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88517 Commits (e8fd7017c8e4be3771cad85f2ebb40431cae0cf1)

Author SHA1 Message Date
Attila Lendvai e11517052b
services: configuration: Support (field1 maybe-number "") format.
As opposed to explicitly using 'disabled as value, or using the
(field1 (maybe-number) "") format.

It's mostly the work of Maxime Devos shared under #54674, with some
modifications by Attila Lendvai.

* gnu/services/configuration.scm (normalize-field-type+def): New function.
(define-configuration-helper) (define-configuration): Support new field
format.
* tests/services/configuration.scm (config-with-maybe-number->string): New
function.
("maybe value serialization of the instance"): New test.
("maybe value serialization of the instance, unspecified"): New test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:21 +02:00
Ludovic Courtès 7046e77721
system: <operating-system> compiler truly honors the 'system' argument.
Fixes <https://issues.guix.gnu.org/55951>.

* gnu/system.scm (operating-system-compiler): Parameterize
'%current-system' and '%current-target-system' before calling
'operating-system-derivation'.
* tests/system.scm ("lower-object, %current-system sensitivity"): New
test.
2022-06-15 00:25:20 +02:00
Marius Bakke 13c46cc29d
gnu: PostgreSQL: Promote version 14 to the default.
* gnu/packages/databases.scm (postgresql): Alias to POSTGRESQL-14.
* gnu/packages/qt.scm (qtbase-5)[inputs]: Stay on POSTGRESQL-13.
2022-06-14 23:33:54 +02:00
Marius Bakke bd16e7c32d
gnu: python-asyncpg: Update to 0.25.0.
* gnu/packages/databases.scm (python-asyncpg): Update to 0.25.0.
[native-inputs]: Remove PYTHON-FLAKE8, PYTHON-PYCODESTYLE, PYTHON-SPHINX,
PYTHON-SPHINX-RTD-THEME, and PYTHON-SPHINXCONTRIB-ASYNCIO.
2022-06-14 23:33:54 +02:00
Marius Bakke d51a097460
gnu: python-tortoise-orm: Update to 0.19.1.
* gnu/packages/databases.scm (python-tortoise-orm): Update to 0.19.1.
2022-06-14 23:33:53 +02:00
Marius Bakke 3f033b6d9e
gnu: python-pypika-tortoise: Update to 0.1.5.
* gnu/packages/databases.scm (python-pypika-tortoise): Update to 0.1.5.
2022-06-14 23:33:53 +02:00
Marius Bakke 9f1713f219
gnu: gplates: Update to 2.3.01-beta.3.
* gnu/packages/geo.scm (gplates): Update to 2.3.01-beta.3.
[source](uri): Adjust for beta releases.
[source](file-name): Adjust for zipball.
[native-inputs]: Add UNZIP.
[inputs]: Simplify.
2022-06-14 23:33:53 +02:00
Marius Bakke ec4515389a
gnu: perl-dbd-pg: Update to 3.15.1.
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.15.1.
2022-06-14 23:33:53 +02:00
Marius Bakke 334c849ba1
gnu: python-acme, certbot: Update to 1.28.0.
* gnu/packages/tls.scm (python-acme): Update to 1.28.0.
[arguments]: Override check phase.
(certbot)[source]: Update hash.
2022-06-14 23:33:53 +02:00
Marius Bakke 73e0063888
gnu: python-josepy: Update to 1.13.0.
* gnu/packages/python-crypto.scm (python-josepy): Update to 1.13.0.
[propagated-inputs]: Remove PYTHON-SIX.
2022-06-14 23:33:53 +02:00
Marius Bakke d73b88d826
gnu: TimescaleDB: Update to 2.7.0.
* gnu/packages/databases.scm (timescaledb): Update to 2.7.0.
[source](snippet): Remove more files.
[source](patches): New field.
* gnu/packages/patches/timescaledb-flaky-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-06-14 23:33:52 +02:00
Marius Bakke b98a61a8f8
gnu: ruby-pg: Update to 1.3.5.
* gnu/packages/ruby.scm (ruby-pg): Update to 1.3.5.
[home-page]: Change to current.
[source]: Switch to GIT-FETCH.
[arguments]: Add #:phases.
2022-06-14 23:33:52 +02:00
Marius Bakke 4601dccb36
gnu: PostgreSQL@13: Update replacement to 13.7 [fixes CVE-2022-1552].
* gnu/packages/databases.scm (postgresql-13/replacement): Update to 13.7.
2022-06-14 23:33:52 +02:00
Marius Bakke 3787f56734
gnu: PostgreSQL@10: Update to 10.21 [fixes CVE-2022-1552].
* gnu/packages/databases.scm (postgresql-10): Update to 10.21.
2022-06-14 23:33:52 +02:00
Marius Bakke a18f937b56
gnu: PostgreSQL@11: Update to 11.16 [fixes CVE-2022-1552].
* gnu/packages/databases.scm (postgresql-11): Update to 11.16.
2022-06-14 23:33:52 +02:00
Marius Bakke f4f31bb99c
gnu: PostgreSQL@14: Update to 14.3 [fixes CVE-2022-1552].
* gnu/packages/databases.scm (postgresql-14): Update to 14.3.
2022-06-14 23:33:51 +02:00
Marius Bakke e03b450c36
gnu: PostgreSQL: Permit loading plugins from symlink unions again.
...this fixes a regression since 49b350fafc where the patch to disable
symlink resolving went missing from versions < 14.

* gnu/packages/databases.scm (postgresql-13/replacement): New variable.
(postgresql-13)[replacement]: New field.
(postgresql-11)[source](patches): Add 'postgresql-disable-resolve_symlinks.patch'.
2022-06-14 23:33:51 +02:00
Greg Hogan 8e97491277
gnu: dos2unix: Update to 7.4.3.
* gnu/packages/textutils.scm (dos2unix): Update to 7.4.3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-06-12 02:00:00 +02:00
Greg Hogan 142d136abd
gnu: htop: Update to 3.2.1.
* gnu/packages/admin.scm (htop): Update to 3.2.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-06-12 02:00:00 +02:00
Greg Hogan ad05cb6a3c
gnu: ccache: Update to 4.6.1.
* gnu/packages/ccache.scm (ccache): Update to 4.6.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-06-12 02:00:00 +02:00
Maxim Cournoyer a860a5fa95
services: dbus: Add a VERBOSE? configuration option.
* gnu/services/dbus.scm (<dbus-configuration>)[verbose?]: New field.
(dbus-shepherd-service): Use it.
(dbus-service)[verbose?]: Add argument and update doc.
* doc/guix.texi (Desktop Services): Document it.
2022-06-14 14:23:21 -04:00
Maxim Cournoyer 3aaf52a129
gnu: Add dbus-verbose.
* gnu/packages/glib.scm (dbus-verbose): New variable.
2022-06-14 14:23:21 -04:00
Liliana Marie Prikler 330d2778a9
gnu: komikku: Update to 0.39.0.
* gnu/packages/gnome.scm (komikku): Update to 0.39.0.
2022-06-14 19:01:33 +02:00
Liliana Marie Prikler 391544a596
gnu: webkitgtk: Update to 2.36.3.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.36.3.
2022-06-14 19:01:29 +02:00
Maxim Cournoyer 3dd32e76b0
gnu: h-client: Fetch source from Savannah again.
* gnu/packages/hardware.scm (h-client)[source]: Update URL and associated
comment.
2022-06-14 11:56:03 -04:00
Guillaume Le Vaillant 99c43cf344
gnu: cl-fof: Update to 0.2.0-1.522879e.
* gnu/packages/lisp-xyz.scm (sbcl-fof): Update to 0.2.0-1.522879e.
  [inputs]: Sort inputs.
  [arguments]: Remove 'fix-build' phase.
2022-06-14 16:18:07 +02:00
Guillaume Le Vaillant d1f3bba66c
gnu: cl-dexador: Remove input labels.
* gnu/packages/lisp-xyz.scm (sbcl-dexador)[inputs, native-inputs]: Remove
  labels and sort inputs.
2022-06-14 15:54:09 +02:00
André A. Gomes 893fc788fb
gnu: cl-dexador: Update to 0.9.15-1.74a233e.
* gnu/packages/lisp-xyz.scm (sbcl-dexador): Update to 0.9.15-1.74a233e.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-14 15:53:20 +02:00
Guillaume Le Vaillant 0fd660a2b2
gnu: cl-fof: Fix build with recent cl-serapeum.
* gnu/packages/lisp-xyz.scm (sbcl-fof)[inputs]: Remove labels and add
  sbcl-named-readtables.
  [arguments]: Add 'fix-build' phase.
2022-06-14 15:38:21 +02:00
Paul A. Patience 50b6377bc4
gnu: cl-serapeum: Update to 0.0.0-7.d2150c6.
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 0.0.0-7.d2150c6.
  [inputs]: Remove sbcl-named-readtables and sbcl-fare-quasiquote.
  Add sbcl-introspect-environment and sbcl-trivial-cltl2.
  [native-inputs]: Add sbcl-atomics.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-14 15:20:47 +02:00
Paul A. Patience f11b6ac9ac
gnu: cl-serapeum: Use G-expressions.
* gnu/packages/lisp-xyz.scm (sbcl-serapeum)[arguments]: Use G-expressions and
  simplify the 'disable-failing-tests' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-14 15:15:42 +02:00
Paul A. Patience 240ac3b75c
gnu: cl-serapeum: Remove input labels.
* gnu/packages/lisp-xyz.scm (sbcl-serapeum)[inputs, native-inputs]: Remove
  labels.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-14 15:14:24 +02:00
Arun Isaac 6f75565b4e
gnu: python-httpx: Update to 0.23.0.
* gnu/packages/python-web.scm (python-httpx): Update to 0.23.0.
2022-06-14 18:06:24 +05:30
Arun Isaac 2ac81f482a
gnu: python-httpcore: Update to 0.15.0.
* gnu/packages/python-web.scm (python-httpcore): Update to 0.15.0.
[arguments]: Override asyncio_mode when invoking pytest in check phase.
2022-06-14 18:06:20 +05:30
Tobias Geerinckx-Rice 2682b12ca4
gnu: dovecot: Update to 2.3.19.1.
* gnu/packages/mail.scm (dovecot): Update to 2.3.19.1.
2022-06-12 02:00:09 +02:00
Tobias Geerinckx-Rice e1b647fdf6
gnu: sudo: Update to 1.9.11p2.
* gnu/packages/admin.scm (sudo): Update to 1.9.11p2.
2022-06-12 02:00:00 +02:00
Tobias Geerinckx-Rice 88b098d9ba
gnu: python-parted: Rename to python-pyparted.
* gnu/packages/disk.scm (python-pyparted): New variable renamed from…
(python-parted): …this, to better follow the package naming guidelines.
Redefine it using DEPRECATED-PACKAGE.
2022-06-12 02:00:00 +02:00
Tobias Geerinckx-Rice 67ff676792
gnu: python-parted: Update to 3.12.0.
* gnu/packages/disk.scm (python-parted): Update to 3.12.0.
[arguments]: Run the default 'check phase at the default time.
2022-06-12 02:00:00 +02:00
Vagrant Cascadian 824f2afcf0
gnu: autogen: Build reproducibly.
* gnu/packages/autogen.scm (autogen)[arguments]: Add
  'use-numeric-ids-in-tarball phase.
2022-06-13 20:56:47 -07:00
Vagrant Cascadian 3691e37eb1
gnu: autogen: Build with guile 3.0.
* gnu/packages/autogen.scm (autogen)[arguments]: Add 'support-guile-3.0 phase.
  [inputs]: Remove guile-2.2 and add guile-3.0.
2022-06-13 20:56:30 -07:00
Artyom V. Poptsov 4ff9f1689d
gnu: java-commons-lang3: Update to 3.12.0
* gnu/packages/java.scm (java-commons-lang3): Update to 3.12.0.
* gnu/packages/patches/java-commons-lang-fix-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-06-13 22:49:13 +02:00
Andreas Enge f2ed82eb53
gnu: sollya: Update to 8.0.
* gnu/packages/algebra.scm (sollya): Update to 8.0.
2022-06-13 17:50:28 +02:00
Andreas Enge 89fefe2fd4
gnu: python-fpylll: Update to 0.5.7.
* gnu/packages/algebra.scm (python-fpylll): Update to 0.5.7.
  [source]: Revert from git to pypi.
2022-06-13 17:40:30 +02:00
Andreas Enge 5dec5f65ec
gnu: fplll: Update to 5.4.2.
* gnu/packages/algebra.scm (fplll): Update to 5.4.2.
[source]: Remove patch; for unknown reasons the package now compiles
without it.
* gnu/packages/patches/fplll-std-fenv.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister patch.
2022-06-13 17:16:54 +02:00
Ricardo Wurmus 35124d0087
gnu: r-quantpsyc: Update to 1.6.
* gnu/packages/statistics.scm (r-quantpsyc): Update to 1.6.
[propagated-inputs]: Add r-dplyr and r-purrr.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 789c7ab505
gnu: r-mnormt: Update to 2.1.0.
* gnu/packages/statistics.scm (r-mnormt): Update to 2.1.0.
[propagated-inputs]: Remove r-tmvnsim.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 3d7adc9b21
gnu: r-flexmix: Update to 2.3-18.
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-18.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 5fe57da316
gnu: r-r-oo: Update to 1.25.0.
* gnu/packages/statistics.scm (r-r-oo): Update to 1.25.0.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus ed945c7732
gnu: r-e1071: Update to 1.7-11.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-11.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 03aba54185
gnu: r-segmented: Update to 1.6-0.
* gnu/packages/statistics.scm (r-segmented): Update to 1.6-0.
[propagated-inputs]: Add r-nlme.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 944b4224e8
gnu: r-xml: Update to 3.99-0.10.
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.10.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 912792320a
gnu: r-rcurl: Update to 1.98-1.7.
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.7.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus ebcb0aa321
gnu: r-dbplyr: Update to 2.2.0.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.0.
[propagated-inputs]: Remove r-ellipsis; add r-cli and r-pillar.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus e1297b31c1
gnu: r-sendmailr: Update to 1.2-1.1.
* gnu/packages/statistics.scm (r-sendmailr): Update to 1.2-1.1.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus d7d62bcd61
gnu: r-zoom: Update to 2.0.6.
* gnu/packages/cran.scm (r-zoom): Update to 2.0.6.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus 23c6a87e5d
gnu: r-pkgdown: Update to 2.0.4.
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.4.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus b7b5e7d4f2
gnu: r-infer: Update to 1.0.2.
* gnu/packages/cran.scm (r-infer): Update to 1.0.2.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus fa3f80e44f
gnu: r-yardstick: Update to 1.0.0.
* gnu/packages/cran.scm (r-yardstick): Update to 1.0.0.
[propagated-inputs]: Remove r-proc; add r-hardhat.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus 839ec236e4
gnu: r-hardhat: Update to 1.1.0.
* gnu/packages/cran.scm (r-hardhat): Update to 1.1.0.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus 2e0e58863a
gnu: r-posterior: Update to 1.2.2.
* gnu/packages/cran.scm (r-posterior): Update to 1.2.2.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus 694eabcc17
gnu: r-rsconnect: Update to 0.8.26.
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.26.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus bc0b78bf32
gnu: r-mi: Update to 1.1.
* gnu/packages/cran.scm (r-mi): Update to 1.1.
[native-inputs]: Add r-knitr.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 4cc33ce2b2
gnu: r-gghighlight: Update to 0.3.3.
* gnu/packages/cran.scm (r-gghighlight): Update to 0.3.3.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus ea5377a641
gnu: r-torch: Update to 0.8.0.
* gnu/packages/cran.scm (r-torch): Update to 0.8.0.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus e0a7f404eb
gnu: r-univoutl: Update to 0.4.
* gnu/packages/cran.scm (r-univoutl): Update to 0.4.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 17f70b7363
gnu: r-randtoolbox: Update to 2.0.1.
* gnu/packages/cran.scm (r-randtoolbox): Update to 2.0.1.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 2327b15d31
gnu: r-terra: Update to 1.5-34.
* gnu/packages/cran.scm (r-terra): Update to 1.5-34.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus f85842a8e2
gnu: r-aplot: Update to 0.1.6.
* gnu/packages/cran.scm (r-aplot): Update to 0.1.6.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 58ec67948c
gnu: r-kernlab: Update to 0.9-31.
* gnu/packages/cran.scm (r-kernlab): Update to 0.9-31.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus bee70949b9
gnu: r-haplo-stats: Update to 1.8.9.
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.9.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 1821a127e7
gnu: r-adegenet: Update to 2.1.7.
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.7.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 3e38a5167d
gnu: r-classint: Update to 0.4-7.
* gnu/packages/cran.scm (r-classint): Update to 0.4-7.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 68c1510295
gnu: r-apcluster: Update to 1.4.10.
* gnu/packages/cran.scm (r-apcluster): Update to 1.4.10.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 0f94dd778c
gnu: r-parallelly: Update to 1.32.0.
* gnu/packages/cran.scm (r-parallelly): Update to 1.32.0.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 313c4234a0
gnu: r-rmpfr: Update to 0.8-9.
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-9.
2022-06-13 15:24:27 +02:00
Ricardo Wurmus cac7de2fc5
gnu: r-sodium: Update to 1.2.1.
* gnu/packages/cran.scm (r-sodium): Update to 1.2.1.
2022-06-13 15:24:27 +02:00
Ricardo Wurmus b3dca70aa1
gnu: r-admisc: Update to 0.28.
* gnu/packages/cran.scm (r-admisc): Update to 0.28.
2022-06-13 15:24:27 +02:00
Ricardo Wurmus 58e256383f
gnu: r-rgl: Update to 0.109.2.
* gnu/packages/cran.scm (r-rgl): Update to 0.109.2.
[propagated-inputs]: Add r-base64enc and r-mime.
[native-inputs]: Add r-rmarkdown.
2022-06-13 15:24:14 +02:00
Ricardo Wurmus 739a195622
gnu: r-flextable: Update to 0.7.2.
* gnu/packages/cran.scm (r-flextable): Update to 0.7.2.
2022-06-13 14:21:51 +02:00
Ricardo Wurmus 9d0ce9aaf4
gnu: r-officer: Update to 0.4.3.
* gnu/packages/cran.scm (r-officer): Update to 0.4.3.
2022-06-13 14:21:51 +02:00
Ricardo Wurmus 7edac5cd0a
gnu: r-rdpack: Update to 2.3.1.
* gnu/packages/cran.scm (r-rdpack): Update to 2.3.1.
2022-06-13 14:21:51 +02:00
Ricardo Wurmus ba881471ac
gnu: r-ellipse: Update to 0.4.3.
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.3.
2022-06-13 14:21:50 +02:00
Ricardo Wurmus c3bbdd4a5b
gnu: r-sna: Update to 2.7.
* gnu/packages/cran.scm (r-sna): Update to 2.7.
2022-06-13 14:21:50 +02:00
Ricardo Wurmus d72d39eaaf
gnu: r-processx: Update to 3.6.0.
* gnu/packages/cran.scm (r-processx): Update to 3.6.0.
2022-06-13 14:21:49 +02:00
Ricardo Wurmus 18fd4e7d70
gnu: r-vcd: Update to 1.4-10.
* gnu/packages/cran.scm (r-vcd): Update to 1.4-10.
2022-06-13 14:21:49 +02:00
Ricardo Wurmus 9ccb6b4bee
gnu: r-ipred: Update to 0.9-13.
* gnu/packages/cran.scm (r-ipred): Update to 0.9-13.
2022-06-13 14:21:49 +02:00
Ricardo Wurmus 8221425e3e
gnu: r-progressr: Update to 0.10.1.
* gnu/packages/cran.scm (r-progressr): Update to 0.10.1.
2022-06-13 14:21:48 +02:00
Ricardo Wurmus 38dde27cb3
gnu: r-bdsmatrix: Update to 1.3-6.
* gnu/packages/cran.scm (r-bdsmatrix): Update to 1.3-6.
2022-06-13 14:21:48 +02:00
Ricardo Wurmus c992406b5a
gnu: r-sp: Update to 1.5-0.
* gnu/packages/cran.scm (r-sp): Update to 1.5-0.
2022-06-13 14:21:48 +02:00
Ricardo Wurmus 6ffd58142c
gnu: r-proxy: Update to 0.4-27.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-27.
2022-06-13 14:21:47 +02:00
Ricardo Wurmus 65464d9027
gnu: r-restrserve: Update to 1.2.0.
* gnu/packages/cran.scm (r-restrserve): Update to 1.2.0.
2022-06-13 14:21:47 +02:00
Ricardo Wurmus ae4c1cb0b3
gnu: r-benchmarkme: Update to 1.0.8.
* gnu/packages/cran.scm (r-benchmarkme): Update to 1.0.8.
[propagated-inputs]: Add r-stringr.
2022-06-13 14:21:46 +02:00
Ricardo Wurmus 1917b1f63e
gnu: r-afpt: Update to 1.1.0.2.
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.2.
2022-06-13 14:21:46 +02:00
Ricardo Wurmus fce6aeba7e
gnu: r-nbpseq: Update to 0.3.1.
* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
2022-06-13 14:21:46 +02:00
Ricardo Wurmus 37378829bc
gnu: r-restfulr: Update to 0.0.14.
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
2022-06-13 14:21:42 +02:00
Ricardo Wurmus 7846896156
gnu: Add js-mathjax-for-r-mathjaxr.
* gnu/packages/patches/mathjax-3.1.2-no-a11y.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/javascript.scm (js-mathjax-for-r-mathjaxr): New variable.
2022-06-13 12:43:31 +02:00
Lars-Dominik Braun 97ebfc8f5c
gnu: python-asyncssh: Update to 2.11.0.
* gnu/packages/ssh.scm (python-asyncssh)[version]: Update to 2.11.0.
[propagated-inputs]: Add python-typing-extensions.
[native-inputs]: Add python-fido2, python-aiofiles, netcat and
python-pytest.
[arguments]: Disable netcat autodetection. Replace 'check with call
to pytest.
2022-06-13 12:30:17 +02:00
Artyom V. Poptsov b40761ca9d
gnu: Add python-langcodes.
* gnu/packages/python-xyz.scm (python-langcodes): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-13 12:27:35 +02:00
terramorpha fcad622648
services: guix: Generalize extensions.
* gnu/services/base.scm (<guix-extension>): New record type.
(guix-extension-merge): New procedure.
(guix-service-type): Honor extensions.
* doc/guix.texi (Base Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-13 12:27:35 +02:00
Ludovic Courtès 8918ce6d16
gnu: racket: Avoid use of (ice-9 exceptions).
Fixes <https://issues.guix.gnu.org/54546>.
Reported by Giovanni Biscuolo <g@xelera.eu>
and Michael Chirillo <michael.a.chirillo@gmail.com>.

* gnu/packages/racket.scm (racket): Rewrite in terms of SRFI-34/35
instead of (ice-9 exceptions).
2022-06-13 12:27:34 +02:00
Guillaume Le Vaillant c318f4fcb1
gnu: txr: Update to 277.
* gnu/packages/lisp.scm (txr): Update to 277.
  [inputs]: Add zlib.
2022-06-13 11:06:57 +02:00
Ludovic Courtès 6aa457fed1
Merge branch 'staging' 2022-06-13 08:57:51 +02:00
Marius Bakke d4482e9a9e
gnu: ungoogled-chromium: Update to 102.0.5005.115-1.
* gnu/packages/chromium.scm (%chromium-version): Set to 102.0.5005.115.
(%ungoogled-revision): Set to 1.
(%ungoogled-origin, ungoogled-chromium): Update hash.
2022-06-13 00:44:12 +02:00
Marius Bakke bcd9866eb4
gnu: LLVM, Clang, LLD: Update to 14.0.5.
* gnu/packages/llvm.scm (llvm-14, clang-14, lld-14): Update to 14.0.5.
(%llvm-monorepo-hashes, %llvm-patches): Adjust accordingly.
2022-06-13 00:44:12 +02:00
Marius Bakke d3d00b1b4f
gnu: uBlock Origin: Update to 1.43.0.
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.43.0.
2022-06-13 00:44:12 +02:00
Ricardo Wurmus 0006a9a83a
gnu: Add r-deconvr.
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
2022-06-12 22:51:23 +02:00
Ricardo Wurmus eec1724ea6
gnu: Add r-rsq.
* gnu/packages/cran.scm (r-rsq): New variable.
2022-06-12 22:51:23 +02:00
Ludovic Courtès 622545de6c
Merge branch 'master' into staging 2022-06-12 22:49:47 +02:00
jgart 9c036f2dfb
gnu: Add emacs-corfu-doc-terminal.
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-12 13:19:24 +02:00
jgart a473d74ff1
gnu: Add emacs-corfu-terminal.
* gnu/packages/emacs-xyz.scm (emacs-corfu-terminal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-12 13:19:23 +02:00
Efraim Flashner e22b55f0b9
gnu: llvm-14: Fix configure-flags for cross-compiling.
* gnu/packages/llvm.scm (llvm-14)[arguments]: Fix syntax error in
configure-flags when cross-compiling llvm.
2022-06-12 13:50:47 +03:00
Efraim Flashner 3cbef19a90
gnu: zig: Limit to 64bit systems.
* gnu/packages/zig.scm (zig)[supported-systems]: New field.
2022-06-12 13:50:47 +03:00
Ricardo Wurmus 541823b318
gnu: r-hdf5array: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus a12ec47cbd
gnu: r-universalmotif: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus a76b657d93
gnu: r-rsubread: Update to 2.10.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus 41435e0e1c
gnu: r-clusterprofiler: Update to 4.4.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus 640b45d73c
gnu: r-monocle: Update to 2.24.1.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus 8ed8c8b8da
gnu: r-chippeakanno: Update to 3.30.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus 46aab4d33d
gnu: r-zellkonverter: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus 7a344aa9e2
gnu: r-keggrest: Update to 1.36.2.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus 1ecac84c73
gnu: r-genomicfeatures: Update to 1.48.3.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus 15e26f97d9
gnu: r-biocparallel: Update to 1.30.3.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3.
[propagated-inputs]: Add r-codetools.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus f5899fe58b
gnu: r-deepsnv: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
2022-06-12 11:16:23 +02:00
Julien Lepiller 965d54e344
gnu: java-plexus-component-metadata: Fix package.
* gnu/packages/java.scm (java-plexus-component-metadata): Apply fix for
  newer jdom.
2022-06-12 09:07:17 +02:00
Ludovic Courtès 091eb323ba
Merge branch 'master' into staging 2022-06-08 14:53:16 +02:00
jgart via Guix-patches via 0c5299200f
gnu: Add emacs-pyimport.
* gnu/packages/emacs-xyz.scm (emacs-pyimport): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:14:41 +02:00
Stefan Reichör 7fbf02b854
gnu: Add emacs-toodoo.
* gnu/packages/emacs-xyz.scm (emacs-toodoo): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:09:04 +02:00
Thomas Albers 1ba8c74de3
gnu: Add emacs-opencl-mode.
* gnu/packages/emacs-xyz.scm (emacs-opencl-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:02:53 +02:00
Ludovic Courtès 05fef7bfc6
gnu: timescaledb: Adjust test preparation to PostgreSQL 13.6.
The previous method of making a union with symlinks would work with 13.4
but not with 13.6, which has an extra 'canonicalize_path' call in
'find_my_exec'.

* gnu/packages/databases.scm (timescaledb)[arguments]: In
'prepare-tests', pass #:symlink argument to 'union-build'.
2022-06-07 23:58:16 +02:00
Ludovic Courtès b422687cbd
gnu: postgresql@10: Fix manual compilation.
This is a followup to f0227a18c2.

* gnu/packages/databases.scm (postgresql-10)[native-inputs]: New field.
2022-06-05 17:00:18 +02:00
Ludovic Courtès 5035be651a
gnu: docbook-sgml: Add 4.2.
* gnu/packages/docbook.scm (docbook-sgml-4.2, docbook-sgml-4.1): New
variables.
(docbook-sgml): Make an alias to 'docbook-sgml-4.1'.
2022-06-05 17:00:18 +02:00
Ludovic Courtès 5b6b4ade7c
gnu: go: Make 'make-go-std' memoizing.
* gnu/packages/golang.scm (make-go-std): Use 'mlambdaq'.
2022-06-05 17:00:18 +02:00
Ludovic Courtès fb21085d25
gnu: go-std: Make public.
* gnu/packages/golang.scm (go-std-1.14, go-std-1.16, go-std-1.17): New
variables.
2022-06-05 17:00:17 +02:00
Tobias Geerinckx-Rice 75eae3fd78
gnu: emacs-rainbow-mode: Update to 1.0.6.
* gnu/packages/emacs-xyz.scm (emacs-rainbow-mode): Update to 1.0.6.
2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 1dc22f19e8
gnu: emacs-undo-tree: Update to 0.8.2.
* gnu/packages/emacs-xyz.scm (emacs-undo-tree): Update to 0.8.2.
2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 4fc248ada2
gnu: emacs-ghub: Update to 3.5.6.
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.5.6.
2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 9105c60f0d
gnu: putty: Update to 0.77.
* gnu/packages/networking.scm (putty): Update to 0.77.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old 'chdir phase.  Add a custom 'check phase.
[native-inputs]: Add perl.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 66c5e40762
gnu: emacs-d-mode: Update to 2.0.12.
* gnu/packages/emacs-xyz.scm (emacs-d-mode): Update to 2.0.12.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 8578b8d8b5
gnu: openmpi: Update to 4.1.4.
* gnu/packages/mpi.scm (openmpi): Update to 4.1.4.
2022-06-05 02:00:00 +02:00
Jai Vetrivelan 5a42df6e49
gnu: Add emacs-xah-fly-keys.
* gnu/packages/emacs-xyz.scm (emacs-xah-fly-keys): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:55:39 +02:00
Aleksandr Vityazev 8e6228d499
gnu: emacs-plz: Update to 0.1.
* gnu/packages/emacs-xyz (emacs-plz): Update to 0.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:45:10 +02:00
Rostislav Svoboda 899c29805f
gnu: emacs-evil-collection: Update to 0.0.8.
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.8.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:40:29 +02:00
André A. Gomes c53a92ca2d
gnu: emacs-modus-themes: Update to 2.4.0.
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.4.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:38:27 +02:00
jgart via Guix-patches via 5f4946fac5
gnu: Add emacs-popon.
* gnu/packages/emacs-xyz.scm (emacs-popon): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-07 21:01:41 +02:00
derekchuank@outlook.com b42ed3b77c
gnu: Add xwhite.
* gnu/packages/xdisorg.scm (xwhite): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-07 18:29:13 +02:00
Foo Chuan Wei d78478758e
gnu: Add edlin.
* gnu/packages/text-editors.scm (edlin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-07 18:29:13 +02:00
Felix Lechner 2c8c9403ae
gnu: nyacc: Update to 1.07.0.
* gnu/packages/mes.scm (nyacc): Update to 1.07.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-07 18:29:12 +02:00
Ludovic Courtès 71388e1fda
gnu: guile-fibers: Update to 1.1.1.
* gnu/packages/guile-xyz.scm (guile-fibers-1.1): Update to 1.1.1.
2022-06-07 18:29:12 +02:00
Efraim Flashner 413b85ad4f
gnu: Remove unused patch.
* gnu/packages/patches/python-flake8-polyfill-flake8-4-compat.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-07 19:11:48 +03:00
Vagrant Cascadian 96d47797dc
gnu: python-debian: Set version to build reproducibly.
* gnu/packages/python-xyz.scm (python-debian)[arguments]: Add 'set-version
  phase.
2022-06-07 08:42:41 -07:00
Maxim Cournoyer ceeb2bfcae
gnu: offlate: Fix build.
* gnu/packages/python-xyz.scm (offlate)
[phases]{patch-for-pygit2}: New phase.
2022-06-07 09:11:56 -04:00
Maxim Cournoyer e3d2650726
gnu: python-pygit2: Update to 1.9.2 and enable tests.
* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.9.2.
[tests?]: Delete argument.
[phases]{check}: New phase override.
[description]: Fix sentence.
2022-06-07 09:11:55 -04:00
Maxim Cournoyer 5125d005ed
gnu: python-pygmsh: Update to 7.1.17.
* gnu/packages/simulation.scm (python-pygmsh): Update to 7.1.17.
[source]: Remove snippet and modules fields.
[origin]: Prefix tag by "v".
[phases]: Delete trailing #t.
{workaround-gmsh-detection-failure}: New phase.
{build, install}: New phase overrides.
{check}: Honor tests and remove extraneous add-installed-pythonpath call.
[native-inputs]: Remove wheel.  Add python-pypa-build and python-flit-core.
[propagated-inputs]: Remove python-importlib-metadata.
2022-06-07 09:11:55 -04:00
Maxim Cournoyer 937094b75c
gnu: python-xunitparser: Update to 1.3.4.
* gnu/packages/python-check.scm (python-xunitparser): Update to 1.3.4.
2022-06-07 09:11:55 -04:00
Maxim Cournoyer 8b2ce33ee2
gnu: nikola: Update to 8.2.2.
* gnu/packages/python-xyz.scm (nikola): Update to 8.2.2.
2022-06-07 09:11:54 -04:00
Maxim Cournoyer f336f69f28
gnu: electron-cash: Apply new style to inputs and use gexps.
* gnu/packages/finance.scm (electron-cash)[phases]: Use gexps.
[inputs]: Use new style.
2022-06-07 09:11:54 -04:00
Maxim Cournoyer a7e985d3a3
gnu: electron-cash: Update to 4.2.10.
* gnu/packages/finance.scm (electron-cash): Update to 4.2.10.
2022-06-07 09:11:54 -04:00
Maxim Cournoyer da0839c77d
gnu: trezor-agent: Update to 0.14.4.
* gnu/packages/finance.scm (trezor-agent): Update to 0.14.4.
[phases]{relax-requirements}: New phase.
2022-06-07 09:11:54 -04:00
Maxim Cournoyer 036a464258
gnu: python-trezor: Add python-hidapi optional dependency.
* gnu/packages/finance.scm (python-trezor)
[propagated-inputs]: Add python-hidapi.
2022-06-07 09:11:54 -04:00
Maxim Cournoyer 4e92098e85
gnu: python-trezor-agent: Delete trailing #t and honor TESTS?.
* gnu/packages/finance.scm (python-trezor-agent)
[phases]: Delete trailing #t.
{check}: Honor TESTS?.  Delete extraneous add-installed-pythonpath call.
2022-06-07 09:11:53 -04:00
Maxim Cournoyer 08063e55ba
gnu: python-trezor: Update to 0.13.0.
* gnu/packages/finance.scm (python-trezor): Update to 0.13.0.
[source]: Delete broken symbolic links in snippet.
[propagated-inputs]: Use python-click-7.
[native-inputs]: Re-order.
2022-06-07 09:11:53 -04:00
Maxim Cournoyer 8df6117b78
gnu: python-flask-restx: Skip networking dependent test.
* gnu/packages/python-web.scm (python-flask-restx)
[phases]{check}: Skip the 'test_redirect' test.
2022-06-07 09:11:53 -04:00
Maxim Cournoyer 53a0e405ff
gnu: python-flask-combo-jsonapi: Skip failing test.
* gnu/packages/python-web.scm (python-flask-combo-jsonapi)
[phases]{check}: Skip
test_get_list_with_simple_filter_relationship_custom_qs_api test.
[native-inputs]: Normalize indentation.
2022-06-07 09:11:53 -04:00
Maxim Cournoyer 86a915433b
gnu: xenon: Update to 0.9.0, rename and relocate.
* gnu/packages/python-xyz.scm (python-xenon): Rename to...
* gnu/packages/code.scm (xenon): ... this.  Update to 0.9.0.
[native-inputs]: Delete field.
[inputs]: New field.
[phases]: Delete argument.
(python-xenon): Mark as deprecated.
2022-06-07 09:11:53 -04:00
Maxim Cournoyer 5022cf8e04
gnu: python-flake8: Update to 4.0.1.
* gnu/packages/python-xyz.scm (python-flake8): Update to 4.0.1.
[phases]{check}: Delete extraneous add-installed-pythonpath call.
[propagated-inputs]: Re-indent.
[native-inputs]: Remove python-mock.
2022-06-07 09:11:51 -04:00
Maxim Cournoyer f4696aeb94
gnu: Remove python-flake8-polyfill.
This package is mostly useful for Flake8 version 2 or 3 (see:
https://github.com/PyCQA/flake8-polyfill/pull/14#issuecomment-979161161).

* gnu/packages/python-xyz.scm (python-flake8-polyfill): Delete variable.
2022-06-07 09:11:20 -04:00
Maxim Cournoyer e05cac9080
gnu: python-pep8-naming: Update to 0.13.0.
* gnu/packages/python-xyz.scm (python-pep8-naming): Update to 0.13.0.
[propagated-inputs]: Remove python-flake8-polyfill.
2022-06-07 09:11:04 -04:00
Maxim Cournoyer e326552698
gnu: python-radon: Update to 5.1.0.
* gnu/packages/python-xyz.scm (python-radon): Update to 5.1.0.
[propagated-inputs]: Remove python-flake8-polyfill.
2022-06-07 09:11:03 -04:00
Josselin Poiret 0aa4311790
gnu: install: Add uvesafb service only on targets that support v86d.
Fixes <https://issues.guix.gnu.org/55806>.

* gnu/system/install.scm (%installation-services): Refactor into a
procedure, so that it can capture the system it's installing for.
Conditionally add uvesafb-service-type based on whether v86d is
supported by the target architecture.
(installation-os)[services]: Use the %installation-service procedure.
(uvesafb-shepherd-service): Remove %host-type checks.

Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>
2022-06-07 11:49:18 +02:00
Efraim Flashner 478d2e4b02
gnu: python-flake8-polyfill: Update home-page.
* gnu/packages/python-xyz.scm (python-flake8-polyfill)[home-page]: Update
to new upstream URI.
2022-06-07 09:25:33 +03:00
Efraim Flashner 0fd5222ad6
gnu: python-flake8-polyfill: Honor tests? flag.
* gnu/packages/python-xyz.scm (python-flake8-polyfill)[arguments]:
Adjust custom 'check phase to honor the #:tests? flag.
2022-06-07 09:24:14 +03:00
Efraim Flashner 49a47bdcc5
gnu: python-flake8-polyfill: Fix building with python-flake8@4.
* gnu/packages/python-xyz.scm (python-flake8-polyfill)[source]: Add patch.
* gnu/packages/patches/python-flake8-polyfill-flake8-4-compat.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-06-07 09:22:35 +03:00
Petr Hodina 7e7c8b253c
gnu: python-flake8: Update to 4.0.1.
* gnu/packages/python-xyz.scm (python-flake8): Update to 4.0.1.
[source]: Remove snippet.
[arguments]: Respect tests?.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-06-07 09:14:04 +03:00
Petr Hodina 2660f99b57
gnu: python-pycodestyle: Update to 2.8.0.
* gnu/packages/python-xyz.scm (python-pycodestyle): Update to 2.8.0.
[arguments]: Respect tests?.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-06-07 09:13:52 +03:00
Leo Famulari 2680f30a2e
gnu: Borg: Update to 1.2.1.
* gnu/packages/backup.scm (borg): Update to 1.2.1.
2022-06-06 22:57:26 -04:00
Leo Famulari b04c338265
gnu: python-msgpack: Update to 1.0.4.
* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.0.4.
2022-06-06 22:57:14 -04:00
Tobias Geerinckx-Rice 80683d29f4
gnu: perl-catalyst-devel: Update to 1.42.
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.42.
2022-06-05 02:00:18 +02:00
Tobias Geerinckx-Rice aef64b9c45
gnu: emacs-kind-icon: Update to 0.1.5.
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.1.5.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice f6eab5abce
gnu: perl-xml-compile-soap: Update to 3.27.
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.27.
[propagated-inputs]: Replace perl-file-slurp-tiny with perl-file-slurper.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 67a78c0ad6
gnu: ndctl: Update to 73.
* gnu/packages/disk.scm (ndctl): Update to 73.
[build-system]: Switch to Meson.
[arguments]: Adjust #:configure-flags accordingly.  Remove #:make-flags.
[native-inputs]: Remove automake, autoconf, and libtool.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice cd81b3bdfd
gnu: memkind: Update to 1.13.0.
* gnu/packages/disk.scm (memkind): Update to 1.13.0.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice e3b94eddf6
gnu: sudo: Update to 1.9.11.
* gnu/packages/admin.scm (sudo): Update to 1.9.11.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 7d00cdf44d
gnu: diffoscope: Update to 216.
* gnu/packages/diffoscope.scm (diffoscope): Update to 216.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 7f2328b7df
gnu: guvcview: Update to 2.0.8.
* gnu/packages/video.scm (guvcview): Update to 2.0.8.
[inputs]: Add bdb and libjpeg-turbo.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice b8686f1bfc
gnu: python-pyodbc-c: Fix comment.
* gnu/packages/databases.scm (python-pyodbc-c): Fix comment about tests.
2022-06-05 02:00:00 +02:00
Leo Famulari 337441609c
gnu: mu: Update to 1.6.11.
* gnu/packages/mail.scm (mu): Update to 1.6.11.
2022-06-06 20:53:49 -04:00
Leo Famulari 3b4e56c953
gnu: Mutt: Update to 2.2.6.
* gnu/packages/mail.scm (mutt): Update to 2.2.6.
2022-06-06 20:53:49 -04:00
Vagrant Cascadian 5850f1e99a
gnu: virtuoso-ose: Do not embed kernel version and timestamps.
* gnu/packages/databases.scm (virtuoso-ose)[arguments]: Add
  'avoid-embedding-kernel-and-timestamps phase.
2022-06-06 15:08:24 -07:00
Vagrant Cascadian da115f9f7a
gnu: uim: Build reproducibly.
* gnu/packages/xorg.scm (uim)[arguments]: Disable parallel build.
2022-06-06 15:08:21 -07:00
Vagrant Cascadian 964cdd57fa
gnu: discrover: Use reproducible timestamps.
* gnu/packages/bioinformatics.scm (discrover)[arguments]: Add
  'set-force-source-date phase.
2022-06-06 15:08:18 -07:00
Vagrant Cascadian 8bac52e6f3
gnu: perl-term-size-perl: Remove timestamps.
* gnu/packages/perl.sc (perl-term-size-perl)[arguments]: Add
  'remote-timestamps phase.
2022-06-06 13:50:50 -07:00
Vagrant Cascadian a04a987450
gnu: itpp: Avoid embedding build dates.
* gnu/packages/maths.scm (itpp): Add 'set-man-page-date and
  'set-force-source-date phases.
2022-06-06 13:50:46 -07:00
Ludovic Courtès 264ca9452f
services: syslogd: Do not fsync at each line.
Fixes <https://issues.guix.gnu.org/55707>.

Previously Inetutils' syslogd would call 'fsync' after each line written
to a file.  This would significantly increase boot times on machines
with slow-ish spinning HDDs, where each 'fsync' call would take between
0.1s and 0.4s (and we'd do two of them for each line, one for
/var/log/messages and one for /var/log/debug).

* gnu/services/base.scm (%default-syslog.conf): Add a '-' before each
file name, except /var/log/secure.  Change what goes to /var/log/debug.
2022-06-06 22:43:31 +02:00
Ludovic Courtès 635d49f97e
packages: Use SRFI-71 instead of SRFI-11.
* gnu/packages.scm (%package-module-path): Use 'let*' instead of
'let*-values'.
(specification->package, specification->location)
(specification->package+output): Use 'let' instead of 'let-values'.
2022-06-06 22:43:30 +02:00
Antero Mejr 7041fe0646
packages: Add 'specifications->packages'.
* gnu/packages.scm (specifications->packages): New procedure.
* guix/scripts/home/import.scm (manifest+configuration-files->code): Use it.
* tests/home-import.scm (match-home-environment-no-services)
(match-home-environment-no-services-nor-packages)
(match-home-environment-bash-service)
(match-home-environment-bash-service-with-alias): Adjust 'packages'
field accordingly.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-06-06 22:43:30 +02:00
Peter Polidoro f08bfca083
gnu: Add python-progress.
* gnu/packages/python-xyz.scm (python-progress): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-06 22:43:30 +02:00
Peter Polidoro 2aceb1e13e
gnu: Add python-canopen.
* gnu/packages/python-xyz.scm (python-canopen): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-06 22:43:30 +02:00
Karl Hallsby 618f665a5f
bootloader: grub: Add removable grub-efi bootloader option.
For single-disk installs (external USBs) and for amnesiac UEFIs, Guix is not
found using its default Grub EFI bootloader location of
/boot/efi/EFI/Guix/grubx64.efi means the Guix install will not be found.

To handle this, we can place the bootloader file in the UEFI specification
location, overwriting any other OS that may have placed a file there. This
location is namely /boot/efi/EFI/BOOT/BOOTX64.efi. Grub has explicit support
for this location/situation with the `--removable` flag.

* gnu/bootloader/grub.scm (install-grub-efi-removable)
(grub-efi-removable-bootloader): New variables.
* doc/guix.texi (Bootloader Configuration): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-06 22:43:30 +02:00
Arun Isaac e614cf2907
gnu: guile-xapian: Update to 0.2.0.
* gnu/packages/guile-xyz.scm (guile-xapian): Update to 0.2.0.
[source]: Remove modules and snippet setting LD_LIBRARY_PATH.
2022-06-07 01:20:53 +05:30
Efraim Flashner b995c1bd10
gnu: python-flake8: Allow building with newer python-pyflakes.
* gnu/packages/python-xyz.scm (python-flake8)[source]: Add snippet to
remove upper bound on dependency python-pyflakes version.
2022-06-06 22:18:36 +03:00