efefb2be3a
gnu: Add r-trajectoryutils.
...
* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
2021-06-05 09:12:39 +02:00
ce99b4da63
gnu: Add r-restfulr.
...
* gnu/packages/bioconductor.scm (r-restfulr): New variable.
2021-06-05 09:12:39 +02:00
ab66c9a2cd
gnu: Add r-arrow.
...
* gnu/packages/cran.scm (r-arrow): New variable.
2021-06-05 09:12:39 +02:00
b71f21339f
gnu: Add r-ggpointdensity.
...
* gnu/packages/cran.scm (r-ggpointdensity): New variable.
2021-06-05 09:12:39 +02:00
41ea9bed97
gnu: Add r-ggnewscale.
...
* gnu/packages/cran.scm (r-ggnewscale): New variable.
2021-06-05 09:12:39 +02:00
d5c08f11e1
gnu: Add r-aplot.
...
* gnu/packages/cran.scm (r-aplot): New variable.
2021-06-05 09:12:39 +02:00
c343c3bc1f
guix: Update to Bioconductor 3.13.
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* guix/build-system/r.scm (bioconductor-uri): Update version.
* guix/import/cran.scm (%bioconductor-version): Update.
2021-06-05 09:12:39 +02:00
f98837a6ba
gnu: pigx-rnaseq: Update to 0.0.13.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.13.
[arguments]: Remove obsolete substitutions.
[inputs]: Remove fastqc and trim-galore; add hisat2 and fastp.
2021-06-05 09:12:39 +02:00
7382aa00b8
gnu: python-scanpy: Update to 1.7.2.
...
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.7.2.
2021-06-04 23:51:35 +02:00
e639da604f
gnu: python-anndata: Update to 0.7.6.
...
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.6.
2021-06-04 23:51:24 +02:00
29745d23b8
gnu: Use define-public in (gnu packages xiph).
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* gnu/pakages/xiph.scm: Replace all manual package #:exports with
define-public.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 15:08:35 +02:00
bb934ab79d
gnu: python-pydantic: Update to 1.8.2.
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* gnu/packages/python-xyz.scm (python-pydantic): Update to 1.8.2.
[arguments]: Disable some new tests.
[native-inputs]: Add PYTHON-PYTEST-MOCK.
[propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS.
2021-06-04 14:57:39 +02:00
1ea00cceef
gnu: wfview: Update to 1.0.
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* gnu/packages/radio.scm (wfview): Update to 1.0.
2021-06-04 13:50:52 +02:00
f50a88c1fa
gnu: smalltalk: Find glibc even when cross-compiling.
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glibc is named "cross-libc" instead of "libc" when cross-compiling. Smalltalk
still fails to cross-compile though.
* gnu/packages/smalltalk.scm
(smalltalk)[arguments]{phases}<#:fix-libc>: Also search for
"cross-libc" instead of only "libc" in 'inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:40:02 +02:00
961a8f1302
gnu: smalltalk: Move 'zip' from 'inputs' to 'native-inputs'.
...
The 'zip' package is not in the references of 'smalltalk'.
As such, it probably should be a native input, not a regular
input. This can be confirmed by trying to cross-compile
the 'smalltalk' package, without this commit. The configure
script will ask to install InfoZIP.
* gnu/packages/smalltalk.scm
(smalltalk)[inputs]{zip}: Move to ...
(smalltalk)[native-inputs]{zip} ... here.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:58 +02:00
4a600ada5a
gnu: ding: Use 'inputs' in build phases instead of '%build-inputs'.
...
In build phases, the former is preferred.
* gnu/packages/dictionaries.scm
(ding)[arguments]<#:phases>{install}: Use 'inputs' argument instead
of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:54 +02:00
156b8f9cd2
gnu: qemacs: Use 'native-inputs' instead of '%build-inputs'.
...
In build phases, the former (or 'inputs', as appropriate) is preferred.
* gnu/packages/text-editors.scm
(qemacs)[arguments]<#:phases>{install-extra-documentation}: Use
'native-inputs' argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:49 +02:00
09be86744f
gnu: neovim: Use 'inputs' in phases instead of '%build-inputs'.
...
In build phases, the former is preferred.
* gnu/packages/vim.scm
(neovim)[arguments]<#:phases>{set-lua-path}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:46 +02:00
f5f78d0d02
gnu: smalltalk: Use 'inputs' in phases instead of '%build-inputs'.
...
In build phases, the former is preferred.
* gnu/packages/smalltalk.scm
(smalltalk)[arguments]<#:phases>{fix-libc}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:42 +02:00
8190f5bb97
gnu: ci: Use 'inputs' in build phases instead of '%build-inputs'.
...
In build phases, the former is preferred.
* gnu/packages/ci.scm
(cuirass)[arguments]<#:phases>{wrap-program}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:34:37 +02:00
a9afff4beb
doc: Mention virtualization module and add missing closing parenthesis.
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* doc/contributing.texi (Submitting Patches): Mention virtualization module
and add missing closing parenthesis.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-06-04 13:28:40 +02:00
d06ae05808
gnu: Add pigx-sars-cov2-ww.
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* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): New variable.
2021-06-04 12:57:08 +02:00
4f773bc22d
gnu: sbcl-nibbles: Update to 0.14-2.dad2524.
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* gnu/packages/lisp-xyz.scm (sbcl-nibbles): Update to 0.14-2.dad2524.
2021-06-04 10:59:50 +02:00
f1bfd9f194
gnu: remmina: Update to 1.4.18.
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* gnu/packages/vnc.scm (remmina)[version]: Update to 1.4.18.
2021-06-03 23:46:04 -04:00
6148172c3e
gnu: gajim-omemo: Update to 2.7.14.
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* gnu/packages/messaging.scm (gajim-omemo)[version]: Update to 2.7.14.
2021-06-03 23:35:12 -04:00
6b6b87f1c3
gnu: linux-libre 4.4: Update to 4.4.271.
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* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.271.
(linux-libre-4.4-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
6fa18e48a7
gnu: linux-libre 4.9: Update to 4.9.271.
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* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.271.
(linux-libre-4.9-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
ba85dff344
gnu: linux-libre 4.14: Update to 4.14.235.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.235.
(linux-libre-4.14-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
37ec3f3bec
gnu: linux-libre 4.19: Update to 4.19.193.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.193.
(linux-libre-4.19-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
a75aa36e0a
gnu: linux-libre 5.4: Update to 5.4.124.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.124.
(linux-libre-5.4-pristine-source): Update hash.
2021-06-03 22:41:01 -04:00
f23d5340c2
gnu: linux-libre 5.10: Update to 5.10.42.
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* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.42.
(linux-libre-5.10-pristine-source): Update hash.
(deblob-scripts-5.10): Update hash.
2021-06-03 22:41:00 -04:00
41d73dfba1
gnu: linux-libre: Update to 5.12.9.
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* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.9.
(linux-libre-5.12-pristine-source): Update hash.
(deblob-scripts-5.12): Update hash.
2021-06-03 22:40:51 -04:00
7e16321560
licenses: Add BSD-1-Clause license.
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* licenses.scm (bsd-1): New variable.
2021-06-03 21:53:05 +02:00
bb414c9352
gnu: komikku: Update to 0.29.0.
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* gnu/packages/gnome.scm (komikku): Update to 0.29.0.
2021-06-03 21:46:48 +02:00
97b4a7e37c
gnu: emacs-calibredb: Update to 2.10.0.
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* gnu/packages/emacs-xyz.scm (emacs-calibredb): Update to 2.10.0.
2021-06-03 21:13:23 +02:00
ecbfa20609
doc: Fix example iptables configuration.
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* doc/guix.texi (Networking Services): Allow established and related incoming
connections in example iptables configuration.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-06-04 00:11:47 +05:30
9703a51048
gnu: Add rfcat.
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* gnu/packages/radio.scm (rfcat): New variable.
2021-06-03 19:01:52 +02:00
38adfcd6f5
gnu: rasdaemon: Update to 0.6.7.
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* gnu/packages/linux.scm (rasdaemon): Update to 0.6.7.
[arguments]: Add a "--with-sysconfdefdir" configure flag.
2021-06-03 18:23:39 +02:00
0e8d650c4f
gnu: php: Update to 7.4.20.
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* gnu/packages/php.scm (php): Update to 7.4.20.
2021-06-03 18:23:39 +02:00
240cd1a099
gnu: fltk: Update to 1.3.6.
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* gnu/packages/fltk.scm (fltk): Update to 1.3.6.
2021-06-03 18:23:39 +02:00
0dd2670ad5
gnu: amule: Use HTTPS home page.
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* gnu/packages/networking.scm (amule)[home-page]: Use HTTPS.
2021-06-03 18:23:39 +02:00
e348436589
gnu: amule: Update to 2.3.3.
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* gnu/packages/networking.scm (amule): Update to 2.3.3.
[source]: Remove patch.
* gnu/packages/patches/amule-crypto-6.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-03 18:23:39 +02:00
606b200fe7
gnu: mtools: Update to 4.0.29.
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* gnu/packages/mtools.scm (mtools): Update to 4.0.29.
2021-06-03 18:23:38 +02:00
cf6be24529
gnu: emacs-epkg: Update to 3.3.0.
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* gnu/packages/emacs-xyz.scm (emacs-epkg): Update to 3.3.0.
2021-06-03 14:49:15 +02:00
7668c2cbe8
gnu: emacs-closql: Update to 1.0.5.
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* gnu/packages/emacs-xyz.scm (emacs-closql): Update to 1.0.5.
2021-06-03 14:45:13 +02:00
cc0f152ffd
gnu: emacs-ebdb: Update to 0.6.23.
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* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.6.23.
2021-06-03 14:29:08 +02:00
08f1400bec
gnu: monolith: Update to 2.5.0.
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* gnu/packages/web.scm (monolith): Update to 2.5.0.
2021-06-03 14:24:35 +02:00
b7c5f27579
gnu: rust-regex-1: Update to 1.5.4.
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* gnu/packages/crates-io.scm (rust-regex-1): Update to 1.5.4.
2021-06-03 14:24:35 +02:00
71beab1c1a
gnu: rust-aho-corasick-0.7: Update to 0.7.18.
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* gnu/packages/crates-io.scm (rust-aho-corasick-0.7): Update to 0.7.18.
2021-06-03 14:24:34 +02:00
a04dd9b01b
gnu: rust-memchr-2: Update to 2.4.0.
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* gnu/packages/crates-io.scm (rust-memchr-2): Update to 2.4.0.
2021-06-03 14:24:34 +02:00
Ricardo Wurmus
Roel Janssen
Brendan Tildesley
Marius Bakke
Guillaume Le Vaillant
Maxime Devos
Solene Rapenne
Raghav Gururajan
Leo Famulari
Xinglu Chen
Leo Prikler
Nicolas Goaziou
Eric Brown
Tobias Geerinckx-Rice