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Author SHA1 Message Date
Nicolas Goaziou
e26d6a6de0
gnu: emacs-subed: Update to 1.0.28. 
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.28.
 2022-12-23 15:16:31 +01:00
Efraim Flashner
9923100a42
gnu: sgabios: Fix build on cross-build architectures. 
* gnu/packages/firmware.scm (sgabios)[arguments]: When cross-building
add a make-flag to use the correct objcopy.
 2022-12-23 13:56:11 +02:00
Roman Scherer
66188398c4
gnu: netcdf: Update to 4.9.0. 
* gnu/packages/maths.scm (netcdf): Update to 4.9.0.
  [source]: Use new URI.
  [inputs]: Add libxml2 and unzip.
  [arguments]: Update 'configure-flags'. Add 'fix-test-rcmerge' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-23 11:56:27 +01:00
Andrew Tropin
dd4eee5581
home: xdg: Add with-imported-modules to xdg activation script. 
Without it activation doesn't work when called in clean environment.

* gnu/home/services/xdg.scm (ensure-xdg-base-dirs-on-activation): Add
with-imported-modules to xdg activation script.
 2022-12-23 11:43:27 +04:00
Nicolas Goaziou
1b29fccff2
gnu: emacs-mood-line: Update to 2.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-mood-line): Update to 2.0.0.
 2022-12-22 23:39:30 +01:00
Nicolas Goaziou
c8495bfc79
gnu: emacs-marginalia: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 1.0.
 2022-12-22 23:38:13 +01:00
Morgan Willcock
75b0388a90
gnu: emacs-org-msg: Update to 4.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-msg): Update to 4.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-22 23:31:04 +01:00
Nicolas Goaziou
f4672d9795
gnu: emacs-god-mode: Run tests. 
* gnu/packages/emacs-xyz.scm (emacs-god-mode)[arguments]: Run tests.
[native-inputs]: Add EMACS-ECUKES.
 2022-12-22 23:31:04 +01:00
Hilton Chain
29e2d45b11
gnu: emacs-god-mode: Update to 2.18.0. 
* gnu/packages/emacs-xyz.scm (emacs-god-mode): Update to 2.18.0.
[source,home-page]: Changed URL.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-22 23:31:03 +01:00
Nicolas Goaziou
82ab75b6a2
gnu: emacs-dashboard: Improve package style. 
* gnu/packages/emacs-xyz.scm (emacs-dashboard)[arguments]: Use G-expressions.
<#:include>: Use %default-include.
<#:phases>: Remove trailing #T, and unnecessary call to CHMOD.
[description]: Properly capitalize it.
 2022-12-22 23:31:03 +01:00
florhizome
fc29138074
gnu: emacs-dashboard: Update to 1.7.0-0.a69cc10. 
* gnu/packages/emacs-xyz.scm (emacs-dashboard): Update to 1.7.0-0.a69cc10.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-22 23:30:31 +01:00
Efraim Flashner
6ce7904a85
gnu: ipxe-qemu: Fix building on 32-bit systems. 
* gnu/packages/bootloaders.scm (ipxe-qemu)[native-inputs]: When building
from a 32-bit system add a binutils variant capable of assembling 64-bit
instructions and an ld-wrapper using it.
 2022-12-22 22:09:58 +02:00
Leo Famulari
1be1961a1c
gnu: linux-libre 5.10: Update to 5.10.161. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.161.
(linux-libre-5.10-pristine-source): Update hash.
 2022-12-22 11:36:25 -05:00
Leo Famulari
dd575627b3
gnu: linux-libre 5.15: Update to 5.15.85. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.85.
(linux-libre-5.15-pristine-source): Update hash.
 2022-12-22 11:36:25 -05:00
Leo Famulari
9922da2829
gnu: linux-libre: Update to 6.0.15. 
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.15.
(linux-libre-6.0-pristine-source): Update hash.
 2022-12-22 11:36:25 -05:00
Michael Rohleder
d2cd3290ea
gnu: stockfish: Update to 15.1. 
* gnu/packages/games.scm (stockfish): Update to 15.1.
  [arguments]: Renamed phase remove-m-flag to remove-m-flag-and-net-target.
  Add removing of the net target in the Makefile, because it wants networking.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-22 17:15:48 +01:00
Guillaume Le Vaillant
dade92613b
gnu: Add dsd. 
* gnu/packages/radio.scm (dsd): New variable.
 2022-12-22 17:15:48 +01:00
Marius Bakke
c9392e6fc6
gnu: QEMU: Unbundle SGABIOS. 
* gnu/packages/virtualization.scm (qemu)[source]: Purge sgabios.
[arguments]: Replace bundled variant with the one from INPUTS.
[inputs]: Add SGABIOS.
 2022-12-22 16:50:47 +01:00
Marius Bakke
368e00cce0
gnu: Add sgabios. 
* gnu/packages/firmware.scm (sgabios): New variable.
 2022-12-22 16:50:47 +01:00
Marius Bakke
9279775d69
gnu: iPXE: Embed the actual package version. 
* gnu/packages/bootloaders.scm (ipxe)[arguments]: Add phase to set the proper
version.
 2022-12-22 16:50:47 +01:00
Marius Bakke
209aed9511
gnu: Install QEMU firmare files to 'share/qemu'. 
This paves the way for using a native search path in the future.

* gnu/packages/bootloaders.scm (ipxe-qemu)[arguments]: Install firmware files
to 'share/qemu' instead of 'share/firmware'.
* gnu/packages/firmware.scm (seabios-qemu)[arguments]: Likewise.
* gnu/packages/virtualization.scm (qemu)[arguments]: Adjust accordingly.
 2022-12-22 16:50:47 +01:00
Marius Bakke
ba7f6f0bf3
gnu: QEMU: Unbundle iPXE. 
* gnu/packages/virtualization.scm (qemu)[source](snippet): Purge iPXE.
[arguments]: Re-add firmware files from IPXE-QEMU.
[inputs]: Add IPXE-QEMU.
 2022-12-22 16:50:47 +01:00
Marius Bakke
a5dbe84a61
gnu: ipxe-qemu: Cross-compile on non x86_64. 
* gnu/packages/bootloaders.scm (ipxe-qemu)[native-inputs]: When not targeting
x86_64, add CROSS-GCC and CROSS-BINUTILS.
[arguments]: Set CROSS_COMPILE in that case.
 2022-12-22 16:50:47 +01:00
Marius Bakke
ffc0037458
gnu: SeaBIOS: Split QEMU variants out to separate package. 
* gnu/packages/firmware.scm (seabios)[arguments]: Move custom build and
install phases out to ...
(seabios-qemu): ... this new variable.
* gnu/packages/virtualization.scm (qemu)[inputs]: Change from SEABIOS to
SEABIOS-QEMU.
 2022-12-22 16:50:47 +01:00
Marius Bakke
aeabddcfc5
gnu: QEMU: Don't provide --firmwarepath for user-mode binaries. 
* gnu/packages/virtualization.scm (qemu)[arguments]: Remove --firmwarepath
from the user-mode emulation configure invocation.
 2022-12-22 16:50:47 +01:00
Efraim Flashner
c1d543203e
gnu: openvpn: Update to 2.5.8. 
* gnu/packages/vpn.scm (openvpn): Update to 2.5.8.
 2022-12-22 14:28:21 +02:00
Ricardo Wurmus
d8a9d55b57
gnu: Add r-bedtorch. 
* gnu/packages/bioinformatics.scm (r-bedtorch): New variable.
 2022-12-22 11:18:02 +01:00
Ricardo Wurmus
6d2f312b23
gnu: Add r-rhtslib12. 
* gnu/packages/bioinformatics.scm (r-rhtslib12): New variable.
 2022-12-22 11:17:52 +01:00
Ricardo Wurmus
2a4930a1e6
gnu: Add wiggletools. 
* gnu/packages/bioinformatics.scm (wiggletools): New variable.
 2022-12-22 10:29:20 +01:00
Efraim Flashner
7c2dab7dd4
gnu: xterm: Update to 377. 
* gnu/packages/xorg.scm (xterm): Update to 377.
 2022-12-22 11:00:56 +02:00
Vagrant Cascadian
0744540d09
gnu: guile-ssh: Update to 0.16.0. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.16.0.
 2022-12-21 22:15:15 -08:00
Andrew Tropin
30143cdad2
gnu: fheroes2: Update to 1.0.0. 
* gnu/packages/games.scm (fheroes2): Update to 1.0.0.
 2022-12-22 09:59:39 +04:00
Navid Afkhami
87c3fab854
gnu: Add python-episcanpy. 
* gnu/packages/bioinformatics.scm (python-episcanpy): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-12-22 00:17:43 +01:00
Navid Afkhami
d07543b886
gnu: Add python-bamnostic. 
* gnu/packages/bioinformatics.scm (python-bamnostic): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-12-22 00:14:05 +01:00
Ricardo Wurmus
9e495087d2
gnu: Add vembrane. 
* gnu/packages/bioinformatics.scm (vembrane): New variable.
 2022-12-21 23:12:41 +01:00
Ricardo Wurmus
1194cb1c40
gnu: python-plastid: Update to 0.6.0. 
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add build phases 'unpack-test-data and
'build-extensions.
[inputs]: Add openssl.
[native-inputs]: Add test data.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus
bc4eac5d79
gnu: python-pysam: Update to 0.20.0. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.20.0.
[build-system]: Use pyproject-build-system.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus
50948b8c3d
gnu: htslib: Update to 1.16. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.16.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus
e34639c262
gnu: pbbam: Use htslib 1.14. 
* gnu/packages/bioinformatics.scm (pbbam)[propagated-inputs]: Replace htslib
with htslib-1.14.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus
5ccc017389
gnu: Add htslib-1.14. 
* gnu/packages/bioinformatics.scm (htslib-1.14): New variable.
 2022-12-21 23:12:40 +01:00
pukkamustard
fe5836feaf
gnu: Add ocaml5.0-merlin. 
* gnu/packages/ocaml.scm (ocaml5.0-merlin): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:42 +01:00
pukkamustard
8ed74a1787
gnu: Add ocaml5.0-dot-merlin-reader. 
* gnu/packages/ocaml.scm (ocaml5.0-dot-merlin-reader): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:40 +01:00
pukkamustard
134480a381
gnu: Add ocaml5.0-merlin-lib. 
* gnu/packages/ocaml.scm (ocaml5.0-merlin-lib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:38 +01:00
pukkamustard
f127f0fbf3
gnu: Update ocaml-merlin-lib to 4.7-414. 
* gnu/packages/ocaml.scm (ocaml-merlin-lib): Update to 4.7-414.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:31 +01:00
pukkamustard
cb1fe1c690
gnu: Add ocaml5.0-eio-main. 
* gnu/packages/ocaml.scm (ocaml5.0-eio-main): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:28 +01:00
pukkamustard
417be516de
gnu: Add ocaml5.0-eio-linux. 
* gnu/packages/ocaml.scm (ocaml5.0-eio-linux): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:24 +01:00
pukkamustard
c986522877
gnu: Add ocaml-uring. 
* gnu/packages/ocaml.scm (ocaml-uring): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:22 +01:00
pukkamustard
2b335e87f7
gnu: Add ocaml5.0-eio-luv. 
* gnu/packages/ocaml.scm (ocaml5.0-eio-luv): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:19 +01:00
pukkamustard
14fae62df8
gnu: Add ocaml5.0-eio. 
* gnu/packages/ocaml.scm (ocaml5.0-eio): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:16 +01:00
pukkamustard
2cb15f8501
gnu: ocaml-mdx: Move inputs to propagated-inputs. 
* gnu/packages/ocaml.scm (ocaml-mdx): Move inputs to propagated-inputs.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2022-12-21 22:10:12 +01:00