7dd56b
gnu: julia-chainrulescore: Update to 1.0.2.
...
* gnu/packages/julia-xyz.scm (julia-chainrulescore): Update to 1.0.2.
2021-07-29 14:43:37 +03:00
4a79a39b1c
gnu: julia-chainrules: Update to 1.1.0.
...
* gnu/packages/julia-xyz.scm (julia-chainrules): Update to 1.1.0.
2021-07-29 14:43:31 +03:00
228763316a
gnu: julia-specialfunctions: Update to 1.6.0.
...
* gnu/packages/julia-xyz.scm (julia-specialfunctions): Update to 1.6.0.
[propagated-inputs]: Add julia-logexpfunctions.
2021-07-29 14:43:30 +03:00
226af89e58
gnu: julia-fuzzycompletions: Adjust test suite for julia-1.6.
...
* gnu/packages/julia-xyz.scm (julia-fuzzycompletions)[arguments]: Add
phase to skip failing test.
2021-07-29 14:43:30 +03:00
d09223edab
gnu: julia-rotations: Update to 1.0.2-1.b599102.
...
* gnu/packages/julia-xyz.scm (julia-rotations): Update to 1.0.2-1.b599102.
2021-07-29 14:43:30 +03:00
1cc36f5efe
gnu: julia-nnlib: Update to 0.7.25.
...
* gnu/packages/julia-xyz.scm (julia-nnlib): Update to 0.7.25.
[arguments]: Skip tests.
2021-07-29 14:43:30 +03:00
7975a64b6d
gnu: julia-tracker: Patch for julia-1.6.
...
* gnu/packages/julia-xyz.scm (julia-tracker)[source]: Add patch.
* gnu/packages/patches/julia-tracker-16-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-07-29 14:43:27 +03:00
74dad2c75a
gnu: python-pikepdf: Update to 2.16.1.
...
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.16.1.
2021-07-29 10:28:08 +02:00
01cc360cf5
gnu: emacs-csharp-mode: Update to 0.12.0.
...
* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 0.12.0.
2021-07-29 10:26:31 +02:00
c56df3b946
gnu: python2-pygraphviz: Remove it.
...
* gnu/packages/graphviz.scm (python2-pygraphviz): Remove it.
2021-07-29 10:24:50 +02:00
3ef3f791f9
gnu: emacs-nswbuff: Update to 1.3.
...
* gnu/packages/emacs-xyz.scm (emacs-nswbuff): Update to 1.3.
2021-07-29 10:24:44 +02:00
370cb92eaa
gnu: python-pygraphviz: Update to 1.7.
...
* gnu/packages/graphviz.scm (python-pygraphviz): Update to 1.7.
[arguments]: Remove #:configure-flags that are no longer supported.
[inputs]: Use the latest graphviz package.
[native-inputs]: Add python-pytest.
2021-07-29 10:23:52 +02:00
e4e9037402
gnu: snap: Update to 6.9.0.
...
* gnu/packages/education.scm (snap): Update to 6.9.0.
2021-07-29 10:21:49 +02:00
87b409d7e9
gnu: mame: Update to 0.234.
...
* gnu/packages/emulators.scm (mame): Update to 0.234.
2021-07-29 10:14:29 +02:00
3a59d722c1
gnu: emacs-solaire-mode: Update to 2.0.2.
...
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): Update to 2.0.2.
2021-07-29 09:44:57 +02:00
79a99af640
gnu: emacs-org-fragtog: Update to 0.3.3.
...
* gnu/packages/emacs-xyz.scm (emacs-org-fragtog): Update to 0.3.3.
2021-07-29 09:44:11 +02:00
59dd6dfb91
gnu: Add emacs-nasm-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-nasm-mode): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-29 09:40:08 +02:00
b4c86e6dbc
gnu: graphviz-2.38: Fix build failure.
...
* gnu/packages/graphviz.scm
(graphviz-2.38)[arguments]<#:phases>: Make this a G-exp.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-29 09:30:32 +02:00
7af47b876a
gnu: linux-libre 4.4: Update to 4.4.277.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.277.
(linux-libre-4.4-pristine-source): Update hash.
2021-07-28 17:18:04 -04:00
7c31c37676
gnu: linux-libre 4.9: Update to 4.9.277.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.277.
(linux-libre-4.9-pristine-source): Update hash.
2021-07-28 17:18:04 -04:00
f836b47eba
gnu: linux-libre 4.14: Update to 4.14.241.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.241.
(linux-libre-4.14-pristine-source): Update hash.
2021-07-28 17:18:04 -04:00
278fc1e85d
gnu: linux-libre 4.19: Update to 4.19.199.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.199.
(linux-libre-4.19-pristine-source): Update hash.
2021-07-28 17:18:03 -04:00
7400d3ebbe
gnu: linux-libre 5.4: Update to 5.4.136.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.136.
(linux-libre-5.4-pristine-source): Update hash.
2021-07-28 17:18:03 -04:00
a137816cc7
gnu: linux-libre 5.10: Update to 5.10.54.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.54.
(linux-libre-5.10-pristine-source): Update hash.
2021-07-28 17:18:03 -04:00
4f108e4e5c
gnu: linux-libre: Update to 5.13.6.
...
* gnu/packages/linux.scm (linux-libre-5.12-version, deblob-scripts-5.12
linux-libre-5.12-pristine-source, linux-libre-5.12-source,
linux-libre-headers-5.12, linux-libre-5.12): Remove variables.
(linux-libre-version, linux-libre-pristine-source, linux-libre-source,
linux-libre): Update to the 5.13 kernel series.
(linux-libre-with-bpf): Update to 5.13 kernel series.
* gnu/packages/aux-files/linux-libre/5.12-arm.conf,
gnu/packages/aux-files/linux-libre/5.12-arm64.conf,
gnu/packages/aux-files/linux-libre/5.12-i686.conf,
gnu/packages/aux-files/linux-libre/5.12-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
2021-07-28 17:18:02 -04:00
a32241fcda
gnu: r-catalyst: Update to 1.16.2.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.2.
2021-07-28 22:26:56 +02:00
9d7eb480f8
gnu: r-mixomics: Update to 6.16.2.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.2.
2021-07-28 22:26:56 +02:00
d0d3637c92
gnu: r-rsubread: Update to 2.6.4.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.4.
2021-07-28 22:26:56 +02:00
8d9626dd7d
gnu: r-annotatr: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.18.1.
2021-07-28 22:26:56 +02:00
73fa220b43
gnu: r-motifbreakr: Update to 2.6.1.
...
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.6.1.
2021-07-28 22:26:55 +02:00
336b110f69
gnu: r-scone: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-scone): Update to 1.16.1.
2021-07-28 22:26:55 +02:00
fd0851ee97
gnu: r-chippeakanno: Update to 3.26.2.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.2.
2021-07-28 22:26:55 +02:00
acc62073be
gnu: r-ensembldb: Update to 2.16.3.
...
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.3.
2021-07-28 22:26:55 +02:00
e2ca38e611
gnu: r-ranger: Update to 0.13.1.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.13.1.
2021-07-28 22:26:55 +02:00
8934c48d41
gnu: r-blob: Update to 1.2.2.
...
* gnu/packages/statistics.scm (r-blob): Update to 1.2.2.
2021-07-28 22:26:55 +02:00
a30bcf6600
gnu: r-rcpparmadillo: Update to 0.10.6.0.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.6.0.0.
2021-07-28 22:26:55 +02:00
92c837f426
gnu: r-readr: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-readr): Update to 2.0.0.
[propagated-inputs]: Remove r-bh; add r-tzdb and r-vroom.
2021-07-28 22:26:55 +02:00
8c7483196a
gnu: r-tibble: Update to 3.1.3.
...
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.3.
2021-07-28 22:26:55 +02:00
ee2bae9385
gnu: r-pryr: Update to 0.1.5.
...
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.5.
[propagated-inputs]: Add r-lobstr and r-rcpp.
[native-inputs]: Remove r-rcpp.
2021-07-28 22:26:55 +02:00
5fb96b16a4
gnu: r-stringi: Update to 1.7.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.3.
2021-07-28 22:26:55 +02:00
b33be7b772
gnu: r-vroom: Update to 1.5.3.
...
* gnu/packages/cran.scm (r-vroom): Update to 1.5.3.
2021-07-28 22:26:55 +02:00
7f244ccacb
gnu: r-tzdb: Update to 0.1.2.
...
* gnu/packages/cran.scm (r-tzdb): Update to 0.1.2.
2021-07-28 22:26:55 +02:00
42085a60bf
gnu: r-readtext: Update to 0.81.
...
* gnu/packages/cran.scm (r-readtext): Update to 0.81.
2021-07-28 22:26:55 +02:00
36e993e302
gnu: r-mlr3misc: Update to 0.9.3.
...
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.3.
[propagated-inputs]: Add r-digest.
2021-07-28 22:26:54 +02:00
0f5b85ba51
gnu: r-lpme: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-lpme): Update to 1.1.2.
2021-07-28 22:26:54 +02:00
6833c0086c
gnu: r-phangorn: Update to 2.7.1.
...
* gnu/packages/cran.scm (r-phangorn): Update to 2.7.1.
2021-07-28 22:26:54 +02:00
1b06cf529a
gnu: r-modeldata: Update to 0.1.1.
...
* gnu/packages/cran.scm (r-modeldata): Update to 0.1.1.
2021-07-28 22:26:54 +02:00
5fe6129c66
gnu: r-parsnip: Update to 0.1.7.
...
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.7.
[propagated-inputs]: Add r-hardhat.
2021-07-28 22:26:54 +02:00
5ceaaeca08
gnu: r-workflowsets: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-workflowsets): Update to 0.1.0.
[propagated-inputs]: Add r-hardhat and r-lifecycle.
2021-07-28 22:26:54 +02:00
ff971f4add
gnu: r-tune: Update to 0.1.6.
...
* gnu/packages/cran.scm (r-tune): Update to 0.1.6.
[propagated-inputs]: Add r-hardhat, r-lifecycle, and r-withr.
2021-07-28 22:26:54 +02:00
260d29bf76
gnu: r-workflows: Update to 0.2.3.
...
* gnu/packages/cran.scm (r-workflows): Update to 0.2.3.
[propagated-inputs]: Add r-lifecycle.
2021-07-28 22:26:54 +02:00
5fa0448590
gnu: r-spatstat-linnet: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.3-0.
[propagated-inputs]: Add r-spatstat-sparse.
2021-07-28 22:26:54 +02:00
d3b8b6703c
gnu: r-spatstat-core: Update to 2.3-0.
...
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.3-0.
2021-07-28 22:26:53 +02:00
9a5901e0ad
gnu: r-spatstat-geom: Update to 2.2-2.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.2-2.
2021-07-28 22:26:53 +02:00
7b41c93061
gnu: r-hardhat: Update to 0.1.6.
...
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.6.
2021-07-28 22:26:53 +02:00
35f9a754d8
gnu: r-isoband: Update to 0.2.5.
...
* gnu/packages/cran.scm (r-isoband): Update to 0.2.5.
2021-07-28 22:26:53 +02:00
49979bf735
gnu: r-seewave: Update to 2.1.8.
...
* gnu/packages/cran.scm (r-seewave): Update to 2.1.8.
2021-07-28 22:26:53 +02:00
03e4676138
gnu: r-showtext: Update to 0.9-3.
...
* gnu/packages/cran.scm (r-showtext): Update to 0.9-3.
2021-07-28 22:26:53 +02:00
73871946a1
gnu: r-sysfonts: Update to 0.8.4.
...
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.4.
2021-07-28 22:26:53 +02:00
c1919dacf4
gnu: r-styler: Update to 1.5.1.
...
* gnu/packages/cran.scm (r-styler): Update to 1.5.1.
2021-07-28 22:26:53 +02:00
b21351870a
gnu: r-rttf2pt1: Update to 1.3.9.
...
* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.9.
2021-07-28 22:26:53 +02:00
d5e5809b94
gnu: r-adegenet: Update to 2.1.4.
...
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.4.
2021-07-28 22:26:52 +02:00
c84a2c1209
gnu: r-wk: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-wk): Update to 0.5.0.
2021-07-28 22:26:52 +02:00
d57de3da9c
gnu: r-compositions: Update to 2.0-2.
...
* gnu/packages/cran.scm (r-compositions): Update to 2.0-2.
2021-07-28 22:26:52 +02:00
f04f40880c
gnu: r-parallelly: Update to 1.27.0.
...
* gnu/packages/cran.scm (r-parallelly): Update to 1.27.0.
2021-07-28 22:26:52 +02:00
a6044a7573
gnu: r-rgl: Update to 0.107.10.
...
* gnu/packages/cran.scm (r-rgl): Update to 0.107.10.
[propagated-inputs]: Remove r-manipulatewidget and r-shiny.
2021-07-28 22:26:52 +02:00
c210531551
gnu: r-afex: Update to 1.0-1.
...
* gnu/packages/cran.scm (r-afex): Update to 1.0-1.
2021-07-28 22:26:52 +02:00
40648a1e20
gnu: r-credentials: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-credentials): Update to 1.3.1.
2021-07-28 22:26:52 +02:00
9e56bb33d5
gnu: r-sjplot: Update to 2.8.9.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.9.
[propagated-inputs]: Add r-datawizard.
2021-07-28 22:26:52 +02:00
ce8738a194
gnu: r-performance: Update to 0.7.3.
...
* gnu/packages/cran.scm (r-performance): Update to 0.7.3.
[propagated-inputs]: Add r-datawizard.
2021-07-28 22:26:52 +02:00
7a8081f23e
gnu: r-bayestestr: Update to 0.10.5.
...
* gnu/packages/cran.scm (r-bayestestr): Update to 0.10.5.
[propagated-inputs]: Add r-datawizard.
2021-07-28 22:26:51 +02:00
4590f8b338
gnu: r-glmmtmb: Update to 1.1.2.
...
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.2.
2021-07-28 22:26:51 +02:00
0af4e95b33
gnu: r-survey: Update to 4.1-1.
...
* gnu/packages/cran.scm (r-survey): Update to 4.1-1.
2021-07-28 22:26:51 +02:00
dce011239f
gnu: r-doby: Update to 4.6.11.
...
* gnu/packages/cran.scm (r-doby): Update to 4.6.11.
2021-07-28 22:26:23 +02:00
c633e5f40a
gnu: r-flextable: Update to 0.6.7.
...
* gnu/packages/cran.scm (r-flextable): Update to 0.6.7.
2021-07-28 22:26:23 +02:00
8816d7e130
gnu: r-officer: Update to 0.3.19.
...
* gnu/packages/cran.scm (r-officer): Update to 0.3.19.
2021-07-28 22:26:23 +02:00
3bc970802b
gnu: r-renv: Update to 0.14.0.
...
* gnu/packages/cran.scm (r-renv): Update to 0.14.0.
2021-07-28 22:26:23 +02:00
db54fbe2b1
gnu: r-rastervis: Update to 0.50.3.
...
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.3.
2021-07-28 22:26:23 +02:00
1ba8c81f97
gnu: r-vim: Update to 6.1.1.
...
* gnu/packages/cran.scm (r-vim): Update to 6.1.1.
2021-07-28 22:26:23 +02:00
76211cbc27
gnu: r-utf8: Update to 1.2.2.
...
* gnu/packages/cran.scm (r-utf8): Update to 1.2.2.
[native-inputs]: Add r-rmarkdown.
2021-07-28 22:26:23 +02:00
165ecfb477
gnu: r-cli: Update to 3.0.1.
...
* gnu/packages/cran.scm (r-cli): Update to 3.0.1.
2021-07-28 22:26:23 +02:00
57f04c64bc
gnu: r-laplacesdemon: Update to 16.1.6.
...
* gnu/packages/cran.scm (r-laplacesdemon): Update to 16.1.6.
2021-07-28 22:26:23 +02:00
efaa549993
gnu: r-fastmatch: Update to 1.1-3.
...
* gnu/packages/cran.scm (r-fastmatch): Update to 1.1-3.
2021-07-28 22:26:23 +02:00
e1a57fcdfa
gnu: r-jpeg: Update to 0.1-9.
...
* gnu/packages/cran.scm (r-jpeg): Update to 0.1-9.
2021-07-28 22:26:23 +02:00
16c3ebaf14
gnu: r-rvest: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-rvest): Update to 1.0.1.
2021-07-28 22:26:23 +02:00
24ad9180fe
gnu: r-ggpp: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.1.
[propagated-inputs]: Remove r-generics and r-plyr.
2021-07-28 22:26:22 +02:00
55a8d2f369
gnu: r-googlesheets4: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.0.0.
[propagated-inputs]: Remove r-lifecycle; add r-cli.
2021-07-28 22:26:22 +02:00
6e27f274b2
gnu: Add r-lobstr.
...
* gnu/packages/cran.scm (r-lobstr): New variable.
2021-07-28 22:26:22 +02:00
f39deacd21
gnu: Add r-datawizard.
...
* gnu/packages/cran.scm (r-datawizard): New variable.
2021-07-28 22:26:22 +02:00
9ac9bc6051
gnu: r-with-tests: Hardcode path to coreutils’ rm
...
When running R in a container like this
guix environment --no-cwd -C --ad-hoc r-minimal -- Rscript -e 'Sys.timezone()'
it would print an additional line
sh: rm: command not found
before exiting.
* gnu/packages/statistics.scm (r-with-tests) [#:phases]: Add substitute*
to patch call to `rm` and rename phase to reflect what it does now.
2021-07-28 22:26:19 +02:00
042b6971d7
gnu: Add python-modin.
...
* gnu/packages/python-science.scm (python-modin): New variable.
2021-07-28 20:31:06 +02:00
251bfbcfaa
gnu: Add python-distributed.
...
* gnu/packages/python-science.scm (python-distributed): New variable.
2021-07-28 20:31:06 +02:00
41431282e2
gnu: Add python-zict.
...
* gnu/packages/python-xyz.scm (python-zict): New variable.
2021-07-28 20:31:06 +02:00
45ee09dc96
gnu: Add python-heapdict.
...
* gnu/packages/python-xyz.scm (python-heapdict): New variable.
2021-07-28 20:31:06 +02:00
532cfc5bd2
gnu: python-pyarrow: Fix parquet support.
...
Co-authored-by: Phil Beadling <phil@beadling.co.uk>.
* gnu/packages/databases.scm (python-pyarrow)[arguments]: Add phases
patch-cmake-variables, patch-parquet-library, and set-PYARROW_WITH_PARQUET.
[propagated-inputs]: Add "include" output of apache-arrow package.
2021-07-28 20:31:06 +02:00
3a150e9f12
gnu: python-pandas: Update to 1.3.0.
...
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0.
[arguments]: Adjust check phase.
2021-07-28 20:31:06 +02:00
242221e380
gnu: python-dask: Update to 2021.7.1.
...
* gnu/packages/python-xyz.scm (python-dask): Update to 2021.7.1.
[arguments]: Do not skip test_shuffle.
2021-07-28 20:31:05 +02:00
f01d4b197a
gnu: python-partd: Update to 1.2.0.
...
* gnu/packages/python-xyz.scm (python-partd): Update to 1.2.0.
2021-07-28 20:31:05 +02:00
Marius Bakke
Nicolas Goaziou
Arun Isaac
Morgan Smith
Ricardo Wurmus
Felix Gruber
Ludovic Courtès
John Kehayias
Kaelyn Takata
Tobias Geerinckx-Rice
Christopher Lemmer Webber
Brice Waegeneire
Efraim Flashner
Mathieu Othacehe
Ron Nazarov via Guix-patches via
Maxime Devos
Leo Famulari
Lars-Dominik Braun