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Author SHA1 Message Date
Maxim Cournoyer e7e73f750f
gnu: imp: Migrate to Python 3. 
* gnu/packages/bioinformatics.scm (imp)
[arguments]: Enable tests by removing the #:tests? argument.
Specify the arguments to pass to the ctest test running via the
 #:configure-flags argument.
[inputs]: Add cgal and opencv.  Remove python-2.  Move swig to...
[native-inputs]: ...here.  Add python-wrapper.
[propagated-inputs]: Replace python2-numpy, python2-scipy, python2-pandas,
python2-scikit-learn and python2-networkx by python-numpy, python-scipy,
python-pandas, python-scikit-learn and python-networkx, respectively.
 2020-11-24 02:20:31 -05:00
Maxim Cournoyer 5458648302
gnu: cmake: Update to 3.19.0. 
* gnu/packages/cmake.scm (cmake): Update to 3.19.0.
[source]: Modify inherited source to adjust the hash as well as the snippet so
that the "Utilities/cm3p" sub-directory is preserved.
[phases]{patch-bin-sh, check}: Temporarily overrides until the next rebuild
cycle.
 2020-11-24 02:20:31 -05:00
Tanguy Le Carrour ccfafebc7d
gnu: python-mamba: Update to 0.11.2. 
* gnu/packages/python-xyz.scm (python-mamba): Update to 0.11.2.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2020-11-24 12:10:12 +05:30
Tanguy Le Carrour 3f8113bbbd
gnu: python-isbnlib: Update to 3.10.4. 
* gnu/packages/python-xyz.scm (python-isbnlib): Update to 3.10.4.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2020-11-24 12:09:03 +05:30
Oleg Pykhalov 984124173b
doc: Fix a typo in WebSSH configuration documentation. 
* doc/guix.texi (Networking Services): Fix a typo in webssh-configuration.
 2020-11-24 07:43:43 +03:00
Vagrant Cascadian 2faef3cb6f
gnu: ghc-text-short: Fix spelling. 
* gnu/packages/haskell-xyz (ghc-text-short): Fix spelling of
  "similar".
 2020-11-23 17:19:08 -08:00
Vagrant Cascadian c3364c18fd
gnu: bsd-games: Fix spelling. 
* gnu/packages/games (bsd-games)[description]: Fix spelling of
  "chosen".
 2020-11-23 17:19:06 -08:00
Vagrant Cascadian ceadb470a5
gnu: emacs-frame-local: Fix typo. 
* gnu/packages/emacs-xyz (emacs-frame-local)[description]: Fix grammar
  of "This package".
 2020-11-23 17:18:41 -08:00
Marius Bakke 689d88451e
gnu: ungoogled-chromium: Update to 87.0.4280.66-0.1f7cdef. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 87.
(arch-patch, %arch-revision, %arch-patches): Remove.
(ungoogled-chromium-snippet): Remove %ARCH-PATCHES.
(%ungoogled-revision): Set to 1f7cdef6dfa8f612afde8f988131f210612333e0.
(%chromium-version): Set to 87.0.4280.66.
(ungoogled-chromium)[source]: Update hash.
[arguments]: Adjust #:configure-flags for changes in 87.  Enable Pipewire
support in WebRTC.
[native-inputs]: Add WAYLAND.
[inputs]: Add PIPEWIRE and WAYLAND.
(ungoogled-chromium/wayland): Implement as a wrapper over UNGOOGLED-CHROMIUM.
* gnu/packages/patches/ungoogled-chromium-system-nspr.patch: Adjust for 87.
 2020-11-23 23:37:34 +01:00
Ludovic Courtès 5859170209
Merge branch 'version-1.2.0' 2020-11-23 22:20:27 +01:00
Tobias Geerinckx-Rice 94147d672a
gnu: mujs: Omit static library. 
* gnu/packages/javascript.scm (mujs)[arguments]: Replace the default
'install phase which would install (only) the static library.
 2020-11-23 22:12:19 +01:00
Tobias Geerinckx-Rice 4a74499cd9
gnu: mujs: Cross-compile. 
* gnu/packages/javascript.scm (mujs)[arguments]: Use CC-FOR-TARGET.
 2020-11-23 22:12:19 +01:00
Tobias Geerinckx-Rice f289d922b2
gnu: mujs: Update to 1.0.9. 
* gnu/packages/javascript.scm (mujs): Update to 1.0.9.
 2020-11-23 22:12:19 +01:00
Tobias Geerinckx-Rice d3e6f41ad6
gnu: mujs: Fetch sources from git. 
* gnu/packages/javascript.scm (mujs)[source]: GIT-FETCH the sources
directly from the author.
[arguments]: Add VERSION to #:make-flags.
 2020-11-23 22:12:19 +01:00
Tobias Geerinckx-Rice 41c3f10b4c
gnu: gpodder: Update to 3.10.17. 
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.17.
 2020-11-23 22:12:19 +01:00
Tobias Geerinckx-Rice c569aae146
gnu: snd: Update to 20.9. 
* gnu/packages/audio.scm (snd): Update to 20.9.
 2020-11-23 22:12:19 +01:00
Tobias Geerinckx-Rice cf341c39f7
gnu: libraqm: Update to 0.7.1. 
* gnu/packages/fontutils.scm (libraqm): Update to 0.7.1.
 2020-11-23 22:12:19 +01:00
Tobias Geerinckx-Rice 8cc6cd3429
gnu: djview: Update to 4.12. 
* gnu/packages/djvu.scm (djview): Update to 4.12.
 2020-11-23 22:12:18 +01:00
Tobias Geerinckx-Rice 9314d82518
gnu: mtpaint: Update to 3.49.33. 
* gnu/packages/image.scm (mtpaint): Update to 3.49.33.
 2020-11-23 22:12:18 +01:00
David Thompson be4d9527b5
gnu: guile-chickadee: Use Guile 3.0. 
* gnu/packages/game-development.scm (guile-chickadee): Change Guile inputs to
  use 3.0 package variants.
 2020-11-23 15:52:42 -05:00
Niklas Eklund c758433302
gnu: Add emacs-undo-fu-session. 
* gnu/packages/emacs-xyz.scm (emacs-undo-fu-session): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2020-11-24 00:36:00 +05:30
Niklas Eklund b27b0e13b6
gnu: Add emacs-embark. 
* gnu/packages/emacs-xyz.scm (emacs-embark): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2020-11-24 00:13:47 +05:30
Tobias Geerinckx-Rice ba902a1598
gnu: eigen: Add upstream bugfix patch. 
This fixes the build of nanopolish, imp, and others.

Reported by apteryx in #guix.

* gnu/packages/algebra.scm (eigen)[source]: Add patch.
* gnu/packages/patches/eigen-remove-openmp-error-counting.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-11-23 19:22:31 +01:00
Tobias Geerinckx-Rice 2d3c932073
gnu: parallel: Update to 20201122. 
* gnu/packages/parallel.scm (parallel): Update to 20201122.
 2020-11-23 19:22:30 +01:00
Niklas Eklund ddfaae3136
gnu: Add emacs-orderless. 
* gnu/packages/emacs-xyz.scm (emacs-orderless): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2020-11-23 23:49:40 +05:30
David Thompson 4411029777
gnu: guile-chickadee: Update to 0.6.0. 2020-11-23 12:57:15 -05:00
David Thompson b4b15389b7
gnu: Deprecate guile3.0-chickadee. 2020-11-23 12:56:51 -05:00
Efraim Flashner 964bc9e5fe
gnu: Add cwltool. 
* gnu/packages/bioinformatics.scm (cwltool): New variable.
 2020-11-23 15:43:38 +02:00
Efraim Flashner a78159547f
gnu: Add python-shellescape. 
* gnu/packages/python-xyz.scm (python-shellescape): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner 5c3d81802d
gnu: Add python-arcp. 
* gnu/packages/python-xyz.scm (python-arcp): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner 7face25953
gnu: Add python-schema-salad. 
* gnu/packages/bioinformatics.scm (python-schema-salad): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner 01b6864125
gnu: Add python-cachecontrol-0.11. 
* gnu/packages/python-web.scm (python-cachecontrol-0.11): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner 5a5f16ec42
gnu: Add python-prov. 
* gnu/packages/python-xyz.scm (python-prov): New variable.
 2020-11-23 15:43:37 +02:00
Efraim Flashner f00165a736
gnu: Add python-bagit. 
* gnu/packages/python-xyz.scm (python-bagit): New variable.
 2020-11-23 15:43:36 +02:00
Efraim Flashner f8be147411
gnu: python-pydot: Update home-page URI. 
* gnu/packages/graphviz.scm (python-pydot)[home-page]: Update to new
home-page URI.
 2020-11-23 15:43:36 +02:00
Efraim Flashner b1aac582ca
gnu: python-pydot: Run tests. 
* gnu/packges/graphviz.scm (python-pydot)[source]: Add patch.
[arguments]: Override check phase.
[native-inputs]: Add graphviz.
* gnu/packages/patches/python-pydot-regression-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2020-11-23 15:43:36 +02:00
Efraim Flashner 79f3e26184
gnu: python-pydot: Update to 1.4.1. 
* gnu/packages/graphviz.scm (python-pydot): Update to 1.4.1.
 2020-11-23 15:43:32 +02:00
Efraim Flashner 77b7d990ec
gnu: grub: Fix cross-compiling for other architectures. 
Reported by cbaines and xelxebar on IRC.

* gnu/packages/bootloaders.scm (grub)[arguments]: In custom
'set-freetype-variables phase only use the native-inputs version of
freetype.
 2020-11-23 15:43:32 +02:00
Mathieu Othacehe d9e57db724
store: Fix ensure-path docstring. 
Suggested by Ludovic Courtès.

* guix/store.scm (ensure-path): Fix the docstring.
 2020-11-23 14:10:34 +01:00
Guillaume Le Vaillant f14c6af5dc
gnu: Add djvusmooth. 
* gnu/packages/djvu.scm (djvusmooth): New variable.
 2020-11-23 13:28:19 +01:00
Guillaume Le Vaillant 72fbbca80d
gnu: Add python-djvulibre. 
* gnu/packages/python-xyz.scm (python-djvulibre): New variable.
 2020-11-23 13:28:18 +01:00
Pierre Neidhardt add4749917
etc: snippets: Prefill Common Lisp package names. 
* etc/snippets/text-mode/guix-commit-message-add-cl-package: New file.
 2020-11-23 11:14:22 +01:00
Pierre Neidhardt 8307b8f184
etc: snippets: Fix package name extraction. 
* etc/snippets/text-mode/guix-commit-message-add-package: Properly extract
name when the diff contains a very short `define-public ...` above the actual
new package.  This can happen when the above package is a small inherited
definition or cl/ecl package.
 2020-11-23 11:13:58 +01:00
Tobias Geerinckx-Rice f942c09b66
gnu: lsof: Cross-compile. 
* gnu/packages/lsof.scm (lsof)[arguments]: Use CC-FOR-TARGET.
 2020-11-23 05:44:11 +01:00
Tobias Geerinckx-Rice 2bf502138c
gnu: lsof: Make test failures fatal. 
* gnu/packages/lsof.scm (lsof)[source]: Add patch to make test suite
failures stop the build.
* gnu/packages/patches/lsof-fatal-test-failures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice 70303d073a
gnu: lsof: Respect #:tests?. 
* gnu/packages/lsof.scm (lsof)[arguments]: The 'check phase takes and
respects a TESTS? keyword.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice 518b21e058
gnu: lsof: Update to 4.94.0. 
* gnu/packages/lsof.scm (lsof): Update to 4.94.0.
[source]: Switch to new git upstream.
[native-inputs]: Add groff.
[arguments]: Remove custom 'unpack phase.  Add a 'build-man-page phase.
Remove the upstreamed glibc@2.28 test fix.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice 83371ccddd
gnu: hdparm: Update to 9.60. 
* gnu/packages/linux.scm (hdparm): Update to 9.60.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice 096a6938c2
gnu: ipset: Update to 7.9. 
* gnu/packages/linux.scm (ipset): Update to 7.9.
 2020-11-23 05:44:10 +01:00
Tobias Geerinckx-Rice 079bdcddd4
gnu: ipset: Use HTTPS home page. 
* gnu/packages/linux.scm (ipset)[source, home-page]: Use HTTPS.
 2020-11-23 05:44:10 +01:00